sp|Q9LJ97|LEA31_ARATH ----> Late embryogenesis abundant protein 31
Intron 1 GTATCATATA ... TTTGTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.84 | 33 | 14 | 9 |
| A2 | 23.4 | 18 | 4 | 7 |
| A3 | 21.74 | 27 | 11 | 4 |
| A4 | 20.45 | 35 | 7 | 11 |
| A5 | 26.83 | 15 | 8 | 3 |
| A6 | 20.14 | 226 | 63 | 51 |
| A7 | 19.24 | 233 | 61 | 50 |
| A8 | 22.58 | 156 | 46 | 45 |
| A9 | 19.34 | 123 | 34 | 25 |
| A10 | 20.28 | 169 | 49 | 37 |
>TRINITY_DN37148_c0_g2_i3 from sample A8 / Example spliced isoformTTCAATTCAATTCCTTGCCATTCACACCCTCCTTCCACAAATCTTCAATCAATTCAATTCAATTCCTTGCCATTCTCAGTATTTTCATTTAGATTTCATGCGAAATCAGCTAGTAATCATGGTTTCTTCTTCGCTTTCTAGTTTATTAACTCGCGTTTCTGCGGGTTGCCTGAAGAATGCTTCAATATATACACAAGCGC
GCACAGGCATCGTCGACACCGTCTCGCAAGAACAAAGGCTTTTCAAACGTGAATACATTGCAGGAAATCCTCTGCCTGGCACCTCCTCTAGAATTATAATAGAGGCCGAATTCGATGACAAGCCGGAGGCTCGAGAATTCGGGATGCCGCCAACCGAACCTGCAACAGTTGGAGAGGTGTTTGAAGCGGTGGCAGACAAC
ATCCCTGGGAAGCCTGTGGAGCAGAGCGATATAAGTGCTGCCCAAAGCGCAGAGGGTCGGATGATGGGGCAGCAGGTCCCGGGAGGACCTGCTTCTACCATGCAGTCGGCTTTGAATAATTCTCAAGTATTGGATCCACCCACAATTGGAGAAACGTTGACGGTAAGTCAGAGTTTCTGTGTACCCATTTTCTGCTCATG
TTGATCAAACAATTGGTTAGTTTCGTCGCCCGCCGCCATTTGATACGACTTACTTAGAAACCGGTATTGAGTTTCTTTTGTAAACCGGGATGGTTTGGAAACCTATTCTCTTTGGGAAAGCGTTTAGTTGTTCTGAATCTCCACTGTTGGTTTTGTTGCAGGCTGCTTCAGAGCGGTTGGTGACGGATAAAGTTGTTACT
CAGGCAGACGCACAGCGAGTGAAGAGAGTGGAAAGCAGGAATGACCCGTTTGGCAGGCTGCAAGAAGGCGGAATAGGAGAGACCATGCAAGTTGCAGCGGATTTCAATGAATCCCAGGGGTTCAAGGGGAATCCTTAAGTCTGGATAGCTGTTTATATATCTGTATCTTTGCCTCTGAGGGATTTCACGCTGGAAGTGAA
GATTTTGTCGACACAATAGATAGTAGGTAGTTTACGAAATTAGTCTGAAAGTGAAATAATGGAAGCAGGTTAAGGGATCTTAGGGTTTTGGGTTTAGGTTGTTTTAAATTGTCACCGTCTATGTTTATATTGTGACTTATATACCGTTTATTTTGTGGCTTGATTATACGGTATAGTATATAATAAAGAGGTTTTGGAAT
ATTTGAAAAAGTGTTTTTGTTGGTATTTTAATCGCAGATTTGATTCTTCAAATATCCATGGAACGTTTACAAACATGTCAGTTCCCTGTTACATTTCTGCAAATTCATATACTGGGATGATTGGGTATACAGTACTTCTCACAGAATATCTCATTTGTCGTTCC
>TRINITY_DN37148_c0_g2_i2 from sample A8 / Example unspliced isoform:TTCAATTCAATTCCTTGCCATTCACACCCTCCTTCCACAAATCTTCAATCAATTCAATTCAATTCCTTGCCATTCTCAGTATTTTCATTTAGATTTCATGCGAAATCAGCTAGTAATCATGGTTTCTTCTTCGCTTTCTAGTTTATTAACTCGCGTTTCTGCGGGTTGCCTGAAGAATGCTTCAATATATACACAAGCGC
GCACAGGCATCGTCGACACCGTCTCGCAAGgtatcatataactacgccatttcgattctaattgctgtaaaaatatattgatcatcctgctaacatccttattttttgtcgcagAACAAAGGCTTTTCAAACGTGAATACATTGCAGGAAATCCTCTGCCTGGCACCTCCTCTAGAATTATAATAGAGGCCGAATTCGAT
