sp|Q8VYK9|CKL12_ARATH ----> Casein kinase 1-like protein 12
Intron 1 GTTGGTCAGT ... ATTTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.48 | 93 | 31 | 36 |
| A2 | 22.73 | 102 | 18 | 42 |
| A3 | 22.76 | 112 | 41 | 25 |
| A4 | 25.65 | 71 | 17 | 32 |
| A5 | 14.85 | 43 | 9 | 6 |
| A6 | 18.03 | 225 | 66 | 33 |
| A7 | 18.15 | 327 | 82 | 63 |
| A8 | 17.09 | 313 | 74 | 55 |
| A9 | 19.28 | 247 | 61 | 57 |
| A10 | 19.37 | 254 | 63 | 59 |
>TRINITY_DN131811_c2_g1_i13 from sample A1 / Example spliced isoformTTAGGTTTTGCCCCGTTTTTTCTTTTTTCATTTGATGACTAATTATTTCGTTGGCTCTATAAAATCTGAATTTGTTGAGCGCTGTGGACTTTTAAGAGAATTATAGGGTATTATATGGAAAACATGGGGAATTTAGCTGATTTTTGGGGTGAATTTCAGGCACCAATGACCAGACGAACGAGGAAGTCGCCATTAAACTG
GAAAATGCGAAGACTAAGCACCCACAGCTTTTATATGAATCTATGCTTTATAGGGTCCTACAAGCAGGAACGGGAATTGCAAATATAAGATGGTTTGGTGTTGAAGGAGACTATAATGTCCTTGTGATGGACTTATTAGGGCCTAGCCTTGAGGATCTTTTTAACTTTTGTGGTAGGAAGTTGTCCCTGAAGACTGTTCT
CATGCTTGCAGATCAGATGTTGAATAGGGTTGAGTATATTCATTCAAAAAACTTTCTTCACAGGGATATCAAACCCGACAATTTTCTCATGGGCCTTGGGAAGAGAGCAAATCAGGTGTATATCATTGATTTTGGACTTGCAAAGAAGTATCGAGAGCCAGTGAGTCACAAGCACATCCCTTACAGAGAAAACAAAAACC
TAACTGGAACTGCACGATATGCAAGCATGAATACTCACCTTGGCATTGAGCAAAGCCGAAGAGATGATTTAGAATCTCTTGGATATGTGCTTCTGTATTTTTTGAGAGGCAGTCTTCCATGGCAGGGTTTGAAAGCTGGTACAAAAAAGCAGAAGTATGATAAGATTAGTGAAAAGAAGGTTGCAACCCCCACTGAGGTA
AGAAATTTTATTCAGTGCTAACTCTTCTGATACTACAGATGGATTTATATTTCAGATTATCATATGCACATTTTTCAGGTCTTGTGCAAGTCCTACCCATCAGAGTTTACAAAATATTTTCATTATTGCCGCCAATTACGCTTTGATGATAAACCGGATTATGCTTACTTGAGGAGGATATTTCGTGATCTTTTTATTCA
TGAAGGATTTCAGTTTGACTATGTTTTTGACTGGACCATTTTGAAATATCAACAACAAACACAAATTTCTCATCCACCTCAAAA
>TRINITY_DN131811_c2_g1_i4 from sample A1 / Example unspliced isoform:AGAAAACAAAAACCTAACTGGAACTGCACGATATGCAAGCATGAATACTCACCTTGGCATTGAGCAAAGCCGAAGAGATGATTTAGAATCTCTTGGATATGTGCTTCTGTATTTTTTGAGAGGCAGgttggtcagtttttctttcttgtacttgactaagatatggcattatttattgtgaatatgattttggatttaac
aatatggggtcatttttccagTCTTCCATGGCAGGGTTTGAAAGCTGGTACAAAAAAGCAGAAGTATGATAAGATTAGTGAAAAGAAGGTTGCAACCCCCACTGAGGTCCTGTGCAAGTCCTACCCATCAGAGTTTACAAAATATTTTCATTATTGCCGCCAATTACGCTTTGATGATAAACCGGATTATGCTTACTTGA
GGAGGATATTTCGTGATCTTTTTATTCATGAAGGATTTCAGTTTGACTATGTTTTTGACTGGACCATTTTGAAATATCAACAACAAACACAAATTTCTCATCCACCTCAAAA
Intron 2 GTGCAACTTT ... AGGCATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.37 | 152.8 | 142.5 | 177.5 |
| A2 | 54.02 | 89.4 | 105 | 102.7 |
| A3 | 50.9 | 95 | 91.8 | 104.5 |
| A4 | 52.74 | 68.6 | 73.8 | 77.9 |
| A5 | 51.4 | 37.1 | 33.8 | 43.8 |
| A6 | 51.17 | 322.4 | 321.6 | 346.6 |
| A7 | 51.98 | 353.6 | 356.1 | 400.6 |
| A8 | 51.68 | 529.8 | 543.4 | 580.4 |
| A9 | 50.97 | 394.1 | 398.4 | 412.4 |
| A10 | 49.39 | 307 | 270.7 | 326.3 |
>TRINITY_DN113816_c1_g2_i9 from sample A3 / Example spliced isoformTCAAACCCGACAATTTTCTCATGGGCCTTGGGAAGAGAGCAAATCAGGTGTATATCATTGATTTTGGACTTGCAAAGAAGTATCGAGAGCCAGTGAGTCACAAGCACATCCCTTACAGAGAAAACAAAAACCTAACTGGAACTGCACGATATGCAAGCATGAATACTCACCTTGGCATTGAGCAAAGCCGAAGAGATGAT
TTAGAATCTCTTGGATATGTGCTTCTGTATTTTTTGAGAGGCAGTCTTCCTTGGCAGGGTTTGAAAGCTGGTACAAAAAAGCAGAAGTATGATAAGATCAGTGAAAAGAAGGTTGCAACCCCCACTGAGGTCCTGTGCAAGTCCTACCCATCAGAGTTTACAAAATATTTTCATTATTGCCGCCAATTACGCTTTGATGA
TAAACCGGATTATGCTTACTTGAGGAGGATATTTCGTGATCTTTTTATTCATGAAGGATTTCAGTTTGACTATGTTTTTGACTGGACTATTTTGAAATATCAACAACAAACACAAATTTCTCATCCACCTCAAAACTCTCTTGGTGCTGTTGGAGGAACGAGCACAGGACCTACGGCAGCCACTGGGCCCACAGCAGCCA
CTGGACCGACCGCAAAAACAGGTCATCTAGGGGGTAAGGACAATGATGGCAACAAGTTTGCTGTTGATGTTGCTCGCAAAAGAATGCCAGTAGCTGTTGTGAATTCTGGTAGTTTAGCTAAGCTGAAGAGTCCTGTAGCCCATGAATCTGGGACTTCAAAAGATGTGGTAAGAAGAGTCAGATTTTGAGCATGTTCGGTT
GAGATCATTTTGCCCTTTACAATTATAATTCTTGGTTGTGTTCTGGTCATATCAATCAGGCTTTGAGCATGTTCTGAAACTGAACTCTGATGCAGAAATGATGAAAATTCATATCCATAGGTATTTTATTGTCTTCACTTTGATGGTCTGATTGATGAAAGTTGATTGTTCTCACAAGCTGGGGGCCACCATGTTAATAT
GGAAGATGCCTTTACCATTTATAAAGATATTCAGTACCCTCGGAAACTAATTTACAGTGTGTAGAAAGTGCATATATGTCTTGTTATATTGTTGGGGTTTCTGTTCAGTGAGTCCTGTTTAAAGACTCGATGGTTTTGGATTTCTGTCTGAAGCAGCCCTTGTCAGATCTTATTACAAAAAAGTTTATTTTTCTAATGAG
CATTGAATAAAATGATAAAATCAATGGATTTGAGATCAGGTAAAAGTTGGAGACATGGTATTGTGGTCTTCTAGATCAGTTTTTTTTTGGTTTTAAATGTTTTCAGTATATGCATTTGTAAGGACGGTCTATAGCAGGTTCAAGATGTCTGTTCTTCAAAACTAACTGGCAGATATTTTGGTACCATGCATTGTAGTGAT
ACATGTAAATTTTGGTTAGTTGCTTTTCCAGTGTGATCTGTTTTGTTTCAGCAACCTATAAGATCTGTTGTGACAAGTCCCTGGGAAAAAATGCACAATATTTTAAGTTTGCGGGAGGGTATTTGAGGTGATAATTACAAATTATTAGAATATGCTTGCGTAATTTTATGGCCCATTCTAATCATTTCTTTAAATAGAAA
ATATACCCAAGAATCACTGGGTATCGAGTAACTGTATATTTGTGACTTGAGGTAAATAAATTTCATTCTTTCCCAGGTTAGGTCTGGGTGCAAATTCTCACGTTTGCAATGCTGAGTCATGTCAAAGCATGTATTGGCCACAGTAAGATGGATTGCTCTAAAAGGAGACTATGCCATGTTGCTTTTGGGAATTTGCTATT
