sp|A9QM73|SMG7_ARATH ----> Nonsense-mediated mRNA decay factor SMG7


Intron 1 GTTTGTACCT ... GCTAGAGAAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A144.33271825
A246.94262125
A348.8322635
A445.9520628
A55012222
A646.0317722
A749.51261140
A840211018
A940513632
A1046.48381353



>TRINITY_DN43990_c3_g2_i1 from sample A9 / Example spliced isoform
TTTCCTGCCATCGGTTGTTCACATATTTGGGGGATCTGGCAAGATATAAAGAGCTCCATGCTGTGCGAAATCCCAACAATCGCGACTGGACTATTGCTGCAAATTATTACAAGCAAGCTGCAGCTCTTTGCCCCTGCAGCGGTAACCCACATAACCAGAAAAGACCACATGTTTGTAAGGTTTCTCTTCTAGTGGAGGGA
TCAGGACAACTACCTTTTCTTATTGCTGCTGCTGAGAGAGAAGGTTTGAATTATAGAAGTTCATCTCCTTTGGACTGCCATCGAAATATTTCCCAAACAGCTTCAGGAGAAGAATCAAATGCTGTGGCCATCGAGGAGCTATGGGAATGTTTTCAAGTTCATTTCATTGAACTTCTTGGGGCCATTTTTACAAAATGCAG
TCTTAAAGAACTGGAGTATGCAGTATCTAAGTCGGAGAATGTGCTGCTAGATTTGTTCAGCCATCATATAAAAGAGCTGGAGACGACATTTCCACCCAAGAGATCACACCCAGTGGGAAGCAGCACTGTGAGGAATATACCCATGCTTGAAATTATAGTGATTCTCATCTTTCTTATCCATGACACACATACACAAGTTC
AGAATGCTGCCACCACCTCAGGAACCTCATTTGCAACCATTTTGTTGAGATTTTGTAGTCTTGTTGTATCATTGCTAGTTAAAAAGGTTGCACAATCTGATGAAAATGCACTGAATTTTCTATTGCCTGGAGTTATTGTGTTCATGGAGTGGGTTGTGTCTCAACCATCTTTTCTGAAAGATATCAAGGTTGATGCAATC
ATTGCAAAAGGTCTCTGTGAATTGAAGCAGGAATGCACATTGCTTAGAAGACACTTCTTAAAGAGACAAACATGTCCAGGGAAGATTGCACCATCTGATGTTGCAGATGTAACGTCCAGAAGTACTTGTCAAACAGCATTATGGGAAGATTATGAATTGCTGGGCTTTAGTCCGCTTTCTCTTGCTCATCAGGATCTTGA
TTTTTCCAATCTGTGTATGGCAAGGGATAGTGAAGGGACTTTCCAGGTTCAGCTACAGAGGTTCATGGGTGCTTTGAATGCTTTCAATTACTTCGTCCACAGTGAAGTAGTTTACTCAGACTCTGGCAGCAGAGATGAGGAAATAACATGCAATTCTAAAGGAGATGCCATTTGTGCTGGCCACATAGACAATTTAAAAG
AAACGACTAACCTGTCATCTTCTCTGAGGGACTGGGTTCAAGCTTCAAATAAAGATTTGCCTTCTGCTAATGTTCCATTGGTTTCTGATCAGGAACGGATTCAGGATGTCCATGAAAACTCTTCTACATTCCATTTGACAATTGAAGAAGATTACCAGGGCTCAAAAGTGGATTGCTCAGTCTCGTTAGAAAAATCTGTA
AATGAGTCGCCTGAACATTCAAAGAGGCAATCAAGCAGTGCACTGGCTCTGGAGGAATCTTTTTTGGATTCTCCAGTTCATTCTCCTCAACGTGGCAGATGTCCAGGAGATGGTAAGGAATCAAATTTCCCTTTGGATGTTACCGATGATTGTGTCTTTCACACAAGGAAAGTGTCTGTAGAGGAAGCACAAGAAGCATC
TTTTTCAAATGGTAACACGAAAGACTTTGTTACGGTTTGTCATGGAGATAAAATTTGTGATCATGAAGGTACAGCTGTTCCGAATAATTCTTTTTCCCATTCTCCAGACTATCCGACAAGCCCAGTACGATATCCAAATGATGCAAAACAATTGAAGGTTTTGGATATAACTAAAGAAGCCTTACAAACTGGACAAGAAC
CTTTTAAAAGAGGACTGGGAGTTTATTTTCCTAACAATTATTTGAAACATCCTGTTTCCTCTGGGCCAGAAATTAATATTTTTGAAAACGATGGTAAATGCTCAAATAAAGCTGACACAAAGATTACTACTACAAACAGTTCTGTTGGTCAAAGTTCATCTTATTTAACTCAGTGTACTTCTTGTAACACACATTTTAAA
GCGAAGAGACAACCTGCTGATGACCTTCAGTGGCTTGATGACTATACACATATTATACCCGCAGGTCTTAAAGGAACTAACAGATGGTTGTACCGTAACTTTCCAATATTCCATTCTGGTAACAAGCGCATGAGGGAAGATGTTGGCAATTATGAGATGGTTTCCAATTATGCAGAGATGACTCATTACAAGTCTAAGAA
CCCTTTTGTAAGAACATTAGATGACAAATTTCATCAAGGCACACACAAATGATTAGTTTGGATACAATGTGAAAATGTAATACTCAGTTCTGAGTTTCAATCTCTTTGGTGCTGCTATCGTTACATCTCTATATACAAGAAAAAAAACGAGGTTCTAATGATGTGGGTGCCTTGCTGCATTGTTACATCTCCATATACAA
GAAAAAAGAATGAGATTCTAATGATGTGGGTATCTGGTTGATCACCTGAGATTTTTTAGTTTTGGTTCAGGAACTATATTTAAAAGGTTCTGAATTTAAATTTAGCCTTATCATTGTTTCTTATAATTGTTTTATAGACAAGCAAATATACTCTCAAAAGGCGATAGTTCATTGTGTATTTACAATCTGTATGCACGAGA
GATATTATTTTAATTCAAAAAGCACCACTGACAATTATGGATTAAAAA


