sp|Q9LT17|BBR_ARATH ----> E3 ubiquitin ligase BIG BROTHER-related
Intron 1 GTGATTCAAG ... TCTGATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.87 | 209 | 96 | 21 |
| A2 | 21.82 | 172 | 78 | 18 |
| A3 | 22.84 | 223 | 116 | 16 |
| A4 | 24.66 | 165 | 85 | 23 |
| A5 | 22.71 | 97 | 47 | 10 |
| A6 | 15.78 | 998 | 272 | 102 |
| A7 | 18.02 | 1226 | 399 | 140 |
| A8 | 17.39 | 1637 | 484 | 205 |
| A9 | 18.39 | 1278 | 412 | 164 |
| A10 | 15.53 | 1020 | 297 | 78 |
>TRINITY_DN127657_c2_g2_i10 from sample A1 / Example spliced isoformCGTTAATTGAGAATTCTTAAATATGCAGGGCTCCTCCAAGATTCCGTGCAACCTCTCTCCGTTAATTGAGAATTCCTAAATTATTATATATAGGATATTGGCGCCAAAGCTTAAACGAAGAAAGCGAAACCAACCATATGCGCACTGTTATTAAAGCAATCCTATACATTCGTGGGTAACTGCACTGTTACAGAGAATCG
CCAGAGGCAGAAGCCCAGAACGGGCAAAATCGCGAAAAAATCAGTTGCGCGTGAGAAATCTTGCCAGAGTCGAACCTGTCCCGTCCAATGTAAGTATTATTTTTCCCAATTTATTTTCCATTCTACTTTGGGGTTTTGTAGAAAACATGGCTATTCATTTTCTGCTGTGAATTCCATAAATTTAGGGTTCACATGAAACG
ATCAGAGTTGGCAGCTAATGTAATGGGTTTTTCTTTCACTTCTCGATTTTATCGAGTTCTTTCCTGTAAAACTAGCCTTCATTTGTTCGACCGTTGCAATGGGATCCGGATATTCTTATCAGGTTGAGTGGCTCTACCTTAGCGGGGTTCTTTTTTCGCTAACAGAATTGCGGCTCTCAGTGCAGATTGCGACTCCTGAA
CTGCTGTACTGCTGTGGTGGCTACTCACTTCTTTCTGCCCGTTCACATCCGGTCTGTTGGGGCATATTAGGTATTTGGGTTAGAAACTTACACTCAAGTTCTTCTATCATGGAGGAGGATAAGAGGGAGAATGTTGAAGCTAAACGTAGAGAGTTTACAGATGATGAAATGAATGAAAAAGGGGCACAACCAGAACCATC
TACAAGTTCGGTTTTTGATTTAGCATTTGAGCAATCTTCAAGGCAACCATTCACTGCCCTTAGTCAAGAAGATTCAGACTTGGCCCTCGCACGAGCTTTGCAAGAACAGGAAAGGGCATATATGCTGCTTCGAAGGAATGCAGAATCTAGTGACTACGAGACTTCTGGGAGTGGCAATTATGATCATGAATATTATATAG
ATGATAGCGGTGAGAATGAAGATGAGGTTGATGCTAATGCTGATGAATTCCAAAGGGAAGCATTGGCTGATGGTCACCATGAAGAGGTTGATGCCTCTTTATTTGAAAGTGATGAAGCATATGCGAGGGCACTTCAGGAAGCCGAGGACCGTCTACTGACAGCTCAAATGATGGCTTTGGCTGGCATTAATGACCGGGAG
GAGGATGACAATGAAGACAATGATAGCACTTCACGGGATGCATGGCAAGATGTAGATCCTGACAATATGTTGTATGAGGAACTGGTTGCTTTGAGTGAAGTTGTTGGGACCCAGAGTAGAGGTCTTGCTCCAGATTTGATCACCTCTTTGCCTTTGTCTAAATATGTGCCAGAAAGTCCAAGTGCAAGCAACTCTGAGAA
GTGTGTCATCTGTCATCTGGAATACGAGGGAGGGGACTTAATACTGACTCTTCCATGCAAGCATCAATACCATTCAGATTGCATAAAAAGTTGGCTTCAAATAAATAAGGTATGCCCAGTTTGTAATGTGGAGGTCTCTGATAGAACAAATCATTGACATGGATAGCTACCTAGTTTAGCTATTAACTTTCAGTATATAA
GCTTGGCTATATTTCTGGAGCAACTTGTAATTTAGTTGGTAAAAAACTTCATTTTTATTGGGATGTTAAGACAGGCCCTTCTGCATTGAATATCAAGAACTGAAACCATTATATGCTCGTAATACAGAGCTGGAATCGATGGTTTATCAAACCATAAAGCAAACAAGCATAGAAAACAAGATGCCAATTATTGGAACTGG
GATAATTTTCCATTTTAAACTTATTTGATTCCTTTTAGATGCACTCCATAATTATCTCATCCGATAGTTGCTGTCAAGCCAACTAATCTTTGTAGTGGTATGAGAGAGATTACTTGAGATAGAACCATGCTTTTTACTTTGTTATTTCTTGGACTATGTTATTGTTTTCCAAAAAAAGAAGAAATCCAACAACGCCTGTG
ATAAAAAATAGTGTGAAGCATGACAGAACAGAAAGATTTCCTTGCTGTCCATCACAATTCATTGTACAAATAGCAATGAATTGTTAATTGTGGTATAAGAGGGAAATTACCTGAAATTGACTGCCTTTTTCATTGTTATTTCTTGGACTTGGTTACTGTTTTTTAAAGAAAGAAGAAAAATGCAAACACCAGTGATTAAA
ATAGTGCAAATCATGATGGGAAAAATTAGATCACCTTGCTTCCCATTAAATTTAGTTGTACAGATTCCAATGAATAGTCCATGTAAAGGTTTAGGAACACCAGAAAATCAGTTGGAAGGAAATTTTTGTGTGTAATTTGTTTCCTGCTTTCTTTAGTTAGAGATGTTTTTTGTCTCTAGATATCTGTCATTTAATAGGTG
GTGTCCTAGGCATGCAGGATGGCAATGGAAACCACCAGGATAGTGAATTCAATAATGTTCCTGTCACTTCTTTTTGCCGTATTGTGGTTAGAGCCCCCAGCCGATTATAAGTTGCTGGTAAATTGAAATTGGGATATTTTTCCATTTGATGCCGTTTATACATGCTCCATAATTATATGAACCAAGTGTCTATCAAAGTA
ACTAATCTTCATGCTGCTATGAGAAATTTCTTGAAATTGAAACATACTTTGTTCTTTGTTATTTCTTGGACTTGGTTATTGTTTTTGGAAGAAAAAATTGCAAACACTAGTGATAAAAATAGTGTAAATTGTGTCCAAAAAACTAGATTTGTTTGCGGTCCATCAAACATGGTTGTGATAGTACTGAGTGTAATTCTATT
TTACACTAAAAACAGTTGGAAGAAATCTTTTGCGTGGAATTGATCTAGAAATGTTTTGAAGGTTTTGCAAATTGAAAGTTGGTAACCATGTTTTTTTTTCTTTCTAAATTGCTGTCATTTGATAGGTAGCGTCTTACATATGCAAGATG
>TRINITY_DN127657_c2_g2_i7 from sample A1 / Example unspliced isoform:CGTTAATTGAGAATTCTTAAATATGCAGGGCTCCTCCAAGATTCCGTGCAACCTCTCTCCGTTAATTGAGAATTCCTAAATTATTATATATAGGATATTGGCGCCAAAGCTTAAACGAAGAAAGCGAAACCAACCATATGCGCACTGTTATTAAAGCAATCCTATACATTCGTGGGTAACTGCACTGTTACAGGTGCGCA
CTGTGAAGGGGTCTCGACTTTGGCGAGGTGTTTTTTTTTTAAATTTTAAGTGCTTTTATTTTCATCGTAACTTTGTCCAGAGAATCGCCAGAGGCAGAAGCCCAGAACGGGCAAAATCGCGAAAAAATCAGTTGCGCGTGAGAAATCTTGCCAGAGTCGAACCTGTCCCGTCCAATTGCAGATTGCGACTCCTGAACTGC
