sp|Q9M0X5|CRK25_ARATH ----> Cysteine-rich receptor-like protein kinase 25
Intron 1 GTAGGTCATT ... ACAAATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 1 | 0 | 1 |
| A2 | 0 | 4 | 0 | 0 |
| A3 | 50 | 1 | 0 | 2 |
| A4 | 100 | 0 | 0 | 1 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 20 | 10 | 1 | 4 |
| A7 | 14.29 | 3 | 0 | 1 |
| A8 | 25 | 6 | 2 | 2 |
| A9 | 24.14 | 11 | 3 | 4 |
| A10 | 28 | 9 | 2 | 5 |
>TRINITY_DN37657_c0_g1_i3 from sample A8 / Example spliced isoformGCACCTCAAACAGGGTTCAACACTTCTTGGTATGGCCAAAGTCCCAACAGAATCTATGGCCTCCTCCAGTGCTCAGGTAACATATCTCAACACGACTGCTCAATCTGTTCACAGCGAGCAAACGATAAAATTCTACAACTTTGTAGAAACCGCGTAGGCGGTCTTTTATGGCTTGATAACTGCTTCCTGCGATACGAGAA
CTATAGCTTCTTTCTACAGCTAGACACCAATGGGACTTATTTGCAGAACGCAAATGAAATTAGTACAAGTAATCTATATAATTTCAGTACCATTACTTCAAATCTCCTTTTCAACCTGTCTGATGAGGCCTACAATTTTGCAAATAAGGGATTCGCTCAAGGTTCAGCTACATATTCTGCTAATGGCAATGTTTACGGTC
TAGTTCAATGCTGGAGAGATATATCCATCAAGGACTGCAGATCTTGTTTGCAAATAGCAACATCTTATCTCCTCAAATGTTGTGCTCTGATTGAAGGAGCCCAAGCCCTGTTGGGAAGCTGCAGGGTCCGATATGAAATATACCCCTTTTTTAACACTAGTACTGAAGGGAGTAGTACTAGTCCCCCATCCTCTGCCTCC
TCCGTGGCAAACCCTCAAACGAAAGCTACCCAGACTCCTCGAGCGAATGAAACTTCACCCACCATGTCAAAATTCTCCTCTTCAAAAGCATTAGTACCCATAATATTGGGGATTGTGGGAGGCATCGTTGTAGCGTTTATGGTATGTTTGTTTGCCATGCGGAGCAAACTGAAATCTGCTTTTTCACGGAGCCGAGTAAC
CCGTGCGCAGAATGAAGAAACATATGAAAATGATCAAGAATCCACGCTACTGAAGCAGGGGCAAATTCTCTTCACCTTAAAAGCACTCATAGAAGCAACGGATAATTTTGATGAAAACAAGAAACTTGGAGAGGGAGGGTTTGGAACTGTATACAAGGGAATAACCAGAGACGGAAAAGAAATAGCAGTGAAGAAGTTGT
CTGCACGATCTGGACAGGGAAAACGAGAATTTATGAATGAAGTGAAGCTTGTGGCCAATTTTCAACATCGAAATCTAGTAAAGCTGCTTGGTTGTTGTACCGAAGGACTAGAAAGGTTGCTTGTTTATGAGTATTTGCCAAACAAGAGTCTTGACATCTTCTTGTTTGATCGAGAGAAGAAGAGACATCTTGATTGGCAA
AAGCGCTATAACATCATACTGGGAATAGCTCGTGGTCTTCTTTATCTTCACGAGGATTCACAGTTGCGAATCATTCATCGAGACATTAAAGCAAACAACATTTTGCTTGAGGAGCGATTCAATCCTAAAATAGCAGACTTTGGGTTAGCAAGACTGTTTCCTGAAGACAAAACTCATATCCAAACAAGAGTTGCAGGGAC
ATACGGTTACATAGCGCCAGAGTATGCAATGCGGGGGCAACTATCGGTGAAAGCTGATGTCTATAGCTTTGGAGTGTTAATCCTTGAGATTGTGAGTGGAAGAAAAAGCAGTGATATGAAATTTCCCCAAGAAATGCAAAGCCTATTAGAATGGACATGGAGATTATACACGCAAGGGTGTCTTCTGGATATGATTGATT
CAACAGTAACCGAAACATGCCGACAGGAGGAAGCTGTAAGATGCATTCACGTTGCCCTTCTATGCACACAACCGGATTCAGGCATCCGTCCGGCTATGTCTAGTGTTATACTGATGATCTCCAGCTCTTCCGTAACATTACCAAATCCAACAACGCCAGCATTTGTGAAAAGTAGTGAGAGCAACCTGGGAGGATCCACA
GCCGGCAGCTATGGTAGTGGGATTCACAAGCCACGGTCGCTTGCCACGACATCATCTGTGTCGTCTGGCTCTACGCCTTTGGTTCCTTCTATAAATAATGTCACCGTCACTATCTTGGAAGATAGGTAGGCGGGTAATCCTCTTGGTTTACAGTTAAAAAAATAGGTTTTCGACGATATCAGAGACAAATAAATGTACTG
GGTTAAGAGATTGAAATCGTTTTCTTGAAGTTCTGGTTTATTGTAATAATTTTCGGTTTCTGGTAATCCAGCGGTTTCTTGAAGTTCTTCGATATCTTAAATTCAAAATTTTAGCAAGAATTTTGGCCTTGAAAATAGAATACGATGGAAC
>TRINITY_DN37657_c0_g1_i5 from sample A8 / Example unspliced isoform:GCACCTCAAACAGGGTTCAACACTTCTTGGTATGGCCAAAGTCCCAACAGAATCTATGGCCTCCTCCAGTGCTCAGGTAACATATCTCAACACGACTGCTCAATCTGTTCACAGCGAGCAAACGATAAAATTCTACAACTTTGTAGAAACCGCGTAGGCGGTCTTTTATGGCTTGATAACTGCTTCCTGCGATACGAGAA
CTATAGCTTCTTTCTACAGCTAGACACCAATGGGACTTATTTGCAGAACGCAAATGAAATTAGTACAAGTAATCTATATAATTTCAGTACCATTACTTCAAATCTCCTTTTCAACCTGTCTGATGAGGCCTACAATTTTGCAAATAAGGGATTCGCTCAAGGTTCAGCTACATATTCTGCTAATGGCAATGTTTACGGTC
TAGTTCAATGCTGGAGAGATATATCCATCAAGGACTGCAGATCTTGTTTGCAAATAGCAACATCTTATCTCCTCAAATGTTGTGCTCTGATTGAAGGAGCCCAAGCCCTGTTGGGAAGCTGCAGGGTCCGATATGAAATATACCCCTTTTTTAACACTAGTACTGAAGGGAGTAGTACTAGTCCCCCATCCTCTGCCTCC
TCCGTGGCAAACCCTCAAACGAAAGCTACCCAGACTCCTCGAGCGAATGAAACTTCACCCACCATGTCAAAATTCTCCTCTTCAAAAGCATTAGTACCCATAATATTGGGGATTGTGGGAGGCATCGTTGTAGCGTTTATGGTATGTTTGTTTGCCATGCGGAGCAAACTGAAATCTGCTTTTTCACGGAGCCGAGTAAC
CCGTGCGCAGAATGAAGAAACATATGAAAATGATCAAGAATCCACGCTACTGAAGCAGGGGCAAATTCTCTTCACCTTAAAAGCACTCATAGAAGCAACGGATAATTTTGATGAAAACAAGAAACTTGGAGAGGGAGGGTTTGGAACTGTATACAAGGGAATAACCAGAGACGGAAAAGAAATAGCAGTGAAGAAGTTGT
CTGCACGATCTGGACAGGGAAAACGAGAATTTATGAATGAAGTGAAGCTTGTGGCCAATTTTCAACATCGAAATCTAGTAAAGCTGCTTGGTTGTTGTACCGAAGGACTAGAAAGGTTGCTTGTTTATGAGTATTTGCCAAACAAGAGTCTTGACATCTTCTTGTTTGgtaggtcattttggacattttggttgaggaga
