sp|Q93VM9|THOC1_ARATH ----> THO complex subunit 1
Intron 1 GTGAGTTGTT ... GCGACTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.78 | 50.4 | 15 | 9 |
| A2 | 18.97 | 47.8 | 13 | 9 |
| A3 | 19.82 | 41.2 | 12 | 8 |
| A4 | 25.61 | 26.8 | 13 | 5 |
| A5 | 36.36 | 7 | 8 | 0 |
| A6 | 14.14 | 44.6 | 5 | 8 |
| A7 | 18.52 | 153.4 | 38 | 29 |
| A8 | 17.62 | 131 | 19 | 33 |
| A9 | 19.59 | 116.6 | 23 | 31 |
| A10 | 17.41 | 113.4 | 28 | 18 |
>TRINITY_DN45085_c2_g1_i6 from sample A7 / Example spliced isoformGCAAAGAAGTCTTTGGGTACATTGAAGGAAAACAGGATATTTTGGGAAAGCAAGAGCTCTTTGGGAGAGGGAAGCTTGTCATGCTGAGAACATGCAACCAGCTTCTACGACGCCTGTCCAAGGCAAATGATGTCGTGTTCTGTGGTCGCATTCTTATGTTTCTGGCACATTTTTTTCCATTGTCAGAGCGTTCAGCTGTT
AACATAAAGGGAATTTTCAACACATCAAACGAGACAAAGTATAAAAAGGAACATCCCCCTGATGGAATTTCTATTGACTTCAATTTTTACAAGACATTCTGGAGTTTACAGGAGTATTTTTGCAATCCTGCTCCTATGATTCACACTCTTACGAAGTGGCAGAGCTTCACTGCAAGTTTAGCAATTGTGCTGGATACTTT
TGAGGCTCAACCACTTGGTGATGATGATGCAAATGCAAGTGATCTTGATGAAGGCGAGGCTGCAGCTTTCAGTATCAAGTATCTGACAAGTAGTAAGCTGATGAGTCTAGAGTTAAAAGATCCTAGCTTTCGACGCCATGTTCTTGTGCAATGCTTAATTATATTTGACTACCTTAAGTGCCCAGGAAAAGGTGACAAGG
AGGGTCCAAAGGAAAGCATGTTCCCAGGAAAAGGTGACAAGGAGGGTCCAAAGGAAAGCATGAGAGAGGAAATCAAAGCTTATGAGGATCGTGTGAAGAAGCATCTTGAAATCACACCACCAAAAGGAAGAGAATTTCTTAGTAGCATTGAACACATACTAGAACGTGAGAAAAACTGGGTTTGGTGGAAACGAGATGGA
TGTTTGCCATTTGAAAAGCAAGTATCAGAACGGAAAACAACACAAGATGGAGTGAAAAAACGCAGGCCAAGGTGGAGGTTGGGAAACAAGGAACTTTCACAATTATGGAAATGGTCAGAGCAGAATCCGAATGCATTAACAGATGCACAGCGAGTCAAGATGCCATCAGTTACAGATTACTGGAAAGCTCTTGCTGATGA
TATGGATCCCGCTGCTGGAATTGAGGCTGAGTATCACCACAAAAATAACCGTGTTTACTGTTGGAAAGGCCTGCGCTTTTCAGCACGGCAAGACCTGGAGGGGTTTTCCAGGTTCACAGAACATGGCATTGAAGGTGTTGTTCCACCTGAACTACTTCAGCCTGAAATTCGAAATAAGTACCATGGAAAAACTTCTGAGA
AATCTAAGCGCAGTGCTAAAAAGGAAGAGGAAACAAAAGGAGCTGTTACTCAAATTGAAGAAAATCAGGCAAATGGTAAGGTTGCAGAGCTTGATGATGGTGGTCCAAATCAAGAGATAGAAGATGCACCAACTCCGGTGGATGTAGATGCCTTAGGCACAGCAACTCAGAGTGGTGCTCCCACACCTGATGAGAGTCAG
AAACAGAGCTCTGACATGGAAGCTGGTCAAGAAGGGCTGCAGTCAGAAGGTGGTAACTCACCTGATCCAAACAGTGCAGACATGGAAGAAGGCCTTATGAAGGATTCAAGTCCTCAGGATAATTCTGTCTTATCAAATGAAGGATCAAGCCCCAAGGCCGCTGAGAATAAAACAAATACCAGGAAGCGTCCCCTACCAGA
GTCTTGATTATTGGAGTCAAAGTGCATTATTATTACATAATCAGACCCTTAAATAATTGGTAAACATCCCGCAGTCATTTCTATCTATAATGGTAAATTACTTCCAGTGTGAAGTCATGTAAGCAAGCATTTTTAATATCTTGTTACCAATCATGGGAATTACTAACCCAGGATGTCTGGTATGCTTTGACTATATTAGA
ACCTATGTATTTTAGGACATTATAGAGTATTGCAGCACTGGTATGGCCAACTGTGTACATTCTTAATTGCAGGGTGAAAATGTAAGTTGTGTGATGATGCACATGATGGTGGTTTCCTTCAACTGTGGCAACCTTTATATCCCATGTTAGACATTGGCACTACAGAGAAGAGAGCAGCCTGATTACAAAGGAGGCTATTA
TTTATTCCTATGATCATAACAAAATTCATACTTAAATGGAATTTGTTTTTAACCACCTCTGAAATTACTTGATTACTTAGTTTACAAAGCATATTTATTTTATGACATGAAAAGTGACTGGGATTATGATGTTTTTTGGAGGAGTCTAAAAATTCGACGATTTCGACTTTCGGACGAGTTTTTGTTCGACAATTTCGACT
TTCGGACGAGTTTTTGTTCGACAATTTCGAATTTCGGACGAGTTTTTGGTCGGAATCTGGCGATTTTTTTTAAGAAATCCAAATTTCGTGTTGTCCAAATCATGTTTCTGAATGCATAAATGGATTCAGCACCCTCT
>TRINITY_DN45085_c2_g1_i3 from sample A7 / Example unspliced isoform:GCAAAGAAGTCTTTGGGTACATTGAAGGAAAACAGGATATTTTGGGAAAGCAAGAGCTCTTTGGGAGAGGGAAGCTTGTCATGCTGAGAACATGCAACCAGCTTCTACGACGCCTGTCCAAGGCAAATGATGTCGTGTTCTGTGGTCGCATTCTTATGTTTCTGGCACATTTTTTTCCATTGTCAGAGCGTTCAGCTGTT
AACATAAAGGGAATTTTCAACACATCAAACGAGACAAAGTATAAAAAGGAACATCCCCCTGATGGAATTTCTATTGACTTCAATTTTTACAAGACATTCTGGAGTTTACAGGAGTATTTTTGCAATCCTGCTCCTATGATTCACACTCTTACGAAGTGGCAGAGCTTCACTGCAAGTTTAGCAATTGTGCTGGATACTTT
TGAGGCTCAACCACTTGGTGATGATGATGCAAATGCAAGTGATCTTGATGAAGGCGAGGCTGCAGCTTTCAGTATCAAGTATCTGACAAGTAGTAAGCTGATGAGTCTAGAGTTAAAAGATCCTAGCTTTCGACGCCATGTTCTTGTGCAATGCTTAATTATATTTGACTACCTTAAGTGCCCAGGAAAAGGTGACAAGG
AGGGTCCAAAGGAAAGCATGTTCCCAGGAAAAGGTGACAAGGAGGGTCCAAAGGAAAGCATGAGAGAGGAAATCAAAGCTTATGAGGATCGTGTGAAGAAGCATCTTGAAATCACACCACCAAAAGGAAGAGAATTTCTTAGTAGCATTGAACACATACTAGAACGTGAGAAAAACTGGGTTTGGTGGAAACGAGATGGA
TGTTTGCCATTTGAAAAGCAAGTATCAGAACGGAAAACAACACAAGATGGAGTGAAAAAACGCAGGCCAAGGTGGAGGTTGGGAAACAAGGAACTTTCACAATTATGGAAATGGTCAGAGCAGAATCCGAATGCATTAACAGATGCACAGCGAGTCAAGATGCCATCAGTTACAGATTACTGGAAAGCTCTTGCTGATGA