TGTACTGCTGTGGTGGCTACTCACTTCTTTCTGCCCGTTCACATCCGGTCTGTTGGGGCATATTAGGTATTTGGGTTAGAAACTTACACTCAAGTTCTTCTATCATGGAGGAGGATAAGAGGGAGAATGTTGAAGCTAAACGTAGAGAGTTTACAGATGATGAAATGAATGAAAAAGGGGCACAACCAGAACCATCTACA
AGTTCGGTTTTTGATTTAGCATTTGAGCAATCTTCAAGGCAACCATTCACTGCCCTTAGTCAAGAAGATTCAGACTTGGCCCTCGCACGAGCTTTGCAAGAACAGGAAAGGGCATATATGCTGCTTCGAAGGAATGCAGAATCTAGTGACTACGAGACTTCTGGGAGTGGCAATTATGATCATGAATATTATATAGATGA
TAGCGGTGAGAATGAAGATGAGGTTGATGCTAATGCTGATGAATTCCAAAGGGAAGCATTGGCTGATGGTCACCATGAAGAGGTTGATGCCTCTTTATTTGAAAGTGATGAAGCATATGCGAGGGCACTTCAGGAAGCCGAGGACCGTCTACTGACAGCTCAAATGATGGCTTTGGCTGGCATTAATGACCGGGAGGAGG
ATGACAATGAAGACAATGATAGCACTTCACGGGATGCATGGCAAGATGTAGATCCTGACAATATGTTGTATGAGGAACTGGTTGCTTTGAGTGAAGTTGTTGGGACCCAGAGTAGAGGTCTTGCTCCAGATTTGATCACCTCTTTGCCTTTGTCTAAATATGTGCCAGAAAGTCCAAGTGCAAGCAACTCTGAGAAGTGT
GTCATCTGTCATCTGGAATACGAGGGAGGGGACTTAATACTGACTCTTCCATGCAAGCATCAATACCATTCAGATTGCATAAAAAGTTGGCTTCAAATAAATAAGgtgattcaagcgcttttactgtgttaaatattactgcttgcatctactatgtttcaattaaaaattatggttgctattttcagtgttaggatttt
tccctggaatgtttatatcctattatctctcaaattcctgtttctgatgcagGTATGCCCAGTTTGTAATGTGGAGGTCTCTGATAGAACAAATCATTGACATGGATAGCTACCTAGTTTAGCTATTAACTTTCAGTATATAAGCTTGGCTATATTTCTGGAGCAACTTGTAATTTAGTTGGTAAAAAACTTCATTTTTA
TTGGGATGTTAAGACAGGCCCTTCTGCATTGAATATCAAGAACTGAAACCATTATATGCTCGTAATACAGAGCTGGAATCGATGGTTTATCAAACCATAAAGCAAACAAGCATAGAAAACAAGATGCCAATTATTGGAACTGGGATAATTTTCCATTTTAAACTTATTTGATTCCTTTTAGATGCACTCCATAATTATCT
CATCCGATAGTTGCTGTCAAGCCAACTAATCTTTGTAGTGGTATGAGAGAGATTACTTGAGATAGAACCATGCTTTTTACTTTGTTATTTCTTGGACTATGTTATTGTTTTCCAAAAAAAGAAGAAATCCAACAACGCCTGTGATAAAAAATAGTGTGAAGCATGACAGAACAGAAAGATTTCCTTGCTGTCCATCACAA
TTCATTGTACAAATAGCAATGAATTGTTAATTGTGGTATAAGAGGGAAATTACCTGAAATTGACTGCCTTTTTCATTGTTATTTCTTGGACTTGGTTACTGTTTTTTAAAGAAAGAAGAAAAATGCAAACACCAGTGATTAAAATAGTGCAAATCATGATGGGAAAAATTAGATCACCTTGCTTCCCATTAAATTTAGTT
GTACAGATTCCAATGAATAGTCCATGTAAAGGTTTAGGAACACCAGAAAATCAGTTGGAAGGAAATTTTTGTGTGTAATTTGTTTCCTGCTTTCTTTAGTTAGAGATGTTTTTTGTCTCTAGATATCTGTCATTTAATAGGTGGTGTCCTAGGCATGCAGGATGGCAATGGAAACCACCAGGATAGTGAATTCAATAATG
TTCCTGTCACTTCTTTTTGCCGTATTGTGGTTAGAGCCCCCAGCCGATTATAAGTTGCTGGTAAATTGAAATTGGGATATTTTTCCATTTGATGCCGTTTATACATGCTCCATAATTATATGAACCAAGTGTCTATCAAAGTAACTAATCTTCATGCTGCTATGAGAAATTTCTTGAAATTGAAACATACTTTGTTCTTT
GTTATTTCTTGGACTTGGTTATTGTTTTTGGAAGAAAAAATTGCAAACACTAGTGATAAAAATAGTGTAAATTGTGTCCAAAAAACTAGATTTGTTTGCGGTCCATCAAACATGGTTGTGATAGTACTGAGTGTAATTCTATTTTACACTAAAAACAGTTGGAAGAAATCTTTTGCGTGGAATTGATCTAGAAATGTTTT
GAAGGTTTTGCAAATTGAAAGTTGGTAACCATGTTTTTTTTTCTTTCTAAATTGCTGTCATTTGATAGGTAGCGTCTTACATATGCAAGATG
Intron 2 GTGCGCACTG ... CTTTGTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.49 | 125 | 172 | 324.5 |
| A2 | 61.7 | 130 | 128 | 291.5 |
| A3 | 65 | 130 | 162 | 321.3 |
| A4 | 57.23 | 139 | 139 | 233.3 |
| A5 | 64.26 | 69 | 87 | 161.5 |
| A6 | 63.07 | 148 | 164 | 342 |
| A7 | 64.37 | 331 | 391 | 805.8 |
| A8 | 60.55 | 180 | 190 | 363.2 |
| A9 | 60.25 | 345 | 352 | 695.2 |
| A10 | 63.79 | 347 | 420 | 803.8 |
>TRINITY_DN114931_c1_g2_i1 from sample A2 / Example spliced isoformCCTTTCTCCGTTAATTGAGAATTCTTAAATATGCAGGGCTCCTCCAAGATTCCGTGCAACCTCTCTCCGTTAATTGAGAATTCCTAAATTATTATATATAGGATATTGGCGCCAAAGCTTAAACGAAGAAAGCGAAACCAACCATATGCGCACTGTTATTAAAGCAATCCTATACATTCGTGGGTAACTGCACTGTTACA
GAGAATCGCCAGAGGCAGAAGCCCAGAACGGGCAAAATCGCGAAAAAATCAGTTGCGCGTGAGAAATCTTGCCAGAGTCGAACCTGTCCCGTCCAATTGCAGATTGCGACTCCTGAACTGCTGTACTGCTGTGGTGGCTACTCACTTCTTTCTGCCCGTTCACATCCGGTCTGTTGGGGCATATTAGGTATTTGGGTTAG
AAACTTACACTCAAGTTCTTCTATCATGGAGGAGGATAAGAGGGAGAATGTTGAAGCTAAACGTAGAGAGTTTACAGATGATGAAATGAATGAAAAAGGGGCACAACCAGAACCATCTACAAGTTCGGTTTTTGATTTAGCATTTGAGCAATCTTCAAGGCAACCATTCACTGCCCTTAGTCAAGAAGATTCAGACTTGG
CCCTCGCACGAGCTTTGCAAGAACAGGAAAGGGCATATATGCTGCTTCGAAGGAATGCAGAATCTAGTGACTACGAGACTTCTGGGAGTGGCAATTATGATCATGAATATTATATAGATGATAGCGGTGAGAATGAAGATGAGGTTGATGCTAATGCTGATGAATTCCAAAGGGAAGCATTGGCTGATGGTCACCATGAA
GAGGTTGATGCCTCTTTATTTGAAAGTGATGAAGCATATGCGAGGGCACTTCAGGAAGCCGAGGACCGTCTACTGACAGCTCAAATGATGGCTTTGGCTGGCATTAATGACCGGGAGGAGGATGACAATGAAGACAATGATAGCACTTCACGGGATGCATGGCAAGATGTAGATCCTGACAATATGTTGTATGAGGAACT