atatgataaatcttttcaagattgattatttaaaagttttcaaatctcgtatttttgaaatacaaatacagATCGAGAGAAGAAGAGACATCTTGATTGGCAAAAGCGCTATAACATCATACTGGGAATAGCTCGTGGTCTTCTTTATCTTCACGAGGATTCACAGTTGCGAATCATTCATCGAGACATTAAAGCAAACA
ACATTTTGCTTGAGGAGCGATTCAATCCTAAAATAGCAGACTTTGGGTTAGCAAGACTGTTTCCTGAAGACAAAACTCATATCCAAACAAGAGTTGCAGGGACATACGGTTACATAGCGCCAGAGTATGCAATGCGGGGGCAACTATCGGTGAAAGCTGATGTCTATAGCTTTGGAGTGTTAATCCTTGAGATTGTGAGT
GGAAGAAAAAGCAGTGATATGAAATTTCCCCAAGAAATGCAAAGCCTATTAGAATGGACATGGAGATTATACACGCAAGGGTGTCTTCTGGATATGATTGATTCAACAGTAACCGAAACATGCCGACAGGAGGAAGCTGTAAGATGCATTCACGTTGCCCTTCTATGCACACAACCGGATTCAGGCATCCGTCCGGCTAT
GTCTAGTGTTATACTGATGATCTCCAGCTCTTCCGTAACATTACCAAATCCAACAACGCCAGCATTTGTGAAAAGTAGTGAGAGCAACCTGGGAGGATCCACAGCCGGCAGCTATGGTAGTGGGATTCACAAGCCACGGTCGCTTGCCACGACATCATCTGTGTCGTCTGGCTCTACGCCTTTGGTTCCTTCTATAAATA
ATGTCACCGTCACTATCTTGGAAGATAGGTAGGCGGGTAATCCTCTTGGTTTACAGTTAAAAAAATAGGTTTTCGACGATATCAGAGACAAATAAATGTACTGGGTTAAGAGATTGAAATCGTTTTCTTGAAGTTCTGGTTTATTGTAATAATTTTCGGTTTCTGGTAATCCAGCGGTTTCTTGAAGTTCTTCGATATCT
TAAATTCAAAATTTTAGCAAGAATTTTGGCCTTGAAAATAGAATACGATGGAAC
Intron 2 GTATGTATCT ... ATTGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.77 | 9 | 6 | 2 |
| A2 | 27.27 | 8 | 6 | 0 |
| A3 | 50 | 2 | 4 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 33.33 | 3 | 0 | 3 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 29.41 | 12 | 1 | 9 |
| A8 | 33.33 | 7 | 2 | 5 |
| A9 | 31.25 | 11 | 1 | 9 |
| A10 | 15.79 | 8 | 1 | 2 |
>TRINITY_DN41410_c3_g1_i2 from sample A9 / Example spliced isoformCTTGACAAAGTAACACGCGGAAGTAGGAAAGGTGACAAAAAGCCCGCAGTGTAGACAGACCACCAGCACTGCAGACGGTTTCTGTGTTTGAAATGTTGCCTATACATTTTCAGATCACTGTCGTCAATAATTCAACCCTTCCCCATTCTCACCACTGTTTGCTGTGTCTCAATGATCTAATTCCACCAATGTTATAGCGC
CCTGCAACCCATATTCATCAGAATCATTGACAGAGCTTACCAGTTCGAACATCATGAGAAACTTCAATAAGTATATATTTTTATACTTTTCTGATTCCAGCAAACAAAAACTTATTCTAAGTCATTTGATCGGTTTACTATTCATTTATAGTTTTCCTTCAGCACAAATTGGCGCGTCTACATGCAATAATGCCTCTACT
TACGCGGATGGAAGTAAATTTTCGAGCAATTTGAATAGAGTAATGGGTGATCTAGTGAAGAACGCACCTCAAACAGGGTTCAACACTTCTTGGTATGGCCAAAGTCCCAACAGAATCTATGGCCTCCTCCAGTGCTCAGGTAACATATCTCAACACGACTGCTCAATCTGTTCACAGCGAGCAAACGATAAAATTCTACA
ACTTTGTAGAAACCGCGTAGGCGGTCTTTTATGGCTTGATAACTGCTTCCTGCGATACGAGAACTATAGCTTCTTTCTACAGCTAGACACCAATGGGACTTATTTGCAGAACGCAAATGAAATTAGTACAAGTAATCTATATAATTTCAGTACCATTACTTCAAATCTCCTTTTCAACCTGTCTGATGAGGCCTACAATT
TTGCAAATAAGGGATTCGCTCAAGGTTCAGCTACATATTCTGCTAATGGCAATGTTTACGGTCTAGTTCAATGCTGGAGAGATATATCCATCAAGGACTGCAGATCTTGTTTGCAAATAGCAACATCTTATCTCCTCAAATGTTGTGCTCTGATTGAAGGAGCCCAAGCCCTGTTGGGAAGCTGCAGGGTCCGATATGAA
ATATACCCCTTTTTTAACACTAGTACTGAAGGGAGTAGTACTAGTCCCCCATCCTCTGCCTCCTCCGTGGCAAACCCTCAAACGAAAGCTACCCAGACTCCTCGAGCGAATGAAACTTCACCCACCATGTCAAAATTCTCCTCTTCAAAAGCATTAGTACCCATAATATTGGGGATTGTGGGAGGCATCGTTGTAGCGTT
TATGGTATGTTTGTTTGCCATGCGGAGCAAACTGAAATCTGCTTTTTCACGGAGCCGAGTAACCCGTGCGCAGAATGAAGAAACATATGAAAATGATCAAGAATCCACGCTACTGAAGCAGGGGCAAATTCTCTTCACCTTAAAAGCACTCATAGAAGCAACGGATAATTTTGATGAAAACAAGAAACTTGGAGAGGGAG
GGTTTGGAACTGTATACAAGGGAATAACCAGAGACGGAAAAGAAATAGCAGTGAAGAAGTTGTCTGCACGATCTGGACAGGGAAAACGAGAATTTATGAATGAAGTGAAGCTTGTGGCCAATTTTCAACATCGAAATCTAGTAAAGCTGCTTGGTTGTTGTACCGAAGGACTAGAAAGGTTGCTTGTTTATGAGTATTTG
CCAAACAAGAGTCTTGACATCTTCTTGTTTGATCGAGAGAAGAAGAGACATCTTGATTGGCAAAAGCGCTATAACATCATACTGGGAATAGCTCGTGGTCTTCTTTATCTTCACGAGGATTCACAGTTGCGAATCATTCATCGAGACATTAAAGCAAACAACATTTTGCTTGAGGAGCGATTCAATCCTAAAATAGCAGA
CTTTGGGTTAGCAAGACTGTTTCCTGAAGACAAAACTCATATCCAAACAAGAGTTGCAGGGACATACGGTTACATAGCGCCAGAGTATGCAATGCGGGGGCAACTATCGGTGAAAGCTGATGTCTATAGCTTTGGAGTGTTAATCCTTGAGATTGTGAGTGGAAGAAAAAGCAGTGATATGAAATTTCCCCAAGAAATGC
AAAGCCTATTAGAATGGACATGGAGATTATACACGCAAGGGTGTCTTCTGGATATGATTGATTCAACAGTAACCGAAACATGCCGACAGGAGGAAGCTGTAAGATGCATTCACGTTGCACTTCTATGCACACAACCGGATTCAGGCATCCGTCCGGCTATGTCTAGTGTTATACTGATGATCTCCAGCTCTTCCGTAACA
TTACCAAATCCAACAACGCCAGCATTTGTGAAAAGTAGTGAGAGCAACCTGGGAGGATCCACAGCCGGCAGCTATGGTAGTGGGATTCACAAGCCACGGTCGCTTGCCACGACATCATCTGTGTCGTCTGGCTCTACGCCTTTGGTTCCTTCTATAAATAATGTCACCGTCACTATCTTGGAAGATAGGTAGGCGGGTAA
TCCTCTTGGTTTACAGTTAAAAAAATAGGTTTTCGACGATATCAGAGACAAATAAATGTACTGGGTTAAGAGATTGAAATCGTTTTCTTGAAGTTCTGGTTTATTGTAATAATTTTCGGTTTCTGGTAATCCAGCGGTTTCTTGAAGTTCTTCGATATCTTAAATTCAAAATTTTAGCAAGAATTTTGGCCTTGAAAATA
