sp|O22611|DRM1_PEA ----> Dormancy-associated protein 1

Intron 1 GTAACTATCT ... TTTGTTGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	87.16	7	70	25
A2	83.04	19	123	63
A3	78.57	12	57	31
A4	56.04	20	27	24
A5	73.98	16	49	42
A6	53.62	32	34	40
A7	79.75	8	32	31
A8	72.5	11	32	26
A9	71.84	29	73	75
A10	70	9	26	16

>TRINITY_DN46610_c0_g1_i17 from sample A10 / Example spliced isoform

ATCATGTTGGGTAAGATATGGGATGACACTCTTGGAGGTCCGCAGCCAGATAGTGGCCTCAACCGGCTTCGTAACAATTCCAATTTCAATATTAGCCACCGACCAGATAGTAACAGTGATATCTAATTATTGGATGTTGCAATCGCATGATGTTGACGAGATAGGAGAAGGGAGTGAAGGAAATGCTGTGAATGTGGATG
GAAAGCTATCTAAATTCAATATTCAACCCTCGTTATCCATGGAAAGCTCTACGAGTCCGCCATGCTCACCAACTGCAGCCTCTTCACCTTCATCTACTCCACGAGATCGGGAGAACGTATGGAGAAGCGTGTTCAACCCAGGG

>TRINITY_DN46610_c0_g1_i8 from sample A10 / Example unspliced isoform:

TGAACTCCTCGAAGAAATGACTTGAAAAGGCTACTTGCAATTTTGCAATTTTGACTGGTTCGAAAACGACACTCAGTCTGAAAATTAGGTTGGAGTCACATAAAAGTTCCGCAATCATGTTGGGTAAGATATGGGATGACACTCTTGGAGGTCCGCAGCCAGATAGTGGCCTCAACCGGCTTCGTAACAATTCCAATTTC
AATATTAGCCACCGACCAGgtaactatctttaatttattattggttactagtatatttacatggataggtgtttatatgttaaaatttggggtggattactatctatgtttttactagaatgaataggtgtttataagttagaatttaggtggattaccatctatgtttttactagattaaagaagattgaagaaggatt
agacaaatgtattattgattgattttatagtggtagttcaaaattccaaataaactattataaaaatatatatatataaaataatgtgtatggataactcctaactcatgcatggataaggtagtcacaaacagtagctgaggcatagataacttgtgattacaactaagcatggagaaccagaatcagataacttgttc
ttgttcatggcacttgtaacctattgatgttcaccaaccacaaattaagtgatttatgctaattattatttttgttgtagATAGTAACAGTGATATCTAATTATTGGATGTTGCAATCGCATGATGTTGACGAGACAGGAGAAGGGAGTGAAGGAAATGCTGTGAATGTGGATGGAAAGCTATCTAAATTCAATATTCAA
CCCTCGTTATCCATGGAAAGCTCTACGAGTCCGCCATGCTCACCAACTGCAGCCTCTTCACCTTCATCTACTCCACGAGATCGGGAGAACGTATGGAGAAGCGTGTTCAACCCAGGGAGTAACCCCAACACCAACTCAATTGGATCTCAAAGATTCGACAAAGTAGAACCGAACAGTCCTACTGTTTATGACTGGCTTTA
CAGTGAAGACACGAAATCGAAAAGGGGCTGAGAACATTTTTCTGGAGGGATGTTACAAGTCCAAACAGTAATGTACAGTGTTCGAATGTGTTTCTGAGGATATAATTCCTTTTAGTGTGGATTGTAATTACCAAGTAGTTGTATTGTGTGATAAGAGGTGTAACCCATGAAGTCGGATGTTGAACTATCGTACACTGTCC
AATTGAAGGGTATGAACATTTCAATTTGGTTCATATTTCAATTTGGCTTTCACAATATTCCATATAAGGAATTAAGAAGGTGATATAGCAGTGGTTTTATAATTTTTGTTTTGTAGAGGGGAGCAACATGCAAAAATTCTCAAATTGCAATGTCTGAATGCTTAACTAATACTTGTAATATCCAATATCTAGTGAATGTA
TTTAGGGCTTCCCTAAACCATGTATTGAAGACTCTTTCAGGATCTGATTGTATGAAATAGTGTATATATAATTTTTTGGTTTAATTTATAATGGCTATAAAGATTTTGTAAGGGCC