GGTTGCTTTGAGTGAAGTTGTTGGGACCCAGAGTAGAGGTCTTGCTCCAGATTTGATCACCTCTTTGCCTTTGTCTAAATATGTGCCAGAAAGTCCAAGTGCAAGCAACTCTGAGAAGTGTGTCATCTGTCATCTGGAATACGAGGGAGGGGACTTAATACTGACTCTTCCATGCAAGCATCAATACCATTCAGATTGCA
TAAAAAGTTGGCTTCAAATAAATAAGGTATGCCCAGTTTGTAATGTGGAGGTCTCTGATAGAACAAATCATTGACATGGATAGCTACCTAGTTTAGCTATTAACTTTCAGTATATAAGCTTGGCTATATTTCTGGAGCAACTTGTAATTTAGTTGGTAAAAAACTTCATTTTTATTGGGATGTTAAGACAGGCCCTTCTG
CATTGAATATCAAGAACTGAAACCATTATATGCTTGTAATACAGAGCTGGAATGGATGGTTTATCAAACCATAAAGCAAACAAGCATAGAAAACAAGATGCCAATTATTGGAACTGGGATAATTTTCCATTTTAAACTTATTTGATTCCTTTTAGATGCACTCCATAATTATCTCATCCGATAGTTGCTGTCAAGCCAAC
TAATCTTTGTAGTGGTATGAGAGAGATTACTTGAGATAGAACCATGCTTTTTACTTTGTTATTTCTTGGACTATGTTATTGTTTTCCAAAAAAAGAAGAAATCCAACAACGCCTGTGATAAAAAATAGTGTGAAGCATGACAGAACAGAAAGATTTCCTTGCTGTCCATCACAATTCATTGTACAAATAGCAATGAATTG
TTAATTGTGGTATAAGAGGGAAATTACCTGAAATTGACTGCCTTTTTCATTGTTAT
>TRINITY_DN114931_c1_g2_i2 from sample A2 / Example unspliced isoform:CCTTTCTCCGTTAATTGAGAATTCTTAAATATGCAGGGCTCCTCCAAGATTCCGTGCAACCTCTCTCCGTTAATTGAGAATTCCTAAATTATTATATATAGGATATTGGCGCCAAAGCTTAAACGAAGAAAGCGAAACCAACCATATGCGCACTGTTATTAAAGCAATCCTATACATTCGTGGGTAACTGCACTGTTACA
GgtgcgcactgtgaaggggtctcgactttggcgaggtgttttttttttaaaattttaagtgcttttattttcatcgtaactttgtccagAGAATCGCCAGAGGCAGAAGCCCAGAACGGGCAAAATCGCGAAAAAATCAGTTGCGCGTGAGAAATCTTGCCAGAGTCGAACCTGTCCCGTCCAATTGCAGATTGCGACTC
CTGAACTGCTGTACTGCTGTGGTGGCTACTCACTTCTTTCTGCCCGTTCACATCCGGTCTGTTGGGGCATATTAGGTATTTGGGTTAGAAACTTACACTCAAGTTCTTCTATCATGGAGGAGGATAAGAGGGAGAATGTTGAAGCTAAACGTAGAGAGTTTACAGATGATGAAATGAATGAAAAAGGGGCACAACCAGAA
CCATCTACAAGTTCGGTTTTTGATTTAGCATTTGAGCAATCTTCAAGGCAACCATTCACTGCCCTTAGTCAAGAAGATTCAGACTTGGCCCTCGCACGAGCTTTGCAAGAACAGGAAAGGGCATATATGCTGCTTCGAAGGAATGCAGAATCTAGTGACTACGAGACTTCTGGGAGTGGCAATTATGATCATGAATATTA
TATAGATGATAGCGGTGAGAATGAAGATGAGGTTGATGCTAATGCTGATGAATTCCAAAGGGAAGCATTGGCTGATGGTCACCATGAAGAGGTTGATGCCTCTTTATTTGAAAGTGATGAAGCATATGCGAGGGCACTTCAGGAAGCCGAGGACCGTCTACTGACAGCTCAAATGATGGCTTTGGCTGGCATTAATGACC
GGGAGGAGGATGACAATGAAGACAATGATAGCACTTCACGGGTATCACTATTATTTCATGTTTTACCCAATGTGTTCTTTCCATTAGCGGATTGTAAATACTGTAAATGTTTATCCATATTGTTCTTTCCAAGTTGAGGGAGGGCTGTATTATTGGGTGCAGCCCCCATGTTTTTGGATGCTTCCAGCCAAATACATTGT
TATGCAAAAATGGCCTTGGAACCTTTTGTCTAGATACAACCCTTTTATGGCATCA
Intron 3 GTAAGTATTA ... CGGCTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.29 | 352.6 | 21.4 | 54 |
| A2 | 8.83 | 340.5 | 19.5 | 33 |
| A3 | 11.36 | 335.6 | 17.9 | 43 |
| A4 | 16.68 | 294.9 | 18.9 | 59 |
| A5 | 10.4 | 181 | 16.3 | 21 |
| A6 | 16.36 | 399 | 21.4 | 78 |
| A7 | 10.8 | 883.8 | 40.1 | 107 |
| A8 | 13.8 | 493.5 | 18.8 | 79 |
| A9 | 15.32 | 862.8 | 39.8 | 156 |
| A10 | 10.63 | 840.8 | 40.5 | 100 |
>TRINITY_DN127657_c2_g2_i7 from sample A1 / Example spliced isoformCGTTAATTGAGAATTCTTAAATATGCAGGGCTCCTCCAAGATTCCGTGCAACCTCTCTCCGTTAATTGAGAATTCCTAAATTATTATATATAGGATATTGGCGCCAAAGCTTAAACGAAGAAAGCGAAACCAACCATATGCGCACTGTTATTAAAGCAATCCTATACATTCGTGGGTAACTGCACTGTTACAGGTGCGCA
CTGTGAAGGGGTCTCGACTTTGGCGAGGTGTTTTTTTTTTAAATTTTAAGTGCTTTTATTTTCATCGTAACTTTGTCCAGAGAATCGCCAGAGGCAGAAGCCCAGAACGGGCAAAATCGCGAAAAAATCAGTTGCGCGTGAGAAATCTTGCCAGAGTCGAACCTGTCCCGTCCAATTGCAGATTGCGACTCCTGAACTGC
TGTACTGCTGTGGTGGCTACTCACTTCTTTCTGCCCGTTCACATCCGGTCTGTTGGGGCATATTAGGTATTTGGGTTAGAAACTTACACTCAAGTTCTTCTATCATGGAGGAGGATAAGAGGGAGAATGTTGAAGCTAAACGTAGAGAGTTTACAGATGATGAAATGAATGAAAAAGGGGCACAACCAGAACCATCTACA
AGTTCGGTTTTTGATTTAGCATTTGAGCAATCTTCAAGGCAACCATTCACTGCCCTTAGTCAAGAAGATTCAGACTTGGCCCTCGCACGAGCTTTGCAAGAACAGGAAAGGGCATATATGCTGCTTCGAAGGAATGCAGAATCTAGTGACTACGAGACTTCTGGGAGTGGCAATTATGATCATGAATATTATATAGATGA
TAGCGGTGAGAATGAAGATGAGGTTGATGCTAATGCTGATGAATTCCAAAGGGAAGCATTGGCTGATGGTCACCATGAAGAGGTTGATGCCTCTTTATTTGAAAGTGATGAAGCATATGCGAGGGCACTTCAGGAAGCCGAGGACCGTCTACTGACAGCTCAAATGATGGCTTTGGCTGGCATTAATGACCGGGAGGAGG
ATGACAATGAAGACAATGATAGCACTTCACGGGATGCATGGCAAGATGTAGATCCTGACAATATGTTGTATGAGGAACTGGTTGCTTTGAGTGAAGTTGTTGGGACCCAGAGTAGAGGTCTTGCTCCAGATTTGATCACCTCTTTGCCTTTGTCTAAATATGTGCCAGAAAGTCCAAGTGCAAGCAACTCTGAGAAGTGT
GTCATCTGTCATCTGGAATACGAGGGAGGGGACTTAATACTGACTCTTCCATGCAAGCATCAATACCATTCAGATTGCATAAAAAGTTGGCTTCAAATAAATAAGGTGATTCAAGCGCTTTTACTGTGTTAAATATTACTGCTTGCATCTACTATGTTTCAATTAAAAATTATGGTTGCTATTTTCAGTGTTAGGATTTT