GAATACGATGG
>TRINITY_DN41410_c3_g1_i4 from sample A9 / Example unspliced isoform:CTTGACAAAGTAACACGCGGAAGTAGGAAAGGTGACAAAAAGCCCGCAGTGTAGACAGACCACCAGCACTGCAGACGGTTTCTGTGTTTGAAATGTTGCCTATACATTTTCAGATCACTGTCGTCAATAATTCAACCCTTCCCCATTCTCACCACTGTTTGCTGTGTCTCAATGATCTAATTCCACCAATGTTATAGCGC
CCTGCAACCCATATTCATCAGAATCATTGACAGAGCTTACCAGTTCGAACATCATGAGAAACTTCAATAAGTATATATTTTTATACTTTTCTGATTCCAGCAAACAAAAACTTATTCTAAGTCATTTGATCGGTTTACTATTCATTTATAGTTTTCCTTCAGCACAAATTGGCGCGTCTACATGCAATAATGCCTCTACT
TACGCGGATGGAAGTAAATTTTCGAGCAATTTGAATAGAGTAATGGGTGATCTAGTGAAGAACGCACCTCAAACAGGGTTCAACACTTCTTGGTATGGCCAAAGTCCCAACAGAATCTATGGCCTCCTCCAGTGCTCAGGTAACATATCTCAACACGACTGCTCAATCTGTTCACAGCGAGCAAACGATAAAATTCTACA
ACTTTGTAGAAACCGCGTAGGCGGTCTTTTATGGCTTGATAACTGCTTCCTGCGATACGAGAACTATAGCTTCTTTCTACAGCTAGACACCAATGGGACTTATTTGCAGAACGCAAATGAAATTAGTACAAGTAATCTATATAATTTCAGTACCATTACTTCAAATCTCCTTTTCAACCTGTCTGATGAGGCCTACAATT
TTGCAAATAAGGGATTCGCTCAAGGTTCAGCTACATATTCTGCTAATGGCAATGTTTACGGTCTAGTTCAATGCTGGAGAGATATATCCATCAAGGACTGCAGATCTTGTTTGCAAATAGCAACATCTTATCTCCTCAAATGTTGTGCTCTGATTGAAGGAGCCCAAGCCCTGTTGGGAAGCTGCAGGGTCCGATATGAA
ATATACCCCTTTTTTAACACTAGTACTGAAGGGAGTAGTACTAGTCCCCCATCCTCTGCCTCCTCCGTGGCAAACCCTCAAACGAAAGCTACCCAGACTCCTCGAGCGAATGAAACTTCACCCACCATGTCAAAATTCTCCTCTTCAAAAGCATTAGTACCCATAATATTGGGGATTGTGGGAGGCATCGTTGTAGCGTT
TATGGTATGTTTGTTTGCCATGCGGAGCAAACTGAAATCTGCTTTTTCACGGAGCCGAGTAACCCGTGCGCAGAATGAAGGTAGAATTTGCAGTTTGGCCTCTTTTTCACACAACCAAACTTATGTTTTCTGATGCAATTAGATTCTTCTTCACGTTTTCTTGTCTACTACACAGAAACATATGAAAATGATCAAGAATC
CACGCTACTGAAGCAGGGGCAAATTCTCTTCACCTTAAAAGCACTCATAGAAGCAACGGATAATTTTGATGAAAACAAGAAACTTGGAGAGGGAGGGTTTGGAACTGTATACAAGgtatgtatctaccaatttgtgttattattaagtttaactcatgacttgacatcatcttttagatagacgaaaacgaagaggggtt
tttctgtggtttggttatggggctgattgtttcagGGAATAACCAGAGACGGAAAAGAAATAGCAGTGAAGAAGTTGTCTGCACGATCTGGACAGGGAAAACGAGAATTTATGAATGAAGTGAAGCTTGTGGCCAATTTTCAACATCGAAATCTAGTAAAGCTGCTTGGTTGTTGTACCGAAGGACTAGAAAGGTTGCTT
GTTTATGAGTATTTGCCAAACAAGAGTCTTGACATCTTCTTGTTTGGTAGGTCATTTTGGACATTTTGGTTGAGGAGAATATGATAAATCTTTTCAAGATTGATTATTTAAAAGTTTTCAAATCTCGTATTTTTGAAATACAAATACAGATCGAGAGAAGAAGAGACATCTTGATTGGCAAAAGCGCTATAACATCATAC
TGGGAATAGCTCGTGGTCTTCTTTATCTTCACGAGGATTCACAGTTGCGAATCATTCATCGAGACATTAAAGCAAACAACATTTTGCTTGAGGAGCGATTCAATCCTAAAATAGCAGACTTTGGGTTAGCAAGACTGTTTCCTGAAGACAAAACTCATATCCAAACAAGAGTTGCAGGGACATAGTAAGATCATTTCCCT
CTACCCTTCTCTAATGCAATTTGTTAACAGTTAGAGCATTCTGCAATCCTGTGCTACAATTTGTTAAGGGTTTCTCATTGGAGTATGTAGCGGTTACATAGCGCCAGAGTATGCAATGCGGGGGCAACTATCGGTGAAAGCTGATGTCTATAGCTTTGGAGTGTTAATCCTTGAGATTGTGAGTGGAAGAAAAAGCAGTG
ATATGAAATTTCCCCAAGAAATGCAAAGCCTATTAGAATGGACATGGAGATTATACACGCAAGGGTGTCTTCTGGATATGATTGATTCAACAGTAACCGAAACATGCCGACAGGAGGAAGCTGTAAGATGCATTCACGTTGCCCTTCTATGCACACAACCGGATTCAGGCATCCGTCCGGCTATGTCTAGTGTTATACTG
ATGATCTCCAGCTCTTCCGTAACATTACCAAATCCAACAACGCCAGCATTTGTGAAAAGTAGTGAGAGCAACCTGGGAGGATCCACAGCCGGCAGCTATGGTAGTGGGATTCACAAGCCACGGTCGCTTGCCACGACATCATCTGTGTCGTCTGGCTCTACGCCTTTGGTTCCTTCTATAAATAATGTCACCGTCACTAT
CTTGGAAGATAGGTAGGCGGGTAATCCTCTTGGTTTACAGTTAAAAAAATAGGTTTTCGACGATATCAGAGACAAATAAATGTACTGGGTTAAGAGATTGAAATCGTTTTCTTGAAGTTCTGGTTTATTGTAATAATTTTCGGTTTCTGGTAATCCAGCGGTTTCTTGAAGTTCTTCGATATCTTAAATTCAAAATTTTA
GCAAGAATTTTGGCCTTGAAAATAGAATACGATGG
Intron 3 GTATATATTT ... TTTCCTTCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 100 | 0 | 3 | 5 |
| A4 | 60 | 1 | 2 | 1 |
| A5 | 100 | 0 | 2 | 1 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 100 | 0 | 5 | 4 |
| A8 | 100 | 0 | 2 | 2 |
| A9 | 63.64 | 2 | 5 | 2 |
| A10 | 87.5 | 1 | 9 | 5 |
>TRINITY_DN41410_c3_g1_i6 from sample A9 / Example spliced isoformCTTGACAAAGTAACACGCGGAAGTAGGAAAGGTGACAAAAAGCCCGCAGTGTAGACAGACCACCAGCACTGCAGACGGTTTCTGTGTTTGAAATGTTGCCTATACATTTTCAGATCACTGTCGTCAATAATTCAACCCTTCCCCATTCTCACCACTGTTTGCTGTGTCTCAATGATCTAATTCCACCAATGTTATAGCGC
CCTGCAACCCATATTCATCAGAATCATTGACAGAGCTTACCAGTTCGAACATCATGAGAAACTTCAATAACACAAATTGGCGCGTCT
>TRINITY_DN41410_c3_g1_i7 from sample A9 / Example unspliced isoform:CTTGACAAAGTAACACGCGGAAGTAGGAAAGGTGACAAAAAGCCCGCAGTGTAGACAGACCACCAGCACTGCAGACGGTTTCTGTGTTTGAAATGTTGCCTATACATTTTCAGATCACTGTCGTCAATAATTCAACCCTTCCCCATTCTCACCACTGTTTGCTGTGTCTCAATGATCTAATTCCACCAATGTTATAGCGC
