NA ----> NA
Intron 1 GTACGGATAT ... TTTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.46 | 30.5 | 12 | 23 |
| A2 | 40.48 | 25 | 13 | 21 |
| A3 | 17.65 | 35 | 5 | 10 |
| A4 | 27.78 | 13 | 7 | 3 |
| A5 | 23.54 | 19.5 | 2 | 10 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 24.27 | 12.5 | 5 | 3 |
| A8 | 11.11 | 4 | 0 | 1 |
| A9 | 9.54 | 9.5 | 2 | 0 |
| A10 | 22.77 | 17 | 2 | 8 |
>TRINITY_DN126169_c0_g3_i2 from sample A1 / Example spliced isoformTTTCTCAAGAAAGATACGAACCTCCTCCAACTTTTTACCAGCCTGCTGAGCATTTCTGCGAATGGTAGACGGTCTCATCCTTTGCCCAGACTATCATTGGTAACATCAGTTACATGGTCTAGGATCCTTCTCAATCACTTGAGGGTTTGCTTTCACCAATTGCAGACGGAGTTTTTACAGTTTAGTATGGAGGTGTTTGC
ATGAGGAGAAAGGCGGAAATTTGAGGTTTACGCAGGAGTTGAAAGCTGGCCAGAACTCCCAGTTCAGAGGAAGCAGCCATACACGGCGCTAAATGGCACCCATCAGAGAAAAACCACCACTAATGTTAATTCCGCCTGGCGACCTCGGAATTCCAAGGCTTACAGTTGAAGCCCTTCGATAAAAATAAATTCAGCGGGGT
TCCGTGGAATAGAGATTTCTGATATATTGTCCAACAGAACATCTTATTCGGAGAGAAACACAGTAGCATCGGGTGACGGAGTTTTCACAATTTAGTATGGAGGTGTTTGAATGAGGTTCGGATATGTTTGGAGCTTTTCAGTCCACAACCCATTTGCTGCTTTCACCACTGTAATCTGAGTTTAGGTTATTTTCTGCAGG
AGAAAGGCGGAAATTTGAGGGAGTTGAAAGCTGACCAGAACGCCCAGTTCAGAGGAAGTAGCCATACACTGTGCTAAATGGCATCCATCAGAGAAAAACCACCACCAATGTTAATTCCGGAACTTGGAAGCTCTGACAATTCATTTTGCAGATCATGTATTGTAAATAATGTTGGTCATCGAGAAATTCTACAGCACAAC
ATTAGTGCCCCACATATAAAGAAACTGCGAGCACAAATCCGTTTGCGATGTTACTGTATGGTTTGTTCAGTAAATTTGTTAAATATAAAAGCTGCAGAAGCTCATATCCAAGATTCTAGGCATGAACGGTGCATGAGCCATGGTTTCAAGGTAGCAAAATTTGCTGACAAGACATACAAGTGCCCTCCTTGTGGCATTGC
ATTCAACTGCAGTATTGCTTTGGAGTTACATCTTGTGATGTCACACAAGGTCACATTCTCAACAGAGAACTTGCCAGAATTGACTGGGGTCATTAAGCTGCTTTCTGGCTCATCAAGTGATTGCTCCAAAGTTGGCATAAATCTGGAATGCCTTTTGTGCCAAGTAAAATGTGAAGCCATAGATGATTATGTTCTGCATC
TGTTTTCCAGTGCGCATATTAAGGCCTTGAGAACATCAACTTGCCTAGTTTGTGAAAAAGAGTTCATCCATGTGACTGACCGAGAGAGCCATTTGCATGCATGTAAACACAAAGTTCAGTTGCAAAAATTTTGTTTAAGCAACAGGCTCAAGAAGGTGAAGGATACGGTACAAGTAGAGAACATTGGATATTTATGCACG