AGCTTGCAGCACGCTGGGAACAAGTTAGGGCGATGC
>TRINITY_DN113816_c1_g2_i2 from sample A3 / Example unspliced isoform:CGTGATCTTTTTATTCATGAAGGTATGTATTATATATGTAGTAATTCCCTTTATATTTAAGGATTTGCCATGGTCTACGGTGATAACAATTTATAACATCTATAAGTTTGATGGTGTAGAACTTAAAACAGCTGGTTGACTGGTGGACAGATATATCAATCAATTTACATTGTCTCAAATTCTCAATCTGTACAGGATTT
CAGTTTGACTATGTTTTTGACTGGACTATTTTGAAATATCAACAACAAACACAAATTTCTCATCCACCTCAAAAGTCTCTTGGTGCTGTTGGAGGAACGAGCACAGGACCTACGGCAGCCACTGGGCCCACAGCAGCCACTGGACCGACCGCAAAAACAGgtgcaactttcgataggcattcagGTCATCTAGGGGGTAA
GGACAATGATGGCAACAAGTTTGCTGTTGATGTTGCTCGCAAAAGAATGCCAGTAGCTGTTGTGAATTCTGGTAGTTTAGCTAAGCTGAAGAGTCCTGTAGCCCATGAATCTGGGACTTCAAAAGATGTGGTAAGAAGAGTCAGATTTTGAGCATGTTCGGTTGAGATCATTTTGCCCTTTACAATTATAATTCTTGGTT
GTGTTCTGGTCATATCAATCAGGCTTTGAGCATGTTCTGAAACTGAACTCTGATGCAGAAATGATGAAAATTCATATCCATAGGTATTTTATTGTCTTCACTTTGATGGTCTGATTGATGAAAGTTGATTGTTCTCACAAGCTGGGGGCCACCATGTTAATATGGAAGATGCCTTTACCATTTATAAAGATATTCAGTAC
CCTCGGAAACTAATTTACAGTGTGTAGAAAGTGCATATATGTCTTGTTATATTGTTGGGGTTTCTGTTCAGTGAGTCCTGTTTAAAGACTCGATGGTTTTGGATTTCTGTCTGAAGCAGCCCTTGTCAGATCTTATTACAAAAAAGTTTATTTTTCTAATGAGCATTGAATAAAATGATAAAATCAATGGATTTGAGATC
AGGTAAAAGTTGGAGACATGGTATTGTGGTCTTCTAGATCAGTTTTTTTTTGGTTTTAAATGTTTTCAGTATATGCATTTGTAAGGACGGTCTATAGCAGGTTCAAGATGTCTGTTCTTCAAAACTAACTGGCAGATATTTTGGTACCATGCATTGTAGTGATACATGTAAATTTTGGTTAGTTGCTTTTCCAGTGTGAT
CTGTTTTGTTTCAGCAACCTATAAGATCTGTTGTGACAAGTCCCTGGGAAAAAATGCACAATATTTTAAGTTTGCGGGAGGGTATTTGAGGTGATAATTACAAATTATTAGAATATGCTTGCGTAATTTTATGGCCCATTCTAATCATTTCTTTAAATAGAAAATATACCCAAGAATCACTGGGTATCGAGTAACTGTAT
ATTTGTGACTTGAGGTAAATAAATTTCATTCTTTCCCAGGTTAGGTCTGGGTGCAAATTCTCACGTTTGCAATGCTGAGTCATGTCAAAGCATGTATTGGCCACAGTAAGATGGATTGCTCTAAAAGGAGACTATGCCATGTTGCTTTTGGGAATTTGCTATTAGCTTGCAGCACGCTGGGAACAAGTTAGGGCGATGC
Intron 3 GTATTATTGT ... TGTACTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24 | 177.5 | 44 | 68 |
| A2 | 24.65 | 101 | 36 | 30 |
| A3 | 24.04 | 104.5 | 31 | 35 |
| A4 | 25.81 | 77.8 | 28 | 26 |
| A5 | 26.81 | 43.8 | 15 | 17 |
| A6 | 22.88 | 346 | 88 | 117 |
| A7 | 22.08 | 400.8 | 94 | 133 |
| A8 | 20.52 | 579.5 | 131 | 168 |
| A9 | 20.78 | 412 | 89 | 127 |
| A10 | 24.5 | 325.8 | 75 | 136 |
>TRINITY_DN107721_c1_g3_i4 from sample A4 / Example spliced isoformATTTAACCCCACCCCAGTGAACGTGAGGCGGCCATCCGATAAATACCGCGGCCCGTCCCGTCCGAGGCAGCGGGTATTTTCGTGTACGACTCACGACTAGTTCGCCCATTCGTTGGTTCTCCACGGCCATCCTCCTCTCCACTTAAAAGTCAACAAAATGGGATGGTCGAAAGGAAAACAAATACGTGCAGTTTACGGAG
AGAGGGATTCGAACCCGTGACCTTGCCCTGACGCAATTCCCATGTCACAATCACACCTCCAGTCCACCACCGGCCGCTTCGGCCTCCCACTCAAGAATTCCCAGTAACTACTCCCCAATTTCTTTACCATTTCTGCGTCATTTCAGTTCTCCAGTCTCAATTCGCGAACCCTTTCCGTAATCCAAAGACCCGAGGCTTTA
ATATTTCCCCCTCTTCCCTCTTGCCCGCTTTTGAGGCCATCCTATATTATTTTATTCGGAGGTTTCTGTATTCGGCTTGGTGATTCTTTTTTCCATTTTTTTTTTGTACAGACAAGGGTTTGGGACAATTCGGCCACCGAGAGGTTTTTAACATTAGTTTTTGGTGATAAGAGTAAGCGCAGGGGATTCGATCCTGTGAC
ATGGAGTCACGCGTAGGCAGTAAGTACAGACTGGGGCGCAAAATTGGCAGCGGCTCCTTCGGCGAGATCTATTTAGGCACTAATGACCAGACGAACGAGGAAGTCGCCATTAAACTGGAAAATGCGAAGACTAAGCACCCACAGCTTTTATATGAATCTATGCTTTATAGGGTCCTACAAGCAGGAACGGGAATTGCAAA
TATAAGATGGTTTGGTGTTGAAGGAGACTATAATGTCCTTGTGATGGACTTATTAGGGCCTAGCCTTGAGGATCTTTTTAACTTTTGTGGTAGGAAGTTGTCCCTGAAGACTGTTCTCATGCTTGCAGATCAGATGTTGAATAGGGTTGAGTATATTCATTCAAAAAACTTTCTTCACAGGGATATCAAACCCGACAATT
TTCTCATGGGCCTTGGGAAGAGAGCAAATCAGGTGTATATCATTGATTTTGGACTTGCAAAGAAGTATCGAGAGCCAGTGAGTCACAAGCACATCCCTTACAGAGAAAACAAAAACCTAACTGGAACTGCACGATATGCAAGCATGAATACTCACCTTGGCATTGAGCAAAGCCGAAGAGATGATTTAGAATCTCTTGGA
TATGTGCTTCTGTATTTTTTGAGAGGCAGTCTTCCATGGCAGGGTTTGAAAGCTGGTACAAAAAAGCAGAAGTATGATAAGATCAGTGAAAAGAAGGTTGCAACCCCCACTGAGGTCCTGTGCAAGTCCTACCCATCAGAGTTTACAAAATATTTTCATTATTGCCGCCAATTACGCTTTGATGATAAACCGGATTATGC
TTACTTGAGGAGGATATTTCGTGATCTTTTTATTCATGAAGGATTTCAGTTTGACTATGTTTTTGACTGGACTATTTTGAAATATCAACAACAAACACAAATTTCTCATCCACCTCAAAACTCTCTTGGTGCTGTTGGAGGAACGAGCACAGGACCTACGGCAGCCACTGGGCCCACAGCAGCCACTGGACCGACCGCAA
AAACAGGTGCAACTTTCGATAGGCATTCAGGTCATCTAGGGGGTAAGGACAATGATGGCAACAAGTTTGCTGTTGATGTTGCTCGCAAAAGAATGCCAGTAGCTGTTGTGAATTCTGGTAGTTTAGCTAAGCTGAAGAGTCCTGTAGCCCATGAATCTGGGACTTCAAAAGATGTGGTAAGTTCAAATTGGTTGAAGCTT
ATATACCATTTGAGAAAATGCTGCTATGGTCCACCTGTGTAGGAATGAAGAAAGCCACCATTCTGCATTGATAATTCTGCTAGTTCATGAATTAATTCTGTTTTTAGTTTCTTGAAGTGCTAGTATGGCATTGAGCTCTCAAAGATCATCTATGTCCTGGCAAATCCGTTTCACTATTTGTTATACATTTCACCAGATAT
TAATTAGTCTGGTTCGAGTGTACATAAACGTTTTTTTCTAGATAATAAATATTTGTACAAATTGTGCCCTACTTTCCACATTGGGAAGCCAATTATTTAACGAGCATGCAATCTTAATTTGCATGCAGCTAGACCACAC