Intron 2 GTAACTATCT ... GACGAGACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	40.86	89	70	53
A2	46.88	136	123	117
A3	42.39	70	57	46
A4	38.98	54	27	42
A5	36.52	93	49	58
A6	29	142	34	82
A7	31.63	107	32	67
A8	30.99	98	32	56
A9	36.45	177	73	130
A10	30	77	26	40

>TRINITY_DN46610_c0_g1_i4 from sample A10 / Example spliced isoform

TGAACTCCTCGAAGAAATGACTTGAAAAGGCTACTTGCAATTTTGCAATTTTGACTGGTTCGAAAACGACACTCAGTCTGAAAATTAGGTTGGAGTCACATAAAAGTTCCGCAATCATGTTGGGTAAGATATGGGATGACACTCTTGGAGGTCCGCAGCCAGATAGTGGCCTCAACCGGCTTCGTAACAATTCCAATTTC
AATATTAGCCACCGACCAGGAGAAGGGAGTGAAGGAAATGCTGTGAATGTGGATGGAAAGCTATCTAAATTCAATATTCAACCCTCGTTATCCATGGAAAGCTCTACGAGTCCGCCATGCTCACCAACTGCAGCCTCTTCACCTTCATCTACTCCACGAGATCGGGAGAACGTATGGAGAAGCGTGTTCAACCCAGGGAG
TAACCCCAACACCAACTCAATTGGATCTCAAAGATTCGACAAAGTAGAACCGAACAGTCCTACTGTTTATGACTGGCTTTACAGTGAAGACACGAAATCGAAAAGGGGCTGAGAACATTTTTCTGGAGGGATGTTACAAGTCCAAACAGTAATGTACAGTGTTCGAATGTGTTTCTGAGGATATAATTCCTTTTAGTGTG
GATTGTAATTACCAAGTAGTTGTATTGTGTGATAAGAGGTGTAACCCATGAAGTCGGATGTTGAACTATCGTACACTGTCCAATTGAAGGGTATGAACATTTCAATTTGGTTCATATTTCAATTTGGCTTTCACAATATTCCATATAAGGAATTAAGAAGGTGATATAGCAGTGGTTTTATAATTTTTGTTTTGTAGAGG
GGAGCAACATGCAAAAATTCTCAAATTGCAATGTCTGAATGCTTAACTAATACTTGTAATATCCAATATCTAGTGAATGTATTTAGGGCTTCCCTAAACCATGTATTGAAGACTCTTTCAGGATCTGATTGTATGAAATAGTGTATATATAATTTTTTGGTTTAATTTATAATGGCTATAAAGATTTTGTAAGGGCC

>TRINITY_DN46610_c0_g1_i8 from sample A10 / Example unspliced isoform:

TGAACTCCTCGAAGAAATGACTTGAAAAGGCTACTTGCAATTTTGCAATTTTGACTGGTTCGAAAACGACACTCAGTCTGAAAATTAGGTTGGAGTCACATAAAAGTTCCGCAATCATGTTGGGTAAGATATGGGATGACACTCTTGGAGGTCCGCAGCCAGATAGTGGCCTCAACCGGCTTCGTAACAATTCCAATTTC
AATATTAGCCACCGACCAGgtaactatctttaatttattattggttactagtatatttacatggataggtgtttatatgttaaaatttggggtggattactatctatgtttttactagaatgaataggtgtttataagttagaatttaggtggattaccatctatgtttttactagattaaagaagattgaagaaggatt
agacaaatgtattattgattgattttatagtggtagttcaaaattccaaataaactattataaaaatatatatatataaaataatgtgtatggataactcctaactcatgcatggataaggtagtcacaaacagtagctgaggcatagataacttgtgattacaactaagcatggagaaccagaatcagataacttgttc
ttgttcatggcacttgtaacctattgatgttcaccaaccacaaattaagtgatttatgctaattattatttttgttgtagatagtaacagtgatatctaattattggatgttgcaatcgcatgatgttgacgagacagGAGAAGGGAGTGAAGGAAATGCTGTGAATGTGGATGGAAAGCTATCTAAATTCAATATTCAA
CCCTCGTTATCCATGGAAAGCTCTACGAGTCCGCCATGCTCACCAACTGCAGCCTCTTCACCTTCATCTACTCCACGAGATCGGGAGAACGTATGGAGAAGCGTGTTCAACCCAGGGAGTAACCCCAACACCAACTCAATTGGATCTCAAAGATTCGACAAAGTAGAACCGAACAGTCCTACTGTTTATGACTGGCTTTA
CAGTGAAGACACGAAATCGAAAAGGGGCTGAGAACATTTTTCTGGAGGGATGTTACAAGTCCAAACAGTAATGTACAGTGTTCGAATGTGTTTCTGAGGATATAATTCCTTTTAGTGTGGATTGTAATTACCAAGTAGTTGTATTGTGTGATAAGAGGTGTAACCCATGAAGTCGGATGTTGAACTATCGTACACTGTCC
AATTGAAGGGTATGAACATTTCAATTTGGTTCATATTTCAATTTGGCTTTCACAATATTCCATATAAGGAATTAAGAAGGTGATATAGCAGTGGTTTTATAATTTTTGTTTTGTAGAGGGGAGCAACATGCAAAAATTCTCAAATTGCAATGTCTGAATGCTTAACTAATACTTGTAATATCCAATATCTAGTGAATGTA
TTTAGGGCTTCCCTAAACCATGTATTGAAGACTCTTTCAGGATCTGATTGTATGAAATAGTGTATATATAATTTTTTGGTTTAATTTATAATGGCTATAAAGATTTTGTAAGGGCC

Intron 3 GTAACGATCT ... GACGAGACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	37.18	49	40	18
A2	31.87	62	41	17
A3	35.06	25	18	9
A4	44.44	15	18	6
A5	38.27	25	18	13
A6	22.14	211	78	42
A7	29.12	64.5	30	23
A8	21.65	38	12	9
A9	25.73	153	70	36
A10	23.77	85	34	19

>TRINITY_DN46610_c0_g1_i7 from sample A10 / Example spliced isoform

AAAGGCTGCTTGCAATTTTGACTGGTTCAAAAACAAGACTCAGCGACTGAAAATTAGCTTGGAGTCACTAAAAAGTTGAGCGATCATGTTGGGTAAGATATGGGATGACACTCTTGGAGGTCCGCAGCCAGACAGCGGCCTCAGAAGGCTTCGCAACAATTCCACTTTCAACGCTGGCCACGGAGCAAGCCGAGAAGGGA
GTCAGGGAAATGCTGTGAATGGAAAGCCCTCTAAATTCAATATTCAACGCTCGCTATCCATGGAAATCTCTACTAGTCCGCCATCTTCACCAACTGCAGTCACTTCCCCTTCATCTACTCCGCGAGATCGTGAGAACATATGGAGAAGCGTGTTCGACCCAGGCAGTAACATCAATACCAAGTCTATTGGATCTGAAAAA
TTCGACAAAGCAGAACCAAACAGTCCTACTGTCTATGACTGGTTTTACAGTGGAGACACGAAATCGAAATGGCGCTGAGACCATTTTTACCTGGATGAATGGTACAACTCCAAACAATAATGTACAATGCTGGCGTGTGTTTCTGAGGATAGATTTGCTTTAGTGTGGGATTGTAATTACCAAGTATTTGCAGTATGTGA
TAAGAAGTGTAATCCATGAAGTCGGACGTTGAAATATCATACACTATCCTTTGTATTTTGGTGCTATGTACATATGAATATGAACATTACAATTTGTTTCCACAATATTCCATACAGGGAGTC