GACAAGCCGGAGGCTCGAGAATTCGGGATGCCGCCAACCGAACCTGCAACAGTTGGAGAGGTGAATTTAATATTAAGATTTAGGTCATAGAATACTAAACTGTAAACTCAATTTCATTAATATTTACGGGTTTTGCAGGTGTTTGAAGCGGTGGCAGACAACATCCCTGGGAAGCCTGTGGAGCAGAGCGATATAAGTGC
TGCCCAAAGCGCAGAGGGTCGGATGATGGGGCAGCAGGTCCCGGGAGGACCTGCTTCTACCATGCAGTCGGCTTTGAATAATTCTCAAGTATTGGATCCACCCACAATTGGAGAAACGTTGACGGTAAGTCAGAGTTTCTGTGTACCCATTTTCTGCTCATGTTGATCAAACAATTGGTTAGTTTCGTCGCCCGCCGCCA
TTTGATACGACTTACTTAGAAACCGGTATTGAGTTTCTTTTGTAAACCGGGATGGTTTGGAAACCTATTCTCTTTGGGAAAGCGTTTAGTTGTTCTGAATCTCCACTGTTGGTTTTGTTGCAGGCTGCTTCAGAGCGGTTGGTGACGGATAAAGTTGTTACTCAGGCAGACGCACAGCGAGTGAAGAGAGTGGAAAGCAG
GAATGACCCGTTTGGCAGGCTGCAAGAAGGCGGAATAGGAGAGACCATGCAAGTTGCAGCGGATTTCAATGAATCCCAGGGGTTCAAGGGGAATCCTTAAGTCTGGATAGCTGTTTATATATCTGTATCTTTGCCTCTGAGGGATTTCACGCTGGAAGTGAAGATTTTGTCGACACAATAGATAGTAGGTAGTTTACGAA
ATTAGTCTGAAAGTGAAATAATGGAAGCAGGTTAAGGGATCTTAGGGTTTTGGGTTTAGGTTGTTTTAAATTGTCACCGTCTATGTTTATATTGTGACTTATATACCGTTTATTTTGTGGCTTGATTATACGGTATAGTATATAATAAAGAGGTTTTGGAATATTTGAAAAAGTGTTTTTGTTGGTATTTTAATCGCAGA
TTTGATTCTTCAAATATCCATGGAACGTTTACAAACATGTCAGTTCCCTGTTACATTTCTGCAAATTCATATACTGGGATGATTGGGTATACAGTACTTCTCACAGAATATCTCATTTGTCGTTCC
Intron 2 GTAAGTCAGA ... TTTGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.8 | 52 | 5 | 16 |
| A2 | 23.71 | 41 | 11.5 | 14 |
| A3 | 18.52 | 66 | 9 | 21 |
| A4 | 27.27 | 36 | 6 | 21 |
| A5 | 22.22 | 14 | 2 | 6 |
| A6 | 19.38 | 497.5 | 93.3 | 146 |
| A7 | 17.91 | 479 | 101 | 108 |
| A8 | 18.52 | 396 | 70 | 110 |
| A9 | 19.7 | 266 | 45.5 | 85 |
| A10 | 18.72 | 406 | 87 | 100 |
>TRINITY_DN37148_c0_g2_i1 from sample A8 / Example spliced isoformTTCAATTCAATTCCTTGCCATTCACACCCTCCTTCCACAAATCTTCAATCAATTCAATTCAATTCCTTGCCATTCTCAGTATTTTCATTTAGATTTCATGCGAAATCAGCTAGTAATCATGGTTTCTTCTTCGCTTTCTAGTTTATTAACTCGCGTTTCTGCGGGTTGCCTGAAGAATGCTTCAATATATACACAAGCGC
GCACAGGCATCGTCGACACCGTCTCGCAAGAACAAAGGCTTTTCAAACGTGAATACATTGCAGGAAATCCTCTGCCTGGCACCTCCTCTAGAATTATAATAGAGGCCGAATTCGATGACAAGCCGGAGGCTCGAGAATTCGGGATGCCGCCAACCGAACCTGCAACAGTTGGAGAGGTGTTTGAAGCGGTGGCAGACAAC
ATCCCTGGGAAGCCTGTGGAGCAGAGCGATATAAGTGCTGCCCAAAGCGCAGAGGGTCGGATGATGGGGCAGCAGGTCCCGGGAGGACCTGCTTCTACCATGCAGTCGGCTTTGAATAATTCTCAAGTATTGGATCCACCCACAATTGGAGAAACGTTGACGGCTGCTTCAGAGCGGTTGGTGACGGATAAAGTTGTTAC