>TRINITY_DN107721_c1_g3_i9 from sample A4 / Example unspliced isoform:ATTTAACCCCACCCCAGTGAACGTGAGGCGGCCATCCGATAAATACCGCGGCCCGTCCCGTCCGAGGCAGCGGGTATTTTCGTGTACGACTCACGACTAGTTCGCCCATTCGTTGGTTCTCCACGGCCATCCTCCTCTCCACTTAAAAGTCAACAAAATGGGATGGTCGAAAGGAAAACAAATACGTGCAGTTTACGGAG
AGAGGGATTCGAACCCGTGACCTTGCCCTGACGCAATTCCCATGTCACAATCACACCTCCAGTCCACCACCGGCCGCTTCGGCCTCCCACTCAAGAATTCCCAGTAACTACTCCCCAATTTCTTTACCATTTCTGCGTCATTTCAGTTCTCCAGTCTCAATTCGCGAACCCTTTCCGTAATCCAAAGACCCGAGGCTTTA
ATATTTCCCCCTCTTCCCTCTTGCCCGCTTTTGAGGCCATCCTATATTATTTTATTCGGAGGTTTCTGTATTCGGCTTGGTGATTCTTTTTTCCATTTTTTTTTTGTACAGACAAGGGTTTGGGACAATTCGGCCACCGAGAGGTTTTTAACATTAGTTTTTGGTGATAAGAGTAAGCGCAGGGGATTCGATCCTGTGAC
ATGGAGTCACGCGTAGGCAGTAAGTACAGACTGGGGCGCAAAATTGGCAGCGGCTCCTTCGGCGAGATCTATTTAGGCACTAATGACCAGACGAACGAGGAAGTCGCCATTAAACTGGAAAATGCGAAGACTAAGCACCCACAGCTTTTATATGAATCTATGCTTTATAGGGTCCTACAAGCAGGAACGGGAATTGCAAA
TATAAGATGGTTTGGTGTTGAAGGAGACTATAATGTCCTTGTGATGGACTTATTAGGGCCTAGCCTTGAGGATCTTTTTAACTTTTGTGGTAGGAAGTTGTCCCTGAAGACTGTTCTCATGCTTGCAGATCAGATGTTGAATAGGGTTGAGTATATTCATTCAAAAAACTTTCTTCACAGGGATATCAAACCCGACAATT
TTCTCATGGGCCTTGGGAAGAGAGCAAATCAGGTGTATATCATTGATTTTGGACTTGCAAAGAAGTATCGAGAGCCAGTGAGTCACAAGCACATCCCTTACAGAGAAAACAAAAACCTAACTGGAACTGCACGATATGCAAGCATGAATACTCACCTTGGCATTGAGCAAAGCCGAAGAGATGATTTAGAATCTCTTGGA
TATGTGCTTCTGTATTTTTTGAGAGGCAGTCTTCCATGGCAGGGTTTGAAAGCTGGTACAAAAAAGCAGAAGTATGATAAGATCAGTGAAAAGAAGGTTGCAACCCCCACTGAGGTCCTGTGCAAGTCCTACCCATCAGAGTTTACAAAATATTTTCATTATTGCCGCCAATTACGCTTTGATGATAAACCGGATTATGC
TTACTTGAGGAGGATATTTCGTGATCTTTTTATTCATGAAGGATTTCAGTTTGACTATGTTTTTGACTGGACTATTTTGAAATATCAACAACAAACACAAATTTCTCATCCACCTCAAAAGTCTCTTGGTGCTGTTGGAGGAACGAGCACAGGACCCACGGCAGCCACTGGGCCCACAGCAGCCACTGGACCGACCGCAA
AAACAGGTGCAACTTTCGATAGGCATTCAGgtattattgtttaagaccagtctcaggtttggatgctccttgcttgtagagttaatgtctgaatttttatttctctgataaaggttaaactggtacactttgaggtccaaaatttctaggcaaggtcaatgaacaagattatttaagatttctaaaatagcacagtatat
tttatggacacattaaagacagattgttccagtcctgccacttctgtaggttttactgatataattttacttgagctccacattattcttttcaaggcagctatatctggtgaaaaagattgtgaagtgcatggtcatgttgttttgtcacagtagacaagcatgtatacatgcacataaatgtatatatgtatatattt
gtacgttagttgctttcatttcttgatataacattatttcttttgtctggcaatttgccctgtacttcagGTCATCTAGGGGGTAAGGACAATGATGGCAACAAGTTTGCTGTTGATGTTGCTCGCAAAAGAATGCCAGTAGCTGTTGTGAATTCTGGTAGTTTAGCTAAGCTGAAGAGTCCTGTAGCCCATGAATCTGG
GACTTCAAAAGATGTGGTAAG
Intron 4 GTATGTATTA ... ATCTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.79 | 136 | 27 | 0 |
| A2 | 21.61 | 105.2 | 29 | 1 |
| A3 | 11.12 | 105.2 | 13 | 4 |
| A4 | 14.13 | 69.2 | 11 | 5 |
| A5 | 30.8 | 48 | 21 | 2 |
| A6 | 14.97 | 309 | 54 | 0 |
| A7 | 12.4 | 434.6 | 61 | 0 |
| A8 | 17.03 | 466.2 | 95 | 2 |
| A9 | 11.18 | 384.8 | 48 | 0 |
| A10 | 11.84 | 271 | 36 | 0 |
>TRINITY_DN110134_c1_g1_i1 from sample A5 / Example spliced isoformCCCCACCCCAGTGAACGTGAGGCGGCCATCCGATAAATACCGCGGCCCGTCCCGTCCGAGGCAGCGGGTATTTTCGTGTACGACTCACGACTAGTTCGCCCATTCGTTGGTTCTCGACGGCCATCCTGCTCTCCACTTAAAAGTCAACAAAATGGGATGGTCGAAAGGAAAACAAATACGTGCAGTTTACGGAGAGAGGG
ATTCGAACCCGTGACCTTGCCCTGACGCAATTCCCATGTCACAATCACACCTCCAGTCCACCACCGGCCGCTTCGGCCTCCCACCCAAGAATTCCCAGTAACTACACCCCAATTTCTTTACCATTTCTGCGTCATTTCAGTTCTCCAGTCTCAATTCGCGAACCCTTTCCGTAATCCAAAGACCCGCGGCTTTAATATTT
CCTCCTCTTCCCTCTAGCCCGCTTTTGAGGCCATCCTATATTATTTTATCCGGAGGTTTCTGTATTCGGCTTGGTGATTCTTTTTTCCATTTTTTTTGTACAGACAAGGGTTTGGGACAATTCGGCCACCGAGAGGTTTTTAACATTAGTTTTTGGTGATAAGAGTAAGCGCAGGGGATTCGATCCTGTGACATGGAGTC
ACGCGTAGGCAGTAAGTACAGACTGGGGCGCAAAATTGGCAGCGGCTCCTTCGGCGAGATCTATTTAGGCACCAATGACCAGACGAACGAGGAAGTCGCCATTAAACTGGAAAATGCGAAGACTAAGCACCCACAGCTTTTATATGAATCTATGCTTTATAGGGTCCTACAAGCAGGAACGGGAATTGCAAATATAAGAT
GGTTTGGTGTTGAAGGAGACTATAATGTCCTTGTGATGGACTTATTAGGGCCTAGCCTTGAGGATCTTTTTAACTTTTGTGGTAGGAAGTTGTCCCTGAAGACTGTTCTCATGCTTGCAGATCAGATGTTGAATAGGGTTGAGTATATTCATTCAAAAAACTTTCTTCACAGGGATATCAAACCCGACAATTTTCTCATG
GGCCTTGGGAAGAGAGCAAATCAGGTGTATATCATTGATTTTGGACTTGCAAAGAAGTATCGAGAGCCAGTGAGTCACAAGCACATCCCTTACAGAGAAAACAAAAACCTAACTGGAACTGCACGATATGCAAGCATGAATACTCACCTTGGCATTGAGCAAAGCCGAAGAGATGATTTAGAATCTCTTGGATATGTGCT
TCTGTATTTTTTGAGAGGCAGTCTTCCATGGCAGGGTTTGAAAGCTGGTACAAAAAAGCAGAAGTATGATAAGATCAGTGAAAAGAAGGTTGCAACCCCCACTGAGGTCCTGTGCAAGTCCTACCCATCAGAGTTTACAAAATATTTTCATTATTGCCGCCAATTACGCTTTGATGATAAACCGGATTATGCTTACTTGA
GGAGGATATTTCGTGATCTTTTTATTCATGAAGGATTTCAGTTTGACTATGTTTTTGACTGGACCATTTTGAAATATCAACAACAAACACAAATTTCTCATCCACCTCAAAAGTCTCTTCATTCATCCGAGCTGCAAGATTCTATGGGATGATTGCTTGTCAGGGTGCTGTTGGAGGAACGAGCACAGGACCCACGGCAG
CCACTGGGCCCACAGCAGCCACTGGACCGACCGCAAAAACAGGTGCAACTTTCGATAGGCATTCAGGTATTATTGTTTAAGACCAGTCTCAGGTTTGGATGCTCCTTGCTTGTAGAGTTAATGTCTGAATTTTTATTTCTCTGATAAAGGTTAAACTGGTACACTTTGAGGTCCAAAATTTCTAGGCAAGGTCAATGAAC