>TRINITY_DN46610_c0_g1_i10 from sample A10 / Example unspliced isoform:

AAAGGCTGCTTGCAATTTTGACTGGTTCAAAAACAAGACTCAGCGACTGAAAATTAGCTTGGAGTCACTAAAAAGTTGAGCGATCATGTTGGGTAAGATATGGGATGACACTCTTGGAGGTCCGCAGCCAGACAGCGGCCTCAGAAGGCTTCGCAACAATTCCACTTTCAACGCTGGCCACGGAGCAAgtaacgatcttt
gatcattgaaatttgaaactatttaatatcaatattattagttactagtattgttgtttttgttgttcgtcgcagtagcaagcaatacatagttattgggtgttgtaatcacatgatgatgatgttgacgagacagGCCGAGAAGGGAGTCAGGGAAATGCTGTGAATGGAAAGCCCTCTAAATTCAATATTCAACGCTC
GCTATCCATGGAAATCTCTACGAGTCCGCCATCTTCACCAACTGCAGTCACTTCCCCTTCATGTGAGTCGTTCCCAACTGAACGTTTTGA

Intron 4 GTATCATTTA ... TTCTAAGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	29.52	191	93	67
A2	27.55	192	77	69
A3	22.22	182	59	45
A4	26.32	140	63	37
A5	27.96	134	61	43
A6	8.99	1199	146	91
A7	10.16	548	75	49
A8	12.47	572	87	76
A9	14.53	750	140	115
A10	12.25	401	85	27

>TRINITY_DN46610_c0_g1_i8 from sample A10 / Example spliced isoform

TGAACTCCTCGAAGAAATGACTTGAAAAGGCTACTTGCAATTTTGCAATTTTGACTGGTTCGAAAACGACACTCAGTCTGAAAATTAGGTTGGAGTCACATAAAAGTTCCGCAATCATGTTGGGTAAGATATGGGATGACACTCTTGGAGGTCCGCAGCCAGATAGTGGCCTCAACCGGCTTCGTAACAATTCCAATTTC
AATATTAGCCACCGACCAGGTAACTATCTTTAATTTATTATTGGTTACTAGTATATTTACATGGATAGGTGTTTATATGTTAAAATTTGGGGTGGATTACTATCTATGTTTTTACTAGAATGAATAGGTGTTTATAAGTTAGAATTTAGGTGGATTACCATCTATGTTTTTACTAGATTAAAGAAGATTGAAGAAGGATT
AGACAAATGTATTATTGATTGATTTTATAGTGGTAGTTCAAAATTCCAAATAAACTATTATAAAAATATATATATATAAAATAATGTGTATGGATAACTCCTAACTCATGCATGGATAAGGTAGTCACAAACAGTAGCTGAGGCATAGATAACTTGTGATTACAACTAAGCATGGAGAACCAGAATCAGATAACTTGTTC
TTGTTCATGGCACTTGTAACCTATTGATGTTCACCAACCACAAATTAAGTGATTTATGCTAATTATTATTTTTGTTGTAGATAGTAACAGTGATATCTAATTATTGGATGTTGCAATCGCATGATGTTGACGAGACAGGAGAAGGGAGTGAAGGAAATGCTGTGAATGTGGATGGAAAGCTATCTAAATTCAATATTCAA
CCCTCGTTATCCATGGAAAGCTCTACGAGTCCGCCATGCTCACCAACTGCAGCCTCTTCACCTTCATCTACTCCACGAGATCGGGAGAACGTATGGAGAAGCGTGTTCAACCCAGGGAGTAACCCCAACACCAACTCAATTGGATCTCAAAGATTCGACAAAGTAGAACCGAACAGTCCTACTGTTTATGACTGGCTTTA