TATGGATCCCGCTGCTGGAATTGAGGCTGAGTATCACCACAAAAATAACCGTgtgagttgttacaccatgttaaattttacatagctttagagtttttgtggaacttaaaaataaaagattctgacagcagatttatctgaacgaggttttccttatttcaattgataacttgtctgatatctgttcaaatttcaaactg
aactggtttcttgtctgatatctgttcaaaaatttcaaactgaactgattccaattgtgcatggaacacacatttatccaaagagtacaattttctttccgatgcacttgtgaataatctgaaataaatttttgaggtgttaagttgatgtttttggtatttgtggtgcgactttagGTTTACTGTTGGAAAGGCCTGCG
CTTTTCAGCACGGCAAGACCTGGAGGGGTTTTCCAGGTTCACAGAACATGGCATTGAAGGTGTTGTTCCACCTGAACTACTTCAGCCTGAAATTCGAAATAAGTACCATGGAAAAACTTCTGAGAAATCTAAGCGCAGTGCTAAAAAGGAAGAGGAAACAAAAGGAGCTGTTACTCAAATTGAAGAAAATCAGGCAAATG
GTAAGGTTGCAGAGCTTGATGATGGTGGTCCAAATCAAGAGATAGAAGATGCACCAACTCCGGTGGATGTAGATGCCTTAGGCACAGCAACTCAGAGTGGTGCTCCCACACCTGATGAGAGTCAGAAACAGAGCTCTGACATGGAAGCTGGTCAAGAAGGGCTGCAGTCAGAAGGTGGTAACTCACCTGATCCAAACAGT
GCAGACATGGAAGAAGGCCTTATGAAGGATTCAAGTCCTCAGGATAATTCTGTCTTATCAAATGAAGGATCAAGCCCCAAGGCCGCTGAGAATAAAACAAATACCAGGAAGCGTCCCCTACCAGAGTCTTGATTATTGGAGTCAAAGTGCATTATTATTACATAATCAGACCCTTAAATAATTGGTAAACATCCCGCAGT
CATTTCTATCTATAATGGTAAATTACTTCCAGTGTGAAGTCATGTAAGCAAGCATTTTTAATATCTTGTTACCAATCATGGGAATTACTAACCCAGGATGTCTGGTATGCTTTGACTATATTAGAACCTATGTATTTTAGGACATTATAGAGTATTGCAGCACTGGTATGGCCAACTGTGTACATTCTTAATTGCAGGGT
GAAAATGTAAGTTGTGTGATGATGCACATGATGGTGGTTTCCTTCAACTGTGGCAACCTTTATATCCCATGTTAGACATTGGCACTACAGAGAAGAGAGCAGCCTGATTACAAAGGAGGCTATTATTTATTCCTATGATCATAACAAAATTCATACTTAAATGGAATTTGTTTTTAACCACCTCTGAAATTACTTGATTA
CTTAGTTTACAAAGCATATTTATTTTATGACATGAAAAGTGACTGGGATTATGATGTTTTTTGGAGGAGTCTAAAAATTCGACGATTTCGACTTTCGGACGAGTTTTTGTTCGACAATTTCGACTTTCGGACGAGTTTTTGTTCGACAATTTCGAATTTCGGACGAGTTTTTGGTCGGAATCTGGCGATTTTTTTTAAGA
AATCCAAATTTCGTGTTGTCCAAATCATGTTTCTGAATGCATAAATGGATTCAGCACCCTCT
Intron 2 GTTTGCGTGA ... TGTTTGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.11 | 52.9 | 17 | 13 |
| A2 | 31.53 | 34.8 | 16 | 16 |
| A3 | 26.64 | 31.7 | 11 | 12 |
| A4 | 32.1 | 32.8 | 22 | 9 |
| A5 | 21.4 | 36.8 | 10 | 10 |
| A6 | 26.65 | 6.9 | 5 | 0 |
| A7 | 13.67 | 37.9 | 6 | 6 |
| A8 | 16.46 | 22.9 | 7 | 2 |
| A9 | 19.48 | 55.8 | 13 | 14 |
| A10 | 10.03 | 35.9 | 6 | 2 |
>TRINITY_DN130140_c4_g2_i5 from sample A1 / Example spliced isoformATTTAAAATAGTCAACAGCTTTCCTCACGACCCTGTCCCTTCACTTCCCACTATTAATGATATCCTATCGATATTTTCATAAAATGATTTTGGATGAAATACGTCGATTTATTATCTGTGAAATTCAAAAGATACCAGGAGGATTGTATTCGGAGGCGGAAATCAGTTGCAGGGTTTAGAAAATGGCGGAGGCTCCTGTT
CCATCTCTGCGAGTCCAGCTCTATCAGCACCAGCCTTTTCGTGAAAAAACTCCCGTCCCCGTTTCCAGCCATGCCGACAGAGACCGTGTACAGGAGGTATTCAAAGATGCTTTATCAAAGGCAGACCATCCATCAACATTTGCTGTTCAGGCAATGCAAGAGGCTGTAAAACCACAGAAACAAACTGTGCTTGTCCAAGA
TGAAAATCAATTATTAGAAAATGGTTTGCGGACTTTGCTTCAGGAGCTAGCGGCTGCTGCAGTTGAGGCTGGAGAGCAGGCAATGCAACATGGAGAGTCTATTGCAGAGGGAGAAAATAATTCTGGACTTATCCCCAGGCTTCTTGATATTGTGCTTTATCTTTGTGAACGAGGTCATGTGGAAGGTGGCATGATATTCC
AGTTATTAGAAGATTTGACTGAAATGTCAACTATGAAGGACTGCAAAGAAGTCTTTGGGTACATTGAAGGAAAACAGGATATTTTGGGAAAGCAAGAGCTCTTTGGGAGAGGGAAGCTTGTCATGCTGAGAACATGCAACCAGCTTCTACGACGCCTGTCCAAGGCAAATGATGTCGTGTTCTGTGGTCGCATTCTTATG
TTTCTGGCACATTTTTTTCCATTGTCAGAGCGTTCAGCTGTTAACATAAAGGGAATTTTCAACACATCAAACGAGACAAAGTATAAAAAGGAACATCCCCCTGATGGAATTTCTATTGACTTCAATTTTTACAAGACATTCTGGAGTTTACAGGAGTATTTTTGCAATCCTGCTCCTATGATTCACACTCTTACGAAGTG
GCAGAGCTTCACTGCAAGTTTAGCAATTGTGCTGGATACTTTTGAGGCTCAACCACTTGGTGATGATGATGCAAATGCAAGTGATCTTGATGAAGGCGAGGCTGCAGCTTTCAGTATCAAGTATCTGACAAGTAGTAAGCTGATGAGTCTAGAGTTAAAAGATCCTAGCTTTCGACGCCATGTTCTTGTGCAATGCTTAA
TTATATTTGACTACCTTAAGTGCCCAGGAAAAGGTGACAAGGAGGGTCCAAAGGAAAGCATGTTCCCAGGAAAAGGTGACAAGGAGGGTCCAAAGGAAAGCATGAGAGAGGAAATCAAAGCTTATGAGGATCGTGTGAAGAAGCATCTTGAAATCACACCACCAAAAGGAAGAGAATTTCTTAGTAGCATTGAACACATA
CTAGAACGTGAGAAAAACTGGGTTTGGTGGAAACGAGATGGATGTTTGCCATTTGAAAAGCAAGTATCAGAACGGAAAACAACACAAGATGGAGTGAAAAAACGGTATGCATTTCAAGGCTTGTATTCAGAATTTTTTTGTAAGATTTTTGCAGTTACTGGAAGAAAACATCTACAAAGCAGATTATTAGTCTGATCTGT
CTAACTTACAATGAGGAGGGCTCTCATTTTGTTGATTTATTGTTGTCATAATGAAGAATGCATTTTGTTTAGTCTGCGCAAATATCATCAACCTTGTTATAATGGATAGATCTGTTCCTCCCACCCAATGATATCAGAACTGGACTGGGCATCAAACTGGCAGAGCCAAAAAACCAGACTGGAACCGAAAAAAAACCGGA
