sp|Q69JZ7|XCT_ORYSJ ----> Protein XAP5 CIRCADIAN TIMEKEEPER
Intron 1 GTATTTGTTT ... AATGCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.23 | 38 | 10 | 13 |
| A2 | 26.19 | 31 | 12 | 10 |
| A3 | 18.57 | 57 | 12 | 14 |
| A4 | 26.98 | 23 | 6 | 11 |
| A5 | 39.53 | 13 | 3 | 14 |
| A6 | 20 | 60 | 9 | 21 |
| A7 | 21.87 | 159 | 36 | 53 |
| A8 | 21.93 | 162 | 38 | 53 |
| A9 | 20.91 | 191 | 39 | 62 |
| A10 | 16.67 | 160 | 15 | 49 |
>TRINITY_DN40682_c0_g2_i5 from sample A7 / Example spliced isoformCAAATATTTGCCGTGGTTATCTCCCCGAAAATTGATCAGTCGAGGGTTATTACTGAGAATTTAACACAAATCCCTGCTCGTGGACGACGTATTTACAGCTTCTCAATCGGCAAATACGGGCGCAGGGGAGAGTATACAAATCTTGTAATTCATAGATTCATTTTAAGAGGAGGGGGAAGATGTCGGGCATGGGAGATGGA
TATGTGGGCACAGCCCAGGATGCCGTCAGAATTCGGAGGCTGGAGAAACAGAGGGAAGCCGAGAGAAAGCGCATCCAGGACTTGAAGAACAAATCCGCCTCTGGAGGACAGAACGGCCTTCTCCAGTTCGGCTCCGGCACTTCGGAGATACTTGAAACTGCATTCAAAAAAGAAACTGTTGGTCTTGTCACAAGAGAGCA
ATATGTGGAGAAGCGAGTCAACCTCCGTACCAAAATTGAAGAAGAGGAGAAGGAGAAGCTTCAGAAACTTCAACAGGAAGAAGAGGAGCTTGAGAAGCAAAAGCGAAAGAAAAGGAGGATAAAAGGACCTACCCGGTTATCATTTGCTGATGAAATAGAAAATGAAACAGAGGATGAAAATGCAAGTTCTGATGAGGGGG
AGCGAAAGAAGAATAAACTTGGGCAGCTCGGTAAAGATCCAACAGTGGAGACAAGTTTCTTGCCTGATAGGGAGCGGGAAGCTGAGGAACAGGCTGAACGTGAACGGTTGAGGAAGAAGTGGATGACTGAACAAGAGCATATTAGAAATGAACCATTGGAGATTACTTACAGTTATTGGGATGGAGCAGGTCATCGAAGA
GTTATTCAGGCTCGCAAAGGAGACACAATAGCTGAATTTCTCCGTGCTGTTCAGCAGCAACTTGCACCTGAGTTCAGAGAAATTCGGACAACTTCTGTAGAGAATTTACTCTATGTGAAGGAGGACCTCATCATTCCCCATCAACATAGCTTCTATGAGCTAATTACAAACAAGGCAAGGGGCAAAAGTGGACCGCTTTT
TCATTTTGACGTTCATGAAGACATTCGGACAACAGCTGATGCTACTATAGAGAAGGATGAGTCACATGCTGGAAAAGTTGTTGAACGACATTGGTATGAAAAGAACAAGCACATATTTCCGGCATCCAGATGGGAGATATATGATCCTACTAAGAAGTGGGAACGCTACACAATTCACGGGGATTAAATTTTAATGGCAC
TGTTGCTGTATTTAAGAATAGAATCGTAAATCATCCACAGGAGCTTGCTTGCCTTGAACATAATACTATTTGGTTTAGTTCAATGTAGAGCTGTCTGTATGATTTGGTTGCCATTCATGCAGCAAACGGAATTGGTCTTTTGCTTTCATTATGTGCCTATTAGACAGTTTGATGCTTGCAGCTGAAGAGTTGGATAAGGA
GTTTCTCATGGCATCCCAATGATAATCGATATACTAATTATTTTGCTTTTGGACTCTATGTTGAGTTGGTTTTATTTAAATTTGATTCTATACTTCTAGATTTATAACATATATGGCAAATGCATTGCTGCCCTGTATGCTTTGGAATCTGGATATATTTAGTGAATATTATCTCAAGATGCATCCTATGTTAACCTGAG
GAATTTTTGGTATACTTTGGATTTCTTTGTAGATATACATTGTAAGCAATTATGGGAACATGTTATAAGGTGAACAAATTTTAGTATCGAAAGGGATATGAACATTTATGTGAAAGCAATTATGGTCATTATTCAAG
>TRINITY_DN40682_c0_g2_i4 from sample A7 / Example unspliced isoform:CAAATATTTGCCGTGGTTATCTCCCCGAAAATTGATCAGTCGAGGGTTATTACTGAGAATTTAACACAAATCCCTGCTCGTGGACGACGTATTTACAGCTTCTCAATCGGCAAATACGGGCGCAGGGGAGAGTATACAAATCTTGTAATTCATAGATTCATTTTAAGAGGAGGGGGAAGATGTCGGGCATGGGAGATGGA