CCTGCAACCCATATTCATCAGAATCATTGACAGAGCTTACCAGTTCGAACATCATGAGAAACTTCAATAAgtatatatttttatacttttctgattccagcaaacaaaaacttattctaagtcatttgatcggtttactattcatttatagttttccttcagCACAAATTGGCGCGTCTACATGCAATAATGCCTCTACT
TACGCGGATGGAAGTAAATTTTCGAGCAATTTGAATAGAGTAATGGGTGATCTAGTGAAGAACGCACCTCAAACAGGGTTCAACACTTCTTGGTATGGCCAAAGTCCCAACAGAATCTATGGCCTCCTCCAGTGCTCAGGTAACATATCTCAACACGACTGCTCAATCTGTTCACAGCGAGCAAACGATAAAATTCTACA
ACTTTGTAGAAACCGCGTAGGCGGTCTTTTATGGCTTGATAACTGCTTCCTGCGATACGAGAACTATAGCTTCTTTCTACAGCTAGACACCAATGGGACTTATTTGCAGAACGCAAATGAAATTAGTACAAGTAATCTATATAATTTCAGTACCATTACTTCAAATCTCCTTTTCAACCTGTCTGATGAGGCCTACAATT
TTGCAAATAAGGGATTCGCTCAAGGTTCAGCTACATATTCTGCTAATGGCAATGTTTACGGTCTAGTTCAATGCTGGAGAGATATATCCATCAAGGACTGCAGATCTTGTTTGCAAATAGCAACATCTTATCTCCTCAAATGTTGTGCTCTGATTGAAGGAGCCCAAGCCCTGTTGGGAAGCTGCAGGGTCCGATATGAA
ATATACCCCTTTTTTAACACTAGTACTGAAGGGAGTAGTACTAGTCCCCCATCCTCTGCCTCCTCCGTGGCAAACCCTCAAACGAAAGCTACCCAGACTCCTCGAGCGAATGAAACTTCACCCACCATGTCAAAATTCTCCTCTTCAAAAGCATTAGTACCCATAATATTGGGGATTGTGGGAGGCATCGTTGTAGCGTT
TATGGTATGTTTGTTTGCCATGCGGAGCAAACTGAAATCTGCTTTTTCACGGAGCCGAGTAACCCGTGCGCAGAATGAAGAAACATATGAAAATGATCAAGAATCCACGCTACTGAAGCAGGGGCAAATTCTCTTCACCTTAAAAGCACTCATAGAAGCAACGGATAATTTTGATGAAAACAAGAAACTTGGAGAGGGAG
GGTTTGGAACTGTATACAAGGGAATAACCAGAGACGGAAAAGAAATAGCAGTGAAGAAGTTGTCTGCACGATCTGGACAGGGAAAACGAGAATTTATGAATGAAGTGAAGCTTGTGGCCAATTTTCAACATCGAAATCTAGTAAAGCTGCTTGGTTGTTGTACCGAAGGACTAGAAAGGTTGCTTGTTTATGAGTATTTG
CCAAACAAGAGTCTTGACATCTTCTTGTTTGGTAGGTCATTTTGGACATTTTGGTTGAGGAGAATATGATAAATCTTTTCAAGATTGATTATTTAAAAGTTTTCAAATCTCGTATTTTTGAAATACAAATACAGATCGAGAGAAGAAGAGACATCTTGATTGGCAAAAGCGCTATAACATCATACTGGGAATAGCTCGTG
GTCTTCTTTATCTTCACGAGGATTCACAGTTGCGAATCATTCATCGAGACATTAAAGCAAACAACATTTTGCTTGAGGAGCGATTCAATCCTAAAATAGCAGACTTTGGGTTAGCAAGACTGTTTCCTGAAGACAAAACTCATATCCAAACAAGAGTTGCAGGGACATACGGTTACATAGCGCCAGAGTATGCAATGCGG
GGGCAACTATCGGTGAAAGCTGATGTCTATAGCTTTGGAGTGTTAATCCTTGAGATTGTGAGTGGAAGAAAAAGCAGTGATATGAAATTTCCCCAAGAAATGCAAAGCCTATTAGAATGGACATGGAGATTATACACGCAAGGGTGTCTTCTGGATATGATTGATTCAACAGTAACCGAAACATGCCGACAGGAGGAAGC
TGTAAGATGCATTCACGTTGCACTTCTATGCACACAACCGGATTCAGGCATCCGTCCGGCTATGTCTAGTGTTATACTGATGATCTCCAGCTCTTCCGTAACATTACCAAATCCAACAACGCCAGCATTTGTGAAAAGTAGTGAGAGCAACCTGGGAGGATCCACAGCCGGCAGCTATGGTAGTGGGATTCACAAGCCAC
GGTCGCTTGCCACGACATCATCTGTGTCGTCTGGCTCTACGCCTTTGGTTCCTTCTATAAATAATGTCACCGTCACTATCTTGGAAGATAGGTAGGCGGGTAATCCTCTTGGTTTACAGTTAAAAAAATAGGTTTTCGACGATATCAGAGACAAATAAATGTACTGGGTTAAGAGATTGAAATCGTTTTCTTGAAGTTCT
GGTTTATTGTAATAATTTTCGGTTTCTGGTAATCCAGCGGTTTCTTGAAGTTCTTCGATATCTTAAATTCAAAATTTTAGCAAGAATTTTGGCCTTGAAAATAGAATACGATGG
Intron 4 GTATGTATCT ... GAATAACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.67 | 11 | 6 | 2 |
| A2 | 33.33 | 6 | 6 | 0 |
| A3 | 50 | 2 | 4 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 42.86 | 2 | 0 | 3 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 33.33 | 10 | 1 | 9 |
| A8 | 38.46 | 8 | 2 | 8 |
| A9 | 33.33 | 12 | 1 | 11 |
| A10 | 25.93 | 10 | 1 | 6 |
>TRINITY_DN41410_c3_g1_i5 from sample A9 / Example spliced isoformCTTGACAAAGTAACACGCGGAAGTAGGAAAGGTGACAAAAAGCCCGCAGTGTAGACAGACCACCAGCACTGCAGACGGTTTCTGTGTTTGAAATGTTGCCTATACATTTTCAGATCACTGTCGTCAATAATTCAACCCTTCCCCATTCTCACCACTGTTTGCTGTGTCTCAATGATCTAATTCCACCAATGTTATAGCGC
CCTGCAACCCATATTCATCAGAATCATTGACAGAGCTTACCAGTTCGAACATCATGAGAAACTTCAATAAGTATATATTTTTATACTTTTCTGATTCCAGCAAACAAAAACTTATTCTAAGTCATTTGATCGGTTTACTATTCATTTATAGTTTTCCTTCAGCACAAATTGGCGCGTCTACATGCAATAATGCCTCTACT
TACGCGGATGGAAGTAAATTTTCGAGCAATTTGAATAGAGTAATGGGTGATCTAGTGAAGAACGCACCTCAAACAGGGTTCAACACTTCTTGGTATGGCCAAAGTCCCAACAGAATCTATGGCCTCCTCCAGTGCTCAGGTAACATATCTCAACACGACTGCTCAATCTGTTCACAGCGAGCAAACGATAAAATTCTACA
ACTTTGTAGAAACCGCGTAGGCGGTCTTTTATGGCTTGATAACTGCTTCCTGCGATACGAGAACTATAGCTTCTTTCTACAGCTAGACACCAATGGGACTTATTTGCAGAACGCAAATGAAATTAGTACAAGTAATCTATATAATTTCAGTACCATTACTTCAAATCTCCTTTTCAACCTGTCTGATGAGGCCTACAATT