AAGATTATTTAAGATTTCTAAAATAGCACAGTATATTTTATGGACACATGAAAGACAGATTGTTCCAGTCCTGCCACTTCTGTAGGTTTTACTGTTATAATTTTACTTGAGCTCCACATTATTCTTTTCAAGGCAGC
>TRINITY_DN110134_c1_g1_i5 from sample A5 / Example unspliced isoform:CCCCACCCCAGTGAACGTGAGGCGGCCATCCGATAAATACCGCGGCCCGTCCCGTCCGAGGCAGCGGGTATTTTCGTGTACGACTCACGACTAGTTCGCCCATTCGTTGGTTCTCGACGGCCATCCTGCTCTCCACTTAAAAGTCAACAAAATGGGATGGTCGAAAGGAAAACAAATACGTGCAGTTTACGGAGAGAGGG
ATTCGAACCCGTGACCTTGCCCTGACGCAATTCCCATGTCACAATCACACCTCCAGTCCACCACCGGCCGCTTCGGCCTCCCACCCAAGAATTCCCAGTAACTACACCCCAATTTCTTTACCATTTCTGCGTCATTTCAGTTCTCCAGTCTCAATTCGCGAACCCTTTCCGTAATCCAAAGACCCGCGGCTTTAATATTT
CCTCCTCTTCCCTCTAGCCCGCTTTTGAGGCCATCCTATATTATTTTATCCGGAGGTTTCTGTATTCGGCTTGGTGATTCTTTTTTCCATTTTTTTTGTACAGACAAGGGTTTGGGACAATTCGGCCACCGAGAGGTTTTTAACATTAGTTTTTGGTGATAAGAGTAAGCGCAGGGGATTCGATCCTGTGACATGGAGTC
ACGCGTAGGCAGTAAGTACAGACTGGGGCGCAAAATTGGCAGCGGCTCCTTCGGCGAGATCTATTTAGGCACCAATGACCAGACGAACGAGGAAGTCGCCATTAAACTGGAAAATGCGAAGACTAAGCACCCACAGCTTTTATATGAATCTATGCTTTATAGGGTCCTACAAGCAGGAACGGGAATTGCAAATATAAGAT
GGTTTGGTGTTGAAGGAGACTATAATGTCCTTGTGATGGACTTATTAGGGCCTAGCCTTGAGGATCTTTTTAACTTTTGTGGTAGGAAGTTGTCCCTGAAGACTGTTCTCATGCTTGCAGATCAGATGTTGAATAGGGTTGAGTATATTCATTCAAAAAACTTTCTTCACAGGGATATCAAACCCGACAATTTTCTCATG
GGCCTTGGGAAGAGAGCAAATCAGGTGTATATCATTGATTTTGGACTTGCAAAGAAGTATCGAGAGCCAGTGAGTCACAAGCACATCCCTTACAGAGAAAACAAAAACCTAACTGGAACTGCACGATATGCAAGCATGAATACTCACCTTGGCATTGAGCAAAGCCGAAGAGATGATTTAGAATCTCTTGGATATGTGCT
TCTGTATTTTTTGAGAGGCAGTCTTCCATGGCAGGGTTTGAAAGCTGGTACAAAAAAGCAGAAGTATGATAAGATCAGTGAAAAGAAGGTTGCAACCCCCACTGAGGTCCTGTGCAAGTCCTACCCATCAGAGTTTACAAAATATTTTCATTATTGCCGCCAATTACGCTTTGATGATAAACCGGATTATGCTTACTTGA
GGAGGATATTTCGTGATCTTTTTATTCATGAAGgtatgtattatatatgtagtaattccctttatattaaggatttgccatggcctacagcgataacaatttataacatctataagtttgatggtgtagaacttaaaacagctggttgactggtggacagatatatcaatcaatttacattgtctcaatctgtacagGAT
TTCAGTTTGACTATGTTTTTGACTGGACCATTTTGAAATATCAACAACAAACACAAATTTCTCATCCACCTCAAAA
Intron 5 GTAAGAAATT ... CATTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.46 | 157.6 | 8.3 | 28.9 |
| A2 | 16.39 | 135 | 18.6 | 26.6 |
| A3 | 17.74 | 102 | 10.6 | 22 |
| A4 | 8.78 | 126 | 13.3 | 12.1 |
| A5 | 19.88 | 42 | 2.9 | 10.4 |
| A6 | 15.36 | 314 | 28.6 | 57 |
| A7 | 9.99 | 434.9 | 32 | 48.3 |
| A8 | 16.54 | 419.4 | 41.1 | 83.1 |
| A9 | 10.17 | 347 | 30.3 | 39.3 |
| A10 | 7.08 | 326.4 | 24 | 24.9 |
>TRINITY_DN131811_c2_g1_i7 from sample A1 / Example spliced isoformGCTGGTTGTTTGGAAAAGGGGATTTTGAATATATTTTGTTATCTACATAGAGCCAAGGTATTTGGCAGAGTGGAGTTTCTGCTGATTGTGGATTGGCTTGTACAGTTTCATAATTATATTGTAAAATACATCCACAAAACAGTATACTTTGCTGTTTGGAGAAATGCAAGTTTTGATTTATTACCATTGATATCGCCAAT
GAGCTTGGAATTATACCCAGTAGTTCTGTTCAACTGTAGATCAATGAATTTGATGTGGTTTTCAATTTTTGATTACTTGGTATTGTATTCTGCTGAATTTCCAAAAGGTTATGGTTTGGATGTAGATCCATGCTGGTCCTTGATAAAAAAAGTTGTATATGCTGACATTGTTTCGTCTTCAGGAAAATGCGAAGACTAAG
CACCCACAGCTTTTATATGAATCTATGCTTTATAGGGTCCTACAAGCAGGAAGTAAGAAAATATTGACCTTTACTCACATTTCCTTTATAGGGTTCTACAAGTAGGAAGTAGGAAAATCTTGATCTTTACTCACATTTCACTGAATGCAAATTCTTAAAGGTTATTTCAAATGAGCTTACTTTATTTGTTTTTTTTTGCA
GCGGGAATTGCAAATATAAGATGGTTTGGTGTTGAAGGAGACTATAATGTCCTTGTGATGGACTTATTAGGGCCTAGCCTTGAGGATCTTTTTAACTTTTGTGGTAGGAAGTTGTCCCTGAAGACTGTTCTCATGCTTGCAGATCAGATGTTGAATAGGGTTGAGTATATTCATTCAAAAAACTTTCTTCACAGGGATAT
CAAACCCGACAATTTTCTCATGGGCCTTGGGAAGAGAGCAAATCAGGTGTATATCATTGATTTTGGACTTGCAAAGAAGTATCGAGAGCCAGTGAGTCACAAGCACATCCCTTACAGAGAAAACAAAAACCTAACTGGAACTGCACGATATGCAAGCATGAATACTCACCTTGGCATTGAGCAAAGCCGAAGAGATGATT
TAGAATCTCTTGGATATGTGCTTCTGTATTTTTTGAGAGGCAGTCTTCCTTGGCAGGGTTTGAAAGCTGGTACAAAAAAGCAGAAGTATGATAAGATTAGTGAAAAGAAGGTTGCAACCCCCACTGAGGTCTTGTGCAAGTCCTACCCATCAGAGTTTACAAAATATTTTCATTATTGCCGCCAATTACGCTTTGATGAT
AAACCGGATTATGCTTACTTGAGGAGGATATTTCGTGATCTTTTTATTCATGAAGGATTTCAGTTTGACTATGTTTTTGACTGGACCATTTTGAAATATCAACAACAAACACAAATTTCTCATCCACCTCAAAACTCTCTTGGTGCTGTTGGAGGAACGAGCACAGGACCCACGGCAGCCACTGGGCCCACAGCAGCCAC
TGGACCGACCGCAAAAACAGGTGCAACTTTCGATAGGCATTCAGGTCATCTAGGGGGTAAGGACAATGATGGCAACAAGTTTGCTGTTGATGTTGCTCGCAAAAGAATGCCAGTAGCTGTTGTGAATTCTGGTAGTTTAGCTAAGCTGAAGAGTCCTGTAGCCCATGAATCTGGGACTTCAAAAGATGTGGTAAG
>TRINITY_DN131811_c2_g1_i13 from sample A1 / Example unspliced isoform:TTAGGTTTTGCCCCGTTTTTTCTTTTTTCATTTGATGACTAATTATTTCGTTGGCTCTATAAAATCTGAATTTGTTGAGCGCTGTGGACTTTTAAGAGAATTATAGGGTATTATATGGAAAACATGGGGAATTTAGCTGATTTTTGGGGTGAATTTCAGGCACCAATGACCAGACGAACGAGGAAGTCGCCATTAAACTG
