sp|Q6DBG8|ARAD1_ARATH ----> Probable arabinosyltransferase ARAD1

Intron 1 GTAAGCCACT ... TTCTTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	69.73	69.3	131	133
A2	72.85	46.7	109	106
A3	69.96	63.4	112.1	137
A4	66.16	39.3	69.4	53
A5	70.29	24.3	49.6	46
A6	72.23	101.3	193.6	256
A7	72.25	242.7	519.4	565
A8	72.12	264.4	517.7	644
A9	71.98	202.6	440.3	447
A10	70.71	175.6	337.9	383

>TRINITY_DN116362_c0_g4_i1 from sample A2 / Example spliced isoform

ATTAGGACCGAAGGTCTCGGGTTCGACGTCCATGTCCATTGAAGAAGTCAGCAAGCTCTAAATCGAACTGGCCAGGTAAATGAGAGCCCAGTTCCAAGCATCTGGTGATGTAGGCACTTGACATGGCCGATGTGGGCTCCGACGGTCTGTTCCTCCTCTCCATTTTTCCATTCCAACACATTGCCGGCAAACTTTAATCC
CGTTCGGGAATCAGCAGCACCGACTTTCCCGACCAGGCCTTTGTTTCTGGGAATGAACAAGAGGGTTGCATAATTCTGTACAATCATCTGATCAAGATCCATCTGAAAGCGTAAAAATTAGGAATGGTTCTTGGATGAAAGGGCACCACTATGCAGATGGTTGACAGAGGTGACGTTGGGGATGGAAAAAGGGGGAAAGC
CAACATTCAATTCCGTTGAATGATTCAAGAATGCAGGAATAATGCTTTCTCATGATATTAAATAGCTCTCGATATCTCATAAGCTTCCATGCTTATAGGAAGGACACCCAGGATTATAAAATATAAAATTCAGAGTCCCAAGTGAACATGGTGTTTATTTCATATGTTTTCAATCCCCGCAGGCATATTTAGCCTTAAGA
ACATAGGCTTTGTGCTACAGCTTAAGCAGGCTTCTTGAAAATGTTTTGGGGTTTGGCTTCAAAGCCATTACCATGTTTATGCATCCTTGCCTTATTAATACTTTCCCTTTTCCTCACTACCCTTGATCTGAAAGGCTATTTTTCTACAGAGTCTACCACTTTTTCCTACTCTTCTCTTATTGAAAAACATTTGCCTCCCA
ATTATAGGGGTTCACATACTGCACAATGTGAATCACCATTGAAGGTTTACATGTATGACTTGCCTCGCAGATTCAATCTAGGAATGCTAAAGAAAAATTCTTCTGACCTGAATTTACCATGGACAAGTCCTAAAATACCCCCTTGGCCTCAAAGGTCCGGCCTCAAAAAGCAACATAGCATTGAATACTGGATGATGGTT
TACCTATTAGGTCAGCATGTTGGTGATGAGGCAGAAAGAGCAGCAGTTAGAGTGGCGGATCCTGATCAGGCTGATGTCTTTTATGTGCCATTCTTTGCTTCACTCAGTTTTAATACTCATGGGCAGAACATGAGGGATCCAGAAACAGAGTTTGACAAACAATTGCAGATTGAAGTGGTAGATATGCTGAAGAGATCAAA
ATCATGGCAGCGTTCTGGAGGCCGTGACCATGTGATTGTGATACACCATCCAAATGCATTCAGATTTCTCAGGGATGAGGTCAATGCATCTATCTTTGTAGTAGCAGATTTTGGACGGTATCCAAGGAGTGTTTCATTTCTCAGAAAAGATGTTGTGGCTCCTTATGTCCATGTTGTAGATACATATGTCAATGATGATA
CTTCAGACCCATTTGAGTCACGTACAATGCTACTTTACTTTCGAGGAAGGACTAAGCGAAAGGATGAAGGATATGTGCGTCTGGAACTAGCAAAGATTTTGGGCAATAATAAAAGAGTCCATTTTGAAGACAGCCTAGCAACAACTGAAGGTTTTGAAGCGGCCAAGAAAGGTATGCGCTCATCACGGTTCTGCTTACAC
CCAGCTGGTGACACCCCTTCCTCGTGTCGCTTGTTTGACGCCATTTAAAAGAAGCACTGGTGCCTGGATATTTGGTGCAGACGTTAGAGGCATTTCCAAAAGAAAGATGGTTAAAAATGTGGAACAAGTTGAAGCAGGTTGCACATCACTTCGAATACCAGTATCCACCCAAAAAAGATGATGCCGTTAATATGTTGTGG
AGGCAGATACATCGCAAGCTTCCCGCTGTTAACTTGGCTATTCACCGAACCAAAAGACTGAAAATCCCAGACTGGTGGGGAAGACGATAATTCATCCATGATTACACATTGGTATGTTACCAAGTCAAGAAAATACTGTTAGAGACATTGAGTTTGTCACCTGGGTTGGAAATTCATACAAATTGGGGATATGAATGTCA
GGCTGTATCTGTGAATAAACGCACACATCTGACTTGATGTTCTGCAAAGACGTTGATACGCCACATTACTTGTGCCAGATCAGCTTTTTCTTTGTGAGCTGAAATGTGAGTCTTCACTGGAGCATTGAGGTCTAGGAAGGCTTTCAGATTTTGGACTTGGCACTTGTACTGTAAAATATTATGTTTTAATAATACGCAAT
TAGAGGGAAAATATTAGTTAATGCTTTTAGGTTTTATGTGGAGCTTTCATTACTCGTAATAAAACGAATTTCCAGTAAATTTTTTCTTGATCAATAGATTGCACGATTTATGGTCTTTACTGGTTTTTGAACTCAGAAATGAGAAAATATTGAAATTCATATATTGGAATCCTTTAGTACACATTCAGAAAATCTGATTG
CTTC