CAGTGAAGACACGAAATCGAAAAGGGGCTGAGAACATTTTTCTGGAGGGATGTTACAAGTCCAAACAGTAATGTACAGTGTTCGAATGTGTTTCTGAGGATATAATTCCTTTTAGTGTGGATTGTAATTACCAAGTAGTTGTATTGTGTGATAAGAGGTGTAACCCATGAAGTCGGATGTTGAACTATCGTACACTGTCC
AATTGAAGGGTATGAACATTTCAATTTGGTTCATATTTCAATTTGGCTTTCACAATATTCCATATAAGGAATTAAGAAGGTGATATAGCAGTGGTTTTATAATTTTTGTTTTGTAGAGGGGAGCAACATGCAAAAATTCTCAAATTGCAATGTCTGAATGCTTAACTAATACTTGTAATATCCAATATCTAGTGAATGTA
TTTAGGGCTTCCCTAAACCATGTATTGAAGACTCTTTCAGGATCTGATTGTATGAAATAGTGTATATATAATTTTTTGGTTTAATTTATAATGGCTATAAAGATTTTGTAAGGGCC

>TRINITY_DN46610_c0_g1_i1 from sample A10 / Example unspliced isoform:

TCTTCACCAACTGCAGCCTCTTCTCCTTCATCTACTCCGCGAGATCAGGAGAACGTATGGAGAAGCGTGTTCAACCCAGGGAGTAACCCCAACACCAACTCAATTGGATCTCAAAGATTCGACAAAGTAGAACCGAACAGTCCTACTGTTTATGACTGgtatcatttactcctctcctactccattaaacaagttgcttt
tgtacagtttgactgagacacgcagttaagaataagtgtgttttttttatttttaaagtgagttcgattgtaaagaagtaaggttttttacagttctgtaaactaacaaaccaaatccatgtaccatattggggtctcctaacccaaaatgtacaaaattacaagtcaatttgaagtcattattaccctatttttacttt
gttgttggtaccattaaatccttctgtccctgtttttgggatggcaacttctaagcagGCTTTACAGTGAAGACACGAAATCGAAAAGGGGCTGAGAACATTTTTCTGGAGGGATGTTACAAGTCCAAACAGTAATGTACAGTGTTCGAATGTGTTTCTGAGGATATAATTCCTTTTAGTGTGGATTGTAATTACCAAGT
AGTTGTATTGTGTGATAAGAGGTGTAACCCATGAAGTCGGATGTTGAACTATCGTACACTGTCCAATTGAAGGGTATGAACATTTCAATTTGGTTCATATTTCAATTTGGCTTTCACAATATTCCATATAAGGAATTAAGAAGGTGATATAGCAGTGGTTTTATAATTTTTGTTTTGTAGAGGGGAGCAACATGCAAAAA
TTCTCAAATTGCAATGTCTGAATGCTTAACTAATACTTGTAATATCCAATATCTAGTGAATGTATTTAGGGCTTCCCTAAACCATGTATTGAAGACTCTTTCAGGATCTGATTGTATGAAATAGTGTATATATAATTTTTTGGTTTAATTTATAATGGCTATAAAGATTTTGTAAGGGCC

Intron 5 GTATATTCTA ... TTGCAAGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	29.98	218	93	69
A2	28.25	214.3	84	70
A3	24.41	236.7	76	44
A4	26.31	172.3	61	28
A5	26.8	163	59	44
A6	25.18	2146.3	706	125
A7	26.87	1059.7	378	59
A8	27.59	1088.3	405	65
A9	26.14	1268.3	441	95
A10	25.57	848	284	34

