sp|Q84MB2|TIF8_ARATH ----> Protein TIFY 8
Intron 1 GTGTGATTGG ... TTCTATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.86 | 2 | 1 | 2 |
| A2 | 0 | 1 | 0 | 0 |
| A3 | 100 | 0 | 4 | 0 |
| A4 | 14.29 | 3 | 0 | 1 |
| A5 | 33.33 | 3 | 0 | 3 |
| A6 | 24.32 | 14 | 5 | 4 |
| A7 | 29.03 | 11 | 3 | 6 |
| A8 | 13.33 | 13 | 1 | 3 |
| A9 | 21.43 | 11 | 2 | 4 |
| A10 | 20 | 2 | 0 | 1 |
>TRINITY_DN32907_c0_g1_i3 from sample A6 / Example spliced isoformGTTTAGGCCTCAGATTCCTCCCGAGGTACTAACAGACAAACTGATTGCAATATTTCATTTCATCAAAACGCACCTTGGACCACATTGGCAGTTTTATATGTTTTTAATTTCTAAAAGTAAACAAGTAGCTTGCGAATGCACAGAGAATTTGAGTTGATTTCGATACACTGTGTAAGGAAGAATGAGAGTCGGGCTACTCA
GATGCATTCTGCCATGACTTCTTCCATGATGACGGGCGAAGGGAAACCACTGTTTCATGATTTCTTGGGCATGAGTCCCAGTGAACCAAAACATACGGAGGGGATGGTAATGTCTTGTGTTTTGTCAAGGACACCTCCCCATAGTAGTAGAAGACATGAAGAGGAGGACCTTAACAGGGATTCATCTACAAGAACATCAT
CAATGACTAGTGAGCGGCATGAGGTAGCAATGGCATGTTCAACACCACCCCTTCTTAGCGGACCACTGACTTTGACAGTTGCTGGATGTTCAGAATCAGGATCAGAGAGGCTATCATGGGAAAACTGCACAGGGCATCTAGCACATAGTGACAAGAGTGCCTTTTGTAGACCAGAGGCTGATAGCAGGACATCAGGCAAA
AAGAGGGATTCCCCAATTTCAAATAGTAGTCACCTGTTGCAAGATCGGTTTCAAATGGTTGCAGATACATTGGAAAAGTCACGTGGATTTAAGATGTCTCGCTTGGGAATGAAGGATGACAAGAGAGGAAGGCAGAGTGATATTCAAATAGCTTTAGATGATTTTCATCTGCCCATGCAGCCCCCACGGCAAATGTCAAA
TTGCCTGACATCTATGCAACCATCAATGCACAAGCCTGATTTGATGACATTGAATAAATGGGAACGCCCTACTTTATTAAATAAAGCAGCATATATTCATTCCCATCCTAGTCAGTTCAGAGGGTATCCTGACAAGAATTGTTCTAATTCATCTGGGGATAACTCTACTGTGTTGTTGCCTCTTTCTAGGCCTGCGGCAG
ATGAAGGTTCTCGAACAGGAATACAAGTGCCTGGTCTAGCAAGTCTCATCTCTAATGTCCCAAGCTCAACTTCAGACAGAAGTACAACTGCTGCAGGAGTTCCAACAGGTGGTGCTAAATACTCATCTCGCAGTGCAGGGTCAGAGTCAACCATGCCGAAAAGCCATCAGATTGCTGCTTCTCCAAGTCGTCAGTTGACA
GTATTTTATGGTGGACAGGCTCACGTTTTTGATGATGTTCCTCCTATCAAGGCAGATGCCATTATGGCTCTAGCTGGATCAAATGGGCGGTCATGGTCAACTACTTATTCTCCCCGGCGTAGGCAGTCTGAGTGTGATGTTTCTGTCCCAGCACTCGAGAGAGAAAAGAGTGAAAAGAACGATACGAGGAGTGTAAGAAT
GGGCCCTTGATGGCCACATCTTTTGGGCCAATGGCAGCAAGAAAATGGCTGTCTTCAAGGTTGAACGGATTTATCCCATTCGGACCTTGAAAAGGTAATGTTTGATACATTGTTCTGATATATATTTTAGAGGGAATTATATTGTAATGTTTGAACTGTCAGAAAAAGGTCTCCTGATTAGGTGATATTTAGTTTTATGT