TATGTGGGCACAGCCCAGGATGCCGTCAGAATTCGGAGGCTGGAGAAACAGAGGGAAGCCGAGAGAAAGCGCATCCAGGACTTGAAGAACAAATCCGCCTCTGGAGGACAGAACGGCCTTCTCCAGTTCGGCTCCGGCACTTCGGAGATACTTGAAACTGCATTCAAAAAAGAAACTGTTGGTCTTGTCACAAGAGAGCA
ATATGTGGAGAAGCGAGTCAACCTCCGTACCAAAATTGAAGAAGAGGAGAAGGAGAAGCTTCAGAAACTTCAACAGGAAGAAGAGGAGCTTGAGAAGCAAAAGCGAAAGAAAAGGAGGATAAAAGGACCTACCCGGTTATCATTTGCTGATGAAATAGAAAATGAAACAGAGGATGAAAATGCAAGTTCTGATGAGGGGG
AGCGAAAGAAGAATAAACTTGGGCAGCTCGGTAAAGATCCAACAGTGGAGACAAGTTTCTTGCCTGATAGgtatttgtttttcagtctaactttatagatgtgtagacagaaggaatagggtacgggattccatataatagtttactttgatctgtatagtatcaagtggtttaatcaccaatgcttgaaagatcccact
tcgtggaatttaacttgtgttctccagggactggaggacaatgcttcagGGAGCGGGAAGCTGAGGAACAGGCTGAACGTGAACGGTTGAGGAAGAAGTGGATGACTGAACAAGAGCATATTAGAAATGAACCATTGGAGATTACTTACAGTTATTGGGATGGAGCAGGTCATCGAAGAGTTATTCAGGCTCGCAAAGGA
GACACAATAGCTGAATTTCTCCGTGCTGTTCAGCAGCAACTTGCACCTGAGTTCAGAGAAATTCGGACAACTTCTGTAGAGAATTTACTCTATGTGAAGGAGGACCTCATCATTCCCCATCAACATAGCTTCTATGAGCTAATTACAAACAAGGCAAGGGGCAAAAGTGGACCGCTTTTTCATTTTGACGTTCATGAAGA
CATTCGGACAACAGCTGATGCTACTATAGAGAAGGATGAGTCACATGCTGGAAAAGTTGTTGAACGACATTGGTATGAAAAGAACAAGCACATATTTCCGGCATCCAGATGGGAGATATATGATCCTACTAAGAAGTGGGAACGCTACACAATTCACGGGGATTAAATTTTAATGGCACTGTTGCTGTATTTAAGAATAG
AATCGTAAATCATCCACAGGAGCTTGCTTGCCTTGAACATAATACTATTTGGTTTAGTTCAATGTAGAGCTGTCTGTATGATTTGGTTGCCATTCATGCAGCAAACGGAATTGGTCTTTTGCTTTCATTATGTGCCTATTAGACAGTTTGATGCTTGCAGCTGAAGAGTTGGATAAGGAGTTTCTCATGGCATCCCAATG
ATAATCGATATACTAATTATTTTGCTTTTGGACTCTATGTTGAGTTGGTTTTATTTAAATTTGATTCTATACTTCTAGATTTATAACATATATGGCAAATGCATTGCTGCCCTGTATGCTTTGGAATCTGGATATATTTAGTGAATATTATCTCAAGATGCATCCTATGTTAACCTGAGGAATTTTTGGTATACTTTGGA
TTTCTTTGTAGATATACATTGTAAGCAATTATGGGAACATGTTATAAGGTGAACAAATTTTAGTATCGAAAGGGATATGAACATTTATGTGAAAGCAATTATGGTCATTATTCAAG
Intron 2 GTGTGGTCAT ... ATTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.09 | 68 | 2 | 24 |
| A2 | 37.76 | 61 | 0 | 37 |
| A3 | 27.78 | 39 | 0 | 15 |
| A4 | 28 | 36 | 0 | 14 |
| A5 | 26.83 | 30 | 0 | 11 |
| A6 | 27.42 | 90 | 2 | 34 |
| A7 | 26.92 | 171 | 1 | 63 |
| A8 | 28.97 | 282 | 0 | 115 |
| A9 | 26.22 | 242 | 2 | 86 |
| A10 | 28.05 | 177 | 1 | 69 |
>TRINITY_DN37901_c0_g1_i3 from sample A8 / Example spliced isoformCAAATATTTGCCGTGGTTATATCCCCGAAAATTGATCAGTCGAGGGTTATTACTGAGAATTTAACACAAATCCCTGCTCGTGGACGACGTATTTACAGCTTCTCAATCGGCAAATACGGGCGCAGGGGAGAGTATACAAATCTTGTAATTCATAGATTCATTTTAAGAGGAGGGGGAAGATGTCGGGCATGGGAGATGGA
TATGTGGGCACAGCCCAGGATGCCGTCAGAATTCGGAGGCTGGAGAAACAGAGGGAAGCCGAGAGAAAGCGCATCCAGGACTTGAAGAACAAATCCGCCTCTGGAGGACAGAACGGCCTTCTCCAGTTCGGCTCCGGCACTTCGGAGATACTTGAAACTGCATTCAAAAAAGAAACTGTTGGTCTTGTCACAAGAGAGCA
ATATGTGGAGAAGCGAGTCAACCTCCGTACCAAAATTGAAGAAGAGGAGAAGGAGAAGCTTCAGAAACTTCAACAGGAAGAAGAGGAGCTTGAGAAGCAAAAGCGAAAGAAAAGGAGGATAAAAGGACCTACCCGGTTATCATTTGCTGATGAAATAGAAAATGAAACAGAGGATGAAAATGCAAGTTCTGATGAGGGGG