CCAAATAACCAGTTGAGCAAAAAAAACATAAAATATTCAAATTTTGGAAAAAT
>TRINITY_DN130140_c4_g2_i11 from sample A1 / Example unspliced isoform:ATTTAAAATAGTCAACAGCTTTCCTCACGACCCTGTCCCTTCACTTCCCACTATTAATGATATCCTATCGATATTTTCATAAAATGATTTTGGATGAAATACGTCGATTTATTATCTGTGAAATTCAAAAGATACCAGGAGGATTGTATTCGGAGGCGGAAATCAGTTGCAGGGTTTAGAAAATGGCGGAGGCTCCTGTT
CCATCTCTGCGAGTCCAGCTCTATCAGCACCAGCCTTTTCGTGAAAAAACTCCCGTCCCCGTTTCCAGCCATGCCGACAGAGACCGTGTACAGGAGGTATTCAAAGATGCTTTATCAAAGGCAGACCATCCATCAACATTTGCTGTTCAGGCAATGCAAGAGGCTGTAAAACCACAGAAACAAACTGTGCTTGTCCAAGA
TGAAAATCAATTATTAGAAAATGGTTTGCGGACTTTGCTTCAGGAGCTAGCGGCTGCTGCAGTTGAGGCTGGAGAGCAGGCAATGCAACATGGAGAGTCTATTGCAGAGGGAGAAAATAATTCTGGACTTATCCCCAGGCTTCTTGgtttgcgtgaattctttctttttttctttaattttattccctagcatcatgcat
gccctatgtttagttcagttttagggcatgatcatttaattctttttaatgagaaaattgggaaaagtattacttctgacttgacccatacttttcctgtttttaatcaaggggtatttgtttgccagATATTGTGCTTTATCTTTGTGAACGAGGTCATGTGGAAGGTGGCATGATATTCCAGTTATTAGAAGATTTGA
CTGAAATGTCAACTATGAAGGACTGCAAAGAAGTCTTTGGGTACATTGAAGGAAAACAGGATATTTTGGGAAAGCAAGAGCTCTTTGGGAGAGGGAAGCTTGTCATGCTGAGAACATGCAACCAGCTTCTACGACGCCTGTCCAAGGCAAATGATGTCGTGTTCTGTGGTCGCATTCTTATGTTTCTGGCACATTTTTTT
CCATTGTCAGAGCGTTCAGCTGTTAACATAAAGGGAATTTTCAACACATCAAACGAGACAAAGTATAAAAAGGAACATCCCCCTGATGGAATTTCTATTGACTTCAATTTTTACAAGACATTCTGGAGTTTACAGGAGTATTTTTGCAATCCTGCTCCTATGATTCACACTCTTACGAAGTGGCAGAGCTTCACTGCAAG
TTTAGCAATTGTGCTGGATACTTTTGAGGCTCAACCACTTGGTGATGATGATGCAAATGCAAGTGATCTTGATGAAGGCGAGGCTGCAGCTTTCAGTATCAAGTATCTGACAAGTAGTAAGCTGATGAGTCTAGAGTTAAAAGATCCTAGCTTTCGACGCCATGTTCTTGTGCAATGCTTAATTATATTTGACTACCTTA
AGTGCCCAGGAAAAGGTGACAAGGAGGGTCCAAAGGAAAGCATGTTCCCAGGAAAAGGTGACAAGGAGGGTCCAAAGGAAAGCATGAGAGAGGAAATCAAAGCTTATGAGGATCGTGTGAAGAAGCATCTTGAAATCACACCACCAAAAGGAAGAGAATTTCTTAGTAGCATTGAACACATACTAGAACGTGAGAAAAAC
TGGGTTTGGTGGAAACGAGATGGATGTTTGCCATTTGAAAAGCAAGTATCAGAACGGAAAACAACACAAGATGGAGTGAAAAAACGCAGGCCAAGGTGGAGGTTGGGAAACAAGGAACTTTCACAATTATGGAAATGGTCAGAGCAGAATCCGAATGCATTAACAGATGCACAGCGAGTCAAGATGCCATCAGTTACAGA
TTACTGGAAAGCTCTTGCTGATGATATGGATCCCGCTGCTGGAATTGAGGCTGAGTATCACCACAAAAATAACCGTGTTTACTGTTGGAAAGGCCTGCGCTTTTCAGCACGGCAAGACCTGGAGGGGTTTTCCAGGTTCACAGAACATGGCATTGAAGGTGTTGTTCCACCTGAACTACTTCAGCCTGAAATTCGAAATA
AGTACCATGGAAAAACTTCTGAGAAATCTAAGCGCAGTGCTAAAAAGGAAGAGGAAACAAAAGGAGCTGTTACTCAAATTGAAGAAAATCAGGCAAATGGTAAGGTTGCAGAGCTTGATGATGGTGGTCCAAATCAAGAGATAGAAGATGCACCAACTCCGGTGGATGTAGATGCCTTAGGCACAGCAACTCAGAGTGGT
GCTCCCACACCTGATGAGAGTCAGAAACAGAGCTCTGACATGGAAGCTGGTCAAGAAGGGCTGCAGTCAGAAGGTGGTAACTCACCTGATCCAAACAGTGCAGACATGGAAGAAGGCCTTATGAAGGATTCAAGTCCTCAGGATAATTCTGTCTTATCAAATGAAGGATCAAGCCCCAAGGCCGCTGAGAATAAAACAAA
TACCAGGAAGCGTCCCCTACCAGAGTCTTGATTATTGGAGTCAAAGTGCATTATTATTACATAATCAGACCCTTAAATAATTGGTAAACATCCCGCAGTCATTTCTATCTATAATGGTAAATTACTTCCAGTGTGAAGTCATGTAAGCAAGCATTTTTAATATCTTGTTACCAATCATGGGAATTACTAACCCAGGATGT
CTGGTATGCTTTGACTATATTAGAACCTATGTATTTTAGGACATTATAGAGTATTGCAGCACTGGTATGGCCAACTGTGTACATTCTTAATTGCAGGGTGAAAATGTAAGTTGTGTGATGATGCACATGATGGTGGTTTCCTTCAACTGTGGCAACCTTTATATCCCATGTTAGACATTGGCACTACAGAGAAGAGAGCA
GCCTGATTACAAAGGAGGCTATTATTTATTCCTATGATCATAACAAAATTCATACTTAAATGGAATTTGTTTTTAACCAAAAAAA
Intron 3 GTAGGCAATG ... AATAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.29 | 96.7 | 31 | 6 |
| A2 | 27.92 | 44 | 17 | 0 |
| A3 | 29.1 | 80.4 | 33 | 0 |
| A4 | 39.31 | 49.4 | 32 | 0 |
| A5 | 15.56 | 32.6 | 6 | 0 |
| A6 | 30.89 | 26.9 | 12 | 0 |
| A7 | 28.36 | 86.3 | 34 | 0 |
| A8 | 15.79 | 43.1 | 8 | 0 |
| A9 | 29.84 | 80 | 34 | 0 |
| A10 | 27.49 | 95 | 36 | 0 |
>TRINITY_DN130140_c4_g2_i5 from sample A1 / Example spliced isoformATTTAAAATAGTCAACAGCTTTCCTCACGACCCTGTCCCTTCACTTCCCACTATTAATGATATCCTATCGATATTTTCATAAAATGATTTTGGATGAAATACGTCGATTTATTATCTGTGAAATTCAAAAGATACCAGGAGGATTGTATTCGGAGGCGGAAATCAGTTGCAGGGTTTAGAAAATGGCGGAGGCTCCTGTT
CCATCTCTGCGAGTCCAGCTCTATCAGCACCAGCCTTTTCGTGAAAAAACTCCCGTCCCCGTTTCCAGCCATGCCGACAGAGACCGTGTACAGGAGGTATTCAAAGATGCTTTATCAAAGGCAGACCATCCATCAACATTTGCTGTTCAGGCAATGCAAGAGGCTGTAAAACCACAGAAACAAACTGTGCTTGTCCAAGA