GACAATATCTCTGTCCATTTATTCAGGGTTGTTTTTTCTGTCTATGTTTTCACAATTTTTAATAGGTTGGATGCTTATTAATGGGAAAGAATTATTATTCTTTCTGAATTTATATTAGCAAGCGTTCTATGGTTTTGGCCGG
>TRINITY_DN32907_c0_g1_i2 from sample A6 / Example unspliced isoform:GTTTAGGCCTCAGATTCCTCCCGAGGTACTAACAGACAAACTGATTGCAATATTTCATTTCATCAAAACGCACCTTGGACCACATTGGCAGTTTTATATGTTTTTAATTTCTAAAAGTAAACAAGTAGCTTGCGAATGCACAGAGAATTTGAGTTGATTTCGATACACTGTGTAAGGAAGGGTAATTGATTCGATTCAGA
ATGAGAGTCGGGCTACTCAGATGCATTCTGCCATGACTTCTTCCATGATGACGGGCGAAGGGAAACCACTGTTTCATGATTTCTTGGGCATGAGTCCCAGTGAACCAAAACATACGGAGGGGATGGTAATGTCTTGTGTTTTGTCAAGGACACCTCCCCATAGTAGTAGAAGACATGAAGAGGAGGACCTTAACAGGGAT
TCATCTACAAGAACATCATCAATGACTAGTGAGCGGCATGAGGTAGCAATGGCATGTTCAACACCACCCCTTCTTAGCGGACCACTGACTTTGACAGTTGCTGGATGTTCAGAATCAGGATCAGAGAGGCTATCATGGGAAAACTGCACAGGGCATCTAGCACATAGTGACAAGAGTGCCTTTTGTAGACCAGAGGCTGA
TAGCAGGACATCAGGCAAAAAGAGGGATTCCCCAATTTCAAATAGTAGTCACCTGTTGCAAGATCGGTTTCAAATGGTTGCAGATACATTGGAAAAGTCACGTGGATTTAAGATGTCTCGCTTGGGAATGAAGGATGACAAGAGAGGAAGGCAGAGTGATATTCAAATAGCTTTAGATGATTTTCATCTGCCCATGCAGC
CCCCACGGCAAATGTCAAATTGCCTGACATCTATGCAACCATCAATGCACAAGCCTGATTTGATGACATTGAATAAATGGGAACGCCCTACTTTATTAAATAAAGCAGCATATATTCATTCCCATCCTAGTCAGTTCAGAGGGTATCCTGACAAGAATTGTTCTAATTCATCTGGGGATAACTCTACTGTGTTGTTGCCT
CTTTCTAGGCCTGCGGCAGATGAAGGTTCTCGAACAGGAATACAAGTGCCTGGTCTAGCAAGTCTCATCTCTAATGTCCCAAGCTCAACTTCAGACAGAAGTACAACTGCTGCAGGAGTTCCAACAGGTGGTGCTAAATACTCATCTCGCAGTGCAGGGTCAGAGTCAACCATGCCGAAAAGCCATCAGATTGCTGCTTC
TCCAAGTCGTCAGTTGACAGTATTTTATGGTGGACAGGCTCACGTTTTTGATGATGTTCCTCCTATCAAGGCAGATGCCATTATGGCTCTAGCTGGATCAAATGGGCGGTCATGGTCAACTACTTATTCTCCCCGGCGTAGGCAGTCTGAGTGTGATGTTTCTGTCCCAGCACTCGAGAGAGAAAAGAGTGAAAAGAACG
ATACGAGGAGTGTAAGAATGGGCCCTTGATGGCCACATCTTTTGGGCCAATGGCAGCAAGAAAATGgtgtgattggtttgtttaaattttctcattaatatttttttccttgattttaatctgctttgcatatctgaatgaaggattttctatgtagGCTGTCTTCAAGGTTGAACGGATTTATCCCATTCGGACCTTGA
AAAGGTAATGTTTGATACATTGTTCTGATATATATTTTAGAGGGAATTATATTGTAATGTTTGAACTGTCAGAAAAAGGTCTCCTGATTAGGTGATATTTAGTTTTATGTGACAATATCTCTGTCCATTTATTCAGGGTTGTTTTTTCTGTCTATGTTTTCACAATTTTTAATAGGTTGGATGCTTATTAATGGGAAAGA
ATTATTATTCTTTCTGAATTTATATTAGCAAGCGTTCTATGGTTTTGGCCGG