TTGCAAATAAGGGATTCGCTCAAGGTTCAGCTACATATTCTGCTAATGGCAATGTTTACGGTCTAGTTCAATGCTGGAGAGATATATCCATCAAGGACTGCAGATCTTGTTTGCAAATAGCAACATCTTATCTCCTCAAATGTTGTGCTCTGATTGAAGGAGCCCAAGCCCTGTTGGGAAGCTGCAGGGTCCGATATGAA
ATATACCCCTTTTTTAACACTAGTACTGAAGGGAGTAGTACTAGTCCCCCATCCTCTGCCTCCTCCGTGGCAAACCCTCAAACGAAAGCTACCCAGACTCCTCGAGCGAATGAAACTTCACCCACCATGTCAAAATTCTCCTCTTCAAAAGCATTAGTACCCATAATATTGGGGATTGTGGGAGGCATCGTTGTAGCGTT
TATGGTATGTTTGTTTGCCATGCGGAGCAAACTGAAATCTGCTTTTTCACGGAGCCGAGTAACCCGTGCGCAGAATGAAGAAACATATGAAAATGATCAAGAATCCACGCTACTGAAGCAGGGGCAAATTCTCTTCACCTTAAAAGCACTCATAGAAGCAACGGATAATTTTGATGAAAACAAGAAACTTGGAGAGGGAG
GGTTTGGAACTGTATACAAGAGACGGAAAAGAAATAGCAGTGAAGAAGTTGTCTGCACGATCTGGACAGGGAAAACGAGAATTTATGAATGAAGTGAAGCTTGTGGCCAATTTTCAACATCGAAATCTAGTAAAGCTGCTTGGTTGTTGTACCGAAGGACTAGAAAGGTTGCTTGTTTATGAGTATTTGCCAAACAAGAG
TCTTGACATCTTCTTGTTTGGTAGGTCATTTTGGACATTTTGGTTGAGGAGAATATGATAAATCTTTTCAAGATTGATTATTTAAAAGTTTTCAAATCTCGTATTTTTGAAATACAAATACAGATCGAGAGAAGAAGAGACATCTTGATTGGCAAAAGCGCTATAACATCATACTGGGAATAGCTCGTGGTCTTCTTTAT
CTTCACGAGGATTCACAGTTGCGAATCATTCATCGAGACATTAAAGCAAACAACATTTTGCTTGAGGAGCGATTCAATCCTAAAATAGCAGACTTTGGGTTAGCAAGACTGTTTCCTGAAGACAAAACTCATATCCAAACAAGAGTTGCAGGGACATAGTAAGATCATTTCCCTCTACCCTTCTCTAATGCAATTTGTTA
ACAGTTAGAGCATTCTGCAATCCTGTGCTACAATTTGTTAAGGGTTTCTCATTGGAGTATGTAGCGGTTACATAGCGCCAGAGTATGCAATGCGGGGGCAACTATCGGTGAAAGCTGATGTCTATAGCTTTGGAGTGTTAATCCTTGAGATTGTGAGTGGAAGAAAAAGCAGTGATATGAAATTTCCCCAAGAAATGCAA
AGCCTATTAGAATGGACATGGAGATTATACACGCAAGGGTGTCTTCTGGATATGATTGATTCAACAGTAACCGAAACATGCCGACAGGAGGAAGCTGTAAGATGCATTCACGTTGCACTTCTATGCACACAACCGGATTCAGGCATCCGTCCGGCTATGTCTAGTGTTATACTGATGATCTCCAGCTCTTCCGTAACATT
ACCAAATCCAACAACGCCAGCATTTGTGAAAAGTAGTGAGAGCAACCTGGGAGGATCCACAGCCGGCAGCTATGGTAGTGGGATTCACAAGCCACGGTCGCTTGCCACGACATCATCTGTGTCGTCTGGCTCTACGCCTTTGGTTCCTTCTATAAATAATGTCACCGTCACTATCTTGGAAGATAGGTAGGCGGGTAATC
CTCTTGGTTTACAGTTAAAAAAATAGGTTTTCGACGATATCAGAGACAAATAAATGTACTGGGTTAAGAGATTGAAATCGTTTTCTTGAAGTTCTGGTTTATTGTAATAATTTTCGGTTTCTGGTAATCCAGCGGTTTCTTGAAGTTCTTCGATATCTTAAATTCAAAATTTTAGCAAGAATTTTGGCCTTGAAAATAGA
ATACGATGG
>TRINITY_DN41410_c3_g1_i4 from sample A9 / Example unspliced isoform:CTTGACAAAGTAACACGCGGAAGTAGGAAAGGTGACAAAAAGCCCGCAGTGTAGACAGACCACCAGCACTGCAGACGGTTTCTGTGTTTGAAATGTTGCCTATACATTTTCAGATCACTGTCGTCAATAATTCAACCCTTCCCCATTCTCACCACTGTTTGCTGTGTCTCAATGATCTAATTCCACCAATGTTATAGCGC
CCTGCAACCCATATTCATCAGAATCATTGACAGAGCTTACCAGTTCGAACATCATGAGAAACTTCAATAAGTATATATTTTTATACTTTTCTGATTCCAGCAAACAAAAACTTATTCTAAGTCATTTGATCGGTTTACTATTCATTTATAGTTTTCCTTCAGCACAAATTGGCGCGTCTACATGCAATAATGCCTCTACT
TACGCGGATGGAAGTAAATTTTCGAGCAATTTGAATAGAGTAATGGGTGATCTAGTGAAGAACGCACCTCAAACAGGGTTCAACACTTCTTGGTATGGCCAAAGTCCCAACAGAATCTATGGCCTCCTCCAGTGCTCAGGTAACATATCTCAACACGACTGCTCAATCTGTTCACAGCGAGCAAACGATAAAATTCTACA
ACTTTGTAGAAACCGCGTAGGCGGTCTTTTATGGCTTGATAACTGCTTCCTGCGATACGAGAACTATAGCTTCTTTCTACAGCTAGACACCAATGGGACTTATTTGCAGAACGCAAATGAAATTAGTACAAGTAATCTATATAATTTCAGTACCATTACTTCAAATCTCCTTTTCAACCTGTCTGATGAGGCCTACAATT
TTGCAAATAAGGGATTCGCTCAAGGTTCAGCTACATATTCTGCTAATGGCAATGTTTACGGTCTAGTTCAATGCTGGAGAGATATATCCATCAAGGACTGCAGATCTTGTTTGCAAATAGCAACATCTTATCTCCTCAAATGTTGTGCTCTGATTGAAGGAGCCCAAGCCCTGTTGGGAAGCTGCAGGGTCCGATATGAA
ATATACCCCTTTTTTAACACTAGTACTGAAGGGAGTAGTACTAGTCCCCCATCCTCTGCCTCCTCCGTGGCAAACCCTCAAACGAAAGCTACCCAGACTCCTCGAGCGAATGAAACTTCACCCACCATGTCAAAATTCTCCTCTTCAAAAGCATTAGTACCCATAATATTGGGGATTGTGGGAGGCATCGTTGTAGCGTT
TATGGTATGTTTGTTTGCCATGCGGAGCAAACTGAAATCTGCTTTTTCACGGAGCCGAGTAACCCGTGCGCAGAATGAAGGTAGAATTTGCAGTTTGGCCTCTTTTTCACACAACCAAACTTATGTTTTCTGATGCAATTAGATTCTTCTTCACGTTTTCTTGTCTACTACACAGAAACATATGAAAATGATCAAGAATC
CACGCTACTGAAGCAGGGGCAAATTCTCTTCACCTTAAAAGCACTCATAGAAGCAACGGATAATTTTGATGAAAACAAGAAACTTGGAGAGGGAGGGTTTGGAACTGTATACAAGgtatgtatctaccaatttgtgttattattaagtttaactcatgacttgacatcatcttttagatagacgaaaacgaagaggggtt
tttctgtggtttggttatggggctgattgtttcagggaataaccagAGACGGAAAAGAAATAGCAGTGAAGAAGTTGTCTGCACGATCTGGACAGGGAAAACGAGAATTTATGAATGAAGTGAAGCTTGTGGCCAATTTTCAACATCGAAATCTAGTAAAGCTGCTTGGTTGTTGTACCGAAGGACTAGAAAGGTTGCTT
GTTTATGAGTATTTGCCAAACAAGAGTCTTGACATCTTCTTGTTTGGTAGGTCATTTTGGACATTTTGGTTGAGGAGAATATGATAAATCTTTTCAAGATTGATTATTTAAAAGTTTTCAAATCTCGTATTTTTGAAATACAAATACAGATCGAGAGAAGAAGAGACATCTTGATTGGCAAAAGCGCTATAACATCATAC