TGAAAATCAATTATTAGAAAATGGTTTGCGGACTTTGCTTCAGGAGCTAGCGGCTGCTGCAGTTGAGGCTGGAGAGCAGGCAATGCAACATGGAGAGTCTATTGCAGAGGGAGAAAATAATTCTGGACTTATCCCCAGGCTTCTTGATATTGTGCTTTATCTTTGTGAACGAGGTCATGTGGAAGGTGGCATGATATTCC
AGTTATTAGAAGATTTGACTGAAATGTCAACTATGAAGGACTGCAAAGAAGTCTTTGGGTACATTGAAGGAAAACAGGATATTTTGGGAAAGCAAGAGCTCTTTGGGAGAGGGAAGCTTGTCATGCTGAGAACATGCAACCAGCTTCTACGACGCCTGTCCAAGGCAAATGATGTCGTGTTCTGTGGTCGCATTCTTATG
TTTCTGGCACATTTTTTTCCATTGTCAGAGCGTTCAGCTGTTAACATAAAGGGAATTTTCAACACATCAAACGAGACAAAGTATAAAAAGGAACATCCCCCTGATGGAATTTCTATTGACTTCAATTTTTACAAGACATTCTGGAGTTTACAGGAGTATTTTTGCAATCCTGCTCCTATGATTCACACTCTTACGAAGTG
GCAGAGCTTCACTGCAAGTTTAGCAATTGTGCTGGATACTTTTGAGGCTCAACCACTTGGTGATGATGATGCAAATGCAAGTGATCTTGATGAAGGCGAGGCTGCAGCTTTCAGTATCAAGTATCTGACAAGTAGTAAGCTGATGAGTCTAGAGTTAAAAGATCCTAGCTTTCGACGCCATGTTCTTGTGCAATGCTTAA
TTATATTTGACTACCTTAAGTGCCCAGGAAAAGGTGACAAGGAGGGTCCAAAGGAAAGCATGTTCCCAGGAAAAGGTGACAAGGAGGGTCCAAAGGAAAGCATGAGAGAGGAAATCAAAGCTTATGAGGATCGTGTGAAGAAGCATCTTGAAATCACACCACCAAAAGGAAGAGAATTTCTTAGTAGCATTGAACACATA
CTAGAACGTGAGAAAAACTGGGTTTGGTGGAAACGAGATGGATGTTTGCCATTTGAAAAGCAAGTATCAGAACGGAAAACAACACAAGATGGAGTGAAAAAACGGTATGCATTTCAAGGCTTGTATTCAGAATTTTTTTGTAAGATTTTTGCAGTTACTGGAAGAAAACATCTACAAAGCAGATTATTAGTCTGATCTGT
CTAACTTACAATGAGGAGGGCTCTCATTTTGTTGATTTATTGTTGTCATAATGAAGAATGCATTTTGTTTAGTCTGCGCAAATATCATCAACCTTGTTATAATGGATAGATCTGTTCCTCCCACCCAATGATATCAGAACTGGACTGGGCATCAAACTGGCAGAGCCAAAAAACCAGACTGGAACCGAAAAAAAACCGGA
CCAAATAACCAGTTGAGCAAAAAAAACATAAAATATTCAAATTTTGGAAAAAT
>TRINITY_DN130140_c4_g2_i7 from sample A1 / Example unspliced isoform:ATTTAAAATAGTCAACAGCTTTCCTCACGACCCTGTCCCTTCACTTCCCACTATTAATGATATCCTATCGATATTTTCATAAAATGATTTTGGATGAAATACGTCGATTTATTATCTGTGAAATTCAAAAGATACCAGGAGGATTGTATTCGGAGGCGGAAATCAGTTGCAGGGTTTAGAAAATGGCGGAGGCTCCTGTT
CCATCTCTGCGAGTCCAGCTCTATCAGCACCAGCCTTTTCGTGAAAAAACTCCCGTCCCCGTTTCCAGCCATGCCGACAGAGACCGTGTACAGGAGGTATTCAAAGATGCTTTATCAAAGGCAGACCATCCATCAACATTTGCTGTTCAGGCAATGCAAGAGGCTGTAAAACCACAGAAACAAACTGTGCTTGTCCAAGA
TGAAAATCAATTATTAGAAAATGGTTTGCGGACTTTGCTTCAGGAGCTAGCGGCTGCTGCAGTTGAGGCTGGAGAGCAGGCAATGCAACATGGAGAGTCTATTGCAGAGGGAGAAAATAATTCTGGACTTATCCCCAGGCTTCTTGATATTGTGCTTTATCTTTGTGAACGAGGTCATGTGGAAGGTGGCATGATATTCC
AGTTATTAGAAGATTTGACTGAAATGTCAACTATGAAGGACTGCAAAGAAGTCTTTGGGTACATTGAAGGAAAACAGGATATTTTGGGAAAGCAAGAGCTCTTTGGGAGAGGGAAGCTTGTCATGCTGAGAACATGCAACCAGCTTCTACGACGCCTGTCCAAGGCAAATGATGTCGTGTTCTGTGGTCGCATTCTTATG
TTTCTGGCACATTTTTTTCCATTGTCAGAGCGTTCAGgtaggcaatgttgttttcacattgatatgaaatatctgatctcaaattccatatgttgctatatatttcaattttatgatagattgatttccttgttgcaattgtttcaaataatgcagCTGTTAACATAAAGGGAATTTTCAACACATCAAACGAGACAAAG
TATAAAAAGGAACATCCCCCTGATGG
Intron 4 GTTCCCAGGA ... TGACAAGGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.28 | 63 | 55 | 58 |
| A2 | 44.83 | 48 | 32 | 46 |
| A3 | 48.18 | 57 | 45 | 61 |
| A4 | 45.45 | 27 | 19 | 26 |
| A5 | 50.72 | 17 | 17 | 18 |
| A6 | 47.9 | 31 | 27 | 30 |
| A7 | 45.17 | 122 | 88 | 113 |
| A8 | 46.09 | 100 | 70 | 101 |
| A9 | 47.75 | 93 | 77 | 93 |
| A10 | 46.24 | 75 | 51 | 78 |
>TRINITY_DN109172_c0_g1_i1 from sample A2 / Example spliced isoformCAGAGCTTCACTGATACTTTTGAGGCTCAACCACTTGGTGATGATGATGCAAATGCAAGTGATCTTGATGAAGGCGAGGCTGCAGCTTTCAGTATCAAGTATCTGACAAGTAGTAAGCTGATGAGTCTAGAGTTAAAAGATCCTAGCTTTCGACGCCATGTTCTTGTGCAATGCTTAATTATATTTGACTACTTTAAGTG
CCCAGGAAAAGGTGACAAGGAGGGTCCAAAGGAAAGCATGGTCCAAAGGAAAGCATGAGAGAGGAAATCAAAGCTTATGAGGATCGTGTGAAGAAGCATCTTGAAATCACACCACCAAAAGGAAGAGAATTTCTTAGTAGCATTGAACACATACTAGAACGTGAGAAAAACTGGGTTTGGTGGAAACGAGATGGATGTTT
GCCATTTGAAAAGCAAGTATCAGAACGGAAAACAACACAAGATGGAGTGAAAAAACGCAGGCCAAGGTGGAGGTTGGGAAACAAGGAACTTTCACAATTATGGAAATGGTCAGAGCAGAATCCG
>TRINITY_DN109172_c0_g1_i5 from sample A2 / Example unspliced isoform:ATTTAAAATAGTCAACAGCTTTCCTCACGACCCTGTCCCTTCACTTCCCACTATTAATGATATCCTATCGATATTTTCATAAAATGATTTTGGATGAAATACGTCGATTTATTATCTGTGAAATTCAAAAGATACCAGGAGGATTGTATTCGGAGGCGGAAATCAGTTGCAGGGTTTAGAAAATGGCGGAGGCTCCTGTT