GAAAATGCGAAGACTAAGCACCCACAGCTTTTATATGAATCTATGCTTTATAGGGTCCTACAAGCAGGAACGGGAATTGCAAATATAAGATGGTTTGGTGTTGAAGGAGACTATAATGTCCTTGTGATGGACTTATTAGGGCCTAGCCTTGAGGATCTTTTTAACTTTTGTGGTAGGAAGTTGTCCCTGAAGACTGTTCT
CATGCTTGCAGATCAGATGTTGAATAGGGTTGAGTATATTCATTCAAAAAACTTTCTTCACAGGGATATCAAACCCGACAATTTTCTCATGGGCCTTGGGAAGAGAGCAAATCAGGTGTATATCATTGATTTTGGACTTGCAAAGAAGTATCGAGAGCCAGTGAGTCACAAGCACATCCCTTACAGAGAAAACAAAAACC
TAACTGGAACTGCACGATATGCAAGCATGAATACTCACCTTGGCATTGAGCAAAGCCGAAGAGATGATTTAGAATCTCTTGGATATGTGCTTCTGTATTTTTTGAGAGGCAGTCTTCCATGGCAGGGTTTGAAAGCTGGTACAAAAAAGCAGAAGTATGATAAGATTAGTGAAAAGAAGGTTGCAACCCCCACTGAGgta
agaaattttattcagtgctaactcttctgatactacagatggatttatatttcagattatcatatgcacatttttcagGTCTTGTGCAAGTCCTACCCATCAGAGTTTACAAAATATTTTCATTATTGCCGCCAATTACGCTTTGATGATAAACCGGATTATGCTTACTTGAGGAGGATATTTCGTGATCTTTTTATTCA
TGAAGGATTTCAGTTTGACTATGTTTTTGACTGGACCATTTTGAAATATCAACAACAAACACAAATTTCTCATCCACCTCAAAA
Intron 6 GTATGAGTTC ... TATTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.87 | 216 | 1 | 47 |
| A2 | 17.29 | 177 | 3 | 37 |
| A3 | 19.83 | 194 | 1 | 48 |
| A4 | 21.19 | 186 | 0 | 50 |
| A5 | 20.19 | 83 | 1 | 21 |
| A6 | 17.03 | 307 | 0 | 63 |
| A7 | 17.51 | 490 | 0 | 104 |
| A8 | 17.02 | 390 | 1 | 80 |
| A9 | 17.7 | 437 | 0 | 94 |
| A10 | 15.96 | 505.4 | 0 | 96 |
>TRINITY_DN131811_c2_g1_i7 from sample A1 / Example spliced isoformGCTGGTTGTTTGGAAAAGGGGATTTTGAATATATTTTGTTATCTACATAGAGCCAAGGTATTTGGCAGAGTGGAGTTTCTGCTGATTGTGGATTGGCTTGTACAGTTTCATAATTATATTGTAAAATACATCCACAAAACAGTATACTTTGCTGTTTGGAGAAATGCAAGTTTTGATTTATTACCATTGATATCGCCAAT
GAGCTTGGAATTATACCCAGTAGTTCTGTTCAACTGTAGATCAATGAATTTGATGTGGTTTTCAATTTTTGATTACTTGGTATTGTATTCTGCTGAATTTCCAAAAGGTTATGGTTTGGATGTAGATCCATGCTGGTCCTTGATAAAAAAAGTTGTATATGCTGACATTGTTTCGTCTTCAGGAAAATGCGAAGACTAAG
CACCCACAGCTTTTATATGAATCTATGCTTTATAGGGTCCTACAAGCAGGAAGTAAGAAAATATTGACCTTTACTCACATTTCCTTTATAGGGTTCTACAAGTAGGAAGTAGGAAAATCTTGATCTTTACTCACATTTCACTGAATGCAAATTCTTAAAGGTTATTTCAAATGAGCTTACTTTATTTGTTTTTTTTTGCA
GCGGGAATTGCAAATATAAGATGGTTTGGTGTTGAAGGAGACTATAATGTCCTTGTGATGGACTTATTAGGGCCTAGCCTTGAGGATCTTTTTAACTTTTGTGGTAGGAAGTTGTCCCTGAAGACTGTTCTCATGCTTGCAGATCAGATGTTGAATAGGGTTGAGTATATTCATTCAAAAAACTTTCTTCACAGGGATAT
CAAACCCGACAATTTTCTCATGGGCCTTGGGAAGAGAGCAAATCAGGTGTATATCATTGATTTTGGACTTGCAAAGAAGTATCGAGAGCCAGTGAGTCACAAGCACATCCCTTACAGAGAAAACAAAAACCTAACTGGAACTGCACGATATGCAAGCATGAATACTCACCTTGGCATTGAGCAAAGCCGAAGAGATGATT
TAGAATCTCTTGGATATGTGCTTCTGTATTTTTTGAGAGGCAGTCTTCCTTGGCAGGGTTTGAAAGCTGGTACAAAAAAGCAGAAGTATGATAAGATTAGTGAAAAGAAGGTTGCAACCCCCACTGAGGTCTTGTGCAAGTCCTACCCATCAGAGTTTACAAAATATTTTCATTATTGCCGCCAATTACGCTTTGATGAT
AAACCGGATTATGCTTACTTGAGGAGGATATTTCGTGATCTTTTTATTCATGAAGGATTTCAGTTTGACTATGTTTTTGACTGGACCATTTTGAAATATCAACAACAAACACAAATTTCTCATCCACCTCAAAACTCTCTTGGTGCTGTTGGAGGAACGAGCACAGGACCCACGGCAGCCACTGGGCCCACAGCAGCCAC
TGGACCGACCGCAAAAACAGGTGCAACTTTCGATAGGCATTCAGGTCATCTAGGGGGTAAGGACAATGATGGCAACAAGTTTGCTGTTGATGTTGCTCGCAAAAGAATGCCAGTAGCTGTTGTGAATTCTGGTAGTTTAGCTAAGCTGAAGAGTCCTGTAGCCCATGAATCTGGGACTTCAAAAGATGTGGTAAG
>TRINITY_DN131811_c2_g1_i10 from sample A1 / Example unspliced isoform:TTCTCATGCTTGCAGATCAGATGgtatgagttccgagtgcatggcttgatgtaactcttcaaattttgatatcaacaggatttttgcaggtattcacaaggctaatgggtacatcatattttgcagTTGAATAGGGTTGAGTATATTCATTCAAAAAACTTTCTTCACAGGGATATCAAACCCGACAATTTTCTCATGGG
CCTTGGGAAGAGAGCAAATCAGGTGTATATCATTGATTTTGGACTTGCAAAGAAGTATCGAGAGCCAGTGAGTCACAAGCACATCCCTTACAGGTGATATTCTATTCATGCAAATTTGTTCTTCTATTTCTTTTGAAACAATATCTGTTTGGAACAAAGTAGAGCTATATGTCCATACTATATAGATTTGTTTTCTAAGA
TCATCCTTCCATGAGGTTGAAGATTCTACTTATGTTCGAGTTAGTGTTTTACTTTTATAGGTTTTGCAAGGGTACATATGGAATACCTAAACTTTGCTTAAAGATGGGGCAGTTTGTTGAGTCTTGACTATTATGAAGATCAGTAAATGCTGTTTATATGTATTAATAATAGCTGTACATAATAGTTAGTATATTATGAA
ATGTATATACTTATATCTACTATATAGATATATTATATAATCTATATATCTTTTAATAAAAAAATTGTGCATTCTGCATCATTTTTGACCCCTCCAATCTGCAGTTCGGTATG
Intron 7 GTATGTATTA ... ATCTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.61 | 145.6 | 11.6 | 33.3 |
| A2 | 14.4 | 107 | 12.4 | 18 |
| A3 | 22.5 | 114.1 | 5.6 | 33.1 |
| A4 | 30.61 | 79 | 6.4 | 34.9 |
| A5 | 22.38 | 54 | 10.1 | 15.6 |
| A6 | 19.54 | 333 | 23.1 | 80.9 |
| A7 | 20.05 | 471.6 | 26.1 | 118.3 |
| A8 | 19.39 | 497.7 | 41.9 | 119.7 |
| A9 | 21.76 | 412.9 | 20.6 | 114.9 |
| A10 | 23.19 | 293.9 | 15.4 | 88.7 |
>TRINITY_DN113816_c1_g2_i8 from sample A3 / Example spliced isoformTCAAACCCGACAATTTTCTCATGGGCCTTGGGAAGAGAGCAAATCAGGTGTATATCATTGATTTTGGACTTGCAAAGAAGTATCGAGAGCCAGTGAGTCACAAGCACATCCCTTACAGAGAAAACAAAAACCTAACTGGAACTGCACGATATGCAAGCATGAATACTCACCTTGGCATTGAGCAAAGCCGAAGAGATGAT
TTAGAATCTCTTGGATATGTGCTTCTGTATTTTTTGAGAGGCAGTCTTCCTTGGCAGGGTTTGAAAGCTGGTACAAAAAAGCAGAAGTATGATAAGATCAGTGAAAAGAAGGTTGCAACCCCCACTGAGGTCCTGTGCAAGTCCTACCCATCAGAGTTTACAAAATATTTTCATTATTGCCGCCAATTACGCTTTGATGA