TGGGAATAGCTCGTGGTCTTCTTTATCTTCACGAGGATTCACAGTTGCGAATCATTCATCGAGACATTAAAGCAAACAACATTTTGCTTGAGGAGCGATTCAATCCTAAAATAGCAGACTTTGGGTTAGCAAGACTGTTTCCTGAAGACAAAACTCATATCCAAACAAGAGTTGCAGGGACATAGTAAGATCATTTCCCT
CTACCCTTCTCTAATGCAATTTGTTAACAGTTAGAGCATTCTGCAATCCTGTGCTACAATTTGTTAAGGGTTTCTCATTGGAGTATGTAGCGGTTACATAGCGCCAGAGTATGCAATGCGGGGGCAACTATCGGTGAAAGCTGATGTCTATAGCTTTGGAGTGTTAATCCTTGAGATTGTGAGTGGAAGAAAAAGCAGTG
ATATGAAATTTCCCCAAGAAATGCAAAGCCTATTAGAATGGACATGGAGATTATACACGCAAGGGTGTCTTCTGGATATGATTGATTCAACAGTAACCGAAACATGCCGACAGGAGGAAGCTGTAAGATGCATTCACGTTGCCCTTCTATGCACACAACCGGATTCAGGCATCCGTCCGGCTATGTCTAGTGTTATACTG
ATGATCTCCAGCTCTTCCGTAACATTACCAAATCCAACAACGCCAGCATTTGTGAAAAGTAGTGAGAGCAACCTGGGAGGATCCACAGCCGGCAGCTATGGTAGTGGGATTCACAAGCCACGGTCGCTTGCCACGACATCATCTGTGTCGTCTGGCTCTACGCCTTTGGTTCCTTCTATAAATAATGTCACCGTCACTAT
CTTGGAAGATAGGTAGGCGGGTAATCCTCTTGGTTTACAGTTAAAAAAATAGGTTTTCGACGATATCAGAGACAAATAAATGTACTGGGTTAAGAGATTGAAATCGTTTTCTTGAAGTTCTGGTTTATTGTAATAATTTTCGGTTTCTGGTAATCCAGCGGTTTCTTGAAGTTCTTCGATATCTTAAATTCAAAATTTTA
GCAAGAATTTTGGCCTTGAAAATAGAATACGATGG
Intron 5 GTAAGATCAT ... GAGTATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 2 | 0 | 1 |
| A2 | 28.57 | 5 | 0 | 4 |
| A3 | 11.11 | 8 | 0 | 2 |
| A4 | 33.33 | 1 | 0 | 1 |
| A5 | 42.86 | 2 | 1 | 2 |
| A6 | 9.09 | 5 | 0 | 1 |
| A7 | 17.65 | 7 | 2 | 1 |
| A8 | 50 | 4 | 4 | 4 |
| A9 | 14.29 | 18 | 3 | 3 |
| A10 | 20 | 2 | 1 | 0 |
>TRINITY_DN36833_c0_g2_i1 from sample A7 / Example spliced isoformGTTTTCCTTCAGTTATGTCAGAATTGCGGTCATACACATGCAGTAATGCCTCTACGTATGCCAATGGAAGTGCATTTTCGAGCAGTTTGAATAGGGTAATGGCTGATCTACTGAAGAACGCACCTCAAACAGGGTTCAACACTTCTTGGTATGGCCAAAGTCCCAACAGAATCTATGGCCTCCTCCAGTGCTCAGGGATT
CGCTCAAGGTTCAGCTACATATTCTGCTAATGGCAATGTTTACGGTCTAGTTCAATGCTGGAGAGATATATCCATCAAGGACTGCAGATCTTGTTTGCAAATAGCAACATCTTATCTCCTCAAATGTTGTGCTCTGATTGAAGGAGCCCAAGCCCTGTTGGGAAGCTGCAGGGTCCGATATGAAATATACCCCTTTTTTA
ACACTAGTACTGAAGGGAGTAGTACTAGTCCCCCATCCTCTGCCTCCTCCGTGGCAAACCCTCAAACGAAAGCTACCCAGACTCCTCGAGCGAATGAAACTTCACCCACCATGTCAAAATTCTCCTCTTCAAAAGCATTAGTACCCATAATATTGGGGATTGTGGGAGGCATCGTTGTAGCGTTTATGGTATGTTTGTTT
GCCATGCGGAGCAAACTGAAATCTGCTTTTTCACGGAGCCGAGTAACCCGTGCGCAGAATGAAGAAACATATGAAAATGATCAAGAATCCACGCTACTGAAGCAGGGGCAAATTCTCTTCACCTTAAAAGCACTCATAGAAGCAACGGATAATTTTGATGAAAACAAGAAACTTGGAGAGGGAGGGTTTGGAACTGTATA
CAAGGGAATAACCAGAGACGGAAAAGAAATAGCAGTGAAGAAGTTGTCTGCACGATCTGGACAGGGAAAACGAGAATTTATGAATGAAGTGAAGCTTGTGGCCAATTTTCAACATCGAAATCTAGTAAAGCTGCTTGGTTGTTGTACCGAAGGACTAGAAAGGTTGCTTGTTTATGAGTATTTGCCAAACAAGAGTCTTG
ACATCTTCTTGTTTGATCGAGAGAAGAAGAGACATCTTGATTGGCAAAAGCGCTATAACATCATACTGGGAATAGCTCGTGGTCTTCTTTATCTTCACGAGGATTCACAGTTGCGAATCATTCATCGAGACATTAAAGCAAACAACATTTTGCTTGAGGAGCGATTCAATCCTAAAATAGCAGACTTTGGGTTAGCAAGA
CTGTTTCCTGAAGACAAAACTCATATCCAAACAAGAGTTGCAGGGACATACGGTTACATAGCGCCAGAGTATGCAATGCGGGGGCAACTATCGGTGAAAGCTGATGTCTATAGCTTTGGAGTGTTAATCCTTGAGATTGTGAGTGGAAGAAAAAGCAGTGATATGAAATTTCCCCAAGAAATGCAAAGCCTATTAGAATG
GACATGGAGATTATACACGCAAGGGTGTCTTCTGGATATGATTGATTCAACAGTAACCGAAACATGCCGACAGGAGGAAGCTGTAAGATGCATTCACGTTGCACTTCTATGCACACAACCGGATTCAGGCATCCGTCCGGCTATGTCTAGTGTTATACTGATGATCTCCAGCTCTTCCGTAACATTACCAAATCCAACAA
CGCCAGCATTTGTGAAAAGTAGTGAGAGCAACCTGGGAGGATCCACAGCCGGCAGCTATGGTAGTGGGATTCACAAGCCACGGTCGCTTGCCACGACATCATCTGTGTCGTCTGGCTCTACGCCTTTGGTTCCTTCTATAAATAATGTCACCGTCACTATCTTGGAAGATAGGTAGGCGGGTAATCCTCTTGGTTTACAG
TTAAAAAAATAGGTTTTCGACGATATCAGAGACAAATAAATGTACTGGGTTAAGAGATTGAAATCGTTTTCTTGAAGTTCTGGTTTATTGTAATAATTTTCGGTTTCTGGTAATCCAGCGGTTTCTTGAAGTTCTTCGATATCTTAAATTCAAAATTTTAGCAAGAATTTTGGCCTTGAAAAT
>TRINITY_DN36833_c0_g2_i2 from sample A7 / Example unspliced isoform:GTTTTCCTTCAGTTATGTCAGAATTGCGGTCATACACATGCAGTAATGCCTCTACGTATGCCAATGGAAGTGCATTTTCGAGCAGTTTGAATAGGGTAATGGCTGATCTACTGAAGAACGCACCTCAAACAGGGTTCAACACTTCTTGGTATGGCCAAAGTCCCAACAGAATCTATGGCCTCCTCCAGTGCTCAGGGATT
CGCTCAAGGTTCAGCTACATATTCTGCTAATGGCAATGTTTACGGTCTAGTTCAATGCTGGAGAGATATATCCATCAAGGACTGCAGATCTTGTTTGCAAATAGCAACATCTTATCTCCTCAAATGTTGTGCTCTGATTGAAGGAGCCCAAGCCCTGTTGGGAAGCTGCAGGGTCCGATATGAAATATACCCCTTTTTTA