CCATCCCTGCGAGTCCAGCTCTATCAGCACCAGCCTTTTCGTGAAAAAACTCCCGTCCCCGTTTCCAGCCATGCCGACAGAGACCGTGTACAGGAGGTATTCAAAGATGCTTTATCAAAGGCAGACCATCCATCAACATTTGCTGTTCAGGCAATGCAAGAGGCTGTAAAACCACAGAAACAAACTGTGCTTGTCCAAGA
TGAAAATCAATTATTAGAAAATGGTTTGCGGACTTTGCTTCAGGAGCTAGCGGCTGCTGCAGTTGAGGCTGGAGAGCAGGCAATGCAACATGGAGAGTCTATTGCAGAGGGAGAAAATAATTCTGGACTTATCCCCAGGCTTCTTGATATTGTGCTTTATCTTTGTGAACGAGGTCATGTGGAAGGTGGCATGATATTCC
AGTTATTAGAAGATTTGACTGAAATGTCAACTATGAAGGACTGCAAAGAAGTCTTTGGGTACATTGAAGGAAAACAGGATATTTTGGGAAAGCAAGAGCTCTTTGGGAGAGGGAAGCTTGTCATGCTGAGAACATGCAACCAGCTTCTACGACGCCTGTCCAAGGCAAATGATGTCGTGTTCTGTGGTCGCATTCTTATG
TTTCTGGCACATTTTTTTCCATTGTCAGAGCGTTCAGCTGTTAACATAAAGGGAATTTTCAACACATCAAACGAGACAAAGTATAAAAAGGAACATCCCCCTGATGGAATTTCTATTGACTTCAATTTTTACAAGACATTCTGGAGTTTACAGGAGTATTTTTGCAATCCTGCTCCTATGATTCACACTCTTACGAAGTG
GCAGAGCTTCACTGCAAGTTTAGCAATTGTGCTGGATACTTTTGAGGCTCAACCACTTGGTGATGATGATGCAAATGCAAGTGATCTTGATGAAGGCGAGGCTGCAGCTTTCAGTATCAAGTATCTGACAAGTAGTAAGCTGATGAGTCTAGAGTTAAAAGATCCTAGCTTTCGACGCCATGTTCTTGTGCAATGCTTAA
TTATATTTGACTACTTTAAGTGCCCAGGAAAAGGTGACAAGGAGGGTCCAAAGGAAAGCATgttcccaggaaaaggtgacaaggagGGTCCAAAGGAAAGCATGAGAGAGGAAATCAAAGCTTATGAGGATCGTGTGAAGAAGCATCTTGAAATCACACCACCAAAAGGAAGAGAATTTCTTAGTAGCATTGAACACATA
CTAGAACGTGAGAAAAACTGGGTTTGGTGGAAACGAGATGGATGTTTGCCATTTGAAAAGCAAGTATCAGAACGGAAAACAACACAAGATGGAGTGAAAAAACGCAGGCCAAGGTGGAGGTTGGGAAACAAGGAACTTTCACAATTATGGAAATGGTCAGAGCAGAATCCGAATGCATTAACAGATGCACAGCGAGTCAA
GATGCCATCAGTTACAGATTACTGGAAAGCTCTTGCTGATGATATGGATCCCGCTGCTGGAATTGAGGCTGAGTATCACCACAAAAATAACCGTGTTTACTGTTGGAAAGGCCTGCGCTTTTCAGCACGGCAAGACCTGGAGGGGTTTTCCAGGTTCACAGAACATGGCATTGAAGGTGTTGTTCCACCTGAACTACTTC
AGCCTGAAATTCGAAATAAGTACCATGGAAAAACTTCTGAGAAATCTAAGCGCAGTGCTAAAAAGGAAGAGGAAACAAAAGGAGCTGTTACTCAAATTGAAGAAAATCAGGCAAATGGTAAGGTTGCAGAGCTTGATGATGGTGGTCCAAATCAAGAGATAGAAGATGCACCAACTCCGGTGGATGTAGATGCCTTAGGC
ACAGCAACTCAGAGTGGTGCTCCCACACCTGATGAGAGTCAGAAACAGAGCTCTGACATGGAAGCTGGTCAAGAAGGGCTGCAGTCAGAAGGTGGTAACTCACCTGATCCAAACAGTGCAGACATGGAAGAAGGCCTTATGAAGGATTCAAGTCCTCAGGATAATTCTGTCTTATCAAATGAAGGATCAAGCCCCAAGGC
CGCTGAGAATAAAACAAATACCAGGAAGCGTCCCCTACCAGAGTCTTGATTATTGGAGTCAAAGTGCATTATTATTACATAATCAGACCCTTAAATAATTGGTAAACATCCCGCAGTCATTTCTATCTATAATGGTAAATTACTTCCAGTGTGAAGTCATGTAAGCAAGCATTTTTAATATCTTGTTACCAATCATGGGA
ATTACTAACCCAGGATGTCTGGTATGCTTTGACTATATTAGAACCTATGTATTTTAGGACATTATAGAGTATTGCAGCACTGGTATGGCCAACTGTGTACATTCTTAATTGCAGGGTGAAAATGTAAGTTGTGTGATGATGCACATGATGGTGGTTTCCTTCAACTGTGGCAACCTTTATATCCCATGTTAGACATTGGC
ACTACAGAGAAGAGAGCAGCCTGATTACAAAGGAGGCTATTATTTATTCCTATGATCATAACAAAATTCATACTTAAATGGAATTTGTTTTTAACCACCTCTGAAATTACTTGATTACTTAGTTTACAA
Intron 5 GTAACCCTTT ... TATTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 56 | 7 | 21 |
| A2 | 16.67 | 50 | 6 | 14 |
| A3 | 25.37 | 25 | 4 | 13 |
| A4 | 16.22 | 31 | 5 | 7 |
| A5 | 22.73 | 17 | 3 | 7 |
| A6 | 21.43 | 11 | 1 | 5 |
| A7 | 23.29 | 56 | 12 | 22 |
| A8 | 20 | 26 | 11 | 2 |
| A9 | 14.55 | 47 | 1 | 15 |
| A10 | 20.72 | 44 | 8 | 15 |
>TRINITY_DN117590_c1_g1_i12 from sample A3 / Example spliced isoformCAATTTAAAATAGTCAACAGCTTTCCTCACGACCCTGTCCCTTCACTTCCCACTATTAATGATATCCTATCGATATTTTCATAAAATGATTTTGGATGAAATACGTCGATTTATTATCTGTGAAATTCAAAAGATACCAGGAGGATTGTATTCGGAGGCGGAAATCAGTTGCAGGGTTTAGAAAATGGCGGAGGCTCCTG
TTCCATCCCTGCGAGTCCAGCTCTATCAGCACCAGCCTTTTCGTGAAAAAACTCCCGTCCCCGTTTCCAGCCATGCCGACAGAGACCGTGTACAGGCCACCAAAAGGAAGAGAATTTCTTAGTAGCATTGAACACATACTAGAACGTGAGAAAAACTGGGTTTGGTGGAAACGAGATGGATGTTTGCCATTTGAAAAGCA
AGTATCAGAACGGAAAACAACACAAGATGGAGTGAAAAAACGCAGGCCAAGGTGGAGGTTGGGAAACAAGGAACTTTCACAATTATGGAAATGGTCAGAGCAGAATCCAGGTATTCAAAGATGCTTTATCAAAGGCAGACCATCCATCAACATTTGCTGTTCAGGCAATGCAAGAGGCTGTAAAACCACAGAAACAAACT
GTGCTTGTCCAAGATGAAAATCAATTATTAGAAAATGGTTTGCGGACTTTGCTTCAGGAGCTAGCGGCTGCTGCAGTTGAGGCTGGAGAGCAGGCAATGCAACATGGAGAGTCTATTGCAGAGGGAGAAAATAATTCTGGACTTATCCCCAGGCTTCTTGGTTTGCGTGAATTCTTTCTTTTTTTCTTTAATTTTATTCC
CTAGCATCATGCATGCCCTATGTTTAGTTCAGTTTTAGGGCATGATCATTTAATTCTTTTTAATGAGAAAATTGGGAAAAGTATTACTTCTGACTTGACCCATACTTTTCCTGTTTTTAATCAAGGGGTATTTGTTTGCCAGATATTGTGCTTTATCTTTGTGAACGAGGTCATGTGGAAGGTGGCATGATATTCCAGTT