TATTGTATGATATGGTGCAAAAGCTGGCCCTGCTTTATGCTTCATATACTGGGCAGTGCTCACAACTTATATGCTGAGATGCAAGATCAAAAACATACAAATAAAATAGTACTGACTGGGTTGCAAGAACAAGAAAAGCAAGTGGAAGTTGTTCCAGATACTCCTTCCCCACTGTTATCTGATCAGAACTGGAAGAGGTG
GTTGGATTGGTCAGCTGGCATATCTGCATGGTGTCTTGTTTGTGAGGAAATGCTCTCAACCCCTGAGGTACTTGAAAAGCACTTGGAGAGTCATCATGGCTTGCAAATTATGTCTGTGAGAAGGAGACGACATTTTCTAGATTCTGCATCTGAAGCAGGAAAAACATGTAACTATTTTGAATGTGAAGTTTGTTCTGTCA
TTTTCAAGAATGCATTTTCTCTGATAGTTCACAAAGCCCTTTGCCAGCATCATATTCAACAAGCCCTGGTGTCAAATGGTGGCATTTTTTGTCGTTGTTTTGATTGTGGAATGCGAGGAAGTAGAGCTTTAGAGAAAACTAAATTGCCAAAAGTTGACTCTGCAAGTTTTGGGGGTAGTGATTTAGAGGAGAATATGGCC
AGTGTCAAAAATCATTTTACTAAGGGGTGCATTTCAGAGGCCAACAATGAAAGTTCTGACAAGAGTCCCAATAGTGGTGAATGCCAAACTAATACAGAAGAGAAGGCTGAAAATGATGCTAATCATGGAACGGCCAACAATGAAATTTCTGACAAGAGTCCCAACAGTGGTGAATGCCAGACTATTAAAGAAGAGAAGGC
TGAAAATGATGCTAATCATGGAACGGCCAACAATGAAAGTTCTGACAAGAGTCCCAACAGTGGTGAATGCCAGACTATTAAAGAAGAGAAGGCTGAAAATGATGCTAATCATGGAACTATGGAACAATATCTAGAACAACCATGTGATTGTCAGGATAAGAATATGACTATCCATCACGGCCCAATTCAAAGCGGCAATG
CCCCTGAAATGGTCCCTATAGTGATTGCTGCTGCCCTACCT
>TRINITY_DN126169_c0_g3_i3 from sample A1 / Example unspliced isoform:TTTCTCAAGAAAGATACGAACCTCCTCCAACTTTTTACCAGCCTGCTGAGCATTTCTGCGAATGGTAGACGGTCTCATCCTTTGCCCAGACTATCATTGGTAACATCAGTTACATGGTCTAGGATCCTTCTCAATCACTTGAGGGTTTGCTTTCACCAATTGCAGACGGAGTTTTTACAGTTTAGTATGGAGGTGTTTGC
ATGAGgtacggatatgttcagagcttttcagtccacaatccatttgcttctttcaccgctgtaacctgagtttaggtcgttttctgcagGAGAAAGGCGGAAATTTGAGGTTTACGCAGGAGTTGAAAGCTGGCCAGAACTCCCAGTTCAGAGGAAGCAGCCATACACGGCGCTAAATGGCACCCATCAGAGAAAAACCA
CCACTAATGTTAATTCCGCCTGGCGACCTCGGAATTCCAAGGCTTACAGTTGAAGCCCTTCGATAAAAATAAATTCAGCGGGGTTCCGTGGAATAGAGATTTCTGATATATTGTCCAACAGAACATCTTATTCGGAGAGAAACACAGTAGCATCGGGTGACGGAGTTTTCACAATTTAGTATGGAGGTGTTTGAATGAGG