AGCGAAAGAAGAATAAACTTGGGCAGCTCGGTAAAGATCCAACAGTGGAGACAAGTTTCTTGCCTGACAGGGACTGGAGGACAATGCTTTAGGGAGCGGGAAGCTGAGGAACAGGCTGAACGTGAACGGTTGAGGAAGAAGTGGATGACTGAACAAGAGCATATTAGAAATGAACCATTGGAGATTACTTACAGTTATTG
GGATGGAGCAGGTCATCGAAGAGTTATTCAGGCTCGCAAAGGAGACACAATAGCTGAATTTCTCCGTGCTGTTCAGCAGCAACTTGCACCTGAGTTCAGAGAAATTCGGACAACTTCTGTAGAGAATTTACTCTATGTGAAGGAGGACCTCATCATTCCCCATCAACATAGCTTCTATGAGCTAATTACAAACAAGGCAA
GGGGCAAAAGTGGACCGCTTTTTCATTTTGACGTTCATGAAGACATTCGGACAACAGCTGATGCTACTATAGAGAAGGATGAGTCACATGCTGGAAAAGTTGTTGAACGACATTGGTATGAAAAGAACAAGCACATATTTCCGGCATCCAGATGGGAGATATATGATCCTACTAAGAAGTGGGAACGCTACACAATTCAC
GGGGATTAAATTTTAATGGCACTGTTGCTGTATTTAAGAATAGAATCGTAAATCATCCACAGGAGCTTGCTTGCCTTGAACATATTACTATTTGGTTTAGTTCAATGTAGAGCTGTCTGTATGATTTGGTTGCCATTCATGCAGCAAACGGAATTGGTCTTTTGCTTTCATTATGTGCCTATTAGACAGTTTGATGCTTG
CAGCTGAAGAGTTGGATAAGGAGTTTCTCATGGCATCCCAATGATAATCGATATACTAATTATTTTGCTTTTGGACTCTATGTTGAGTTGGTTTTATTTAAATTTGATTCTATACTTCTAGATTTATAACATATATGGCAAATGCATTGCCCTGTATGCTTTGGAATCTGGATATATTTAGTGAATATTATCTCAAGATG
CATCCTATGTTAACCTGAGGAATTTTTGGTATACTTTGGATTTCTTTGTAGATATACATTGTAAGCAATTATGGGAACATGTTATAAGGTGAACAAATTTTAGTATCGAAAGGGATATGAACATTTATGTGAAAGCAATTATGGTCATTATTCAAGGG
>TRINITY_DN37901_c0_g1_i1 from sample A8 / Example unspliced isoform:GGTGAGGATTGCACCTTGTTTTAGCAATTCTTATATAACTGCCCTGTTTATTTGTTCTAAAACACCGTTGTGATTACTGTGAGGGTATGCTTCTTGCAGCTTTTTCATTTTGACGTTCATGAAGACATTCGGACAACAGCTGATGCTACTATAGAGAAGGATGAGgtgtggtcatcatctggcttttcaccatattctga
gatcatgttcctgtctaagcttttgtatgctgatgtggttagtctaaaatttcttatcatttttgcagTCACATGCTGGAAAAGTTGTTGAACGACATTGGTATGAAAAGAACAAGCACATATTTCCGGCATCCAGATGGGAGATATATGATCCTACTAAGAAGTGGGAACGCTACACAATTCACGGGGATTAAATTTTA
ATGGCACTGTTGCTGTATTTAAGAATAGAATCGTAAATCATCCACAGGAGCTTGCTTGCCTTGAACATATTACTATTTGGTTTAGTTCAATGTAGAGCTGTCTGTATGATTTGGTTGCCATTCATGCAGCAAACGGAATTGGTCTTTTGCTTTCATTATGTGCCTATTAGACAGTTTGATGCTTGCAGCTGAAGAGTTGG
ATAAGGAGTTTCTCATGGCATCCCAATGATAATCGATATACTAATTATTTTGCTTTTGGACTCTATGTTGAGTTGGTTTTATTTAAATTTGATTCTATACTTCTAGATTTATAACATATATGGCAAATGCATTGCCCTGTATGCTTTGGAATCTGGATATATTTAGTGAATATTATCTCAAGATGCATCCTATGTTAACC
TGAGGAATTTTTGGTATACTTTGGATTTCTTTGTAGATATACATTGTAAGCAATTATGGGAACATGTTATAAGGTGAACAAATTTTAGTATCGAAAGGGATATGAACATTTATGTGAAAGCAATTATGGTCATTATTCAAGGG
Intron 3 GTAAGACTTC ... TACTTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.46 | 45 | 8 | 6 |
| A2 | 13.04 | 60 | 9 | 9 |
| A3 | 11.11 | 48 | 9 | 3 |
| A4 | 13.33 | 13 | 2 | 2 |
| A5 | 18.75 | 13 | 2 | 4 |
| A6 | 3.8 | 38 | 3 | 0 |
| A7 | 9.51 | 138 | 23 | 6 |
| A8 | 9.5 | 100 | 17 | 4 |
| A9 | 8.15 | 124 | 20 | 2 |