TAAACCGGATTATGCTTACTTGAGGAGGATATTTCGTGATCTTTTTATTCATGAAGGATTTCAGTTTGACTATGTTTTTGACTGGACTATTTTGAAATATCAACAACAAACACAAATTTCTCATCCACCTCAAAACTCTCTTGGTGCTGTTGGAGGAACGAGCACAGGACCTACGGCAGCCACTGGGCCCACAGCAGCCA
CTGGACCGACCGCAAAAACAGGTGCAACTTTCGATAGGCATTCAGGTCATCTAGGGGGTAAGGACAATGATGGCAACAAGTTTGCTGTTGATGTTGCTCGCAAAAGAATGCCAGTAGCTGTTGTGAATTCTGGTAGTTTAGCTAAGCTGAAGAGTCCTGTAGCCCATGAATCTGGGACTTCAAAAGATGTGGTAAGAAGA
GTCAGATTTTGAGCATGTTCGGTTGAGATCATTTTGCCCTTTACAATTATAATTCTTGGTTGTGTTCTGGTCATATCAATCAGGCTTTGAGCATGTTCTGAAACTGAACTCTGATGCAGAAATGATGAAAATTCATATCCATAGGTATTTTATTGTCTTCACTTTGATGGTCTGATTGATGAAAGTTGATTGTTCTCACA
AGCTGGGGGCCACCATGTTAATATGGAAGATGCCTTTACCATTTATAAAGATATTCAGTACCCTCGGAAACTAATTTACAGTGTGTAGAAAGTGCATATATGTCTTGTTATATTGTTGGGGTTTCTGTTCAGTGAGTCCTGTTTAAAGACTCGATGGTTTTGGATTTCTGTCTGAAGCAGCCCTTGTCAGATCTTATTAC
AAAAAAGTTTATTTTTCTAATGAGCATTGAATAAAATGATAAAATCAATGGATTTGAGATCAGGTAAAAGTTGGAGACATGGTATTGTGGTCTTCTAGATCAGTTTTTTTTTGGTTTTAAATGTTTTCAGTATATGCATTTGTAAGGACGGTCTATAGCAGGTTCAAGATGTCTGTTCTTCAAAACTAACTGGCAGATAT
TTTGGTACCATGCATTGTAGTGATACATGTAAATTTTGGTTAGTTGCTTTTCCAGTGTGATCTGTTTTGTTTCAGCAACCTATAAGATCTGTTGTGACAAGTCCCTGGGAAAAAATGCACAATATTTTAAGTTTGCGGGAGGGTATTTGAGGTGATAATTACAAATTATTAGAATATGCTTGCGTAATTTTATGGCCCAT
TCTAATCATTTCTTTAAATAGAAAATATACCCAAGAATCACTGGGTATCGAGTAACTGTATATTTGTGACTTGAGGTAAATAAATTTCATTCTTTCCCAGGTTAGGTCTGGGTGCAAATTCTCACGTTTGCAATGCTGAGTCATGTCAAAGCATGTATTGGCCACAGTAAGATGGATTGCTCTAAAAGGAGACTATGCCA
TGTTGCTTTTGGGAATTTGCTATTAGCTTGCAGCACGCTGGGAACAAGTTAGGGCGATGC
>TRINITY_DN113816_c1_g2_i2 from sample A3 / Example unspliced isoform:CGTGATCTTTTTATTCATGAAGgtatgtattatatatgtagtaattccctttatatttaaggatttgccatggtctacggtgataacaatttataacatctataagtttgatggtgtagaacttaaaacagctggttgactggtggacagatatatcaatcaatttacattgtctcaaattctcaatctgtacagGATTT
CAGTTTGACTATGTTTTTGACTGGACTATTTTGAAATATCAACAACAAACACAAATTTCTCATCCACCTCAAAAGTCTCTTGGTGCTGTTGGAGGAACGAGCACAGGACCTACGGCAGCCACTGGGCCCACAGCAGCCACTGGACCGACCGCAAAAACAGGTGCAACTTTCGATAGGCATTCAGGTCATCTAGGGGGTAA
GGACAATGATGGCAACAAGTTTGCTGTTGATGTTGCTCGCAAAAGAATGCCAGTAGCTGTTGTGAATTCTGGTAGTTTAGCTAAGCTGAAGAGTCCTGTAGCCCATGAATCTGGGACTTCAAAAGATGTGGTAAGAAGAGTCAGATTTTGAGCATGTTCGGTTGAGATCATTTTGCCCTTTACAATTATAATTCTTGGTT
GTGTTCTGGTCATATCAATCAGGCTTTGAGCATGTTCTGAAACTGAACTCTGATGCAGAAATGATGAAAATTCATATCCATAGGTATTTTATTGTCTTCACTTTGATGGTCTGATTGATGAAAGTTGATTGTTCTCACAAGCTGGGGGCCACCATGTTAATATGGAAGATGCCTTTACCATTTATAAAGATATTCAGTAC
CCTCGGAAACTAATTTACAGTGTGTAGAAAGTGCATATATGTCTTGTTATATTGTTGGGGTTTCTGTTCAGTGAGTCCTGTTTAAAGACTCGATGGTTTTGGATTTCTGTCTGAAGCAGCCCTTGTCAGATCTTATTACAAAAAAGTTTATTTTTCTAATGAGCATTGAATAAAATGATAAAATCAATGGATTTGAGATC
AGGTAAAAGTTGGAGACATGGTATTGTGGTCTTCTAGATCAGTTTTTTTTTGGTTTTAAATGTTTTCAGTATATGCATTTGTAAGGACGGTCTATAGCAGGTTCAAGATGTCTGTTCTTCAAAACTAACTGGCAGATATTTTGGTACCATGCATTGTAGTGATACATGTAAATTTTGGTTAGTTGCTTTTCCAGTGTGAT
CTGTTTTGTTTCAGCAACCTATAAGATCTGTTGTGACAAGTCCCTGGGAAAAAATGCACAATATTTTAAGTTTGCGGGAGGGTATTTGAGGTGATAATTACAAATTATTAGAATATGCTTGCGTAATTTTATGGCCCATTCTAATCATTTCTTTAAATAGAAAATATACCCAAGAATCACTGGGTATCGAGTAACTGTAT
ATTTGTGACTTGAGGTAAATAAATTTCATTCTTTCCCAGGTTAGGTCTGGGTGCAAATTCTCACGTTTGCAATGCTGAGTCATGTCAAAGCATGTATTGGCCACAGTAAGATGGATTGCTCTAAAAGGAGACTATGCCATGTTGCTTTTGGGAATTTGCTATTAGCTTGCAGCACGCTGGGAACAAGTTAGGGCGATGC
Intron 8 GTTGGTCAGT ... TCCATGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.52 | 137 | 31 | 58 |
| A2 | 20.22 | 146 | 18 | 56 |
| A3 | 21.62 | 145 | 41 | 39 |
| A4 | 22.4 | 97 | 17 | 39 |
| A5 | 14.04 | 49 | 9 | 7 |
| A6 | 18.49 | 280 | 66 | 61 |
| A7 | 18.65 | 421 | 82 | 111 |
| A8 | 17.26 | 393 | 74 | 90 |
| A9 | 18.76 | 327 | 61 | 90 |
| A10 | 19.14 | 338 | 63 | 97 |
>TRINITY_DN131811_c2_g1_i17 from sample A1 / Example spliced isoformAATACCGCGGCCCGTCCCGTCCGAGGCAGCGGGTATTTTCGTGTACGACTCACGACTAGTTCGCCCATTCGTTGGTTCTCGACGGCCATCCTGCTCTCCACTTAAAAGTCAACAAAATGGGATGGTCGAAAGGAAAACAAATACGTGCAGTTTACGGAGAGAGGGATTCGAACCCGTGACCTTGCCCTGACGCAATTCCC
ATGTCACAATCACACCTCCAGTCCACCACCGGCCGCTTCGGCCTCCCACTCAAGAATTCCCAGTAACTACTCCCCAATTTCTTTACCATTTCTGCGTCATTTCAGTTCTCCAGTCTCAATTCGCGAACCCTTTCCGTAATCCAAAGACCCGCGGCTTTAATATTTCCTCCTCTTCCCTCTAGCCCGCTTTTGAGGCCATC
CTATATTATTTTATTCGGAGGTTTCTGTATTCGGCTTGGTGATTCTTTTTTCCATTTTTTTTGTACAGACAAGGGTTTGGGACAATTCGGCCACCGAGAGGTTTTTAACATTAGTTTTTGGTGATAAGAGTAAGCGCAGGGGATTCGATCCTGTGACATGGAGTCACGCGTAGGCAGTAAGTACAGACTGGGGCGCAAAA
TTGGCAGCGGCTCCTTCGGCGAGATCTATTTAGGCACTAATGACCAGACGAACGAGGAAGTCGCCATTAAACTGGAAAATGCGAAGACTAAGCACCCACAGCTTTTATATGAATCTATGCTTTATAGGGTCCTACAAGCAGGAACGGGAATTGCAAATATAAGATGGTTTGGTGTTGAAGGAGACTATAATGTCCTTGTG