TCCCTGGAATGTTTATATCCTATTATCTCTCAAATTCCTGTTTCTGATGCAGGTATGCCCAGTTTGTAATGTGGAGGTCTCTGATAGAACAAATCATTGACATGGATAGCTACCTAGTTTAGCTATTAACTTTCAGTATATAAGCTTGGCTATATTTCTGGAGCAACTTGTAATTTAGTTGGTAAAAAACTTCATTTTTA
TTGGGATGTTAAGACAGGCCCTTCTGCATTGAATATCAAGAACTGAAACCATTATATGCTCGTAATACAGAGCTGGAATCGATGGTTTATCAAACCATAAAGCAAACAAGCATAGAAAACAAGATGCCAATTATTGGAACTGGGATAATTTTCCATTTTAAACTTATTTGATTCCTTTTAGATGCACTCCATAATTATCT
CATCCGATAGTTGCTGTCAAGCCAACTAATCTTTGTAGTGGTATGAGAGAGATTACTTGAGATAGAACCATGCTTTTTACTTTGTTATTTCTTGGACTATGTTATTGTTTTCCAAAAAAAGAAGAAATCCAACAACGCCTGTGATAAAAAATAGTGTGAAGCATGACAGAACAGAAAGATTTCCTTGCTGTCCATCACAA
TTCATTGTACAAATAGCAATGAATTGTTAATTGTGGTATAAGAGGGAAATTACCTGAAATTGACTGCCTTTTTCATTGTTATTTCTTGGACTTGGTTACTGTTTTTTAAAGAAAGAAGAAAAATGCAAACACCAGTGATTAAAATAGTGCAAATCATGATGGGAAAAATTAGATCACCTTGCTTCCCATTAAATTTAGTT
GTACAGATTCCAATGAATAGTCCATGTAAAGGTTTAGGAACACCAGAAAATCAGTTGGAAGGAAATTTTTGTGTGTAATTTGTTTCCTGCTTTCTTTAGTTAGAGATGTTTTTTGTCTCTAGATATCTGTCATTTAATAGGTGGTGTCCTAGGCATGCAGGATGGCAATGGAAACCACCAGGATAGTGAATTCAATAATG
TTCCTGTCACTTCTTTTTGCCGTATTGTGGTTAGAGCCCCCAGCCGATTATAAGTTGCTGGTAAATTGAAATTGGGATATTTTTCCATTTGATGCCGTTTATACATGCTCCATAATTATATGAACCAAGTGTCTATCAAAGTAACTAATCTTCATGCTGCTATGAGAAATTTCTTGAAATTGAAACATACTTTGTTCTTT
GTTATTTCTTGGACTTGGTTATTGTTTTTGGAAGAAAAAATTGCAAACACTAGTGATAAAAATAGTGTAAATTGTGTCCAAAAAACTAGATTTGTTTGCGGTCCATCAAACATGGTTGTGATAGTACTGAGTGTAATTCTATTTTACACTAAAAACAGTTGGAAGAAATCTTTTGCGTGGAATTGATCTAGAAATGTTTT
GAAGGTTTTGCAAATTGAAAGTTGGTAACCATGTTTTTTTTTCTTTCTAAATTGCTGTCATTTGATAGGTAGCGTCTTACATATGCAAGATG
>TRINITY_DN127657_c2_g2_i9 from sample A1 / Example unspliced isoform:CGTTAATTGAGAATTCTTAAATATGCAGGGCTCCTCCAAGATTCCGTGCAACCTCTCTCCGTTAATTGAGAATTCCTAAATTATTATATATAGGATATTGGCGCCAAAGCTTAAACGAAGAAAGCGAAACCAACCATATGCGCACTGTTATTAAAGCAATCCTATACATTCGTGGGTAACTGCACTGTTACAGGTGCGCA
CTGTGAAGGGGTCTCGACTTTGGCGAGGTGTTTTTTTTTTAAATTTTAAGTGCTTTTATTTTCATCGTAACTTTGTCCAGAGAATCGCCAGAGGCAGAAGCCCAGAACGGGCAAAATCGCGAAAAAATCAGTTGCGCGTGAGAAATCTTGCCAGAGTCGAACCTGTCCCGTCCAATgtaagtattatttttcccaattta
ttttccattctactttggggttttgtagaaaacatggctattcattttctgctgtgaattccataaatttagggttcacatgaaacgatcagagttggcagctaatgtaatgggtttttctttcacttctcgattttatcgagttctttcctgtaaaactagccttcatttgttcgaccgttgcaatgggatccggatat
tcttatcaggttgagtggctctaccttagcggggttcttttttcgctaacagaattgcggctctcagTGCAGATTGCGACTCCTGAACTGCTGTACTGCTGTGGTGGCTACTCACTTCTTTCTGCCCGTTCACATCCGGTCTGTTGGGGCATATTAGGTATTTGGGTTAGAAACTTACACTCAAGTTCTTCTATCATGGA
GGAGGATAAGAGGGAGAATGTTGAAGCTAAACGTAGAGAGTTTACAGATGATGAAATGAATGAAAAAGGGGCACAACCAGAACCATCTACAAGTTCGGTTTTTGATTTAGCATTTGAGCAATCTTCAAGGCAACCATTCACTGCCCTTAGTCAAGAAGATTCAGACTTGGCCCTCGCACGAGCTTTGCAAGAACAGGAAA
GGGCATATATGCTGCTTCGAAGGAATGCAGAATCTAGTGACTACGAGACTTCTGGGAGTGGCAATTATGATCATGAATATTATATAGATGATAGCGGTGAGAATGAAGATGAGGTTGATGCTAATGCTGATGAATTCCAAAGGGAAGCATTGGCTGATGGTCACCATGAAGAGGTTGATGCCTCTTTATTTGAAAGTGAT
GAAGCATATGCGAGGGCACTTCAGGAAGCCGAGGACCGTCTACTGACAGCTCAAATGATGGCTTTGGCTGGCATTAATGACCGGGAGGAGGATGACAATGAAGACAATGATAGCACTTCACGGGATGCATGGCAAGATGTAGATCCTGACAATATGTTGTATGAGGAACTGGTTGCTTTGAGTGAAGTTGTTGGGACCCA
GAGTAGAGGTCTTGCTCCAGATTTGATCACCTCTTTGCCTTTGTCTAAATATGTGCCAGAAAGTCCAAGTGCAAGCAACTCTGAGAAGTGTGTCATCTGTCATCTGGAATACGAGGGAGGGGACTTAATACTGACTCTTCCATGCAAGCATCAATACCATTCAGATTGCATAAAAAGTTGGCTTCAAATAAATAAGGTAT
GCCCAGTTTGTAATGTGGAGGTCTCTGATAGAACAAATCATTGACATGGATAGCTACCTAGTTTAGCTATTAACTTTCAGTATATAAGCTTGGCTATATTTCTGGAGCAACTTGTAATTTAGTTGGTAAAAAACTTCATTTTTATTGGGATGTTAAGACAGGCCCTTCTGCATTGAATATCAAGAACTGAAACCATTATA
TGCTCGTAATACAGAGCTGGAATCGATGGTTTATCAAACCATAAAGCAAACAAGCATAGAAAACAAGATGCCAATTATTGGAACTGGGATAATTTTCCATTTTAAACTTATTTGATTCCTTTTAGATGCACTCCATAATTATCTCATCCGATAGTTGCTGTCAAGCCAACTAATCTTTGTAGTGGTATGAGAGAGATTAC
TTGAGATAGAACCATGCTTTTTACTTTGTTATTTCTTGGACTATGTTATTGTTTTCCAAAAAAAGAAGAAATCCAACAACGCCTGTGATAAAAAATAGTGTGAAGCATGACAGAACAGAAAGATTTCCTTGCTGTCCATCACAATTCATTGTACAAATAGCAATGAATTGTTAATTGTGGTATAAGAGGGAAATTACCTG
AAATTGACTGCCTTTTTCATTGTTATTTCTTGGACTTGGTTACTGTTTTTTAAAGAAAGAAGAAAAATGCAAACACCAGTGATTAAAATAGTGCAAATCATGATGGGAAAAATTAGATCACCTTGCTTCCCATTAAATTTAGTTGTACAGATTCCAATGAATAGTCCATGTAAAGGTTTAGGAACACCAGAAAATCAGTT