| A10 | 9.85 | 151 | 28 | 5 |
>TRINITY_DN113377_c0_g2_i1 from sample A2 / Example spliced isoformTTTGGGAATTAAATGGCTTACGGCTTTGCGGTGCAGGCACCGGATTGATGCAATGGCTATTGGCGATCTTCCTTCACTTTGATACTTGAAACTGCATTCAAAAAAGAAACTGTTGGTCTTGTCACAAGAGAGCAATATGTGGAGAAGCGAGTCAACCTCCGTACCAAAATTGAAGAAGAGGAGAAGGAGAAGCTTCAGAA
ACTTCAACAGGAAGAAGAGGAGCTTGAGAAGCAAAAGCGAAAGAAAAGGAGGATAAAAGGACCTACCCGGTTATCATTTGCTGATGAAATAGAAAATGAAACAGAGGATGAAAATGCAAGTTCTGATGAGGGGGAGCGAAAGAAGCATAAACTTGGGCAGCTCGGTAAAGATCCAACAGTGGAGACAAGTTTCTTGCCTG
ATAGGGAGCGGGAAGCTGAGGAACAGGCTGAACGTGAACGGTTGAGGAAGAAGTGGATGACTGAACAAGAGCATATTAGAAATGAACCATTGGAGATTACTTACAGTTATTGGGATGGAGCAGGTCATCGAAGAGTTATTCAGGCTCGCAAAGGAGACACAATAGCTGAATTTCTCCGTGCTGTTCAGCAGCAACTTGCA
CCTGAGTTCAGAGAAATTCGGACAACTTCTGTAGAGAATTTACTCTATGTGAAGGAGGACCTCATCATTCCCCATCAACATAGCTTCTATGAGCTAATTACAAACAAGGCAAGGGGCAAAAGTGGACCGCTTTTTCATTTTGACGTTCATGAAGACATTCGGACAACAGCTGATGCTACTATAGAGAAGGATGAGTCACA
TGCTGGAAAAGCTTGTTGAACGACATTGGTATGAAAAGAACAAGCACATATTTCCGGCATCCAGATGGGAGATATATGATCCTACTAAGAAGTGGGAACGCTACACAATTCACGGGGATTAAATTTTAATGGCACTGTTGCTGTATTTAAGAATAGAATCGTAAATCATCCACAGGAGCTTGCTTGCCTTGAACATAATA
CTATTTGGTTTAGTTCAATGTAGAGCTGTCTGTATGATTTGGTTGCCATTCATGCAGCAAACGGAATTGGTCTTTTGCTTTCATTATGTGCCTATTAGACAGTTTGATGCTTGCAGCTGAAGAGTTGGATAAGGAGTTTCTCATGGCATCCCAATGATAATCGATATACTAATTATTTTGCTTTTGGACTCTATGTTGAG
TTGGTTTTATTTAAATTTGATTCTATACTTCTAGATTTATAACATATATGGCAAATGCATTGCCCTGTATGCTTTGGAATCTGGATATATTTAGTGAATTTTATCTCAAGATGCATCCTATGTTAACCTGAGGAATTTTTGGTATACTTTGGATTTCTTTTTAGATATACATTGTAAGCAATTATGGGAACATGTTATAA
GGTGAACAAATTTTAGTATCGAAAGGGATATGAACATTTATGTGAAAGCAATTATGGTCATTATTCAAGGTACATATCTTGAATTTGTTTTAAAGTATTTAACAATATATTATATTTGCGTTGTTAAGTTTTACTAGCTTGGTTGGTATTTGAGG
>TRINITY_DN113377_c0_g2_i5 from sample A2 / Example unspliced isoform:ATACTTGAAACTGCATTCAAAAAAGAAACTGTTGGTCTTGTCACAAGAGAGCAATATGTGGAGAAGCGAGTCAACCTCCGTACCAAAATTGAAGAAGAGGAGAAGGAGAAGCTTCAGAAACTTCAACAGGAgtaagacttcataggatactggattcttgcatcttaaaccatcttgacatcaagttttgcattttatgc
attttattttagtcagatgttttttggctgagttgttaccaccacttgatgatattttactttttagAGAAGAGGAGCTTGAGAAGCAAAAGCGAAAGAAAAGGAGGATAAAAGGACCTACCCGGTTATCATTTGCTGATGAAATAGAAAATGAAACAGAGGATGAAAATGCAAGTTCTGGTGAGTGAATTGTGTTACAT
GTGTGTGACCAGGCATTGAACAATTTACTGACCAATTAGCCAATTTTTAAGACACAATGCCTCAGGGAAACAGAGA
Intron 4 GTATTTGTTT ... TGTTCTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.34 | 28.6 | 10.4 | 5 |
| A2 | 26.34 | 22.6 | 12 | 4 |
| A3 | 16.61 | 46.6 | 12.4 | 6 |
| A4 | 26.22 | 15.8 | 6 | 5 |
| A5 | 53.82 | 5.2 | 3 | 9 |
| A6 | 17.91 | 41.6 | 9 | 9 |
| A7 | 19.39 | 115.6 | 35.6 | 19 |
| A8 | 20.17 | 117.8 | 36.2 | 22 |
| A9 | 20.69 | 139.6 | 39.6 | 32 |