Intron 2 GTACTAACAG ... TGTAAGGAAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 2 | 1 | 3 |
| A2 | 100 | 0 | 2 | 0 |
| A3 | 100 | 0 | 0 | 3 |
| A4 | 100 | 0 | 3 | 6 |
| A5 | 0 | 2 | 0 | 0 |
| A6 | 100 | 0 | 2 | 2 |
| A7 | 50 | 2 | 1 | 3 |
| A8 | 50 | 1 | 0 | 2 |
| A9 | 69.23 | 2 | 3 | 6 |
| A10 | -1 | 0 | 0 | 0 |
>TRINITY_DN33921_c0_g1_i1 from sample A9 / Example spliced isoformCAACGACAGCGGAGCAGAGCAGTTAGTCAAAAGTTTAAACAGCTCTGCTTCTTTCAATTGTACTGAGTGTTTAGGGTTTAGGCCTCAGATTCCTCCCGAGGGTAATTGATTCGATTCAGAATGAGAGTCGGGCTACTCAGATGCATTCTGCCATGACTTCTTCCATGATGACGGGCGAAGGGAAACCACTGTTTCATGAT
TTCTTGGGCATTAGTCCCAGTGAACCAAAACATACGGAGGGGATGGTAATGTCTTGTGTTTTGTCAAGGACACCTCCCCATAGTAGTAGAAGACATGAAGAGGAGGACCTTAACAGGGATTCATCTACAAGAACATCATCAATGACTAGTGAGCGGCATGAGGTAGCAATGGCATGTTCAACACCACCCCTTCTTAGCGG
ACCACTGACTTTGACAGTTGCTGGATGTTCAGAATCAGGATCAGAGAGGCTATCATGGGAAAACTGCACAGGGCATCTAGCACATAGTGACAAGAGTGCCTTTTGTAGACCAGAGGCTGATAGCAGGACATCAGGCAAAAAGAGGGATTCCCCAATTTCAAATAGTAGTCACCTGTTGCAAGATCGGTTTCAAATGGTTG
CAGATACATTGGAAAAGTCACGTGGATTTAAGATGTCTCGCTTGGGAATGAAGGATGACAAGAGAGGAAGGCAGAGTGATATTCAAATAGCTTTAGATGATTTTCATCTGCCCATGCAGCCCCCACGGCAAATGTCAAATTGCCTGACATCTATGCAACCATCAATGCACAAGCCTGATTTGATGACATTGAATAAATGG
GAACGCCCTACTTTATTAAATAAAGCAGCATATATTCATTCCCATCCTAGTCAGTTCAGAGGGTATCCTGACAAGAATTGTTCTAATTCATCTGGGGATAACTCTACTGTGTTGTTGCCTCTTTCTAGGCCTGCGGCAGATGAAGGTTCTCGAACAGGAATACAAGTGCCTGGTCTAGCAAGTCTCATCTCTAATGTCCC
AAGCTCAACTTCAGACAGAAGTACAACTGCTGCAGGAGTTCCAACAGGTGGTGCTAAATACTCATCTCGCAGTGCAGGGTCAGAGTCAACCATGCCGAAAAGCCATCAGATTGCTGCTTCTCCAAGTCGTCAGTTGACAGTATTTTATGGTGGACAGGCTCACGTTTTTGATGATGTTCCTCCTATCAAGGCAGATGCCA
TTATGGCTCTAGCTGGATCAAATGGGCGGTCATGGTCAACTACTTATTCTCCCCGGCGTAGGCAGTCTGAGTGTGATGTTTCTGTCCCAGCACTCGAGAGAGAAAAGAGTGAAAAGAACGATACGAGGAGTGTAAGAATGGGCCCTTGATGGCCACATCTTTTGGGCCAATGGCAGCAAGAAAATGGCTGTCTTCAAGGT
TGAACGGATTTATCCCATTCGGACCTTGAAAAGGTAATGTTTGATACATTGTTCTGATATATATTTTAGAGGGAATTATATTGTAATGTTTGAACTGTCAGAAAAAGGTCTCCTGATTAGGTGATATTTAGTTTTATGTGACAATATCTCTGTCCATTTATTCAGGGTTGTTTTTTCTGTCTATGTTTTCACAATTTTTA
ATAGGTTGGATGCTTATTAATGGGAAAGAATTATTATTCTTTCTGAATTTATATTAGCAAGCGTTCTATGGTTTTGGCCGGCCTTTGTTATCCTTCTTACGTTATTAGTAAGTTGTTCATATGATTAGAACAATAAATATTTGTACAAAATCTTGGGCTTGTAAATTTTGTAAAGAATAGCTTTTCTTTGGTG