>TRINITY_DN116362_c0_g4_i4 from sample A2 / Example unspliced isoform:

ATTAGGACCGAAGGTCTCGGGTTCGACGTCCATGTCCATTGAAGAAGTCAGCAAGCTCTAAATCGAACTGGCCAGGTAAATGAGAGCCCAGTTCCAAGCATCTGGTGATGTAGGCACTTGACATGGCCGATGTGGGCTCCGACGGTCTGTTCCTCCTCTCCATTTTTCCATTCCAACACATTGCCGGCAAACTTTAATCC
CGTTCGGGAATCAGCAGCACCGACTTTCCCGACCAGGCCTTTGTTTCTGGGAATGAACAAGAGGGTTGCATAATTCTGTACAATCATCTGATCAAGATCCATCTGAAAGCGTAAAAATTAGGAATGGTTCTTGGATGAAAGGGCACCACTATGCAGATGGTTGACAGAGGTGACGTTGGGGATGGAAAAAGGGGGAAAGC
CAACATTCAATTCCGTTGAATGATTCAAGAATGCAGGAATAATGCTTTCTCATGATATTAAATAGCTCTCGATATCTCATAAGCTTCCATGCTTATAGGAAGGACACCCAGGATTATAAAATATAAAATTCAGAGTCCCAAGTGAACATGGTGTTTATTTCATATGTTTTCAATCCCCGCAGGCATATTTAGCCTTAAGA
ACATAGGCTTTGTGCTACAGCTTAAGCAGGCTTCTTGAAAATGTTTTGGGGTTTGGCTTCAAAGCCATTACCATGTTTATGCATCCTTGCCTTATTAATACTTTCCCTTTTCCTCACTACCCTTGATCTGAAAGGCTATTTTTCTACAGAGTCTACCACTTTTTCCTACTCTTCTCTTATTGAAAAACATTTGCCTCCCA
ATTATAGGGGTTCACATACTGCACAATGTGAATCACCATTGAAGGTTTACATGTATGACTTGCCTCGCAGATTCAATCTAGGAATGCTAAAGAAAAATTCTTCTGACCTGAATTTACCATGGACAAGTCCTAAAATACCCCCTTGGCCTCAAAGGTCCGGCCTCAAAAAGCAACATAGCATTGAATACTGGATGATGGTT
TACCTATTAGGTCAGCATGTTGGTGATGAGGCAGAAAGAGCAGCAGTTAGAGTGGCGGATCCTGATCAGGCTGATGTCTTTTATGTGCCATTCTTTGCTTCACTCAGTTTTAATACTCATGGGCAGAACATGAGGGATCCAGAAACAGAGTTTGACAAACAATTGCAGATTGAAGTGGTAGATATGCTGAAGAGATCAAA
ATCATGGCAGCGTTCTGGAGGCCGTGACCATGTGATTGTGATACACCATCCAAATGCATTCAGATTTCTCAGGGATGAGGTCAATGCATCTATCTTTGTAGTAGCAGATTTTGGACGGTATCCAAGGAGTGTTTCATTTCTCAGAAAAGATGTTGTGGCTCCTTATGTCCATGTTGTAGATACATATGTCAATGATGATA
CTTCAGACCCATTTGAGTCACGTACAATGCTACTTTACTTTCGAGGAAGGACTAAGCGAAAGGATGAAGGATATGTGCGTCTGGAACTAGCAAAGATTTTGGGCAATAATAAAAGAGTCCATTTTGAAGACAGCCTAGCAACAACTGAAGGTTTTGAAGCGCGTGATGCTTTACCTATTCTTTGGCGATTTGGAGTTAGG
ATCCTTCTATGTGGTCCCGTTGAATGGCTTCCTGGCCAAGAAAGGTATGCGCTCATCACGGTTCTGCTTACACCCAGCTGGTGACACCCCTTCCTCGTGTCGCTTGTTTGACGCCATTgtaagccactgtgttcctgtaattgtgagtgatcggattgagctcccattcgaagatgaaattgattaccaagagttctccc
tattcttttcagTAAAAGAAGCACTGGTGCCTGGATATTTGGTGCAGACGTTAGAGGCATTTCCAAAAGAAAGATGGTTAAAAATGTGGAACAAGTTGAAGCAGGTTGCACATCACTTCGAATACCAGTATCCACCCAAAAAAGATGATGCCGTTAATATGTTGTGGAGGCAGATACATCGCAAGCTTCCCGCTGTTAAC
TTGGCTATTCACCGAACCAAAAGACTGAAAATCCCAGACTGGTGGGGAAGACGATAATTCATCCATGATTACACATTGGTATGTTACCAAGTCAAGAAAATACTGTTAGAGACATTGAGTTTGTCACCTGGGTTGGAAATTCATACAAATTGGGGATATGAATGTCAGGCTGTATCTGTGAATAAACGCACACATCTGAC
TTGATGTTCTGCAAAGACGTTGATACGCCACATTACTTGTGCCAGATCAGCTTTTTCTTTGTGAGCTGAAATGTGAGTCTTCACTGGAGCATTGAGGTCTAGGAAGGCTTTCAGATTTTGGACTTGGCACTTGTACTGTAAAATATTATGTTTTAATAATACGCAATTAGAGGGAAAATATTAGTTAATGCTTTTAGGTT
TTATGTGGAGCTTTCATTACTCGTAATAAAACGAATTTCCAGTAAATTTTTTCTTGATCAATAGATTGCACGATTTATGGTCTTTACTGGTTTTTGAACTCAGAAATGAGAAAATATTGAAATTCATATATTGGAATCCTTTAGTACACATTCAGAAAATCTGATTGCTTC