| A10 | 11.18 | 111 | 15.6 | 12 |
>TRINITY_DN123539_c0_g1_i3 from sample A1 / Example spliced isoformCAAATATTTGCCGTGGTTATCTCCCCGAAAATTGATCAGTCGAGGGTTATTACTGAGAATTTAACACAAATCCCTGCTCGTGGACGACGTATTTACAGCTTCTCAATCGGCAAATACGGGCGCAGGGGAGAGTATACAAATCTTGTAATTCATAGATTCATTTTAAGAGGAGGGGGAAGATGTCGGGCATGGGAGATGGA
TATGTGGGCACAGCCCAGGATGCCGTCAGAATTCGGAGGCTGGAGAAACAGAGGGAAGCCGAGAGAAAGCGCATCCAGGACTTGAAGAACAAATCCGCCTCTGGAGGACAGAACGGCCTTCTCCAGTTCGGCTCCGGCACTTCGGAGATACTTGAAACTGCGTTCAAAAAAGAAACTGTTGGTCTTGTCACAAGAGAGCA
ATATGTGGAGAAGCGAGTCAACCTCCGTACCAAAATTGAAGAAGAGGAGAAGGAGAAGCTTCAGAAACTTCAACAGGAAGAAGAGGAGCTTGAGAAGCAAAAGCGAAAGAAAAGGAGGATAAAAGGACCTACCCGGTTATCATTTGCTGATGAAATAGAAAATGAAACAGAGGATGAAAATGCAAGTTCTGATGAGGGGG
AGCGAAAGAAGAATAAACTTGGGCAGCTCGGTAAAGATCCAACAGTGGAGACAAGTTTCTTGCCTGATAGGGACTGGAGGACAATGCTTCAGGGAGCGGGAAGCTGAGGAACAGGCTGAACGTGAACGGTTGAGGAAGAAGTGGATGACTGAACAAGAGCATATTAGAAATGAACCATTGGAGATTACTTACAGTTATTG
GGATGGAGCAGGTCATCGAAGAGTTATTCAGGCTCGCAAAGGAGACACAATAGCTGAATTTCTCCGTGCTGTTCAGCAGCAACTTGCACCTGAGTTCAGAGAAATTCGGACAACTTCTGTAGAGAATTTACTCTATGTGAAGGAGGACCTCATCATTCCCCATCAACATAGCTTCTATGAGCTAATTACAAACAAGGCAA
GGGGCAAAAGTGGACCGCTTTTTCATTTTGACGTTCATGAAGACATTCGGACAACAGCTGATGCTACTATAGAGAAGGATGAGTCACATGCTGGAAAAGTTGTTGAACGACATTGGTATGAAAAGAACAAGCACATATTTCCGGCATCCAGATGGGAGATATATGATCCTACTAAGAAGTGGGAACGCTACACAATTCAC
GGGGATTAAATTTTAATGGCACTGTTGCTGTATTTAAGAATAGAATCGTAAATCATCCACAGGAGCTTGCTTGCCTTGAACATATTACTATTTGGTTTAGTTCAATGTAGAGCTGTCTGTATGATTTGGTTGCCATTCATGCAGCAAACGGAATTGGTCTTTTGCTTTCATTATGTGCCTATTAGACAGTTTGATGCTTG
CAGCTGAAGAGTTGGATAAGGAGTTTCTCATGGCATCCCAATGATAATCGATATACTAATTATTTTGCTTTTGGACTCTATGTTGAGTTGGTTTTATTTAAATTTGATTCTATACTTCTAGATTTATAACATATATGGCAAATGCATTGCTGCCCTGTATGCTTTGGAATCTGGATATATTTAGTGAATTTTATCTCAAG
ATGCATCCTATGTTAACCTGAGGAATTTTTGGTATACTTTGGATTTCTTTTTAGATATACATTGTAAGCAATTATGGGAACAT
>TRINITY_DN123539_c0_g1_i1 from sample A1 / Example unspliced isoform:CAAATATTTGCCGTGGTTATCTCCCCGAAAATTGATCAGTCGAGGGTTATTACTGAGAATTTAACACAAATCCCTGCTCGTGGACGACGTATTTACAGCTTCTCAATCGGCAAATACGGGCGCAGGGGAGAGTATACAAATCTTGTAATTCATAGATTCATTTTAAGAGGAGGGGGAAGATGTCGGGCATGGGAGATGGA
TATGTGGGCACAGCCCAGGATGCCGTCAGAATTCGGAGGCTGGAGAAACAGAGGGAAGCCGAGAGAAAGCGCATCCAGGACTTGAAGAACAAATCCGCCTCTGGAGGACAGAACGGCCTTCTCCAGTTCGGCTCCGGCACTTCGGAGATACTTGAAACTGCGTTCAAAAAAGAAACTGTTGGTCTTGTCACAAGAGAGCA
ATATGTGGAGAAGCGAGTCAACCTCCGTACCAAAATTGAAGAAGAGGAGAAGGAGAAGCTTCAGAAACTTCAACAGGAAGAAGAGGAGCTTGAGAAGCAAAAGCGAAAGAAAAGGAGGATAAAAGGACCTACCCGGTTATCATTTGCTGATGAAATAGAAAATGAAACAGAGGATGAAAATGCAAGTTCTGATGAGGGGG
AGCGAAAGAAGAATAAACTTGGGCAGCTCGGTAAAGATCCAACAGTGGAGACAAGTTTCTTGCCTGATAGgtatttgtttttcagtctaactttatagatgtgtagacagaaggaatagggtaggggattccatataatagtttactttgatctgtatagtatcaagtggtttaatcaccaatgcttgaaagatcccact
