NA ----> NA
Intron 1 GTACGTCCAA ... CAGGCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 20 | 4 | 2 | 0 |
| A4 | 11.43 | 2 | 0 | 0.6 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 30.87 | 13 | 4 | 7.7 |
| A7 | 39.33 | 30.3 | 19 | 20.3 |
| A8 | 34.85 | 51.7 | 24 | 31.4 |
| A9 | 34.46 | 36.4 | 16.4 | 22 |
| A10 | 43.12 | 41.6 | 28.6 | 34.4 |
>TRINITY_DN47180_c1_g1_i30 from sample A10 / Example spliced isoformCGACATCGAGTCTGAAGTATTTGAGCTGTGATTTCTGTATCTGAAGTAGGGAGGTCTTTCGTTTCTCATTTTCTCTGAAGTTGGCGCAGACTTCAGGTTCGTTTGTTAGATTCACCGGATTTTCCTAAATATGATTCACCGGATTCACCGGATTTTCGACAGGTGTCCATTTCATATCTCATGGTGAATATTTTGCTGGA
ACTTCTTCCTTTAGATTTGGAGGTGCGGTTATCTTTGATTTTACTG
>TRINITY_DN47180_c1_g1_i17 from sample A10 / Example unspliced isoform:TTGTTTTGGTTTATTTGAGCTGTGATTTCTGTATCTGAAGTAGGGAGGTCTTTCGTTTCTCATTTTCTCTGAAGTTGGCGCAGACTTCAGGTTCGTTTGTTAGgtacgtccaatgtcaggcttcagATTCACCGGATTTTCCTAAATATGATTCACCGGATTCACCGGATTTTCGACAGGTGTCCATTTCATATCTCATG
GTGAATATTTTGCTGGAACTTCTTCCTTTAGATTTGGAGGATATATAGCAGAACCGAAGATTGAGATTAGTACACGGGAAACTTATGGGAATGGAGGAGCCTGATAGGTGATATTTTTGGTGGATTACCTAGTAAGATTTTGCAGCAGTAAGAATTTTTTTATGTTCCAGATGAAATTTAAATAAATTATTTTTATTTCG
ATTTCAGATTGCTGTAGGAAATCACAAGGGTTTACTGTTATTTCGATTTGAGAGTGAAAGGGAATTTCAATCCAGTGGTAATTCCAGATAAAGTTAGTTTGCATTTAATCTCTCCGGTAGTTTTTCTTGGTTATTGATTTTGACATAGACGCTAGGTTGGTTTGTTTGGTTAGGTTATTTATCTCATTTATATATAATGA
GAATGGAACAGAGGTTGATCCTTATTAAATCTTTGTTTGCCGTGGTTGCGAAGATGAAATAAAGAGAGACCATTAAAAATCAGACAAGATTGAATTGAATCAGGTAGATATACAATTTCTTCAAAGTTTTTATTAAATGGTTAATCTATAGAAAATAGCTAACCTTTAGGTTATATTGCTCTTCTTCAAAGTTTTTATTA
AATGGTTAATCTATAGAAAATAGCTAACCTTTAGGTTATATTGCTCT
Intron 2 GTTTGTTTTG ... GTTGGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 90.77 | 1 | 3 | 16.7 |
| A2 | 100 | 0 | 4.3 | 8 |
| A3 | 72.41 | 4 | 1 | 20 |
| A4 | 72.22 | 5 | 6 | 20 |
| A5 | 77.78 | 1 | 2 | 5 |
| A6 | 57.63 | 6 | 5.3 | 11 |
| A7 | 70.65 | 18 | 40.7 | 46 |
| A8 | 68 | 17.7 | 33 | 42 |
| A9 | 56.62 | 24 | 20.7 | 42 |
| A10 | 55.77 | 23 | 19 | 39 |
>TRINITY_DN43530_c0_g1_i2 from sample A8 / Example spliced isoformTAATTTCTTTTGCAGTTGCTTTGCTGGTTAGTTTTGACTGTTAATTGATTTGAAACGGGTAAAAATGTGGTTCGACATCGAGGAAGAAGATAACATGAGATAATTCAGAGATAAGGTACGTCCATTGTCAGTCAAGGATGGTTCGCCTCATTCTTCCGGAGTTGAATTTGGGGTTAACCCACTTCAAGGTATGGCTATGG
GCTAAAATGATTTTATAAAAGTCTGATTCACCAGATTTCACTAAATACAATTCTCGCTAAGAGGGTGAGTTCTGTGCAATTTTTTCCTGTGATTTGCGTTGTTAGAGGTTTCTTTTAATATATAGCAGAACCAAAGATCGAGATTAGTGCACGGGAAACTTATGGGAATGAACCGAAGATTGAGATTAGTACACGGGAAA
CTTATGGGAATGGAGGAGCCTGATATTTTTTGTGGATTACCTAGTAAGATTTGCAGCAGTAA
>TRINITY_DN43530_c0_g1_i11 from sample A8 / Example unspliced isoform:TAATTTCTTTTGCAGTTGCTTTGCTGGTTAGTTTTGACTGTTAATTGATTTGAAACGGGTAAAAATGTGGTTCGACATCGAGGAAGAAGATAACATGAGATAATTCAGAGATAAGgtttgttttggtttatttgagctgtgatttctgtatccatcttataaatgatttgcataaagatttgcagaagaggcgacgaaga
ataattcattttggctctcagaagtaatattttgtcaagcaaattgtcgaggagaggatatgagatgacatcatcgtggctgcgaagtttctcattttgtgtgaagttggaacagGTACGTCCATTGTCAGTCAAGGATGGTTCGCCTCATTCTTCCGGAGTTGAATTTGGGGTTAACCCACTTCAAGGTATGGCTATGG
GCTAAAATGATTTTATAAAAGTCTGATTCACCAGATTTCACTAAATACAATTCTCGCTAAGAGGGTGAGTTCTGTGCAATTTTTTCCTGTGATTTGCGTTGTTAGAGGTTTCTTTTAATATATAGCAGAACCAAAGATCGAGATTAGTGCACGGGAAACTTATGGGAATGAACCGAAGATTGAGATTAGTACACGGGAAA
CTTATGGGAATGGAGGAGCCTGATATTTTTTGTGGATTACCTAGTAAGATTTGCAGCAGTAA