NA ----> NA
Intron 1 GTGGAATTCA ... TGTCTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.72 | 15.7 | 11 | 9 |
| A2 | 32.32 | 14.7 | 0 | 7 |
| A3 | 49.29 | 10.3 | 5 | 10 |
| A4 | 34.29 | 6 | 0 | 3 |
| A5 | 30 | 5 | 0 | 2 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 14.29 | 31 | 0 | 5 |
| A8 | 39.44 | 12.3 | 0 | 8 |
| A9 | 14.16 | 24.7 | 0 | 4 |
| A10 | 15.98 | 26.3 | 0 | 5 |
>TRINITY_DN106785_c0_g1_i3 from sample A3 / Example spliced isoformATTTTGTTGTTCGGTTTTAATCAAAATAAATAAACGTGGGAGAGAGTGGGCCTAAGATATCGAAGTTCTACATTCCCAACTGATTAAATTCGATTACGACACTGTACGCAAGATCTTGCGCCGCGCCCGGAGCATGTTACCTGTGTTGGATCATGGAATGCAAATTCTACTTGCGATTGATTTAAGATCGAACTTCTGGA
TGATGCAGTGAAAAGCAGTTCGGATCTATTCATTCCTCCAATAATGCATACGAATGTCTTCAATCCAAAAATTTATGGATCACAGTTCCTTTTTGATATAGTTTGGTTTTAACCGAGCAACACAGTCTGGAATTTCCTTATTTTTTCTATGGCAATGACAAAATAGTTTGTGATTCTTCTACTCGATAGACTGATACAAC
GGGAACGATAAGGAATTGCACGATAAAAAGCCCGAGACTGTTTCAGTTTTGTCTACGCAATGGTGGAAATCGGAGAGGTCAAAACTTGTTATGTCCGGCAAAAACATGGCCGAAACATGGTTCAAAATATTAATCGGCAAGCAAAGGTCGATTGAATTTGATCCAACATTTCTGTAAAATCTGCTGGAAGATTACGATTT
TCACAAAATATGTCTCGAATCCGGCTCATGTTGGGATCATTTCGCTTATGCCAGAAGAGATCGTTCGTTCGGTTCATTTTGGGATCAAATTGCTTAAATTAATTTCGCTTTTGAGTTATTAGTAAAACCACAGTGGGAATTGTGCAATTAACGAATCCAGTAGCAGAAAAATTCGGAGCAAATAAGTCAGGTGTTTGTTA
GGCTGTGTCGACGCAGCTTGCAAAGCTAGGGTTAAATACGCAGGAATTGGCAGCGAGGAAAATATCATGGATGAAGATAAACGAAAGAGGAAGAACAAGAAGAAGAAAAATAAGTCCAACAAAGCTACAGAAGAACTTGCTGTAAAAGCAGAAGGTGCTTCTCTGGAGGAAGTCCAGGGTTTACAAGGCACAAATACCAG
CTCAATTATTAACAATGACAGTATATTGATTACAGAGTTAAAATCAAAACAGAATGGCCAGAATGCGCGTGGACCGGCTGATTTTTCTTCAGTTGAACAAGCGGCTGAACCGGAGACACGAGATCCTGAAAAGACTGAATACAATGTGGAACCCTTTACAGCCGAGACGGATGAAAATTTGCAAAAATACTATGAAGTGA
AGAATGCATTACAGAGGGAACTTGCTTATTCTCAAACGCTGAGAAGTCAATTAGCTCTTCTGGAAGAACAAATGACTAATTGTACGGTCTCCGAGGCTAGCAAAGACGAAGAGATCAAAAGATTGAAAGACAAGTTCAAACTTCAAATGCAGAAAGAGGCTAGCCTAGAGGACGATATCCAAAGATTCAAGGAAGAAAAG
ATTTCTTGGCTCCAAAAAGAGGGTACAATAGAAAAAGAAATTAAAAGACTGAAAGATGAAAACTCTTCTTGGCTTCAGAGAGAGGCTAGCCTAGAGGACGATATCCAAAGATTCAAGGAAGAAAAGATTTCTTGGCTCCAAAAAGAGGGTACAATAGAAAAAGAAATTAAAAGACTGAAAGATGAAAGCTCTTCTTGGCT