>TRINITY_DN33921_c0_g1_i3 from sample A9 / Example unspliced isoform:CAACGACAGCGGAGCAGAGCAGTTAGTCAAAAGTTTAAACAGCTCTGCTTCTTTCAATTGTACTGAGTGTTTAGGGTTTAGGCCTCAGATTCCTCCCGAGgtactaacagacaaactgattgcaatatttcatttcatcaaaacgcaccttggaccacattggcagttttatatgtttttaatttctaaaagtaaacaag
tagcttgcgaatgcacagagaatttgagttgatttcgatacactgtgtaaggaagGGTAATTGATTCGATTCAGAATGAGAGTCGGGCTACTCAGATGCATTCTGCCATGACTTCTTCCATGATGACGGGCGAAGGGAAACCACTGTTTCATGATTTCTTGGGCATTAGTCCCAGTGAACCAAAACATACGGAGGGGATG
GTAATGTCTTGTGTTTTGTCAAGGACACCTCCCCATAGTAGTAGAAGACATGAAGAGGAGGACCTTAACAGGGATTCATCTACAAGAACATCATCAATGACTAGTGAGCGGCATGAGGTAGCAATGGCATGTTCAACACCACCCCTTCTTAGCGGACCACTGACTTTGACAGTTGCTGGATGTTCAGAATCAGGATCAGA
GAGGCTATCATGGGAAAACTGCACAGGGCATCTAGCACATAGTGACAAGAGTGCCTTTTGTAGACCAGAGGCTGATAGCAGGACATCAGGCAAAAAGAGGGATTCCCCAATTTCAAATAGTAGTCACCTGTTGCAAGATCGGTTTCAAATGGTTGCAGATACATTGGAAAAGTCACGTGGATTTAAGATGTCTCGCTTGG
GAATGAAGGATGACAAGAGAGGAAGGCAGAGTGATATTCAAATAGCTTTAGATGATTTTCATCTGCCCATGCAGCCCCCACGGCAAATGTCAAATTGCCTGACATCTATGCAACCATCAATGCACAAGCCTGATTTGATGACATTGAATAAATGGGAACGCCCTACTTTATTAAATAAAGCAGCATATATTCATTCCCAT
CCTAGTCAGTTCAGAGGGTATCCTGACAAGAATTGTTCTAATTCATCTGGGGATAACTCTACTGTGTTGTTGCCTCTTTCTAGGCCTGCGGCAGATGAAGGTTCTCGAACAGGAATACAAGTGCCTGGTCTAGCAAGTCTCATCTCTAATGTCCCAAGCTCAACTTCAGACAGAAGTACAACTGCTGCAGGAGTTCCAAC
AGGTGGTGCTAAATACTCATCTCGCAGTGCAGGGTCAGAGTCAACCATGCCGAAAAGCCATCAGATTGCTGCTTCTCCAAGTCGTCAGTTGACAGTATTTTATGGTGGACAGGCTCACGTTTTTGATGATGTTCCTCCTATCAAGGCAGATGCCATTATGGCTCTAGCTGGATCAAATGGGCGGTCATGGTCAACTACTT
ATTCTCCCCGGCGTAGGCAGTCTGAGTGTGATGTTTCTGTCCCAGCACTCGAGAGAGAAAAGAGTGAAAAGAACGATACGAGGAGTGTAAGAATGGGCCCTTGATGGCCACATCTTTTGGGCCAATGGCAGCAAGAAAATGGCTGTCTTCAAGGTTGAACGGATTTATCCCATTCGGACCTTGAAAAGGTAATGTTTGAT
ACATTGTTCTGATATATATTTTAGAGGGAATTATATTGTAATGTTTGAACTGTCAGAAAAAGGTCTCCTGATTAGGTGATATTTAGTTTTATGTGACAATATCTCTGTCCATTTATTCAGGGTTGTTTTTTCTGTCTATGTTTTCACAATTTTTAATAGGTTGGATGCTTATTAATGGGAAAGAATTATTATTCTTTCTG
AATTTATATTAGCAAGCGTTCTATGGTTTTGGCCGGCCTTTGTTATCCTTCTTACGTTATTAGTAAGTTGTTCATATGATTAGAACAATAAATATTTGTACAAAATCTTGGGCTTGTAAATTTTGTAAAGAATAGCTTTTCTTTGGTG