ATGGACTTATTAGGGCCTAGCCTTGAGGATCTTTTTAACTTTTGTGGTAGGAAGTTGTCCCTGAAGACTGTTCTCATGCTTGCAGATCAGATGTTGAATAGGGTTGAGTATATTCATTCAAAAAACTTTCTTCACAGGGATATCAAACCCGACAATTTTCTCATGGGCCTTGGGAAGAGAGCAAATCAGGTGTATATCAT
TGATTTTGGACTTGCAAAGAAGTATCGAGAGCCAGTGAGTCACAAGCACATCCCTTACAGAGAAAACAAAAACCTAACTGGAACTGCACGATATGCAAGCATGAATACTCACCTTGGCATTGAGCAAAGCCGAAGAGATGATTTAGAATCTCTTGGATATGTGCTTCTGTATTTTTTGAGAGGCAGGGTTTGAAAGCTGG
TACAAAAAAGCAGAAGTATGATAAGATTAGTGAAAAGAAGGTTGCAACCCCCACTGAGGTCCTGTGCAAGTCCTACCCATCAGAGTTTACAAAATATTTTCATTATTGCCGCCAATTACGCTTTGATGATAAACCGGATTATGCTTACTTGAGGAGGATATTTCGTGATCTTTTTATTCATGAAGGATTTCAGTTTGACT
ATGTTTTTGACTGGACCATTTTGAAATATCAACAACAAACACAAATTTCTCATCCACCTCAAAACTCTCTTGGTGCTGTTGGAGGAACGAGCACAGGACCCACGGCAGCCACTGGGCCCACAGCAGCCACTGGACCGACCGCAAAAACAGGTGCAACTTTCGATAGGCATTCAGGTCATCTAGGGGGTAAGGACAATGAT
GGCAACAAGTTTGCTGTTGATGTTGCTCGCAAAAGAATGCCAGTAGCTGTTGTGAATTCTGGTAGTTTAGCTAAGCTGAAGAGTCCTGTAGCCCATGAATCTGGGACTTCAAAAGATGTGGTAAGTTCAAATTGGTTGAAGCTTATATACCATTTGAGAAAATGCTGCTATGGTCCACCTGTGTAGGAATGAAGAAAGCC
ACCATTCTGCATTGATAATTCTGCTAGTTCATGAATTAATTCTGTTTTTAGTTTCTTGAAGTGCTAGTATGGCATTGAGCTCTCAAAGATCATCTATGTCCTGGCAAATCAGTTTCACTATTTGTTATACATTTCACCAGATATTAATTAGTCTGGTTCGAGTGTACATAAACGTTTTTTTTCTAGATAATAAATATTTG
TACAAATTGTGCCCTACTTTCCACATTGGGAAGCCAATTATTTAACGAGCATGCAATCTTAATTTGCATGCAGCTAGACCACACTCCCG
>TRINITY_DN131811_c2_g1_i4 from sample A1 / Example unspliced isoform:AGAAAACAAAAACCTAACTGGAACTGCACGATATGCAAGCATGAATACTCACCTTGGCATTGAGCAAAGCCGAAGAGATGATTTAGAATCTCTTGGATATGTGCTTCTGTATTTTTTGAGAGGCAGgttggtcagtttttctttcttgtacttgactaagatatggcattatttattgtgaatatgattttggatttaac
aatatggggtcatttttccagtcttccatggcagGGTTTGAAAGCTGGTACAAAAAAGCAGAAGTATGATAAGATTAGTGAAAAGAAGGTTGCAACCCCCACTGAGGTCCTGTGCAAGTCCTACCCATCAGAGTTTACAAAATATTTTCATTATTGCCGCCAATTACGCTTTGATGATAAACCGGATTATGCTTACTTGA
GGAGGATATTTCGTGATCTTTTTATTCATGAAGGATTTCAGTTTGACTATGTTTTTGACTGGACCATTTTGAAATATCAACAACAAACACAAATTTCTCATCCACCTCAAAA
Intron 9 GTAAGTCCTT ... TGCTTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.8 | 164 | 38 | 43 |
| A2 | 24.58 | 112 | 37 | 36 |
| A3 | 17.19 | 118 | 30 | 19 |
| A4 | 19.65 | 92 | 22 | 23 |
| A5 | 19.3 | 46 | 7 | 15 |
| A6 | 18.54 | 380 | 88 | 85 |
| A7 | 21.85 | 490 | 146 | 128 |
| A8 | 20.95 | 579.3 | 150 | 157 |
| A9 | 19.65 | 454 | 114 | 108 |
| A10 | 18.42 | 330 | 89 | 60 |
>TRINITY_DN131811_c2_g1_i7 from sample A1 / Example spliced isoformGCTGGTTGTTTGGAAAAGGGGATTTTGAATATATTTTGTTATCTACATAGAGCCAAGGTATTTGGCAGAGTGGAGTTTCTGCTGATTGTGGATTGGCTTGTACAGTTTCATAATTATATTGTAAAATACATCCACAAAACAGTATACTTTGCTGTTTGGAGAAATGCAAGTTTTGATTTATTACCATTGATATCGCCAAT
GAGCTTGGAATTATACCCAGTAGTTCTGTTCAACTGTAGATCAATGAATTTGATGTGGTTTTCAATTTTTGATTACTTGGTATTGTATTCTGCTGAATTTCCAAAAGGTTATGGTTTGGATGTAGATCCATGCTGGTCCTTGATAAAAAAAGTTGTATATGCTGACATTGTTTCGTCTTCAGGAAAATGCGAAGACTAAG
CACCCACAGCTTTTATATGAATCTATGCTTTATAGGGTCCTACAAGCAGGAAGTAAGAAAATATTGACCTTTACTCACATTTCCTTTATAGGGTTCTACAAGTAGGAAGTAGGAAAATCTTGATCTTTACTCACATTTCACTGAATGCAAATTCTTAAAGGTTATTTCAAATGAGCTTACTTTATTTGTTTTTTTTTGCA
GCGGGAATTGCAAATATAAGATGGTTTGGTGTTGAAGGAGACTATAATGTCCTTGTGATGGACTTATTAGGGCCTAGCCTTGAGGATCTTTTTAACTTTTGTGGTAGGAAGTTGTCCCTGAAGACTGTTCTCATGCTTGCAGATCAGATGTTGAATAGGGTTGAGTATATTCATTCAAAAAACTTTCTTCACAGGGATAT
CAAACCCGACAATTTTCTCATGGGCCTTGGGAAGAGAGCAAATCAGGTGTATATCATTGATTTTGGACTTGCAAAGAAGTATCGAGAGCCAGTGAGTCACAAGCACATCCCTTACAGAGAAAACAAAAACCTAACTGGAACTGCACGATATGCAAGCATGAATACTCACCTTGGCATTGAGCAAAGCCGAAGAGATGATT
TAGAATCTCTTGGATATGTGCTTCTGTATTTTTTGAGAGGCAGTCTTCCTTGGCAGGGTTTGAAAGCTGGTACAAAAAAGCAGAAGTATGATAAGATTAGTGAAAAGAAGGTTGCAACCCCCACTGAGGTCTTGTGCAAGTCCTACCCATCAGAGTTTACAAAATATTTTCATTATTGCCGCCAATTACGCTTTGATGAT
AAACCGGATTATGCTTACTTGAGGAGGATATTTCGTGATCTTTTTATTCATGAAGGATTTCAGTTTGACTATGTTTTTGACTGGACCATTTTGAAATATCAACAACAAACACAAATTTCTCATCCACCTCAAAACTCTCTTGGTGCTGTTGGAGGAACGAGCACAGGACCCACGGCAGCCACTGGGCCCACAGCAGCCAC
TGGACCGACCGCAAAAACAGGTGCAACTTTCGATAGGCATTCAGGTCATCTAGGGGGTAAGGACAATGATGGCAACAAGTTTGCTGTTGATGTTGCTCGCAAAAGAATGCCAGTAGCTGTTGTGAATTCTGGTAGTTTAGCTAAGCTGAAGAGTCCTGTAGCCCATGAATCTGGGACTTCAAAAGATGTGGTAAG
>TRINITY_DN131811_c2_g1_i1 from sample A1 / Example unspliced isoform:TGTGCAAGTCCTACCCATCAGAGTTTACAAAATATTTTCATTATTGCCGCCAATTACGCTTTGATGATAAACCGGATTATGCTTACTTGAGGAGGATATTTCGTGATCTTTTTATTCATGAAGGATTTCAGTTTGACTATGTTTTTGACTGGACCATTTTGAAATATCAACAACAAACACAAATTTCTCATCCACCTCAA
AACTCTCTTgtaagtccttttatctaatgtaattagtctccaaaatgctttccagttttaatttaatgttgttttaaagttaaacattccggttaaagcattcatccgagctgcaagattctatgggatgattgcttgtcagGGTGCTGTTGGAGGAACGAGCACAGGACCCACGGCAGCCACTGGGCCCACAGCAGCCA