TTCGGATATGTTTGGAGCTTTTCAGTCCACAACCCATTTGCTGCTTTCACCACTGTAATCTGAGTTTAGGTTATTTTCTGCAGGAGAAAGGCGGAAATTTGAGGGAGTTGAAAGCTGACCAGAACGCCCAGTTCAGAGGAAGTAGCCATACACTGTGCTAAATGGCATCCATCAGAGAAAAACCACCACCAATGTTAATT
CCGGAACTTGGAAGCTCTGACAATTCATTTTGCAGATCATGTATTGTAAATAATGTTGGTCATCGAGAAATTCTACAGCACAACATTAGTGCCCCACATATAAAGAAACTGCGAGCACAAATCCGTTTGCGATGTTACTGTATGGTTTGTTCAGTAAATTTGTTAAATATAAAAGCTGCAGAAGCTCATATCCAAGATTC
TAGGCATGAACGGTGCATGAGCCATGGTTTCAAGGTAGCAAAATTTGCTGACAAGACATACAAGTGCCCTCCTTGTGGCATTGCATTCAACTGCAGTATTGCTTTGGAGTTACATCTTGTGATGTCACACAAGGTCACATTCTCAACAGAGAACTTGCCAGAATTGACTGGGGTCATTAAGCTGCTTTCTGGCTCATCAA
GTGATTGCTCCAAAGTTGGCATAAATCTGGAATGCCTTTTGTGCCAAGTAAAATGTGAAGCCATAGATGATTATGTTCTGCATCTGTTTTCCAGTGCGCATATTAAGGCCTTGAGAACATCAACTTGCCTAGTTTGTGAAAAAGAGTTCATCCATGTGACTGACCGAGAGAGCCATTTGCATGCATGTAAACACAAAGTT
CAGTTGCAAAAATTTTGTTTAAGCAACAGGCTCAAGAAGGTGAAGGATACGGTACAAGTAGAGAACATTGGATATTTATGCACGTATTGTATGATATGGTGCAAAAGCTGGCCCTGCTTTATGCTTCATATACTGGGCAGTGCTCACAACTTATATGCTGAGATGCAAGATCAAAAACATACAAATAAAATAGTACTGAC
TGGGTTGCAAGAACAAGAAAAGCAAGTGGAAGTTGTTCCAGATACTCCTTCCCCACTGTTATCTGATCAGAACTGGAAGAGGTGGTTGGATTGGTCAGCTGGCATATCTGCATGGTGTCTTGTTTGTGAGGAAATGCTCTCAACCCCTGAGGTACTTGAAAAGCACTTGGAGAGTCATCATGGCTTGCAAATTATGTCTG
TGAGAAGGAGACGACATTTTCTAGATTCTGCATCTGAAGCAGGAAAAACATGTAACTATTTTGAATGTGAAGTTTGTTCTGTCATTTTCAAGAATGCATTTTCTCTGATAGTTCACAAAGCCCTTTGCCAGCATCATATTCAACAAGCCCTGGTGTCAAATGGTGGCATTTTTTGTCGTTGTTTTGATTGTGGAATGCGA
GGAAGTAGAGCTTTAGAGAAAACTAAATTGCCAAAAATTGAATGTGCAAGTTTTGGGGGTAGTGATTTAGAGGAGAATATGGCCAGTGTCAAAAATCATTTTACTAAGGGGTGCGATTCAGAGGCCAACAATGAAAGTTCTGACAAGAGTCCCAACAGTGGTGAATGCCAGACTATTAAAGGAGAGAAGGAAGAGAAGCC
TGGAAATGATGCTAATCATGGAACGGCCAACAATGAAAGTTCTGACAAGAGTCCCAACAGTGGTGAATGCCAGACTATTACAGAAGAGAAGGCTGAAAATGATGCTAATCATGGAACGGCCAACAATGAAATTTCTGACAAGAGTCCCAACAGTGGTGAATGCCAGACTATTAAAGAAGAGAAGGCTGAAAATGATGCTA
ATCATGGAACGGCCAACAATGAAAGTTCTGACAAGAGTCCCAACAGTGGTGAATGCCAGACTATTAAAGAAGAGAAGGCTGAAAATGATGCTAATCATGGAACTATGGAACA