GGAAGGAAATTTTTGTGTGTAATTTGTTTCCTGCTTTCTTTAGTTAGAGATGTTTTTTGTCTCTAGATATCTGTCATTTAATAGGTGGTGTCCTAGGCATGCAGGATGGCAATGGAAACCACCAGGATAGTGAATTCAATAATGTTCCTGTCACTTCTTTTTGCCGTATTGTGGTTAGAGCCCCCAGCCGATTATAAGTT
GCTGGTAAATTGAAATTGGGATATTTTTCCATTTGATGCCGTTTATACATGCTCCATAATTATATGAACCAAGTGTCTATCAAAGTAACTAATCTTCATGCTGCTATGAGAAATTTCTTGAAATTGAAACATACTTTGTTCTTTGTTATTTCTTGGACTTGGTTATTGTTTTTGGAAGAAAAAATTGCAAACACTAGTGA
TAAAAATAGTGTAAATTGTGTCCAAAAAACTAGATTTGTTTGCGGTCCATCAAACATGGTTGTGATAGTACTGAGTGTAATTCTATTTTACACTAAAAACAGTTGGAAGAAATCTTTTGCGTGGAATTGATCTAGAAATGTTTTGAAGGTTTTGCAAATTGAAAGTTGGTAACCATGTTTTTTTTTCTTTCTAAATTGCT
GTCATTTGATAGGTAGCGTCTTACATATGCAAGATG
Intron 4 GTATGCCCAG ... TGTAATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 78.34 | 47 | 209 | 131 |
| A2 | 77.53 | 43 | 172 | 124.8 |
| A3 | 79.61 | 47 | 223 | 144 |
| A4 | 80.33 | 30 | 165 | 80 |
| A5 | 77.89 | 22 | 97 | 58 |
| A6 | 81.7 | 234 | 998 | 1092.4 |
| A7 | 80.59 | 298 | 1226 | 1248.8 |
| A8 | 79.63 | 468 | 1637 | 2021.4 |
| A9 | 79.93 | 338 | 1278 | 1414.8 |
| A10 | 80.87 | 219 | 1020 | 831 |
>TRINITY_DN114931_c1_g2_i5 from sample A2 / Example spliced isoformAAGTGCAAGCAACTCTGAGAAGTAAGAAACTTAGTGCCCGTGCTACATATTTTCATTTGTGCTTGCATGATTTTGGTATGTTTGGTTTCTTATTTATTAACCTATTCCATGCATAAAAATATTTTGAACTGCACTTATATGTTCACAAAGTGAATTAACATTCTGTCACAGTTTCTGTAAGTGGGCAAAACATTTTGTCA
CAGTTTCTAGCTTTGGCACTAATACCAAATGAGATCTCCGTTTACCTATCACTATGTGAATTTATTTGGCTAACTAATACCAAATGAGATCTCAGTTTACCTATCACTATGTGAATTTCTTTCGCTAATGTCAAACTATAATACTAATGTTATCTGTCTAAATATAGATAATTAGGATTAATAAAATTAATATAACAAAA
TTTATTGTAATGATAGGGTGAAAATGTTTGAAGTCCAAACAAATTAGGTGATGGATCCATGTCCCAGAATAATGAAATATGGTCTTGGATTATTAAACAATAAAGTTCTTATTTGTAATTTGTTAAATTATTTGGAAATGCAACTGAGATCATTGGTGGTTCTTTTTGTGTCAAAGAATTGAGATCATTATGTGGTAGTA
ATTTTAATTATATATTTCTTGACTAAGCTAAAATCTTCCACATCATTTTCTAGGTGTGTCATCTGTCATCTGGAATACGAGGGAGGGGACTTAATACTGACTCTTCCATGCAAGCATCAATACCATTCAGATTGCATAAAAAGTTGGCTTCAAATAAATAAGAGCTGGAATGGATGGTTTATCAAACCATAAAGCAAACA
AGCATAGAAAACAAGATGCCAATTATTGGAACTGGGATAATTTTCCATTTTAAACTTATTTGATTCCTTTTAGATGCACTCCATAATTATCTCATCCGATAGTTGCTGTCAAGCCAACTAATCTTTGTAGTGGTATGAGAGAGATTACTTGAGATAGAACCATGCTTTTTACTTTGTTATTTCTTGGACTATGTTATTGT
TTTCCAAAAAAAGAAGAAATCCAACAACGCCTGTGATAAAAAATAGTGTGAAGCATGACAGAACAGAAAGATTTCCTTGCTGTCCATCACAATTCATTGTACAAATAGCAATGAATTGTTAATTGTGGTATAAGAGGGAAATTACCTGAAATTGACTGCCTTTTTCATTGTTAT
>TRINITY_DN114931_c1_g2_i6 from sample A2 / Example unspliced isoform:CCTTTCTCCGTTAATTGAGAATTCTTAAATATGCAGGGCTCCTCCAAGATTCCGTGCAACCTCTCTCCGTTAATTGAGAATTCCTAAATTATTATATATAGGATATTGGCGCCAAAGCTTAAACGAAGAAAGCGAAACCAACCATATGCGCACTGTTATTAAAGCAATCCTATACATTCGTGGGTAACTGCACTGTTACA
GGTGCGCACTGTGAAGGGGTCTCGACTTTGGCGAGGTGTTTTTTTTTTAAAATTTTAAGTGCTTTTATTTTCATCGTAACTTTGTCCAGAGAATCGCCAGAGGCAGAAGCCCAGAACGGGCAAAATCGCGAAAAAATCAGTTGCGCGTGAGAAATCTTGCCAGAGTCGAACCTGTCCCGTCCAATTGCAGATTGCGACTC
CTGAACTGCTGTACTGCTGTGGTGGCTACTCACTTCTTTCTGCCCGTTCACATCCGGTCTGTTGGGGCATATTAGGTATTTGGGTTAGAAACTTACACTCAAGTTCTTCTATCATGGAGGAGGATAAGAGGGAGAATGTTGAAGCTAAACGTAGAGAGTTTACAGATGATGAAATGAATGAAAAAGGGGCACAACCAGAA
CCATCTACAAGTTCGGTTTTTGATTTAGCATTTGAGCAATCTTCAAGGCAACCATTCACTGCCCTTAGTCAAGAAGATTCAGACTTGGCCCTCGCACGAGCTTTGCAAGAACAGGAAAGGGCATATATGCTGCTTCGAAGGAATGCAGAATCTAGTGACTACGAGACTTCTGGGAGTGGCAATTATGATCATGAATATTA
TATAGATGATAGCGGTGAGAATGAAGATGAGGTTGATGCTAATGCTGATGAATTCCAAAGGGAAGCATTGGCTGATGGTCACCATGAAGAGGTTGATGCCTCTTTATTTGAAAGTGATGAAGCATATGCGAGGGCACTTCAGGAAGCCGAGGACCGTCTACTGACAGCTCAAATGATGGCTTTGGCTGGCATTAATGACC
GGGAGGAGGATGACAATGAAGACAATGATAGCACTTCACGGGATGCATGGCAAGATGTAGATCCTGACAATATGTTGTATGAGGAACTGGTTGCTTTGAGTGAAGTTGTTGGGACCCAGAGTAGAGGTCTTGCTCCAGATTTGATCACCTCTTTGCCTTTGTCTAAATATGTGCCAGAAAGTCCAAGTGCAAGCAACTCT
GAGAAGTGTGTCATCTGTCATCTGGAATACGAGGGAGGGGACTTAATACTGACTCTTCCATGCAAGCATCAATACCATTCAGATTGCATAAAAAGTTGGCTTCAAATAAATAAGgtatgcccagtttgtaatgtggaggtctctgatagaacaaatcattgacatggatagctacctagtttagctattaactttcagta
tataagcttggctatatttctggagcaacttgtaatttagttggtaaaaaacttcatttttattgggatgttaagacaggcccttctgcattgaatatcaagaactgaaaccattatatgcttgtaatacagAGCTGGAATGGATGGTTTATCAAACCATAAAGCAAACAAGCATAGAAAACAAGATGCCAATTATTGGA