TCAGGCAGACGCACAGCGAGTGAAGAGAGTGGAAAGCAGGAATGACCCGTTTGGCAGGCTGCAAGAAGGCGGAATAGGAGAGACCATGCAAGTTGCAGCGGATTTCAATGAATCCCAGGGGTTCAAGGGGAATCCTTAAGTCTGGATAGCTGTTTATATATCTGTATCTTTGCCTCTGAGGGATTTCACGCTGGAAGTGA
AGATTTTGTCGACACAATAGATAGTAGGTAGTTTACGAAATTAGTCTGAAAGTGAAATAATGGAAGCAGGTTAAGGGATCTTAGGGTTTTGGGTTTAGGTTGTTTTAAATTGTCACCGTCTATGTTTATATTGTGACTTATATACCGTTTATTTTGTGGCTTGATTATACGGTATAGTATATAATAAAGAGGTTTTGGAA
TATTTGAAAAAGTGTTTTTGTTGGTATTTTAATCGCAGATTTGATTCTTCAAATATCCATGGAACGTTTACAAACATGTCAGTTCCCTGTTACATTTCTGCAAATTCATATACTGGGATGATTGGGTATACAGTACTTCTCACAGAATATCTCATTTGTCGTTCC
>TRINITY_DN37148_c0_g2_i3 from sample A8 / Example unspliced isoform:TTCAATTCAATTCCTTGCCATTCACACCCTCCTTCCACAAATCTTCAATCAATTCAATTCAATTCCTTGCCATTCTCAGTATTTTCATTTAGATTTCATGCGAAATCAGCTAGTAATCATGGTTTCTTCTTCGCTTTCTAGTTTATTAACTCGCGTTTCTGCGGGTTGCCTGAAGAATGCTTCAATATATACACAAGCGC
GCACAGGCATCGTCGACACCGTCTCGCAAGAACAAAGGCTTTTCAAACGTGAATACATTGCAGGAAATCCTCTGCCTGGCACCTCCTCTAGAATTATAATAGAGGCCGAATTCGATGACAAGCCGGAGGCTCGAGAATTCGGGATGCCGCCAACCGAACCTGCAACAGTTGGAGAGGTGTTTGAAGCGGTGGCAGACAAC
ATCCCTGGGAAGCCTGTGGAGCAGAGCGATATAAGTGCTGCCCAAAGCGCAGAGGGTCGGATGATGGGGCAGCAGGTCCCGGGAGGACCTGCTTCTACCATGCAGTCGGCTTTGAATAATTCTCAAGTATTGGATCCACCCACAATTGGAGAAACGTTGACGgtaagtcagagtttctgtgtacccattttctgctcatg
ttgatcaaacaattggttagtttcgtcgcccgccgccatttgatacgacttacttagaaaccggtattgagtttcttttgtaaaccgggatggtttggaaacctattctctttgggaaagcgtttagttgttctgaatctccactgttggttttgttgcagGCTGCTTCAGAGCGGTTGGTGACGGATAAAGTTGTTACT
CAGGCAGACGCACAGCGAGTGAAGAGAGTGGAAAGCAGGAATGACCCGTTTGGCAGGCTGCAAGAAGGCGGAATAGGAGAGACCATGCAAGTTGCAGCGGATTTCAATGAATCCCAGGGGTTCAAGGGGAATCCTTAAGTCTGGATAGCTGTTTATATATCTGTATCTTTGCCTCTGAGGGATTTCACGCTGGAAGTGAA
GATTTTGTCGACACAATAGATAGTAGGTAGTTTACGAAATTAGTCTGAAAGTGAAATAATGGAAGCAGGTTAAGGGATCTTAGGGTTTTGGGTTTAGGTTGTTTTAAATTGTCACCGTCTATGTTTATATTGTGACTTATATACCGTTTATTTTGTGGCTTGATTATACGGTATAGTATATAATAAAGAGGTTTTGGAAT
ATTTGAAAAAGTGTTTTTGTTGGTATTTTAATCGCAGATTTGATTCTTCAAATATCCATGGAACGTTTACAAACATGTCAGTTCCCTGTTACATTTCTGCAAATTCATATACTGGGATGATTGGGTATACAGTACTTCTCACAGAATATCTCATTTGTCGTTCC
Intron 3 GTGAATTTAA ... GGTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.77 | 41 | 13.8 | 6 |
| A2 | 17.95 | 32 | 9.5 | 7 |
| A3 | 27.45 | 33 | 7.3 | 12.5 |
| A4 | 16.53 | 29 | 6 | 5.8 |
| A5 | 15 | 17 | 9 | 3 |
| A6 | 13.23 | 232 | 48.3 | 35.4 |
| A7 | 16.95 | 272 | 62.5 | 55.5 |
| A8 | 18.67 | 221 | 42.8 | 50.8 |