tcgtggaatttaacttgtgttctcaagGGACTGGAGGACAATGCTTCAGGGAGCGGGAAGCTGAGGAACAGGCTGAACGTGAACGGTTGAGGAAGAAGTGGATGACTGAACAAGAGCATATTAGAAATGAACCATTGGAGATTACTTACAGTTATTGGGATGGAGCAGGTCATCGAAGAGTTATTCAGGCTCGCAAAGGA
GACACAATAGCTGAATTTCTCCGTGCTGTTCAGCAGCAACTTGCACCTGAGTTCAGAGAAATTCGGACAACTTCTGTAGAGAATTTACTCTATGTGAAGGAGGACCTCATCATTCCCCATCAACATAGCTTCTATGAGCTAATTACAAACAAGGCAAGGGGCAAAAGTGGACCGCTTTTTCATTTTGACGTTCATGAAGA
CATTCGGACAACAGCTGATGCTACTATAGAGAAGGATGAGTCACATGCTGGAAAAGTTGTTGAACGACATTGGTATGAAAAGAACAAGCACATATTTCCGGCATCCAGATGGGAGATATATGATCCTACTAAGAAGTGGGAACGCTACACAATTCACGGGGATTAAATTTTAATGGCACTGTTGCTGTATTTAAGAATAG
AATCGTAAATCATCCACAGGAGCTTGCTTGCCTTGAACATATTACTATTTGGTTTAGTTCAATGTAGAGCTGTCTGTATGATTTGGTTGCCATTCATGCAGCAAACGGAATTGGTCTTTTGCTTTCATTATGTGCCTATTAGACAGTTTGATGCTTGCAGCTGAAGAGTTGGATAAGGAGTTTCTCATGGCATCCCAATG
ATAATCGATATACTAATTATTTTGCTTTTGGACTCTATGTTGAGTTGGTTTTATTTAAATTTGATTCTATACTTCTAGATTTATAACATATATGGCAAATGCATTGCTGCCCTGTATGCTTTGGAATCTGGATATATTTAGTGAATTTTATCTCAAGATGCATCCTATGTTAACCTGAGGAATTTTTGGTATACTTTGGA
TTTCTTTTTAGATATACATTGTAAGCAATTATGGGAACAT
Intron 5 GTATGTGTTT ... TTGAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.8 | 57.5 | 2 | 20 |
| A2 | 14.44 | 77 | 6 | 13 |
| A3 | 21.8 | 61 | 6 | 17 |
| A4 | 21.57 | 40 | 4 | 11 |
| A5 | 10.53 | 17 | 0 | 2 |
| A6 | 25.57 | 131 | 3 | 45 |
| A7 | 26.75 | 298.5 | 8 | 109 |
| A8 | 25.13 | 226.5 | 18 | 76 |
| A9 | 24.61 | 288 | 8 | 94 |
| A10 | 20.6 | 239 | 11 | 62 |
>TRINITY_DN109980_c0_g1_i5 from sample A3 / Example spliced isoformCAAATATTTGCCGTGGTTATCTCCCCGAAAATTGATCAGTCGAGGGTTATTACTGAGAATTTAACACAAATCCCTGCTCGTGGACGACGTATTTACAGCTTCTCAATCGGCAAATACGGGCGCAGGGGAGAGTATACAAATCTTGTAATTCATAGATTCATTTTAAGAGGAGGGGGAAGATGTCGGGCATGGGAGATGGA
TATGTGGGCACAGCCCAGGATGCCGTCAGAATTCGGAGGCTGGAGAAACAGAGGGAAGCGGAGAGAAAGCGCATCCAGGACTTGAAGAACAAATCCGCCTCTGGAGGACAGAACGGCCTTCTCCAGTTCGGCTCCGGCACTTCGGAGATACTTGAAACTGCGTTCAAAAAAGAAACTGTTGGTCTTGTCACAAGAGAGCA
ATATGTGGAGAAGCGAGTCAACCTCCGTACCAAAATTGAAGAAGAGGAGAAGGAGAAGCTTCAGAAACTTCAACAGGAAGAAGAGGAGCTTGAGAAGCAAAAGCGAAAGAAAAGGAGGATAAAAGGACCTACCCGGTTATCATTTGCTGATGAAATAGAAAATGAAACAGAGGATGAAAATGCAAGTTCTGATGAGGGGG
AGCGAAAGAAGAATAAACTTGGGCAGCTCGGTAAAGATCCAACAGTGGAGACAAGTTTCTTGCCTGATAGGGAGCGGGAAGCTGAGGAACAGGCTGAACGTGAACGGTTGAGGAAGAAGTGGATGACTGAACAAGAGCATATTAGAAATGAACCATTGGAGATTACTTACAGTTATTGGGATGGAGCAGGTCATCGAAGA
GTTATTCAGGCTCGCAAAGGAGACACAATAGCTGAATTTCTCCGTGCTGTTCAGCAGCAACTTGCACCTGAGTTCAGAGAAATTCGGACAACTTCTGTAGAGAATTTACTCTATGTGAAGGAGGACCTCATCATTCCCCATCAACATAGCTTCTATGAGCTAATTACAAACAAGGCAAGGGGCAAAAGTGGACCGCTTTT