>TRINITY_DN106215_c0_g2_i1 from sample A5 / Example spliced isoform

TTTATTTGCCGTGACAGACACTCTTATCTATGACTGTCACCCTATCATCTTTCTCTGTAATTAAATCAATATTGAATTCCTCTCCTTCACCGACCTATAGCCCTATATACTGATTCAATGAACCACTAGAACAAATGAATAGAAAAGGTTGCTTGCAATTTATACTGCTTCGAAATCGAGACCGACACTGAAAATTAGGT
TGGAGTCGCAGAAAAGTTGAGCGATCATGTTGGGTAAGATATGGGATGACACTCTTGGAGGTCCGCAGCCGGACAGCGGCCTCAACAGGCTTCGCAACAATTCCAATTTCAACACTGGCCTCGGAGCTGGTAACTATCTCTGATCTATTACCAGTTACTATTATGTTTCTTGTTTTTGTTGTTCGTAGCAGTAACAAGCA
ATATCTAATTATTGGATGTTGTAAATTTGTAATCACATAATTTTTGACGAGATGAGTGTAGCAGAAGCTAGTGACGAAAATGGTGTAAATGGAAAGCTGTCTAAATTCTATAATCAACGCTCTCTCTCCTTGGAAAGCTCTACGAGTCCGCCATGCTCACCAACTGCAGCCTCTTCACCTTCATGTGAGTCAGTCCCCGA
GTGAAAGTTTTGACCTACTTTTCTCTGCCTGTGTAGCATTCATATGCATCCATGCATGAATTACCTTTTGTGAAGTTTGGTTCATTAATGTATGGAAATCAGATGAAATCATAAATGGTGTATGAATGAATTGTACAGCTACTCCACGAGATCGGGAGAACGTATGGAGAAGCGTGTTCAACCCAGGGAGTAACCTTAAT
ACCAAGAAAATTGGATCTCAAAAATTCGACCAAGTAGAACCGAACAGTCCTACTGTTTATGACTGGCTTTACAGTGGAGACACAAAATCGAAAAGGGGCTGAGAACATTTTTCTGGATGGATGTTACAAGTCCAGACATTAATGCATAGTGTTGGCTTGGGTTTTCTGAGGCTATAATTGCTTTCACTGTGGGATTGTAA
TTACCAAGTAGTTGTAGTATGTAATGAGGTGTAACCCTTGAAGTCGGACTTTGAACTGTCGTGTCCAAGTGGAAGGGAGGAATGATGGTAGCTATGATCTTTCTCACGATTCCACTTCATATTTTGGTGCTATGTACTTGAACGTTTCAATTTGGTTCATATGTACATTTCAATTTGGCTTTCACAATATTGCATGTAAG
GAATTAAGAAACTGATATAGCAGTGATTTTGTATTTTCTGTTTTATGGACGGGAGCAGTATGCAAAAATTCTCAAATTTCCA

>TRINITY_DN106215_c0_g2_i9 from sample A5 / Example unspliced isoform:

TTTATTTGCCGTGACAGACACTCTTATCTATGACTGTCACCCTATCATCTTTCTCTGTAATTAAATCAATATTGAATTCCTCTCCTTCACCGACCTATAGCCCTATATACTGATTCAATGAACCACTAGAACAAATGAATAGAAAAGGTTGCTTGCAATTTATACTGCTTCGAAATCGAGACCGACACTGAAAATTAGGT
TGGAGTCGCAGAAAAGTTGAGCGATCATGTTGGGTAAGATATGGGATGACACTCTTGGAGGTCCGCAGCCGGACAGCGGCCTCAACAGGCTTCGCAACAATTCCAATTTCAACACTGGCCTCGGAGCTGAAGCTAGTGACGAAAATGGTGTAAATGGAAAGCTGTCTAAATTCTATAATCAACGCTCTCTCTCCTTGGAA
AGCTCTACGAGTCCGCCATGCTCACCAACTGCAGCCTCTTCACCTTCATCTACTCCACGAGATCGGGAGAACGTATGGAGAAGCGTGTTCAACCCAGGGAGTAACCTTAATACCAAGAAAATTGGATCTCAAAAATTCGACCAAGTAGAACCGAACAGTCCTACTGTTTATGACTGgtatattctactcctatcccactc
cattaacaagttgcttcttgtacagtttgactgaaactagcttttgtttatttatttatttttatagctaaaggtcagttcgattttaaagaagcaagggtttttacatttctgtaaactaagaaatctcccaacccaaaaatacaagatcacaagtcaatttgaagtcattattaccctatttttgctttgttgttgct
accattaaatccttctgtccctgtttttgggatggcaacttgcaagcagGCTTTACAGTGGAGACACAAAATCGAAAAGGGGCTGAGAACATTTTTCTGGATGGATGTTACAAGTCCAGACATTAATGCATAGTGTTGGCTTGGGTTTTCTGAGGCTATAATTGCTTTCACTGTGGGATTGTAATTACCAAGTAGTTGTA
GTATGTAATGAGGTGTAACCCTTGAAGTCGGACTTTGAACTGTCGTGTCCAAGTGGAAGGGAGGAATGATGGTAGCTATGATCTTTCTCACGATTCCACTTCATATTTTGGTGCTATGTACTTGAACGTTTCAATTTGGTTCATATGTACATTTCAATTTGGCTTTCACAATATTGCATGTAAGGAATTAAGAAACTGAT
ATAGCAGTGATTTTGTATTTTCTGTTTTATGGACGGGAGCAGTATGCAAAAATTCTCAAATTTCCA

Intron 6 GTGAGTCAGT ... AATTGTACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	13.83	332.3	40	52.9
A2	15.21	446	47	79.1
A3	10.32	390.6	30	43.6
A4	14.26	258.6	27	42.4
A5	14.46	222.3	26.9	37.4
A6	7.82	3105.1	58	260
A7	8.18	1673.1	41	145.4
A8	8.46	1579.7	28.3	141.3
A9	9.24	1861.6	55	186.1
A10	8.12	1172.7	23	97.7

>TRINITY_DN112477_c0_g1_i3 from sample A3 / Example spliced isoform

CGGGAATAGAAAAGGTTGCTTGCAATTTATACTGCTTCGAAATCGAGACCGACACTGAAAATTAGGTTGGAGTCGCAGAAAAGTTGAGCGATCATGTTGGGTAAGATATGGGATGACACTCTTGGAGGTCCGCAGCCGGACAGCGGCCTCAACAGGCTTCGCAACAATTCCAATTTCAACACTGGCCTCGGAGCTGAAGC
TAGTGACGAAAATGGTGTAAATGGAAAGCTGTCTAAATTCTATAATCAACGCTCTCTCTCCTTGGAAAGCTCTACGAGTCCGCCATGCTCACCAACTGCAGCCTCTTCACCTTCATCTACTCCACGAGATCGGGAGAACGTATGGAGAAGCGTGTTCAACCCAGGGAGTAACCTTAATACCAAGAAAATTGGATCTCAAA
AATTCGACCAAGTAGAACCGAACAGCCCTACTGTTTATGACTGGCTCTACAGTGGAGAAACCAGA

>TRINITY_DN112477_c0_g1_i4 from sample A3 / Example unspliced isoform:

CGGGAATAGAAAAGGTTGCTTGCAATTTATACTGCTTCGAAATCGAGACCGACACTGAAAATTAGGTTGGAGTCGCAGAAAAGTTGAGCGATCATGTTGGGTAAGATATGGGATGACACTCTTGGAGGTCCGCAGCCGGACAGCGGCCTCAACAGGCTTCGCAACAATTCCAATTTCAACACTGGCCTCGGAGCTGCAGA
AGCTAGTGACGAAAATGGTGTAAATGGAAAGCTGTCTAAATTCTATAATCAACGCTCTCTCTCCTTGGAAAGCTCTACGAGTCCGCCATGCTCACCAACTGCAGCCTCTTCACCTTCATgtgagtcagtccccgagtgaaagttttgacctacttttctctgcctgtgtagcattcatatgcatccatgcatgaattacc
ttttgtgaagtttggttcattaatgtatggaaatcagatgaaatcataaatggtgtatgaatgaattgtacagCTACTCCACGAGATCGGGAGAACGTATGGAGAAGCGTGTTCAACCCAGGGAGTAACCTTAATACCAAGAAAATTGGATCTCAAAAATTCGACCAAGTAGAACCGAACAGCCCTACTGTTTATGACTG
GTAA

Intron 7 GTAACTATCT ... AGTGTAGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	34.71	122	79.7	50
A2	36.97	119.4	81.5	58.6
A3	28.91	117.7	61.7	34
A4	35.77	59	29.7	36
A5	44.63	46.1	44.1	30.2
A6	22.66	350.1	114.1	91
A7	28.58	160.4	65.4	63
A8	22.14	107.4	29.4	31.7
A9	25.69	240	101	65
A10	21.08	118.7	38.4	25

>TRINITY_DN112477_c0_g1_i3 from sample A3 / Example spliced isoform

CGGGAATAGAAAAGGTTGCTTGCAATTTATACTGCTTCGAAATCGAGACCGACACTGAAAATTAGGTTGGAGTCGCAGAAAAGTTGAGCGATCATGTTGGGTAAGATATGGGATGACACTCTTGGAGGTCCGCAGCCGGACAGCGGCCTCAACAGGCTTCGCAACAATTCCAATTTCAACACTGGCCTCGGAGCTGAAGC
TAGTGACGAAAATGGTGTAAATGGAAAGCTGTCTAAATTCTATAATCAACGCTCTCTCTCCTTGGAAAGCTCTACGAGTCCGCCATGCTCACCAACTGCAGCCTCTTCACCTTCATCTACTCCACGAGATCGGGAGAACGTATGGAGAAGCGTGTTCAACCCAGGGAGTAACCTTAATACCAAGAAAATTGGATCTCAAA
AATTCGACCAAGTAGAACCGAACAGCCCTACTGTTTATGACTGGCTCTACAGTGGAGAAACCAGA

>TRINITY_DN112477_c0_g1_i2 from sample A3 / Example unspliced isoform:

CGGGAATAGAAAAGGTTGCTTGCAATTTATACTGCTTCGAAATCGAGACCGACACTGAAAATTAGGTTGGAGTCGCAGAAAAGTTGAGCGATCATGTTGGGTAAGATATGGGATGACACTCTTGGAGGTCCGCAGCCGGACAGCGGCCTCAACAGGCTTCGCAACAATTCCAATTTCAACACTGGCCTCGGAGCTGgtaa
ctatctctgatctattaccagttactattatgtttcttgtttttgttgttcgtagcagtaacaagcaatatctaattattggatgttgtaaatttgtaatcacataatttttgacgagatgagtgtagcagAAGCTAGTGACGAAAATGGTGTAAATGGAAAGCTGTCTAAATTCTATAATCAACGCTCTCTCTCCTTGG
AAAGCTCTACGAGTCCGCCATGCTCACCAACTGCAGCCTCTTCACCTTCATCTACTCCACGAGATCGGGAGAACGTATGGAGAAGCGTGTTCAACCCAGGGAGTAACCTTAATACCAAGAAAATTGGATCTCAAAAATTCGACCAAGTAGAACCGAACAGCCCTACTGTTTATGACTGGCTCTACAGTGGAGAAACCAGA