ATTAGAAGATTTGACTGAAATGTCAACTATGAAGGACTGCAAAGAAGTCTTTGGGTACATTGAAGGAAAACAGGATATTTTGGGAAAGCAAGAGCTCTTTGGGAGAGGGAAGCTTGTCATGCTGAGAACATGCAACCAGCTTCTACGACGCCTGTCCAAGGCAAATGATGTCGTGTTCTGTGGTCGCATTCTTATGTTTC
TGGCACATTTTTTTCCATTGTCAGAGCGTTCAGCTGTTAACATAAAGGGAATTTTCAACACATCAAACGAGACAAAGTATAAAAAGGAACATCCCCCTGATGGAATTTCTATTGACTTCAATTTTTACAAGACATTCTGGAGTTTACAGGAGTATTTTTGCAATCCTGCTCCTATGATTCACACTCTTACGAAGTGGCAG
AGCTTCACTGCAAGTTTAGCAATTGTGCTGGATACTTTTGAGGCTCAACCACTTGGTGATGATGATGCAAATGCAAGTGATCTTGATGAAGGCGAGGCTGCAGCTTTCAGTATCAAGTATCTGACAAGTAGTAAGCTGATGAGTCTAGAGTTAAAAGATCCTAGCTTTCGACGCCATGTTCTTGTGCAATGCTTAATTAT
ATTTGACTACTTTAAGTGCCCAGGAAAAGGTGACAAGGAGGGTCCAAAGGAAAGCATGTTCCCAGGAAAAGGTGACAAGGAGGGTCCAAAGGAAAGCATGAGAGAGGAAATCAAAGCTTATGAGGATCGTGTGAAGAAGCATCTTGAAATCACACCACCAAAAGGAAGAGAATTTCTTAGTAGCATTGAACACATACTAG
AACGTGAGAAAAACTGGGTTTGGTGGAAACGAGATGGATGTTTGCCATTTGAAAAGCAAGTATCAGAACGGAAAACAACACAAGATGGAGTGAAAAAACGCAGGCCAAGGTGGAGGTTGGGAAACAAGGAACTTTCACAATTATGGAAATGGTCAGAGCAGAATCCGAATGCATTAACAGATGCACAGCGAGTCAAGATG
CCATCAGTTACAGATTACTGGAAAGCTCTTGCTGATGATATGGATCCCGCTGCTGGAATTGAGGCTGAGTATCACCACAAAAATAACCGTGTTTACTGTTGGAAAGGCCTGCGCTTTTCAGCACGGCAAGACCTGGAGGGGTTTTCCAGGTTCACAGAACATGGCATTGAAGGTGTTGTTCCACCTGAACTACTTCAGCC
TGAAATTCGAAATAAGTACCATGGAAAAACTTCTGAGAAATCTAAGCGCAGTGCTAAAAAGGAAGAGGAAACAAAAGGAGCTGTTACTCAAATTGAAGAAAATCAGGCAAATGGTAAGGTTGCAGAGCTTGATGATGGTGGTCCAAATCAAGAGATAGAAGATGCACCAACTCCGGTGGATGTAGATGCCTTAGGCACAG
CAACTCAGAGTGGTGCTCCCACACCTGATGAGAGTCAGAAACAGAGCTCTGACATGGAAGCTGGTCAAGAAGGGCTGCAGTCAGAAGGTGGTAACTCACCTGATCCAAACAGTGCAGACATGGAAGAAGGCCTTATGAAGGATTCAAGTCCTCAGGATAATTCTGTCTTATCAAATGAAGGATCAAGCCCCAAGGCCGCT
GAGAATAAAACAAATACCAGGAAGCGTCCCCTACCAGAGTCTTGATTATTGGAGTCAAAGTGCATTATTATTACATAATCAGACCCTTAAATAATTGGTAAACATCCCGCAGTCATTTCTATCTATAATGGTAAATTACTTCCAGTGTGAAGTCATGTAAGCAAGCATTTTTAATATCTTGTTACCAATCATGGGAATTA
CTAACCCAGGATGTCTGGTATGCTTTGACTATATTAGAACCTATGTATTTTAGGACATTATAGAGTATTGCAGCACTGGTATGGCCAACTGTGTACATTCTTAATTGCAGGGTGAAAATGTAAGTTGTGTGATGATGCACATGATGGTGGTTTCCTTCAACTGTGGCAACCTTTATATCCCATGTTAGACATTGGCACTA
CAGAGAAGAGAGCAGCCTGATTACAAAGGAGGCTATTATTTATTCCTAT
>TRINITY_DN117590_c1_g1_i8 from sample A3 / Example unspliced isoform:CAATTTAAAATAGTCAACAGCTTTCCTCACGACCCTGTCCCTTCACTTCCCACTATTAATGATATCCTATCGATATTTTCATAAAATGATTTTGGATGAAATACGTCGATTTATTATCTGTGAAATTCAAAAGATACCAGGAGGATTGTATTCGGAGGCGGAAATCAGTTGCAGGGTTTAGAAAATGGCGGAGGCTCCTG
TTCCATCCCTGCGAGTCCAGCTCTATCAGCACCAGCCTTTTCGTGAAAAAACTCCCGTCCCCGTTTCCAGCCATGCCGACAGAGACCGTGTACAGGAGGTATTCAAAGATGCTTTATCAAAGGCAGACCATCCATCAACATTTGCTGTTCAGGCAATGCAAGAGGCTGTAAAACCACAGAAACAAACTGTGCTTGTCCAA
GATGAAAATCAATTATTAGAAAATGGTTTGCGGACTTTGCTTCAGGAGCTAGCGGCTGCTGCAGTTGAGGCTGGAGAGCAGGCAATGCAACATGGAGAGTCTATTGCAGAGGGAGAAAATAATTCTGGACTTATCCCCAGGCTTCTTGATATTGTGCTTTATCTTTGTGAACGAGGTCATGTGGAAGGTGGCATGATATT
CCAGTTATTAGAAGATTTGACTGAAATGTCAACTATGAAGGACTGCAAAGAAGTCTTTGGGTACATTGAAGGAAAACAGGATATTTTGGGAAAGCAAGAGCTCTTTGGGAGAGGGAAGCTTGTCATGCTGAGAACATGCAACCAGCTTCTACGACGCCTGTCCAAGGCAAATGATGTCGTGTTCTGTGGTCGCATTCTTA
TGTTTCTGGCACATTTTTTTCCATTGTCAGAGCGTTCAGCTGTTAACATAAAGGGAATTTTCAACACATCAAACGAGACAAAGTATAAAAAGGAACATCCCCCTGATGGAATTTCTATTGACTTCAATTTTTACAAGACATTCTGGAGTTTACAGgtaaccctttgtgttgaataagttgtgagattctagctaattgta
tttttataagcaacttatctctttgcttactttggtttagaatgaataaagttgtttatgttgctctctgtggctttatttctgtatgatggtttgtcataacaaaaagtcttttgctgggctctttcaatttctctaatctgtggagtgaaactggactagtttttcagcatttttgttgtgcttgtgttattttgcag
GAGTATTTTTGCAATCCTGCTCCTATGATTCACACTCTTACGAAGTGGCAGAGCTTCACTGCAAGTTTAGCAATTGTGCTGGATACTTTTGAGGCTCAACCACTTGGTGATGATGATGCAAATGCAAGTGATCTTGATGAAGGCGAGGCTGCAGCTTTCAGTATCAAGTATCTGACAAGTAGTAAGCTGATGAGTCTAGA
G
Intron 6 GTTAGTGTAT ... TGGTGTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.25 | 74 | 0 | 25 |
| A2 | 37.43 | 70.2 | 10 | 42 |
| A3 | 36.01 | 76.4 | 0 | 43 |
| A4 | 28.57 | 30 | 2 | 12 |
| A5 | 24 | 19 | 2 | 6 |
| A6 | 27.15 | 37.6 | 0 | 14 |