ACACTAGTACTGAAGGGAGTAGTACTAGTCCCCCATCCTCTGCCTCCTCCGTGGCAAACCCTCAAACGAAAGCTACCCAGACTCCTCGAGCGAATGAAACTTCACCCACCATGTCAAAATTCTCCTCTTCAAAAGCATTAGTACCCATAATATTGGGGATTGTGGGAGGCATCGTTGTAGCGTTTATGGTATGTTTGTTT
GCCATGCGGAGCAAACTGAAATCTGCTTTTTCACGGAGCCGAGTAACCCGTGCGCAGAATGAAGAAACATATGAAAATGATCAAGAATCCACGCTACTGAAGCAGGGGCAAATTCTCTTCACCTTAAAAGCACTCATAGAAGCAACGGATAATTTTGATGAAAACAAGAAACTTGGAGAGGGAGGGTTTGGAACTGTATA
CAAGGGAATAACCAGAGACGGAAAAGAAATAGCAGTGAAGAAGTTGTCTGCACGATCTGGACAGGGAAAACGAGAATTTATGAATGAAGTGAAGCTTGTGGCCAATTTTCAACATCGAAATCTAGTAAAGCTGCTTGGTTGTTGTACCGAAGGACTAGAAAGGTTGCTTGTTTATGAGTATTTGCCAAACAAGAGTCTTG
ACATCTTCTTGTTTGATCGAGAGAAGAAGAGACATCTTGATTGGCAAAAGCGCTATAACATCATACTGGGAATAGCTCGTGGTCTTCTTTATCTTCACGAGGATTCACAGTTGCGAATCATTCATCGAGACATTAAAGCAAACAACATTTTGCTTGAGGAGCGATTCAATCCTAAAATAGCAGACTTTGGGTTAGCAAGA
CTGTTTCCTGAAGACAAAACTCATATCCAAACAAGAGTTGCAGGGACATAgtaagatcatttccctctacccttctctaatgcaatttgttaacagttagagcattctgcaatcctgtgctacaatttgttaagggtttctcattggagtatgtagCGGTTACATAGCGCCAGAGTATGCAATGCGGGGGCAACTATCGG
TGAAAGCTGATGTCTATAGCTTTGGAGTGTTAATCCTTGAGATTGTGAGTGGAAGAAAAAGCAGTGATATGAAATTTCCCCAAGAAATGCAAAGCCTATTAGAATGGACATGGAGATTATACACGCAAGGGTGTCTTCTGGATATGATTGATTCAACAGTAACCGAAACATGCCGACAGGAGGAAGCTGTAAGATGCATT
CACGTTGCACTTCTATGCACACAACCGGATTCAGGCATCCGTCCGGCTATGTCTAGTGTTATACTGATGATCTCCAGCTCTTCCGTAACATTACCAAATCCAACAACGCCAGCATTTGTGAAAAGTAGTGAGAGCAACCTGGGAGGATCCACAGCCGGCAGCTATGGTAGTGGGATTCACAAGCCACGGTCGCTTGCCAC
GACATCATCTGTGTCGTCTGGCTCTACGCCTTTGGTTCCTTCTATAAATAATGTCACCGTCACTATCTTGGAAGATAGGTAGGCGGGTAATCCTCTTGGTTTACAGTTAAAAAAATAGGTTTTCGACGATATCAGAGACAAATAAATGTACTGGGTTAAGAGATTGAAATCGTTTTCTTGAAGTTCTGGTTTATTGTAAT
AATTTTCGGTTTCTGGTAATCCAGCGGTTTCTTGAAGTTCTTCGATATCTTAAATTCAAAATTTTAGCAAGAATTTTGGCCTTGAAAAT
Intron 6 GTAGAATTTG ... TACTACACAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36 | 8 | 1 | 8 |
| A2 | 33.33 | 3 | 0 | 3 |
| A3 | 33.33 | 2 | 0 | 2 |
| A4 | 33.33 | 2 | 0 | 2 |
| A5 | 0 | 2 | 0 | 0 |
| A6 | 0 | 3 | 0 | 0 |
| A7 | 25 | 3 | 1 | 1 |
| A8 | 10 | 9 | 0 | 2 |
| A9 | 14.29 | 6 | 2 | 0 |
| A10 | 56.52 | 5 | 6 | 7 |
>TRINITY_DN41410_c3_g1_i5 from sample A9 / Example spliced isoformCTTGACAAAGTAACACGCGGAAGTAGGAAAGGTGACAAAAAGCCCGCAGTGTAGACAGACCACCAGCACTGCAGACGGTTTCTGTGTTTGAAATGTTGCCTATACATTTTCAGATCACTGTCGTCAATAATTCAACCCTTCCCCATTCTCACCACTGTTTGCTGTGTCTCAATGATCTAATTCCACCAATGTTATAGCGC
CCTGCAACCCATATTCATCAGAATCATTGACAGAGCTTACCAGTTCGAACATCATGAGAAACTTCAATAAGTATATATTTTTATACTTTTCTGATTCCAGCAAACAAAAACTTATTCTAAGTCATTTGATCGGTTTACTATTCATTTATAGTTTTCCTTCAGCACAAATTGGCGCGTCTACATGCAATAATGCCTCTACT
TACGCGGATGGAAGTAAATTTTCGAGCAATTTGAATAGAGTAATGGGTGATCTAGTGAAGAACGCACCTCAAACAGGGTTCAACACTTCTTGGTATGGCCAAAGTCCCAACAGAATCTATGGCCTCCTCCAGTGCTCAGGTAACATATCTCAACACGACTGCTCAATCTGTTCACAGCGAGCAAACGATAAAATTCTACA
ACTTTGTAGAAACCGCGTAGGCGGTCTTTTATGGCTTGATAACTGCTTCCTGCGATACGAGAACTATAGCTTCTTTCTACAGCTAGACACCAATGGGACTTATTTGCAGAACGCAAATGAAATTAGTACAAGTAATCTATATAATTTCAGTACCATTACTTCAAATCTCCTTTTCAACCTGTCTGATGAGGCCTACAATT
TTGCAAATAAGGGATTCGCTCAAGGTTCAGCTACATATTCTGCTAATGGCAATGTTTACGGTCTAGTTCAATGCTGGAGAGATATATCCATCAAGGACTGCAGATCTTGTTTGCAAATAGCAACATCTTATCTCCTCAAATGTTGTGCTCTGATTGAAGGAGCCCAAGCCCTGTTGGGAAGCTGCAGGGTCCGATATGAA
ATATACCCCTTTTTTAACACTAGTACTGAAGGGAGTAGTACTAGTCCCCCATCCTCTGCCTCCTCCGTGGCAAACCCTCAAACGAAAGCTACCCAGACTCCTCGAGCGAATGAAACTTCACCCACCATGTCAAAATTCTCCTCTTCAAAAGCATTAGTACCCATAATATTGGGGATTGTGGGAGGCATCGTTGTAGCGTT
TATGGTATGTTTGTTTGCCATGCGGAGCAAACTGAAATCTGCTTTTTCACGGAGCCGAGTAACCCGTGCGCAGAATGAAGAAACATATGAAAATGATCAAGAATCCACGCTACTGAAGCAGGGGCAAATTCTCTTCACCTTAAAAGCACTCATAGAAGCAACGGATAATTTTGATGAAAACAAGAAACTTGGAGAGGGAG
GGTTTGGAACTGTATACAAGAGACGGAAAAGAAATAGCAGTGAAGAAGTTGTCTGCACGATCTGGACAGGGAAAACGAGAATTTATGAATGAAGTGAAGCTTGTGGCCAATTTTCAACATCGAAATCTAGTAAAGCTGCTTGGTTGTTGTACCGAAGGACTAGAAAGGTTGCTTGTTTATGAGTATTTGCCAAACAAGAG
TCTTGACATCTTCTTGTTTGGTAGGTCATTTTGGACATTTTGGTTGAGGAGAATATGATAAATCTTTTCAAGATTGATTATTTAAAAGTTTTCAAATCTCGTATTTTTGAAATACAAATACAGATCGAGAGAAGAAGAGACATCTTGATTGGCAAAAGCGCTATAACATCATACTGGGAATAGCTCGTGGTCTTCTTTAT
CTTCACGAGGATTCACAGTTGCGAATCATTCATCGAGACATTAAAGCAAACAACATTTTGCTTGAGGAGCGATTCAATCCTAAAATAGCAGACTTTGGGTTAGCAAGACTGTTTCCTGAAGACAAAACTCATATCCAAACAAGAGTTGCAGGGACATAGTAAGATCATTTCCCTCTACCCTTCTCTAATGCAATTTGTTA