Intron 2 GTACGTGCAA ... TATATTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	5.43	195.7	2	11
A2	14.62	130.7	7	22
A3	2.14	144.7	0	3
A4	11.4	125.7	2	16
A5	4.39	67	0	3
A6	2.25	225.3	0	5
A7	5.03	649.7	0	33
A8	3.18	565.7	0	18
A9	2.52	520	0	13
A10	5.42	468	0	26

>TRINITY_DN116362_c0_g4_i3 from sample A2 / Example spliced isoform

ATTAGGACCGAAGGTCTCGGGTTCGACGTCCATGTCCATTGAAGAAGTCAGCAAGCTCTAAATCGAACTGGCCAGGTAAATGAGAGCCCAGTTCCAAGCATCTGGTGATGTAGGCACTTGACATGGCCGATGTGGGCTCCGACGGTCTGTTCCTCCTCTCCATTTTTCCATTCCAACACATTGCCGGCAAACTTTAATCC
CGTTCGGGAATCAGCAGCACCGACTTTCCCGACCAGGCCTTTGTTTCTGGGAATGAACAAGAGGGTTGCATAATTCTGTACAATCATCTGATCAAGATCCATCTGAAAGCGTAAAAATTAGGAATGGTTCTTGGATGAAAGGGCACCACTATGCAGATGGTTGACAGAGGTGACGTTGGGGATGGAAAAAGGGGGAAAGC
CAACATTCAATTCCGTTGAATGATTCAAGAATGCAGGAATAATGCTTTCTCATGATATTAAATAGCTCTCGATATCTCATAAGCTTCCATGCTTATAGGAAGGACACCCAGGATTATAAAATATAAAATTCAGAGTCCCAAGTGAACATGGTGTTTATTTCATATGTTTTCAATCCCCGCAGGCATATTTAGCCTTAAGA
ACATAGGCTTTGTGCTACAGCTTAAGCAGGCTTCTTGAAAATGTTTTGGGGTTTGGCTTCAAAGCCATTACCATGTTTATGCATCCTTGCCTTATTAATACTTTCCCTTTTCCTCACTACCCTTGATCTGAAAGGCTATTTTTCTACAGAGTCTACCACTTTTTCCTACTCTTCTCTTATTGAAAAACATTTGCCTCCCA
ATTATAGGGGTTCACATACTGCACAATGTGAATCACCATTGAAGGTTTACATGTATGACTTGCCTCGCAGATTCAATCTAGGAATGCTAAAGAAAAATTCTTCTGACCTGAATTTACCATGGACAAGTCCTAAAATACCCCCTTGGCCTCAAAGGTCCGGCCTCAAAAAGCAACATAGCATTGAATACTGGATGATGGTT
TACCTATTAGGTCAGCATGTTGGTGATGAGGCAGAAAGAGCAGCAGTTAGAGTGGCGGATCCTGATCAGGCTGATGTCTTTTATGTGCCATTCTTTGCTTCACTCAGTTTTAATACTCATGGGCAGAACATGAGGGATCCAGAAACAGAGTTTGACAAACAATTGCAGATTGAAGTGGTAGATATGCTGAAGAGATCAAA