| A7 | 30.79 | 150.6 | 0 | 67 |
| A8 | 28.02 | 115.6 | 4 | 45 |
| A9 | 31.15 | 121.6 | 1 | 55 |
| A10 | 36.55 | 109.4 | 0 | 63 |
>TRINITY_DN109172_c0_g1_i1 from sample A2 / Example spliced isoformCAGAGCTTCACTGATACTTTTGAGGCTCAACCACTTGGTGATGATGATGCAAATGCAAGTGATCTTGATGAAGGCGAGGCTGCAGCTTTCAGTATCAAGTATCTGACAAGTAGTAAGCTGATGAGTCTAGAGTTAAAAGATCCTAGCTTTCGACGCCATGTTCTTGTGCAATGCTTAATTATATTTGACTACTTTAAGTG
CCCAGGAAAAGGTGACAAGGAGGGTCCAAAGGAAAGCATGGTCCAAAGGAAAGCATGAGAGAGGAAATCAAAGCTTATGAGGATCGTGTGAAGAAGCATCTTGAAATCACACCACCAAAAGGAAGAGAATTTCTTAGTAGCATTGAACACATACTAGAACGTGAGAAAAACTGGGTTTGGTGGAAACGAGATGGATGTTT
GCCATTTGAAAAGCAAGTATCAGAACGGAAAACAACACAAGATGGAGTGAAAAAACGCAGGCCAAGGTGGAGGTTGGGAAACAAGGAACTTTCACAATTATGGAAATGGTCAGAGCAGAATCCG
>TRINITY_DN109172_c0_g1_i2 from sample A2 / Example unspliced isoform:ACTGATCTAAACCATTCATAATTGGTTTGAATTTTTTGTTTCATAGTGCCCAGGAAAAGGTGACAAGGAGGGTCCAAAGGAAAGCATGGTTAGTGTATTTACTTCAGTAGCTGTCCTTATTTTAGAATTACTATTTTGCAAAAGTTGTTTGTTTGCTATATGTCCACTGGTTGGATAATTAGTTATATGTCTGTCGGATA
AATGGTGTTTGTGGAGAGGAAATGAATCCTTATAAAGAATGTATGAAGAAGTTTCTTGAAATCATGCCACCAAAAGGAAGAGAGTTTCCTCTCATCATTGAACACATACTAGTCATGATTGCCACACAAGAGTTTTATAGTCATGGTTTAGTTATTTCAATTACTTTAACATATCCAATCTTCATTAATTTTTAGCTCAT
GAAGTCGATGAGAGGTCCCTATCATGATTTGCACGCACTTGGCATATTCTATTGTTGTAAATGTTAAGACAACCTTTTGAATTTGCTTGGATCATGTATTTGATTCTGAGGTATCTAAACCATTGTTGCAAAATTGTGTATAACAATAATTTGGCAATGTTCTGAAAAATAAAAATCAGGAAAAAGGAAATACCACTCTT
TGAAAATAGGCAAATCTTGGCAAAAAATAAAAATAAAAATGATTTTTAATCGCTGATTCTAGTGCACTGATCTAAAGTTTAAACCATACGTATCTAATTTGAATCTTCTGTTTCATAGTTCCCAGGAAAAGGTGACAAGGAGGGTCCAAAGGAAAGCATGgttagtgtatttatttcagtagctgttcttattttagaat
taataaattttgaaaagttgtttgattgctttcttgaataattagttagatgtctatctgatacatggtgtttagAGAGAGGAAATCAAAGCTTATGAGGATCGTGTGAAGAAGCATCTTGAAATCACACCACCAAAAGGAAGAGAATTTCTTAGTAGCATTGAACACATACTAGAACGTGAGAAAAACTGGGTTTGGTG
GAAACGAGATGGATGTTTGCCATTTGAAAAGCAAGTATCAGAACGGAAAACAACACAAGATGGAGTGAAAAAACGCAGGCCAAGGTGGAGGTTGGGAAACAAGGAACTTTCACAATTATGGAAATGGTCAGAGCAGAATCCG
Intron 7 GTTAGTGTAT ... TGTTTCATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.86 | 55 | 8 | 21 |
| A2 | 33.33 | 33 | 11 | 22 |
| A3 | 21.05 | 45 | 11 | 13 |
| A4 | 34.48 | 19 | 8 | 12 |
| A5 | 22.73 | 17 | 6 | 4 |
| A6 | 27.5 | 29 | 4 | 18 |
| A7 | 24.69 | 90 | 22 | 37 |
| A8 | 28.64 | 71 | 10 | 47 |
| A9 | 24.65 | 81 | 16 | 37 |
| A10 | 23.88 | 51 | 7 | 25 |
>TRINITY_DN45085_c2_g1_i6 from sample A7 / Example spliced isoformGCAAAGAAGTCTTTGGGTACATTGAAGGAAAACAGGATATTTTGGGAAAGCAAGAGCTCTTTGGGAGAGGGAAGCTTGTCATGCTGAGAACATGCAACCAGCTTCTACGACGCCTGTCCAAGGCAAATGATGTCGTGTTCTGTGGTCGCATTCTTATGTTTCTGGCACATTTTTTTCCATTGTCAGAGCGTTCAGCTGTT
AACATAAAGGGAATTTTCAACACATCAAACGAGACAAAGTATAAAAAGGAACATCCCCCTGATGGAATTTCTATTGACTTCAATTTTTACAAGACATTCTGGAGTTTACAGGAGTATTTTTGCAATCCTGCTCCTATGATTCACACTCTTACGAAGTGGCAGAGCTTCACTGCAAGTTTAGCAATTGTGCTGGATACTTT
TGAGGCTCAACCACTTGGTGATGATGATGCAAATGCAAGTGATCTTGATGAAGGCGAGGCTGCAGCTTTCAGTATCAAGTATCTGACAAGTAGTAAGCTGATGAGTCTAGAGTTAAAAGATCCTAGCTTTCGACGCCATGTTCTTGTGCAATGCTTAATTATATTTGACTACCTTAAGTGCCCAGGAAAAGGTGACAAGG
AGGGTCCAAAGGAAAGCATGTTCCCAGGAAAAGGTGACAAGGAGGGTCCAAAGGAAAGCATGAGAGAGGAAATCAAAGCTTATGAGGATCGTGTGAAGAAGCATCTTGAAATCACACCACCAAAAGGAAGAGAATTTCTTAGTAGCATTGAACACATACTAGAACGTGAGAAAAACTGGGTTTGGTGGAAACGAGATGGA
TGTTTGCCATTTGAAAAGCAAGTATCAGAACGGAAAACAACACAAGATGGAGTGAAAAAACGCAGGCCAAGGTGGAGGTTGGGAAACAAGGAACTTTCACAATTATGGAAATGGTCAGAGCAGAATCCGAATGCATTAACAGATGCACAGCGAGTCAAGATGCCATCAGTTACAGATTACTGGAAAGCTCTTGCTGATGA
TATGGATCCCGCTGCTGGAATTGAGGCTGAGTATCACCACAAAAATAACCGTGTTTACTGTTGGAAAGGCCTGCGCTTTTCAGCACGGCAAGACCTGGAGGGGTTTTCCAGGTTCACAGAACATGGCATTGAAGGTGTTGTTCCACCTGAACTACTTCAGCCTGAAATTCGAAATAAGTACCATGGAAAAACTTCTGAGA
AATCTAAGCGCAGTGCTAAAAAGGAAGAGGAAACAAAAGGAGCTGTTACTCAAATTGAAGAAAATCAGGCAAATGGTAAGGTTGCAGAGCTTGATGATGGTGGTCCAAATCAAGAGATAGAAGATGCACCAACTCCGGTGGATGTAGATGCCTTAGGCACAGCAACTCAGAGTGGTGCTCCCACACCTGATGAGAGTCAG
AAACAGAGCTCTGACATGGAAGCTGGTCAAGAAGGGCTGCAGTCAGAAGGTGGTAACTCACCTGATCCAAACAGTGCAGACATGGAAGAAGGCCTTATGAAGGATTCAAGTCCTCAGGATAATTCTGTCTTATCAAATGAAGGATCAAGCCCCAAGGCCGCTGAGAATAAAACAAATACCAGGAAGCGTCCCCTACCAGA
