NA ----> NA

Intron 1 GTTGCCATTG ... TTACGGGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	0	1	0	0
A2	33.33	2	0	2
A3	-1	0	0	0
A4	20	2	1	0
A5	-1	0	0	0
A6	20	16	3	5
A7	28.21	14	7	4
A8	26.92	19	8	6
A9	24	19	3	9
A10	31.82	15	5	9

>TRINITY_DN36836_c0_g1_i4 from sample A8 / Example spliced isoform

CTTGTTCTGTGCAACTCGCCTCTCTGTCCACCCGTCCTTCCATTTCCTCCACTCATAATATTGCTTCCAAAGGACCATCTACGCATTTTCGTTGTTTATACACAGGTCTATACGTGCACAACGTATTCACAAATGACACCAGAAAGTTCACCTCGATCGGAAATCGAACAGAAATTTGCCATCCAAGGAGACAATTTGGC
AGAAAAGATAGGCAGATGTCACCAAAGGCTTTTCTTGTTGGTGGAATTCTAGGCGTGGATCCATGGTCACCCAATATTGATTCCCAAAGCATAGCTCCACAGTTGTTTGCAGCTTCACTGTTTCCTTACTTGGGATTTCTGTATTATATAACCAAGTCCAGAACGGCTCCCAAGCTCACTCTCTTCGGTTTCTACTTCTT
GCTTGCGTTTGTAGGCGCTACAGTTCCTGCAGGCATTTATGCAAAAATACAGTATGGGACCTCATTAGCAAATGTGGATTGGCTTCATGGAAGTGCAGAGTCACTATTAACTCTCACCAATTTATTTATTGTTTTGGGTTTGAGAAAAAGTTTACGCGAAGAGGAAAGAAGGAAGATATCAAATGTGGATGATGAAAAGG
GCTTGGAGGTCGAGGAGAAGCAGAGAACTTCTCTCTAAATGAAGCAATCAGCATGCTTACATCTTTTTTATCGACACTTTATTTGCTTTCTATTTTTGTATAAATCTTATCCCAAGAATATTTTTAGCACTTTTTATCTCTTTTTTTTCAAAATATTCGTAACATATATGCTTAAAAATAAAAACAAATTTACTTTTGTT
TTAGAGAAATTGAGAAAGTGTCCAGTTTCATTTAATCCCAAGATATGTTTCAACTTAACAATTTGGTTGCGATCACTGTCCTATTATCCAAGAGTGTTTTTAGCACTTTCATCTCTCA

>TRINITY_DN36836_c0_g1_i5 from sample A8 / Example unspliced isoform:

CTTGTTCTGTGCAACTCGCCTCTCTGTCCACCCGTCCTTCCATTTCCTCCACTCATAATATTGCTTCCAAAGGACCATCTACGCATTTTCGTTGTTTATACACAGGTCTATACGTGCACAACGTATTCACAAATGACACCAGAAAGTTCACCTCGATCGGAAATCGAACAGAAATTTGCCATCCAAGGAGACAATTTGGC
AGAAAAGATAGGCAGATGTCACCAAAGGCTTTTCTTGTTGGTGGAATTCTAGGCGTGGATCCATGGTCACCCAATATTGATTCCCAAAGCATAGCTCCACAGTTGTTTGCAGCTTCACTGTTTCCTTACTTGGGATTTCTGTATTATATAACCAAGTCCAGAACGGCTCCCAAGCTCACTCTCTTCGGTTTCTACTTCTT
GCTTGCGTTTGTAGGCGCTACAGgttgccattgtttaaacaccttacgggcagTTCCTGCAGGCATTTATGCAAAAATACAGTATGGGACCTCATTAGCAAATGTGGATTGGCTTCATGGAAGTGCAGAGTCACTATTAACTCTCACCAATTTATTTATTGTTTTGGGTTTGAGAAAAAGTTTACGCGAAGAGGAAAGAA
GGAAGATATCAAATGTGGATGATGAAAAGGGCTTGGAGGTCGAGGAGAAGCAGAGAACTTCTCTCTAAATGAAGCAATCAGCATGCTTACATCTTTTTTATCGACACTTTATTTGCTTTCTATTTTTGTATAAATCTTATCCCAAGAATATTTTTAGCACTTTTTATCTCTTTTTTTTCAAAATATTCGTAACATATATG
CTTAAAAATAAAAACAAATTTACTTTTGTTTTAGAGAAATTGAGAAAGTGTCCAGTTTCATTTAATCCCAAGATATGTTTCAACTTAACAATTTGGTTGCGATCACTGTCCTATTATCCAAGAGTGTTTTTAGCACTTTCATCTCTCA