ACTGGGATAATTTTCCATTTTAAACTTATTTGATTCCTTTTAGATGCACTCCATAATTATCTCATCCGATAGTTGCTGTCAAGCCAACTAATCTTTGTAGTGGTATGAGAGAGATTACTTGAGATAGAACCATGCTTTTTACTTTGTTATTTCTTGGACTATGTTATTGTTTTCCAAAAAAAGAAGAAATCCAACAACGC
CTGTGATAAAAAATAGTGTGAAGCATGACAGAACAGAAAGATTTCCTTGCTGTCCATCACAATTCATTGTACAAATAGCAATGAATTGTTAATTGTGGTATAAGAGGGAAATTACCTGAAATTGACTGCCTTTTTCATTGTTAT
Intron 5 GTGCGCACTG ... CTTTGTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 67.61 | 119.1 | 169 | 324.2 |
| A2 | 63.31 | 123.8 | 128 | 294.8 |
| A3 | 66.34 | 124.4 | 162 | 325.3 |
| A4 | 58.59 | 133.5 | 140 | 235.8 |
| A5 | 66.04 | 65.3 | 87 | 163.9 |
| A6 | 64.58 | 140.8 | 164 | 345.2 |
| A7 | 65.76 | 315.9 | 391 | 812.8 |
| A8 | 62.19 | 171.1 | 190 | 367.9 |
| A9 | 61.81 | 328.8 | 352 | 703.6 |
| A10 | 65.18 | 331.7 | 420 | 811.4 |
>TRINITY_DN127657_c2_g2_i10 from sample A1 / Example spliced isoformCGTTAATTGAGAATTCTTAAATATGCAGGGCTCCTCCAAGATTCCGTGCAACCTCTCTCCGTTAATTGAGAATTCCTAAATTATTATATATAGGATATTGGCGCCAAAGCTTAAACGAAGAAAGCGAAACCAACCATATGCGCACTGTTATTAAAGCAATCCTATACATTCGTGGGTAACTGCACTGTTACAGAGAATCG
CCAGAGGCAGAAGCCCAGAACGGGCAAAATCGCGAAAAAATCAGTTGCGCGTGAGAAATCTTGCCAGAGTCGAACCTGTCCCGTCCAATGTAAGTATTATTTTTCCCAATTTATTTTCCATTCTACTTTGGGGTTTTGTAGAAAACATGGCTATTCATTTTCTGCTGTGAATTCCATAAATTTAGGGTTCACATGAAACG
ATCAGAGTTGGCAGCTAATGTAATGGGTTTTTCTTTCACTTCTCGATTTTATCGAGTTCTTTCCTGTAAAACTAGCCTTCATTTGTTCGACCGTTGCAATGGGATCCGGATATTCTTATCAGGTTGAGTGGCTCTACCTTAGCGGGGTTCTTTTTTCGCTAACAGAATTGCGGCTCTCAGTGCAGATTGCGACTCCTGAA
CTGCTGTACTGCTGTGGTGGCTACTCACTTCTTTCTGCCCGTTCACATCCGGTCTGTTGGGGCATATTAGGTATTTGGGTTAGAAACTTACACTCAAGTTCTTCTATCATGGAGGAGGATAAGAGGGAGAATGTTGAAGCTAAACGTAGAGAGTTTACAGATGATGAAATGAATGAAAAAGGGGCACAACCAGAACCATC
TACAAGTTCGGTTTTTGATTTAGCATTTGAGCAATCTTCAAGGCAACCATTCACTGCCCTTAGTCAAGAAGATTCAGACTTGGCCCTCGCACGAGCTTTGCAAGAACAGGAAAGGGCATATATGCTGCTTCGAAGGAATGCAGAATCTAGTGACTACGAGACTTCTGGGAGTGGCAATTATGATCATGAATATTATATAG
ATGATAGCGGTGAGAATGAAGATGAGGTTGATGCTAATGCTGATGAATTCCAAAGGGAAGCATTGGCTGATGGTCACCATGAAGAGGTTGATGCCTCTTTATTTGAAAGTGATGAAGCATATGCGAGGGCACTTCAGGAAGCCGAGGACCGTCTACTGACAGCTCAAATGATGGCTTTGGCTGGCATTAATGACCGGGAG
GAGGATGACAATGAAGACAATGATAGCACTTCACGGGATGCATGGCAAGATGTAGATCCTGACAATATGTTGTATGAGGAACTGGTTGCTTTGAGTGAAGTTGTTGGGACCCAGAGTAGAGGTCTTGCTCCAGATTTGATCACCTCTTTGCCTTTGTCTAAATATGTGCCAGAAAGTCCAAGTGCAAGCAACTCTGAGAA
GTGTGTCATCTGTCATCTGGAATACGAGGGAGGGGACTTAATACTGACTCTTCCATGCAAGCATCAATACCATTCAGATTGCATAAAAAGTTGGCTTCAAATAAATAAGGTATGCCCAGTTTGTAATGTGGAGGTCTCTGATAGAACAAATCATTGACATGGATAGCTACCTAGTTTAGCTATTAACTTTCAGTATATAA
GCTTGGCTATATTTCTGGAGCAACTTGTAATTTAGTTGGTAAAAAACTTCATTTTTATTGGGATGTTAAGACAGGCCCTTCTGCATTGAATATCAAGAACTGAAACCATTATATGCTCGTAATACAGAGCTGGAATCGATGGTTTATCAAACCATAAAGCAAACAAGCATAGAAAACAAGATGCCAATTATTGGAACTGG
GATAATTTTCCATTTTAAACTTATTTGATTCCTTTTAGATGCACTCCATAATTATCTCATCCGATAGTTGCTGTCAAGCCAACTAATCTTTGTAGTGGTATGAGAGAGATTACTTGAGATAGAACCATGCTTTTTACTTTGTTATTTCTTGGACTATGTTATTGTTTTCCAAAAAAAGAAGAAATCCAACAACGCCTGTG
ATAAAAAATAGTGTGAAGCATGACAGAACAGAAAGATTTCCTTGCTGTCCATCACAATTCATTGTACAAATAGCAATGAATTGTTAATTGTGGTATAAGAGGGAAATTACCTGAAATTGACTGCCTTTTTCATTGTTATTTCTTGGACTTGGTTACTGTTTTTTAAAGAAAGAAGAAAAATGCAAACACCAGTGATTAAA
ATAGTGCAAATCATGATGGGAAAAATTAGATCACCTTGCTTCCCATTAAATTTAGTTGTACAGATTCCAATGAATAGTCCATGTAAAGGTTTAGGAACACCAGAAAATCAGTTGGAAGGAAATTTTTGTGTGTAATTTGTTTCCTGCTTTCTTTAGTTAGAGATGTTTTTTGTCTCTAGATATCTGTCATTTAATAGGTG
GTGTCCTAGGCATGCAGGATGGCAATGGAAACCACCAGGATAGTGAATTCAATAATGTTCCTGTCACTTCTTTTTGCCGTATTGTGGTTAGAGCCCCCAGCCGATTATAAGTTGCTGGTAAATTGAAATTGGGATATTTTTCCATTTGATGCCGTTTATACATGCTCCATAATTATATGAACCAAGTGTCTATCAAAGTA
ACTAATCTTCATGCTGCTATGAGAAATTTCTTGAAATTGAAACATACTTTGTTCTTTGTTATTTCTTGGACTTGGTTATTGTTTTTGGAAGAAAAAATTGCAAACACTAGTGATAAAAATAGTGTAAATTGTGTCCAAAAAACTAGATTTGTTTGCGGTCCATCAAACATGGTTGTGATAGTACTGAGTGTAATTCTATT
TTACACTAAAAACAGTTGGAAGAAATCTTTTGCGTGGAATTGATCTAGAAATGTTTTGAAGGTTTTGCAAATTGAAAGTTGGTAACCATGTTTTTTTTTCTTTCTAAATTGCTGTCATTTGATAGGTAGCGTCTTACATATGCAAGATG
>TRINITY_DN127657_c2_g2_i9 from sample A1 / Example unspliced isoform:CGTTAATTGAGAATTCTTAAATATGCAGGGCTCCTCCAAGATTCCGTGCAACCTCTCTCCGTTAATTGAGAATTCCTAAATTATTATATATAGGATATTGGCGCCAAAGCTTAAACGAAGAAAGCGAAACCAACCATATGCGCACTGTTATTAAAGCAATCCTATACATTCGTGGGTAACTGCACTGTTACAGgtgcgca