GTCTTGATTATTGGAGTCAAAGTGCATTATTATTACATAATCAGACCCTTAAATAATTGGTAAACATCCCGCAGTCATTTCTATCTATAATGGTAAATTACTTCCAGTGTGAAGTCATGTAAGCAAGCATTTTTAATATCTTGTTACCAATCATGGGAATTACTAACCCAGGATGTCTGGTATGCTTTGACTATATTAGA
ACCTATGTATTTTAGGACATTATAGAGTATTGCAGCACTGGTATGGCCAACTGTGTACATTCTTAATTGCAGGGTGAAAATGTAAGTTGTGTGATGATGCACATGATGGTGGTTTCCTTCAACTGTGGCAACCTTTATATCCCATGTTAGACATTGGCACTACAGAGAAGAGAGCAGCCTGATTACAAAGGAGGCTATTA
TTTATTCCTATGATCATAACAAAATTCATACTTAAATGGAATTTGTTTTTAACCACCTCTGAAATTACTTGATTACTTAGTTTACAAAGCATATTTATTTTATGACATGAAAAGTGACTGGGATTATGATGTTTTTTGGAGGAGTCTAAAAATTCGACGATTTCGACTTTCGGACGAGTTTTTGTTCGACAATTTCGACT
TTCGGACGAGTTTTTGTTCGACAATTTCGAATTTCGGACGAGTTTTTGGTCGGAATCTGGCGATTTTTTTTAAGAAATCCAAATTTCGTGTTGTCCAAATCATGTTTCTGAATGCATAAATGGATTCAGCACCCTCT
>TRINITY_DN45085_c2_g1_i2 from sample A7 / Example unspliced isoform:GCAAAGAAGTCTTTGGGTACATTGAAGGAAAACAGGATATTTTGGGAAAGCAAGAGCTCTTTGGGAGAGGGAAGCTTGTCATGCTGAGAACATGCAACCAGCTTCTACGACGCCTGTCCAAGGCAAATGATGTCGTGTTCTGTGGTCGCATTCTTATGTTTCTGGCACATTTTTTTCCATTGTCAGAGCGTTCAGCTGTT
AACATAAAGGGAATTTTCAACACATCAAACGAGACAAAGTATAAAAAGGAACATCCCCCTGATGGAATTTCTATTGACTTCAATTTTTACAAGACATTCTGGAGTTTACAGGAGTATTTTTGCAATCCTGCTCCTATGATTCACACTCTTACGAAGTGGCAGAGCTTCACTGCAAGTTTAGCAATTGTGCTGGATACTTT
TGAGGCTCAACCACTTGGTGATGATGATGCAAATGCAAGTGATCTTGATGAAGGCGAGGCTGCAGCTTTCAGTATCAAGTATCTGACAAGTAGTAAGCTGATGAGTCTAGAGTTAAAAGATCCTAGCTTTCGACGCCATGTTCTTGTGCAATGCTTAATTATATTTGACTACCTTAAGTGCCCAGGAAAAGGTGACAAGG
AGGGTCCAAAGGAAAGCATGgttagtgtatttacttcagtagctgtccttattttagaattactattttgcaaaagttgtttgtttgctatatgtccactggttggataattagttatatgtctgtcggataaatggtgtttgtggagaggaaatgaatccttataaagaatgtatgaagaagtttcttgaaatcatgcc
accaaaaggaagagagtttcctctcatcattgaacacatactagtcatgattgccacacaagagttttatagtcatggtttagttatttcaattactttaacatatccaatcttcattaatttttagctcatgaagtcgatgagaggtccctatcatgatttgcacgcacttggcatattctattgttgtaaatgttaag
acaaccttttgaatttgcttggatcatgtatttgattctgaggtatctaaaccattgttgcaaaattgtgtataacaataatttggcaatgttctgaaaaataaaaatcaggaaaaaggaaataccactctttgaaaataggcaaatcttggcaaaaaataaaaataaaaatgatttttaatcgctgattctagtgcact
gatctaaagtttaaaccatacgtatctaatttgaatcttctgtttcatagTTCCCAGGAAAAGGTGACAAGGAGGGTCCAAAGGAAAGCATGAGAGAGGAAATCAAAGCTTATGAGGATCGTGTGAAGAAGCATCTTGAAATCACACCACCAAAAGGAAGAGAATTTCTTAGTAGCATTGAACACATACTAGAACGTGAG
AAAAACTGGGTTTGGTGGAAACGAGATGGATGTTTGCCATTTGAAAAGCAAGTATCAGAACGGAAAACAACACAAGATGGAGTGAAAAAACGCAGGCCAAGGTGGAGGTTGGGAAACAAGGAACTTTCACAATTATGGAAATGGTCAGAGCAGAATCCGAATGCATTAACAGATGCACAGCGAGTCAAGATGCCATCAGT
TACAGATTACTGGAAAGCTCTTGCTGATGATATGGATCCCGCTGCTGGAATTGAGGCTGAGTATCACCACAAAAATAACCGTGTTTACTGTTGGAAAGGCCTGCGCTTTTCAGCACGGCAAGACCTGGAGGGGTTTTCCAGGTTCACAGAACATGGCATTGAAGGTGTTGTTCCACCTGAACTACTTCAGCCTGAAATTC
GAAATAAGTACCATGGAAAAACTTCTGAGAAATCTAAGCGCAGTGCTAAAAAGGAAGAGGAAACAAAAGGAGCTGTTACTCAAATTGAAGAAAATCAGGCAAATGGTAAGGTTGCAGAGCTTGATGATGGTGGTCCAAATCAAGAGATAGAAGATGCACCAACTCCGGTGGATGTAGATGCCTTAGGCACAGCAACTCAG
AGTGGTGCTCCCACACCTGATGAGAGTCAGAAACAGAGCTCTGACATGGAAGCTGGTCAAGAAGGGCTGCAGTCAGAAGGTGGTAACTCACCTGATCCAAACAGTGCAGACATGGAAGAAGGCCTTATGAAGGATTCAAGTCCTCAGGATAATTCTGTCTTATCAAATGAAGGATCAAGCCCCAAGGCCGCTGAGAATAA
AACAAATACCAGGAAGCGTCCCCTACCAGAGTCTTGATTATTGGAGTCAAAGTGCATTATTATTACATAATCAGACCCTTAAATAATTGGTAAACATCCCGCAGTCATTTCTATCTATAATGGTAAATTACTTCCAGTGTGAAGTCATGTAAGCAAGCATTTTTAATATCTTGTTACCAATCATGGGAATTACTAACCCA
GGATGTCTGGTATGCTTTGACTATATTAGAACCTATGTATTTTAGGACATTATAGAGTATTGCAGCACTGGTATGGCCAACTGTGTACATTCTTAATTGCAGGGTGAAAATGTAAGTTGTGTGATGATGCACATGATGGTGGTTTCCTTCAACTGTGGCAACCTTTATATCCCATGTTAGACATTGGCACTACAGAGAAG
AGAGCAGCCTGATTACAAAGGAGGCTATTATTTATTCCTATGATCATAACAAAATTCATACTTAAATGGAATTTGTTTTTAACCACCTCTGAAATTACTTGATTACTTAGTTTACAAAGCATATTTATTTTATGACATGAAAAGTGACTGGGATTATGATGTTTTTTGGAGGAGTCTAAAAATTCGACGATTTCGACTTT
CGGACGAGTTTTTGTTCGACAATTTCGACTTTCGGACGAGTTTTTGTTCGACAATTTCGAATTTCGGACGAGTTTTTGGTCGGAATCTGGCGATTTTTTTTAAGAAATCCAAATTTCGTGTTGTCCAAATCATGTTTCTGAATGCATAAATGGATTCAGCACCCTCT