TCATTTTGACGTTCATGAAGACATTCGGACAACAGCTGATGCTACTATAGAGAAGGATGAGTCACATGCTGGAAAAGTTGTTGAACGACATTGGTATGAAAAGAACAAGCACATATTTCCGGCATCCAGATGGGAGATATATGATCCTACTAAGAAGTGGGAACGCTACACAATTCACGGGGATTAAATTTTAATGGCAC
TGTTGCTGTATTTAAGAATAGAATCGTAAATCATCCACAGGAGCTTGCTTGCCTTGAACATATTACTATTTGGTTTAGTTCAATGTAGAGCTGTCTGTATGATTTGGTTGCCATTCATGCAGCAAACGGAATTGGTCTTTTGCTTTCATTATGTGCCTATTAGACAGTTTGATGCTTGCAGCTGAAGAGTTGGATAAGGA
GTTTCTCATGGCATCCCAATGATAATCGATATACTAATTATTTTGCTTTTGGACTCTATGTTGAGTTGGTTTTATTTAAATTTGATTCTATACTTCTAGATTTATAACATATATGGCAAATGCATTGCTGCCCTGTATGCTTTGGAATCTGGATATATTTAGTGAATATTATCTCAAGATGCATCCTATGTTAACCTGAG
GAATTTTTGGTATACTTTGGATTTCTTTGTAGATATACATTGTAAGCAATTATGGGAACATGTTATAAGGTGAACAAATTTTAGTATCGAAAGGGAGG
>TRINITY_DN109980_c0_g1_i1 from sample A3 / Example unspliced isoform:CATTTAGATTTTATGATGAATAATCCTATTTATCCTTATGAAGATGAGGGGGAGCGAAAGAAGAATAAACTTGGGCAGCTCGGTAAAGATCCAACAGTGGAGACAAGTTTCTTGCCTGACAGGGACTGGAGGACAATGCTTCAGGGAGCGGGAAGCTGAGGAACAGGCTGAACGTGAACGGTTGAGGAAGAAGTGGATGA
CTGAACAAGAGCATATTAGAAgtatgtgttttgctgtacatcatgccagtgtcctatgtagcaataatttttcgtaaatagatgtttgtcatggttgcagtataattgcttttcagctttcatctatagaatatataaactcacttacaaattgaatgcagATGAACCATTGGAGATTACTTACAGTTATTGGGATGGAG
CAGGTCATCGAAGAGTTATTCAGGCTCGCAAAGGAGACACAATAGCTGAATTTCTCCGTGCTGTTCAGCAGCAACTTGCACCTGAGTTCAGAGAAATTCGGACAACTTCTGTAGAGAATTTACTCTATGTGAAGGAGGACCTCATCATTCCCCATCAACATAGCTTCTATGAGCTAATTACAAACAAGGCAAGGGGCAAA
AGTGGACCGCTTTTTCATTTTGACGTTCATGAAGACATTCGGACAACAGCTGATGCTACTATAGAGAAGGATGAGTCACATGCTGGAAAAGTTGTTGAACGACATTGGTATGAAAAGAACAAGCACATATTTCCGGCATCCAGATGGGAGATATATGATCCTACTAAGAAGTGGGAACGCTACACAATTCACGGGGATTA
AATTTTAATGGCACTGTTGCTGTATTTAAGAATAGAATCGTAAATCATCCACAGGAGCTTGCTTGCCTTGAACATATTACTATTTGGTTTAGTTCAATGTAGAGCTGTCTGTATGATTTGGTTGCCATTCATGCAGCAAACGGAATTGGTCTTTTGCTTTCATTATGTGCCTATTAGACAGTTTGATGCTTGCAGCTGAA
GAGTTGGATAAGGAGTTTCTCATGGCATCCCAATGATAATCGATATACTAATTATTTTGCTTTTGGACTCTATGTTGAGTTGGTTTTATTTAAATTTGATTCTATACTTCTAGATTTATAACATATATGGCAAATGCATTGCTGCCCTGTATGCTTTGGAATCTGGATATATTTAGTGAATATTATCTCAAGATGCATCC
TATGTTAACCTGAGGAATTTTTGGTATACTTTGGATTTCTTTGTAGATATACATTGTAAGCAATTATGGGAACATGTTATAAGGTGAACAAATTTTAGTATCGAAAGGGAGG
Intron 6 GTGAGGATTG ... CTTCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.24 | 50 | 0 | 16 |
| A2 | 20.9 | 53 | 0 | 14 |
| A3 | 28.26 | 33 | 0 | 13 |
| A4 | 28 | 36 | 0 | 14 |
| A5 | 21.43 | 22 | 0 | 6 |
| A6 | 20 | 84 | 0 | 21 |
| A7 | 19.39 | 166.3 | 0 | 40 |
| A8 | 21.12 | 254 | 0 | 68 |
| A9 | 25.76 | 219 | 0 | 76 |
| A10 | 27.18 | 139.3 | 0 | 52 |
>TRINITY_DN39474_c0_g2_i4 from sample A9 / Example spliced isoformGGCCGAACCAAATATTTGCCGTGGTTATCTCCCCGAAAATTGATCAGTCGAGGGTTATTACTGAGAATTTAACACAAATCCCTGCTCGTGGACGACGTATTTACAGCTTCTCAATCGGCAAATACGGGCGCAGGGGAGAGTATACAAATCTTGTAATTCATAGATTCATTTTAAGAGGAGGGGGAAGATGTCGGGCATGG