Intron 2 GTGAGTTCTA ... GCAGAGAAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	60.85	1.7	2	3
A2	33.33	2	0	2
A3	100	0	2	2
A4	60	1	1	0
A5	-1	0	0	0
A6	31.39	14	5	7
A7	15.55	6	1	1
A8	35.02	10.8	4	7
A9	32.96	18.2	6	11
A10	30.66	13.7	2	10

>TRINITY_DN32613_c0_g1_i4 from sample A6 / Example spliced isoform

TCTCCACGCACGTATTAGTGTTTTCTGTGACAATGGCTTGTTCTGTGCAACTCGCCTCTCTGTCCACCCGTCCTTCCATTTCCTCCACTCATAATATTGCTTCCAAAGGACCATCTACGCATTTTCGTTGTTTATACACAGGTCTATACGTGCACAACGTATTCACAAATGACACCAGAAAGTTCACCTCGATCGGAAAT
CGAACAGAAATTTGCCATCCAAGGAGACAATTTGGCAGAAAAGATAGGCAGATGTCACCAAAGGCTTTTCTTGTTGGTGGAATTCTAGGCGTGGATCCATGGTCACCCAATATTGATTCCCAAAGCATAGCTCCACAGTTGTTTGCAGCTTCACTGTTTCCTTACTTGGGATTTCTGTATTATATAACCAAGTCCAGAAC
GGCTCCCAAGCTCACTCTCTTCGGTTTCTACTTCTTGCTTGCGTTTGTAGGCGCTACAGTTCCTGCAGGCATTTATGCAAAAATACAGTATGGGACCTCATTAGCAAATGTGGATTGGCTTCATGGAAGTGCAGAGTCACTATTAACTCTCACCAATTTATTTATTGTTTTGGGTTTGAGAAAAAGTTTACGCGAAGAGG
AAAGAAGGAAGATATCAAATGTGGATGATGAAAAGGGCTTGGAGGTCGAGGAGAAGCAGAGAACTTCTCTCTAAATGAAGCAATCAGCATGCTTACATCTTTTTTATCGACACTTTATTTGCTTTCTATTTTTGTATAAATCTTATCCCAAGAATATTTTTAGCACTTTTTATCTCTTTTTTTTCAAAATATTCGTAACA
TATATGCTTAAAAATAAAAACAAATTTACTTTTGTTTTAGAGAAATTGAGAAAGTGTCCAGTTTCATTTAATCCCAAGATATGTTTCAACTTAAAAAAATTTAAA

>TRINITY_DN32613_c0_g1_i2 from sample A6 / Example unspliced isoform:

TCTCCACGCACGTATTAGTGTTTTCTGTGACAATGGCTTGTTCTGTGCAACTCGCCTCTCTGTCCACCCGTCCTTCCATTTCCTCCACTCATAATATTGCTTCCAAAGGACCATCTACGCATTTTCGTTGTTTATACACAGGTCTATACGTGCACAACGTATTCACAAATGACACCAGAAAGTTCACCTCGATCGGAAAT
CGAACAGAAATTTGCCATCCAAGGAGACAATTTGGCAGAAAAGATAGGCAGATGTCACCAAAGGCTTTTCTTGTTGGTGGAATTCTAGGCGTGGATCCATGGTCACCCAATATTGATTCCCAAAGCATAGCTCCACAGTTGTTTGCAGCTTCACTGTTTCCTTACTTGGGATTTCTGTATTATATAACCAAGTCCAGAAC
GGCTCCCAAGCTCACTCTCTTCGGTTTCTACTTCTTGCTTGCGTTTGTAGGCGCTACAGTTCCTGCAGGCATTTATGgtgagttctaatgcttcaaagtttctctcattatatcaaacattgcagagaaagCAAAAATACAGTATGGGACCTCATTAGCAAATGTGGATTGGCTTCATGGAAGTGCAGAGTCACTATTAA
CTCTCACCAATTTATTTATTGTTTTGGGTTTGAGAAAAAGTTTACGCGAAGAGGAAAGAAGGAAGATATCAAATGTGGATGATGAAAAGGGCTTGGAGGTCGAGGAGAAGCAGAGAACTTCTCTCTAAATGAAGCAATCAGCATGCTTACATCTTTTTTATCGACACTTTATTTGCTTTCTATTTTTGTATAAATCTTAT
CCCAAGAATATTTTTAGCACTTTTTATCTCTTTTTTTTCAAAATATTCGTAACATATATGCTTAAAAATAAAAACAAATTTACTTTTGTTTTAGAGAAATTGAGAAAGTGTCCAGTTTCATTTAATCCCAAGATATGTTTCAACTTAAAAAAATTTAAA