ATCATGGCAGCGTTCTGGAGGCCGTGACCATGTGATTGTGATACACCATCCAAATGCATTCAGATTTCTCAGGGATGAGGTCAATGCATCTATCTTTGTAGTAGCAGATTTTGGACGGTATCCAAGGAGTGTTTCATTTCTCAGAAAAGATGTTGTGGCTCCTTATGTCCATGTTGTAGATACATATGTCAATGATGATA
CTTCAGACCCATTTGAGTCACGTACAATGCTACTTTACTTTCGAGGAAGGACTAAGCGAAAGGATGAAGGATATGTGCGTCTGGAACTAGCAAAGATTTTGGGCAATAATAAAAGAGTCCATTTTGAAGACAGCCTAGCAACAACTGAAGGTTTTGAAGCGGCCAAGAAAGGTATGCGCTCATCACGGTTCTGCTTACAC
CCAGCTGGTGACACCCCTTCCTCGTGTCGCTTGTTTGACGCCATTGTAAGCCACTGTGTTCCTGTAATTGTGAGTGATCGGATTGAGCTCCCATTCGAAGATGAAATTGATTACCAAGAGTTCTCCCTATTCTTTTCAGTAAAAGAAGCACTGGTGCCTGGATATTTGGTGCAGACGTTAGAGGCATTTCCAAAAGAAAG
ATGGTTAAAAATGTGGAACAAGTTGAAGCAGGTTGCACATCACTTCGAATACCAGTATCCACCCAAAAAAGATGATGCCGTTAATATGTTGTGGAGGCAGATACATCGCAAGCTTCCCGCTGTTAACTTGGCTATTCACCGAACCAAAAGACTGAAAATCCCAGACTGGTGGGGAAGACGATAATTCATCCATGATTACA
CATTGGTATGTTACCAAGTCAAGAAAATACTGTTAGAGACATTGAGTTTGTCACCTGGGTTGGAAATTCATACAAATTGGGGATATGAATGTCAGGCTGTATCTGTGAATAAACGCACACATCTGACTTGATGTTCTGCAAAGACGTTGATACGCCACATTACTTGTGCCAGATCAGCTTTTTCTTTGTGAGCTGAAATG
TGAGTCTTCACTGGAGCATTGAGGTCTAGGAAGGCTTTCAGATTTTGGACTTGGCACTTGTACTGTAAAATATTATGTTTTAATAATACGCAATTAGAGGGAAAATATTAGTTAATGCTTTTAGGTTTTATGTGGAGCTTTCATTACTCGTAATAAAACGAATTTCCAGTAAATTTTTTCTTGATCAATAGATTGCACGA
TTTATGGTCTTTACTGGTTTTTGAACTCAGAAATGAGAAAATATTGAAATTCATATATTGGAATCCTTTAGTACACATTCAGAAAATCTGATTGCTTC

>TRINITY_DN116362_c0_g4_i5 from sample A2 / Example unspliced isoform:

AGGAAGGACTAAGCGAAAGGATgtacgtgcaatttattcagcatttagtgtgtatctgcatgtttttgtctttaaagtactgtgttatgaatattatataatatatattgcagGAAGGATATGTGCGTCTGGAACTAGCAAAGATTTTGGGCAATAATAAAAGAGTCCATTTTGAAGACAGCCTAGCAACAACTGAAGGT
TTTGAAGCGGTAAAATTCCTGCCCCATATGTTTTCTGTTTCTTTTTCTGAGAGGTGTGAAAAGTTAAAACATATGTTTGAACTTTGAAATTAGATATAGAAAAAGGTCTGTGGTATCTGATAGAAAGTCTGAAAGATTAAACAATTTAAACTTTAA