CTGGACCGACCGCAAAAACAGGTGCAACTTTCGATAGGCATTCAGGTCATCTAGGGGGTAAGGACAATGATGGCAACAAGTTTGCTGTTGATGTTGCTCGCAAAAGAATGCCAGTAGCTGTTGTGAATTCTGGTAGTTTAGCTAAGCTGAAGAGTCCTGTAGCCCATGAATCTGGGACTTCAAAAGATGTGGTAAG
Intron 10 GTAAGAAAAT ... TTTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.03 | 183.7 | 5 | 46 |
| A2 | 13.94 | 117.3 | 6 | 19 |
| A3 | 17.9 | 169.7 | 0 | 37 |
| A4 | 9.36 | 155 | 6 | 16 |
| A5 | 18.9 | 103 | 0 | 24 |
| A6 | 10.16 | 230 | 2 | 26 |
| A7 | 13.19 | 467.3 | 0 | 71 |
| A8 | 12.63 | 283.7 | 0 | 41 |
| A9 | 10.57 | 423 | 2 | 50 |
| A10 | 14.64 | 425.7 | 0 | 73 |
>TRINITY_DN131811_c2_g1_i17 from sample A1 / Example spliced isoformAATACCGCGGCCCGTCCCGTCCGAGGCAGCGGGTATTTTCGTGTACGACTCACGACTAGTTCGCCCATTCGTTGGTTCTCGACGGCCATCCTGCTCTCCACTTAAAAGTCAACAAAATGGGATGGTCGAAAGGAAAACAAATACGTGCAGTTTACGGAGAGAGGGATTCGAACCCGTGACCTTGCCCTGACGCAATTCCC
ATGTCACAATCACACCTCCAGTCCACCACCGGCCGCTTCGGCCTCCCACTCAAGAATTCCCAGTAACTACTCCCCAATTTCTTTACCATTTCTGCGTCATTTCAGTTCTCCAGTCTCAATTCGCGAACCCTTTCCGTAATCCAAAGACCCGCGGCTTTAATATTTCCTCCTCTTCCCTCTAGCCCGCTTTTGAGGCCATC
CTATATTATTTTATTCGGAGGTTTCTGTATTCGGCTTGGTGATTCTTTTTTCCATTTTTTTTGTACAGACAAGGGTTTGGGACAATTCGGCCACCGAGAGGTTTTTAACATTAGTTTTTGGTGATAAGAGTAAGCGCAGGGGATTCGATCCTGTGACATGGAGTCACGCGTAGGCAGTAAGTACAGACTGGGGCGCAAAA
TTGGCAGCGGCTCCTTCGGCGAGATCTATTTAGGCACTAATGACCAGACGAACGAGGAAGTCGCCATTAAACTGGAAAATGCGAAGACTAAGCACCCACAGCTTTTATATGAATCTATGCTTTATAGGGTCCTACAAGCAGGAACGGGAATTGCAAATATAAGATGGTTTGGTGTTGAAGGAGACTATAATGTCCTTGTG
ATGGACTTATTAGGGCCTAGCCTTGAGGATCTTTTTAACTTTTGTGGTAGGAAGTTGTCCCTGAAGACTGTTCTCATGCTTGCAGATCAGATGTTGAATAGGGTTGAGTATATTCATTCAAAAAACTTTCTTCACAGGGATATCAAACCCGACAATTTTCTCATGGGCCTTGGGAAGAGAGCAAATCAGGTGTATATCAT
TGATTTTGGACTTGCAAAGAAGTATCGAGAGCCAGTGAGTCACAAGCACATCCCTTACAGAGAAAACAAAAACCTAACTGGAACTGCACGATATGCAAGCATGAATACTCACCTTGGCATTGAGCAAAGCCGAAGAGATGATTTAGAATCTCTTGGATATGTGCTTCTGTATTTTTTGAGAGGCAGGGTTTGAAAGCTGG
TACAAAAAAGCAGAAGTATGATAAGATTAGTGAAAAGAAGGTTGCAACCCCCACTGAGGTCCTGTGCAAGTCCTACCCATCAGAGTTTACAAAATATTTTCATTATTGCCGCCAATTACGCTTTGATGATAAACCGGATTATGCTTACTTGAGGAGGATATTTCGTGATCTTTTTATTCATGAAGGATTTCAGTTTGACT
ATGTTTTTGACTGGACCATTTTGAAATATCAACAACAAACACAAATTTCTCATCCACCTCAAAACTCTCTTGGTGCTGTTGGAGGAACGAGCACAGGACCCACGGCAGCCACTGGGCCCACAGCAGCCACTGGACCGACCGCAAAAACAGGTGCAACTTTCGATAGGCATTCAGGTCATCTAGGGGGTAAGGACAATGAT
GGCAACAAGTTTGCTGTTGATGTTGCTCGCAAAAGAATGCCAGTAGCTGTTGTGAATTCTGGTAGTTTAGCTAAGCTGAAGAGTCCTGTAGCCCATGAATCTGGGACTTCAAAAGATGTGGTAAGTTCAAATTGGTTGAAGCTTATATACCATTTGAGAAAATGCTGCTATGGTCCACCTGTGTAGGAATGAAGAAAGCC
ACCATTCTGCATTGATAATTCTGCTAGTTCATGAATTAATTCTGTTTTTAGTTTCTTGAAGTGCTAGTATGGCATTGAGCTCTCAAAGATCATCTATGTCCTGGCAAATCAGTTTCACTATTTGTTATACATTTCACCAGATATTAATTAGTCTGGTTCGAGTGTACATAAACGTTTTTTTTCTAGATAATAAATATTTG
TACAAATTGTGCCCTACTTTCCACATTGGGAAGCCAATTATTTAACGAGCATGCAATCTTAATTTGCATGCAGCTAGACCACACTCCCG
>TRINITY_DN131811_c2_g1_i7 from sample A1 / Example unspliced isoform:GCTGGTTGTTTGGAAAAGGGGATTTTGAATATATTTTGTTATCTACATAGAGCCAAGGTATTTGGCAGAGTGGAGTTTCTGCTGATTGTGGATTGGCTTGTACAGTTTCATAATTATATTGTAAAATACATCCACAAAACAGTATACTTTGCTGTTTGGAGAAATGCAAGTTTTGATTTATTACCATTGATATCGCCAAT
GAGCTTGGAATTATACCCAGTAGTTCTGTTCAACTGTAGATCAATGAATTTGATGTGGTTTTCAATTTTTGATTACTTGGTATTGTATTCTGCTGAATTTCCAAAAGGTTATGGTTTGGATGTAGATCCATGCTGGTCCTTGATAAAAAAAGTTGTATATGCTGACATTGTTTCGTCTTCAGGAAAATGCGAAGACTAAG
CACCCACAGCTTTTATATGAATCTATGCTTTATAGGGTCCTACAAGCAGGAAgtaagaaaatattgacctttactcacatttcctttatagggttctacaagtaggaagtaggaaaatcttgatctttactcacatttcactgaatgcaaattcttaaaggttatttcaaatgagcttactttatttgtttttttttgca
gCGGGAATTGCAAATATAAGATGGTTTGGTGTTGAAGGAGACTATAATGTCCTTGTGATGGACTTATTAGGGCCTAGCCTTGAGGATCTTTTTAACTTTTGTGGTAGGAAGTTGTCCCTGAAGACTGTTCTCATGCTTGCAGATCAGATGTTGAATAGGGTTGAGTATATTCATTCAAAAAACTTTCTTCACAGGGATAT
CAAACCCGACAATTTTCTCATGGGCCTTGGGAAGAGAGCAAATCAGGTGTATATCATTGATTTTGGACTTGCAAAGAAGTATCGAGAGCCAGTGAGTCACAAGCACATCCCTTACAGAGAAAACAAAAACCTAACTGGAACTGCACGATATGCAAGCATGAATACTCACCTTGGCATTGAGCAAAGCCGAAGAGATGATT
TAGAATCTCTTGGATATGTGCTTCTGTATTTTTTGAGAGGCAGTCTTCCTTGGCAGGGTTTGAAAGCTGGTACAAAAAAGCAGAAGTATGATAAGATTAGTGAAAAGAAGGTTGCAACCCCCACTGAGGTCTTGTGCAAGTCCTACCCATCAGAGTTTACAAAATATTTTCATTATTGCCGCCAATTACGCTTTGATGAT
AAACCGGATTATGCTTACTTGAGGAGGATATTTCGTGATCTTTTTATTCATGAAGGATTTCAGTTTGACTATGTTTTTGACTGGACCATTTTGAAATATCAACAACAAACACAAATTTCTCATCCACCTCAAAACTCTCTTGGTGCTGTTGGAGGAACGAGCACAGGACCCACGGCAGCCACTGGGCCCACAGCAGCCAC
TGGACCGACCGCAAAAACAGGTGCAACTTTCGATAGGCATTCAGGTCATCTAGGGGGTAAGGACAATGATGGCAACAAGTTTGCTGTTGATGTTGCTCGCAAAAGAATGCCAGTAGCTGTTGTGAATTCTGGTAGTTTAGCTAAGCTGAAGAGTCCTGTAGCCCATGAATCTGGGACTTCAAAAGATGTGGTAAG