ACAGTTAGAGCATTCTGCAATCCTGTGCTACAATTTGTTAAGGGTTTCTCATTGGAGTATGTAGCGGTTACATAGCGCCAGAGTATGCAATGCGGGGGCAACTATCGGTGAAAGCTGATGTCTATAGCTTTGGAGTGTTAATCCTTGAGATTGTGAGTGGAAGAAAAAGCAGTGATATGAAATTTCCCCAAGAAATGCAA
AGCCTATTAGAATGGACATGGAGATTATACACGCAAGGGTGTCTTCTGGATATGATTGATTCAACAGTAACCGAAACATGCCGACAGGAGGAAGCTGTAAGATGCATTCACGTTGCACTTCTATGCACACAACCGGATTCAGGCATCCGTCCGGCTATGTCTAGTGTTATACTGATGATCTCCAGCTCTTCCGTAACATT
ACCAAATCCAACAACGCCAGCATTTGTGAAAAGTAGTGAGAGCAACCTGGGAGGATCCACAGCCGGCAGCTATGGTAGTGGGATTCACAAGCCACGGTCGCTTGCCACGACATCATCTGTGTCGTCTGGCTCTACGCCTTTGGTTCCTTCTATAAATAATGTCACCGTCACTATCTTGGAAGATAGGTAGGCGGGTAATC
CTCTTGGTTTACAGTTAAAAAAATAGGTTTTCGACGATATCAGAGACAAATAAATGTACTGGGTTAAGAGATTGAAATCGTTTTCTTGAAGTTCTGGTTTATTGTAATAATTTTCGGTTTCTGGTAATCCAGCGGTTTCTTGAAGTTCTTCGATATCTTAAATTCAAAATTTTAGCAAGAATTTTGGCCTTGAAAATAGA
ATACGATGG
>TRINITY_DN41410_c3_g1_i4 from sample A9 / Example unspliced isoform:CTTGACAAAGTAACACGCGGAAGTAGGAAAGGTGACAAAAAGCCCGCAGTGTAGACAGACCACCAGCACTGCAGACGGTTTCTGTGTTTGAAATGTTGCCTATACATTTTCAGATCACTGTCGTCAATAATTCAACCCTTCCCCATTCTCACCACTGTTTGCTGTGTCTCAATGATCTAATTCCACCAATGTTATAGCGC
CCTGCAACCCATATTCATCAGAATCATTGACAGAGCTTACCAGTTCGAACATCATGAGAAACTTCAATAAGTATATATTTTTATACTTTTCTGATTCCAGCAAACAAAAACTTATTCTAAGTCATTTGATCGGTTTACTATTCATTTATAGTTTTCCTTCAGCACAAATTGGCGCGTCTACATGCAATAATGCCTCTACT
TACGCGGATGGAAGTAAATTTTCGAGCAATTTGAATAGAGTAATGGGTGATCTAGTGAAGAACGCACCTCAAACAGGGTTCAACACTTCTTGGTATGGCCAAAGTCCCAACAGAATCTATGGCCTCCTCCAGTGCTCAGGTAACATATCTCAACACGACTGCTCAATCTGTTCACAGCGAGCAAACGATAAAATTCTACA
ACTTTGTAGAAACCGCGTAGGCGGTCTTTTATGGCTTGATAACTGCTTCCTGCGATACGAGAACTATAGCTTCTTTCTACAGCTAGACACCAATGGGACTTATTTGCAGAACGCAAATGAAATTAGTACAAGTAATCTATATAATTTCAGTACCATTACTTCAAATCTCCTTTTCAACCTGTCTGATGAGGCCTACAATT
TTGCAAATAAGGGATTCGCTCAAGGTTCAGCTACATATTCTGCTAATGGCAATGTTTACGGTCTAGTTCAATGCTGGAGAGATATATCCATCAAGGACTGCAGATCTTGTTTGCAAATAGCAACATCTTATCTCCTCAAATGTTGTGCTCTGATTGAAGGAGCCCAAGCCCTGTTGGGAAGCTGCAGGGTCCGATATGAA
ATATACCCCTTTTTTAACACTAGTACTGAAGGGAGTAGTACTAGTCCCCCATCCTCTGCCTCCTCCGTGGCAAACCCTCAAACGAAAGCTACCCAGACTCCTCGAGCGAATGAAACTTCACCCACCATGTCAAAATTCTCCTCTTCAAAAGCATTAGTACCCATAATATTGGGGATTGTGGGAGGCATCGTTGTAGCGTT
TATGGTATGTTTGTTTGCCATGCGGAGCAAACTGAAATCTGCTTTTTCACGGAGCCGAGTAACCCGTGCGCAGAATGAAGgtagaatttgcagtttggcctctttttcacacaaccaaacttatgttttctgatgcaattagattcttcttcacgttttcttgtctactacacagAAACATATGAAAATGATCAAGAATC
CACGCTACTGAAGCAGGGGCAAATTCTCTTCACCTTAAAAGCACTCATAGAAGCAACGGATAATTTTGATGAAAACAAGAAACTTGGAGAGGGAGGGTTTGGAACTGTATACAAGGTATGTATCTACCAATTTGTGTTATTATTAAGTTTAACTCATGACTTGACATCATCTTTTAGATAGACGAAAACGAAGAGGGGTT
TTTCTGTGGTTTGGTTATGGGGCTGATTGTTTCAGGGAATAACCAGAGACGGAAAAGAAATAGCAGTGAAGAAGTTGTCTGCACGATCTGGACAGGGAAAACGAGAATTTATGAATGAAGTGAAGCTTGTGGCCAATTTTCAACATCGAAATCTAGTAAAGCTGCTTGGTTGTTGTACCGAAGGACTAGAAAGGTTGCTT
GTTTATGAGTATTTGCCAAACAAGAGTCTTGACATCTTCTTGTTTGGTAGGTCATTTTGGACATTTTGGTTGAGGAGAATATGATAAATCTTTTCAAGATTGATTATTTAAAAGTTTTCAAATCTCGTATTTTTGAAATACAAATACAGATCGAGAGAAGAAGAGACATCTTGATTGGCAAAAGCGCTATAACATCATAC
TGGGAATAGCTCGTGGTCTTCTTTATCTTCACGAGGATTCACAGTTGCGAATCATTCATCGAGACATTAAAGCAAACAACATTTTGCTTGAGGAGCGATTCAATCCTAAAATAGCAGACTTTGGGTTAGCAAGACTGTTTCCTGAAGACAAAACTCATATCCAAACAAGAGTTGCAGGGACATAGTAAGATCATTTCCCT
CTACCCTTCTCTAATGCAATTTGTTAACAGTTAGAGCATTCTGCAATCCTGTGCTACAATTTGTTAAGGGTTTCTCATTGGAGTATGTAGCGGTTACATAGCGCCAGAGTATGCAATGCGGGGGCAACTATCGGTGAAAGCTGATGTCTATAGCTTTGGAGTGTTAATCCTTGAGATTGTGAGTGGAAGAAAAAGCAGTG
ATATGAAATTTCCCCAAGAAATGCAAAGCCTATTAGAATGGACATGGAGATTATACACGCAAGGGTGTCTTCTGGATATGATTGATTCAACAGTAACCGAAACATGCCGACAGGAGGAAGCTGTAAGATGCATTCACGTTGCCCTTCTATGCACACAACCGGATTCAGGCATCCGTCCGGCTATGTCTAGTGTTATACTG
ATGATCTCCAGCTCTTCCGTAACATTACCAAATCCAACAACGCCAGCATTTGTGAAAAGTAGTGAGAGCAACCTGGGAGGATCCACAGCCGGCAGCTATGGTAGTGGGATTCACAAGCCACGGTCGCTTGCCACGACATCATCTGTGTCGTCTGGCTCTACGCCTTTGGTTCCTTCTATAAATAATGTCACCGTCACTAT
CTTGGAAGATAGGTAGGCGGGTAATCCTCTTGGTTTACAGTTAAAAAAATAGGTTTTCGACGATATCAGAGACAAATAAATGTACTGGGTTAAGAGATTGAAATCGTTTTCTTGAAGTTCTGGTTTATTGTAATAATTTTCGGTTTCTGGTAATCCAGCGGTTTCTTGAAGTTCTTCGATATCTTAAATTCAAAATTTTA
GCAAGAATTTTGGCCTTGAAAATAGAATACGATGG