ctgtgaaggggtctcgactttggcgaggtgttttttttttaaattttaagtgcttttattttcatcgtaactttgtccagAGAATCGCCAGAGGCAGAAGCCCAGAACGGGCAAAATCGCGAAAAAATCAGTTGCGCGTGAGAAATCTTGCCAGAGTCGAACCTGTCCCGTCCAATGTAAGTATTATTTTTCCCAATTTA
TTTTCCATTCTACTTTGGGGTTTTGTAGAAAACATGGCTATTCATTTTCTGCTGTGAATTCCATAAATTTAGGGTTCACATGAAACGATCAGAGTTGGCAGCTAATGTAATGGGTTTTTCTTTCACTTCTCGATTTTATCGAGTTCTTTCCTGTAAAACTAGCCTTCATTTGTTCGACCGTTGCAATGGGATCCGGATAT
TCTTATCAGGTTGAGTGGCTCTACCTTAGCGGGGTTCTTTTTTCGCTAACAGAATTGCGGCTCTCAGTGCAGATTGCGACTCCTGAACTGCTGTACTGCTGTGGTGGCTACTCACTTCTTTCTGCCCGTTCACATCCGGTCTGTTGGGGCATATTAGGTATTTGGGTTAGAAACTTACACTCAAGTTCTTCTATCATGGA
GGAGGATAAGAGGGAGAATGTTGAAGCTAAACGTAGAGAGTTTACAGATGATGAAATGAATGAAAAAGGGGCACAACCAGAACCATCTACAAGTTCGGTTTTTGATTTAGCATTTGAGCAATCTTCAAGGCAACCATTCACTGCCCTTAGTCAAGAAGATTCAGACTTGGCCCTCGCACGAGCTTTGCAAGAACAGGAAA
GGGCATATATGCTGCTTCGAAGGAATGCAGAATCTAGTGACTACGAGACTTCTGGGAGTGGCAATTATGATCATGAATATTATATAGATGATAGCGGTGAGAATGAAGATGAGGTTGATGCTAATGCTGATGAATTCCAAAGGGAAGCATTGGCTGATGGTCACCATGAAGAGGTTGATGCCTCTTTATTTGAAAGTGAT
GAAGCATATGCGAGGGCACTTCAGGAAGCCGAGGACCGTCTACTGACAGCTCAAATGATGGCTTTGGCTGGCATTAATGACCGGGAGGAGGATGACAATGAAGACAATGATAGCACTTCACGGGATGCATGGCAAGATGTAGATCCTGACAATATGTTGTATGAGGAACTGGTTGCTTTGAGTGAAGTTGTTGGGACCCA
GAGTAGAGGTCTTGCTCCAGATTTGATCACCTCTTTGCCTTTGTCTAAATATGTGCCAGAAAGTCCAAGTGCAAGCAACTCTGAGAAGTGTGTCATCTGTCATCTGGAATACGAGGGAGGGGACTTAATACTGACTCTTCCATGCAAGCATCAATACCATTCAGATTGCATAAAAAGTTGGCTTCAAATAAATAAGGTAT
GCCCAGTTTGTAATGTGGAGGTCTCTGATAGAACAAATCATTGACATGGATAGCTACCTAGTTTAGCTATTAACTTTCAGTATATAAGCTTGGCTATATTTCTGGAGCAACTTGTAATTTAGTTGGTAAAAAACTTCATTTTTATTGGGATGTTAAGACAGGCCCTTCTGCATTGAATATCAAGAACTGAAACCATTATA
TGCTCGTAATACAGAGCTGGAATCGATGGTTTATCAAACCATAAAGCAAACAAGCATAGAAAACAAGATGCCAATTATTGGAACTGGGATAATTTTCCATTTTAAACTTATTTGATTCCTTTTAGATGCACTCCATAATTATCTCATCCGATAGTTGCTGTCAAGCCAACTAATCTTTGTAGTGGTATGAGAGAGATTAC
TTGAGATAGAACCATGCTTTTTACTTTGTTATTTCTTGGACTATGTTATTGTTTTCCAAAAAAAGAAGAAATCCAACAACGCCTGTGATAAAAAATAGTGTGAAGCATGACAGAACAGAAAGATTTCCTTGCTGTCCATCACAATTCATTGTACAAATAGCAATGAATTGTTAATTGTGGTATAAGAGGGAAATTACCTG
AAATTGACTGCCTTTTTCATTGTTATTTCTTGGACTTGGTTACTGTTTTTTAAAGAAAGAAGAAAAATGCAAACACCAGTGATTAAAATAGTGCAAATCATGATGGGAAAAATTAGATCACCTTGCTTCCCATTAAATTTAGTTGTACAGATTCCAATGAATAGTCCATGTAAAGGTTTAGGAACACCAGAAAATCAGTT
GGAAGGAAATTTTTGTGTGTAATTTGTTTCCTGCTTTCTTTAGTTAGAGATGTTTTTTGTCTCTAGATATCTGTCATTTAATAGGTGGTGTCCTAGGCATGCAGGATGGCAATGGAAACCACCAGGATAGTGAATTCAATAATGTTCCTGTCACTTCTTTTTGCCGTATTGTGGTTAGAGCCCCCAGCCGATTATAAGTT
GCTGGTAAATTGAAATTGGGATATTTTTCCATTTGATGCCGTTTATACATGCTCCATAATTATATGAACCAAGTGTCTATCAAAGTAACTAATCTTCATGCTGCTATGAGAAATTTCTTGAAATTGAAACATACTTTGTTCTTTGTTATTTCTTGGACTTGGTTATTGTTTTTGGAAGAAAAAATTGCAAACACTAGTGA
TAAAAATAGTGTAAATTGTGTCCAAAAAACTAGATTTGTTTGCGGTCCATCAAACATGGTTGTGATAGTACTGAGTGTAATTCTATTTTACACTAAAAACAGTTGGAAGAAATCTTTTGCGTGGAATTGATCTAGAAATGTTTTGAAGGTTTTGCAAATTGAAAGTTGGTAACCATGTTTTTTTTTCTTTCTAAATTGCT
GTCATTTGATAGGTAGCGTCTTACATATGCAAGATG
Intron 6 GTTGAGTGGC ... CGGCTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.4 | 353.3 | 45 | 55 |
| A2 | 9.56 | 340.7 | 39 | 33 |
| A3 | 10.64 | 336 | 39 | 41 |
| A4 | 15.1 | 295.3 | 46 | 59 |
| A5 | 11.05 | 181.3 | 26 | 19 |
| A6 | 14.36 | 399.7 | 56 | 78 |
| A7 | 10.57 | 884.7 | 100 | 109 |
| A8 | 11.64 | 493.7 | 49 | 81 |
| A9 | 12.86 | 864 | 98 | 157 |
| A10 | 10.91 | 842 | 104 | 102 |
>TRINITY_DN40935_c0_g1_i5 from sample A9 / Example spliced isoformCAAGATTCCGTGCAACCTTTCTCCGTTAATTGAGAATTCTTAAATATGCAGGGCTCCTCCAAGATTCCGTGCAACCTCTCTCCGTTAATTGAGAATTCCTAAATTATTATATATAGGATATTGGCGCCAAAGCTTAAACGAAGAAAGCGAAACCAACCATATGCGCACTGTTATTAAAGCAATCCTATACATTCGTGGGT
AACTGCACTGTTACAGAGAATCGCCAGAGGCAGAAGCCCAGAACGGGCAAAATCGCGAAAAAATCAGTTGCGCGTGAGAAATCTTGCCAGAGTCGAACCTGTCCCGTCCAATTGCAGATTGCGACTCCTGAACTGCTGTACTGCTGTGGTGGCTACTCACTTCTTTCTGCCCGTTCACATCCGGTCTGTTGGGGCATATT
AGGTATTTGGGTTAGAAACTTACACTCAAGTTCTTCTATCATGGAGGAGGATAAGAGGGAGAATGTTGAAGCTAAACGTAGAGAGTTTACAGATGATGAAATGAATGAAAAAGGGGCACAACCAGAACCATCTACAAGTTCGGTTTTTGATTTAGCATTTGAGCAATCTTCAAGGCAACCATTCACTGCCCTTAGTCAAG