TCAAAGAGAGGCTAACACACAGGAAGAAATCAAAAGTTTGAATGATGAAAAACAACTATTGCTCCAGAAAGAGGTTTTCAGAGAGAAAGAAATTGAAAGGCTAAAGGTTGAAAACAATTCTCTACTAAACAAAGAGGCTACCACAGAGGATGAAGTTAAAAGACTGAGATTTGAAAATTTCCATCTTCAGAAAGAGGTAG
AAGAGATGAAGAAATCTTTGGAAAGTCTTTCATTAGAGCATCAACGGTTGGCAGCCCAGAGGGTTGCAGTCCGAACTGGTATACAGCAGCTTGAGAGAAATGCTACAGTTCATTCTCAACTTGAGCAGGATATTGCTATTGCTGCCACACCAGAAGTTTCAAAGCGATGGCTTGGCTGGGGTTCTGCAAAGGATCCAGTA
GCAGAGGCAGCTCGAATTGCAGAGGATTCACGCATGCAGAAAGAGGCAGCTGCTGCAATAGTTGAGAAACTAGTCATTGAAAACACTGAACTTATGGAAAAGGTTAATGAACTCAGAACATTTGTTGATCAACTCAACAAAAAGTGCAATGATCTTGCAGAATCAAAAGATAGACTACAGGAAACTGCTCAAGATGCCAC
TGTGCTGTCACCACTGACATTCAAAGAAAATAGTTCTAGTACAAAGCTGAGTAATGGTGTAGGTGTGACTAATGATCCTTTTGTTAGTATTGTTAATAACGATGTCACTTCCTACACTAAATCAGAAATAGTAGAAATCATGGAAAGCAAAGATCCCGTGACAGTGGGAAATGGAGATAATGGTCTTTCAGCATCTGATT
CTATTGGAACTGTTGAGGAGGTTAAACAGATTACTTCAAACTCTGTTAGAGAATCTGTGGATATGGCTCTTCAAAAGACTTATAAAGAAACTGTCCCATTCTCAGATGCCCCAGTCATGGGGGCTCCCATTCGATTGGTTTCTTTCCTTACAAAGTTTGTTAGTGGTGCTGATTTGGTGAAACCGAAGAATCTAGTGGCT
AGTTGAGAAATGCCCAATGGTGGTGACAACAGCTGATTGAAATATATCTCATGGGTATATCTACCAATTTAACATCACACATCTTTTATTATTCTCTGCATCTTCCATTTATTATGCTTTCTGACTTGGACATCTCTACTGTGCTACATTATGACATGACCAAATAGAATGGACAGTGGAGAGTAGATGAGGAAAATTCC
CCTTCCTTTTTCATACAGGCTATTTTGCAAGAGCTTTGTCCAGTCAAATGATATTCTTTCTTTCATTCAAGCAAGGCAGCATTTCCGTCATATTGATGCTAATTTCTAAATTTACT
>TRINITY_DN106785_c0_g1_i7 from sample A3 / Example unspliced isoform:AACTCTTGTTTCATATTTGTTGCATAACTCTTGTTTCATATTTGTTGCATAACTCTTGTTTCATATTTGTTGCTTTGTTTTATTTTGTAGGCTAGCCTAGAGGACGATATCCAAAGATTCAAGGAAGAAAAGATTTCTTGGCTCCAAAAAGAGgtggaattcatgtgtaataagctattttaagttagataggcatgctt
tatttaaggccataatttcttctagcttgcagcatgaatggaattaaaaatgtaaagtggatggagtattccatacgactgttactggcagtcatatagaagttggattgactttgatgcttcttatgttttacaagtataagtttgtcttattcctacattaatgatagatgtactaattacctattatttcttataca
acattttatattgcaagaaactgtttcttaactaggttttgtctctcagGGTACAATAGAAAAAGAAATTAAAAGACTGAAAGATGAAAGCTCTTCTTGGCTTCAAAGAGAGGCTAACACACAGGAAGAAATCAAAAGTTTGAATGATGAAAAACAACTATTGCTCCAGAAAGAGGTTTTCAGAGAGAAAGAAATTGAAA
GGCTAAAGGTTGAAAACAATTCTCTACTAAACAAAGAGGCTACCACAGAGGATGAAGTTAAAAGACTGAGATTTGAAAATTTCCATCTTCAGAAAGAGGTAGAAGAGATGAAGAAATCTTTGGAAAGTCTTTCATTAGAGCATCAACGGTTGGCAGCCCAGAGGGTTGCAGTCCGAACTGGTATACAGCAGCTTGAGAGA
AATGCTACAGTTCATTCTCAACTTGAGCAGGATATTGCTATTGCTGCCACACCA