GAGATGGATATGTGGGCACAGCCCAGGATGCCGTCAGAATTCGGAGGCTGGAGAAACAGAGGGAAGCGGAGAGAAAGCGCATCCAGGACTTGAAGAACAAATCCGCCTCTGGAGGACAGAACGGCCTTCTCCAGTTCGGCTCCGGCACTTCGGAGATACTTGAAACTGCATTCAAAAAAGAAACTGTTGGTCTTGTCACA
AGAGAGCAATATGTGGAGAAGCGAGTCAACCTCCGTACCAAAATTGAAGAAGAGGAGAAGGAGAAGCTTCAGAAACTTCAACAGGAAGAAGAGGAGCTTGAGAAGCAAAAGCGAAAGAAAAGGAGGATAAAAGGACCTACCCGGTTATCATTTGCTGATGAAATAGAAAATGAAACAGAGGATGAAAATGCAAGTTCTGA
TGAGGGGGAGCGAAAGAAGAATAAACTTGGGCAGCTCGGTAAAGATCCAACAGTGGAGACAAGTTTCTTGCCTGATAGGGAGCGGGAAGCTGAGGAACAGGCTGAACGTGAACGGTTGAGGAAGAAGTGGATGACTGAACAAGAGCATATTAGAAATGAACCATTGGAGATTACTTACAGTTATTGGGATGGAGCAGGTC
ATCGAAGAGTTATTCAGGCTCGCAAAGGAGACACAATAGCTGAATTTCTCCGTGCTGTTCAGCAGCAACTTGCACCTGAGTTCAGAGAAATTCGGACAACTTCTGTAGAGAATTTACTCTATGTGAAGGAGGACCTCATCATTCCCCATCAACATAGCTTCTATGAGCTAATTACAAACAAGGCAAGGGGCAAAAGTGGA
CCGCTTTTTCATTTTGACGTTCATGAAGACATTCGGACAACAGCTGATGCTACTATAGAGAAGGATGAGTCACATGCTGGAAAAGTTGTTGAACGACATTGGTATGAAAAGAACAAGCACATATTTCCGGCATCCAGATGGGAGATATATGATCCTACTAAGAAGTGGGAACGCTACACAATTCACGGGGATTAAATTTT
AATGGCACTGTTGCTGTATTTAAGAATAGAATCGTAAATCATCCACAGGAGCTTGCTTGCCTTGAACATATTACTATTTGGTTTAGTTCAATGTAGAGCTGTCTGTATGATTTGGTTGCCATTCATGCAGCAAACGGAATTGGTCTTTTGCTTTCATTATGTGCCTATTAGACAGTTTGATGCTTGCAGCTGAAGAGTTG
GATAAGGAGTTTCTCATGGCATCCCAATGATAATCGATATACTAATTATTTTGCTTTTGGACTCTATGTTGAGTTGGTTTTATTTAAATTTGATTCTATACTTCTAGATTTATAACATATATGGCAAATGCATTGCCCTGTATGCTTTGGAATCTGGATATATTTAGTGAATATTATCTCAAGATGCATCCTATGTTAAC
CTGAGGAATTTTTGGTATACTTTGGATTTCTTTGTAGATATACATTGTAAGCAATTATGGGAACATGTTATAAGGTGAACAAATTTTAGTATCGAAAGGGATATGAACATTTATGTGAAAGCAATTATGGTCATTATTCAAG
>TRINITY_DN39474_c0_g2_i2 from sample A9 / Example unspliced isoform:AGGCAAGGGGCAAAAGTGGACCGgtgaggattgcaccttgttttagcaattcttatataactgccctgtttatttgttctaaaacaccgttgtgattactgtgagggtatgcttcttgcagCTTTTTCATTTTGACGTTCATGAAGACATTCGGACAACAGCTGATGCTACTATAGAGAAGGATGAGTCACATGCTGGAA
AAGTTGTTGAACGACATTGGTATGAAAAGAACAAGCACATATTTCCGGCATCCAGATGGGAGATATATGATCCTACTAAGAAGTGGGAACGCTACACAATTCACGGGGATTAAATTTTAATGGCACTGTTGCTGTATTTAAGAATAGAATCGTAAATCATCCACAGGAGCTTGCTTGCCTTGAACATATTACTATTTGGT
TTAGTTCAATGTAGAGCTGTCTGTATGATTTGGTTGCCATTCATGCAGCAAACGGAATTGGTCTTTTGCTTTCATTATGTGCCTATTAGACAGTTTGATGCTTGCAGCTGAAGAGTTGGATAAGGAGTTTCTCATGGCATCCCAATGATAATCGATATACTAATTATTTTGCTTTTGGACTCTATGTTGAGTTGGTTTTA
TTTAAATTTGATTCTATACTTCTAGATTTATAACATATATGGCAAATGCATTGCCCTGTATGCTTTGGAATCTGGATATATTTAGTGAATATTATCTCAAGATGCATCCTATGTTAACCTGAGGAATTTTTGGTATACTTTGGATTTCTTTGTAGATATACATTGTAAGCAATTATGGGAACATGTTATAAGGTGAACAA
ATTTTAGTATCGAAAGGGATATGAACATTTATGTGAAAGCAATTATGGTCATTATTCAAG