AAGATTCAGACTTGGCCCTCGCACGAGCTTTGCAAGAACAGGAAAGGGCATATATGCTGCTTCGAAGGAATGCAGAATCTAGTGACTACGAGACTTCTGGGAGTGGCAATTATGATCATGAATATTATATAGATGATAGCGGTGAGAATGAAGATGAGGTTGATGCTAATGCTGATGAATTCCAAAGGGAAGCATTGGCT
GATGGTCACCATGAAGAGGTTGATGCCTCTTTATTTGAAAGTGATGAAGCATATGCGAGGGCACTTCAGGAAGCCGAGGACCGTCTACTGACAGCTCAAATGATGGCTTTGGCTGGCATTAATGACCGGGAGGAGGATGACAATGAAGACAATGATAGCACTTCACGGGATGCATGGCAAGATGTAGATCCTGACAATAT
GTTGTATGAGGAACTGGTTGCTTTGAGTGAAGTTGTTGGGACCCAGAGTAGAGGTCTTGCTCCAGATTTGATCACCTCTTTGCCTTTGTCTAAATATGTGCCAGAAAGTCCAAGTGCAAGCAACTCTGAGAAGTGTGTCATCTGTCATCTGGAATACGAGGGAGGGGACTTAATACTGACTCTTCCATGCAAGCATCAAT
ACCATTCAGATTGCATAAAAAGTTGGCTTCAAATAAATAAGGTATGCCCAGTTTGTAATGTGGAGGTCTCTGATAGAACAAATCATTGACATGGATAGCTACCTAGTTTAGCTATTAACTTTCAGTATATAAGCTTGGCTATATTTCTGGAGCAACTTGTAATTTAGTTGGTAAAAAACTTCATTTTTATTGGGATGTTA
AGACAGGCCCTTCTGCATTGAATATCAAGAACTGAAACCATTATATGCTCGTAATACAGAGCTGGAATCGATGGTTTATCAAACCATAAAGCAAACAAGCATAGAAAACAAGATGCCAATTATTGGAACTGGGATAATTTTCCATTTTAAACTTATTTGATTCCTTTTAGATGCACTCCATAATTATCTCATCCGATAGT
TGCTGTCAAGCCAACTAATCTTTGTAGTGGTATGAGAGAGATTACTTGAGATAGAACCATGCTTTTTACTTTGTTATTTCTTGGACTATGTTATTGTTTTCCAAAAAAAGAAGAAATCCAACAACGCCTGTGATAAAAAATAGTGTGAAGCATGACAGAACAGAAAGATTTCCTTGCTGTCCATCACAATTCATTGTACA
AATAGCAATGAATTGTTAATTGTGGTATAAGAGGGAAATTACCTGAAATTGACTGCCTTTTTCATTGTTATTTCTTGGACTTGGTTACTGTTTTTTAAAGAAAGAAGAAAAATGCAAACACCAGTGATTAAAATAGTGCAAATCATGACGGGAAAAATTAGATCGCCTTGCTTCCCATTAAATTTAGTTGTACAGATTCC
AATGAATAGTCCATGTAAAGGTATAGGAACACCAGAAAATCAGTTGGAAGAAAATTTTTGCGTGTAATTTGTTTCCTGCTTTCTTTAGTTAGAGATGTTTTTTGTCTCTAGATATCTGTCATTTAATAGGTGGTGTCCTAGGCATGCAGGATGGCAATGGAAACCACCA
>TRINITY_DN40935_c0_g1_i2 from sample A9 / Example unspliced isoform:CAAGATTCCGTGCAACCTTTCTCCGTTAATTGAGAATTCTTAAATATGCAGGGCTCCTCCAAGATTCCGTGCAACCTCTCTCCGTTAATTGAGAATTCCTAAATTATTATATATAGGATATTGGCGCCAAAGCTTAAACGAAGAAAGCGAAACCAACCATATGCGCACTGTTATTAAAGCAATCCTATACATTCGTGGGT
AACTGCACTGTTACAGGTGCGCACTGTGAAGGGGTCTCGACTTTGGCGAGGTGTTTTTTTTTTAAATTTTAAGTGCTTTTATTTTCATCGTAACTTTGTCCAGAGAATCGCCAGAGGCAGAAGCCCAGAACGGGCAAAATCGCGAAAAAATCAGTTGCGCGTGAGAAATCTTGCCAGAGTCGAACCTGTCCCGTCCAATg
ttgagtggctctaccttagcggggttcttttttcgctaacagaattgcggctctcagTGCAGATTGCGACTCCTGAACTGCTGTACTGCTGTGGTGGCTACTCACTTCTTTCTGCCCGTTCACATCCGGTCTGTTGGGGCATATTAGGTATTTGGGTTAGAAACTTACACTCAAGTTCTTCTATCATGGAGGAGGATAAG
AGGGAGAATGTTGAAGCTAAACGTAGAGAGTTTACAGATGATGAAATGAATGAAAAAGGGGCACAACCAGAACCATCTACAAGTTCGGTTTTTGATTTAGCATTTGAGCAATCTTCAAGGCAACCATTCACTGCCCTTAGTCAAGAAGATTCAGACTTGGCCCTCGCACGAGCTTTGCAAGAACAGGAAAGGGCATATAT
GCTGCTTCGAAGGAATGCAGAATCTAGTGACTACGAGACTTCTGGGAGTGGCAATTATGATCATGAATATTATATAGATGATAGCGGTGAGAATGAAGATGAGGTTGATGCTAATGCTGATGAATTCCAAAGGGAAGCATTGGCTGATGGTCACCATGAAGAGGTTGATGCCTCTTTATTTGAAAGTGATGAAGCATATG
CGAGGGCACTTCAGGAAGCCGAGGACCGTCTACTGACAGCTCAAATGATGGCTTTGGCTGGCATTAATGACCGGGAGGAGGATGACAATGAAGACAATGATAGCACTTCACGGGATGCATGGCAAGATGTAGATCCTGACAATATGTTGTATGAGGAACTGGTTGCTTTGAGTGAAGTTGTTGGGACCCAGAGTAGAGGT
CTTGCTCCAGATTTGATCACCTCTTTGCCTTTGTCTAAATATGTGCCAGAAAGTCCAAGTGCAAGCAACTCTGAGAAGTGTGTCATCTGTCATCTGGAATACGAGGGAGGGGACTTAATACTGACTCTTCCATGCAAGCATCAATACCATTCAGATTGCATAAAAAGTTGGCTTCAAATAAATAAGGTATGCCCAGTTTG
TAATGTGGAGGTCTCTGATAGAACAAATCATTGACATGGATAGCTACCTAGTTTAGCTATTAACTTTCAGTATATAAGCTTGGCTATATTTCTGGAGCAACTTGTAATTTAGTTGGTAAAAAACTTCATTTTTATTGGGATGTTAAGACAGGCCCTTCTGCATTGAATATCAAGAACTGAAACCATTATATGCTCGTAAT
ACAGAGCTGGAATCGATGGTTTATCAAACCATAAAGCAAACAAGCATAGAAAACAAGATGCCAATTATTGGAACTGGGATAATTTTCCATTTTAAACTTATTTGATTCCTTTTAGATGCACTCCATAATTATCTCATCCGATAGTTGCTGTCAAGCCAACTAATCTTTGTAGTGGTATGAGAGAGATTACTTGAGATAGA
ACCATGCTTTTTACTTTGTTATTTCTTGGACTATGTTATTGTTTTCCAAAAAAAGAAGAAATCCAACAACGCCTGTGATAAAAAATAGTGTGAAGCATGACAGAACAGAAAGATTTCCTTGCTGTCCATCACAATTCATTGTACAAATAGCAATGAATTGTTAATTGTGGTATAAGAGGGAAATTACCTGAAATTGACTG
CCTTTTTCATTGTTATTTCTTGGACTTGGTTACTGTTTTTTAAAGAAAGAAGAAAAATGCAAACACCAGTGATTAAAATAGTGCAAATCATGACGGGAAAAATTAGATCGCCTTGCTTCCCATTAAATTTAGTTGTACAGATTCCAATGAATAGTCCATGTAAAGGTATAGGAACACCAGAAAATCAGTTGGAAGAAAAT
TTTTGCGTGTAATTTGTTTCCTGCTTTCTTTAGTTAGAGATGTTTTTTGTCTCTAGATATCTGTCATTTAATAGGTGGTGTCCTAGGCATGCAGGATGGCAATGGAAACCACCA