| A9 | 10.26 | 154 | 31.8 | 17.6 |
| A10 | 19.38 | 246 | 41.5 | 59.1 |
>TRINITY_DN111473_c0_g1_i1 from sample A1 / Example spliced isoformTTCAATTCAATTCCTTGCCATTCACACCCTCCTTCCACAAATCTTCAATCAATTCAATTCAATTCCTTGCCATTCTCAGTATTTTCATTTAGATTTCATGCGAAATCAGCTAGTAATCATGGTTTCTTCTTCGCTTTCTAGTTTATTAACTCGCGTTTCTGCGGGTTGCCTGAAGAATGCTTCAATATATACACAAGCGC
GCACAGGCATCGTCGACACCGTCTCGCAAGAACAAAGGCTTTTCAAACGTGAATACATTGCAGGAAATCCTCTGCCTGGCACCTCCTCTAGAATTATAATAGAGGCCGAATTCGATGACAAGCCGGAGGCTCGAGAATTCGGGATGCCGCCAACCGAACCTGCAACAGTTGGAGAGGTGTTTGAAGCGGTGGCAGACAAC
ATCCCTGGGAAGCCTGTGGAGCAGAGCGATATAAGTGCTGCCCAAAGCGCAGAGGGTCGGATGATGGGGCAGCAGGTCCCGGGAGAACCTGCTTCTACCATGCAGTCGGCTTTGAATAATTCTCAAGTATTGGATCCACCCACAATTGGAGAAACGTTGACGGCTGCTTCAGAGCGGTTGGTGACGGATAAAGTTGTTAC
TCAGGCAGACGCACAGCGAGTGAAGAGAGTGGAAAGCAGGAATGACCCGTTTGGCAGGCTGCAAGAAGGCGGAATAGGAGAGACCATGCAAGTTGCAGCGGATTTCAATGAATCCCAGGGGTTCAAGGGGAATCCTTAAGTCTGGATAGCTGTTTATATATCTGTATCTTTGCCTCTGAGGGATTTCACGCTGGAAGTGA
AGATTTTGTCGACACAATAGATAGTAGGTAGTTTACGAAATTAGTCTGAAAGTGAAATAATGGAAGCAGGTTAAGGGATCTTAGGGTTTTGGGTTTAGGTTGTTTTAAATTGTCACCGTCTATGTTTATATTGTGACTTATATACCGTTTATTTTGTGGCTTGATTATACGGTATAGTATATAATAAAGAGG
>TRINITY_DN111473_c0_g1_i2 from sample A1 / Example unspliced isoform:TTCAATTCAATTCCTTGCCATTCACACCCTCCTTCCACAAATCTTCAATCAATTCAATTCAATTCCTTGCCATTCTCAGTATTTTCATTTAGATTTCATGCGAAATCAGCTAGTAATCATGGTTTCTTCTTCGCTTTCTAGTTTATTAACTCGCGTTTCTGCGGGTTGCCTGAAGAATGCTTCAATATATACACAAGCGC
GCACAGGCATCGTCGACACCGTCTCGCAAGAACAAAGGCTTTTCAAACGTGAATACATTGCAGGAAATCCTCTGCCTGGCACCTCCTCTAGAATTATAATAGAGGCCGAATTCGATGACAAGCCGGAGGCTCGAGAATTCGGGATGCCGCCAACCGAACCTGCAACAGTTGGAGAGgtgaatttaatattaagatttagg
tcatagaatactaaactgtaaactcaatttcaataatatttacgggttttgcagGTGTTTGAAGCGGTGGCAGACAACATCCCTGGGAAGCCTGTGGAGCAGAGCGATATAAGTGCTGCCCAAAGCGCAGAGGGTCGGATGATGGGGCAGCAGGTCCCGGGAGAACCTGCTTCTACCATGCAGTCGGCTTTGAATAATTC
TCAAGTATTGGATCCACCCACAATTGGAGAAACGTTGACGGCTGCTTCAGAGCGGTTGGTGACGGATAAAGTTGTTACTCAGGCAGACGCACAGCGAGTGAAGAGAGTGGAAAGCAGGAATGACCCGTTTGGCAGGCTGCAAGAAGGCGGAATAGGAGAGACCATGCAAGTTGCAGCGGATTTCAATGAATCCCAGGGGT
TCAAGGGGAATCCTTAAGTCTGGATAGCTGTTTATATATCTGTATCTTTGCCTCTGAGGGATTTCACGCTGGAAGTGAAGATTTTGTCGACACAATAGATAGTAGGTAGTTTACGAAATTAGTCTGAAAGTGAAATAATGGAAGCAGGTTAAGGGATCTTAGGGTTTTGGGTTTAGGTTGTTTTAAATTGTCACCGTCTA
TGTTTATATTGTGACTTATATACCGTTTATTTTGTGGCTTGATTATACGGTATAGTATATAATAAAGAGG