>TRINITY_DN43990_c3_g2_i2 from sample A9 / Example unspliced isoform:
TTTCCTGCCATCGGTTGTTCACATATTTGGGGGATCTGGCAAGATATAAAGAGCTCCATGCTGTGCGAAATCCCAACAATCGCGACTGGACTATTGCTGCAAATTATTACAAGCAAGCTGCAGCTCTTTGCCCCTGCAGCGGTAACCCACATAACCAGgtttgtacctaccctctaacaagggccaacttgttccaagag
tttgactagcatctgagaggcacagtgttttctgaaagtaaattcttctgagtataaatagcaagggtctcacactctagttagctgttttggcgacatacacaggggatacactgagtgcgatatatcattattgtcgtagccttgctgttgatgcaccatttataacagcccgggaaaacattattttgttgctagag
aag
AAAAGACCACATGTTTGTAAGGTTTCTCTTCTAGTGGAGGGATCAGGACAACTACCTTTTCTTATTGCTGCTGCTGAGAGAGAAGGTTTGAATTATAGAAGTTCATCTCCTTTGGACTGCCATCGAAATATTTCCCAAACAGCTTCAGGAGAAGAATCAAATGCTGTGGCCATCGAGGAGCTATGGGAATGTTTTCA
AGTTCATTTCATTGAACTTCTTGGGGCCATTTTTACAAAATGCAGTCTTAAAGAACTGGAGTATGCAGTATCTAAGTCGGAGAATGTGCTGCTAGATTTGTTCAGCCATCATATAAAAGAGCTGGAGACGACATTTCCACCCAAGAGATCACACCCAGTGGGAAGCAGCACTGTGAGGAATATACCCATGCTTGAAATTA
TAGTGATTCTCATCTTTCTTATCCATGACACACATACACAAGTTCAGAATGCTGCCACCACCTCAGGAACCTCATTTGCAACCATTTTGTTGAGATTTTGTAGTCTTGTTGTATCATTGCTAGTTAAAAAGGTTGCACAATCTGATGAAAATGCACTGAATTTTCTATTGCCTGGAGTTATTGTGTTCATGGAGTGGGTT
GTGTCTCAACCATCTTTTCTGAAAGATATCAAGGTTGATGCAATCATTGCAAAAGGTCTCTGTGAATTGAAGCAGGAATGCACATTGCTTAGAAGACACTTCTTAAAGAGACAAACATGTCCAGGGAAGATTGCACCATCTGATGTTGCAGATGTAACGTCCAGAAGTACTTGTCAAACAGCATTATGGGAAGATTATGA
ATTGCTGGGCTTTAGTCCGCTTTCTCTTGCTCATCAGGATCTTGATTTTTCCAATCTGTGTATGGCAAGGGATAGTGAAGGGACTTTCCAGGTTCAGCTACAGAGGTTCATGGGTGCTTTGAATGCTTTCAATTACTTCGTCCACAGTGAAGTAGTTTACTCAGACTCTGGCAGCAGAGATGAGGAAATAACATGCAATT
CTAAAGGAGATGCCATTTGTGCTGGCCACATAGACAATTTAAAAGAAACGACTAACCTGTCATCTTCTCTGAGGGACTGGGTTCAAGCTTCAAATAAAGATTTGCCTTCTGCTAATGTTCCATTGGTTTCTGATCAGGAACGGATTCAGGATGTCCATGAAAACTCTTCTACATTCCATTTGACAATTGAAGAAGATTAC
CAGGGCTCAAAAGTGGATTGCTCAGTCTCGTTAGAAAAATCTGTAAATGAGTCGCCTGAACATTCAAAGAGGCAATCAAGCAGTGCACTGGCTCTGGAGGAATCTTTTTTGGATTCTCCAGTTCATTCTCCTCAACGTGGCAGATGTCCAGGAGATGGTAAGGAATCAAATTTCCCTTTGGATGTTACCGATGATTGTGT
CTTTCACACAAGGAAAGTGTCTGTAGAGGAAGCACAAGAAGCATCTTTTTCAAATGGTAACACGAAAGACTTTGTTACGGTTTGTCATGGAGATAAAATTTGTGATCATGAAGGTACAGCTGTTCCGAATAATTCTTTTTCCCATTCTCCAGACTATCCGACAAGCCCAGTACGATATCCAAATGATGCAAAACAATTGA
AGGTTTTGGATATAACTAAAGAAGCCTTACAAACTGGACAAGAACCTTTTAAAAGAGGACTGGGAGTTTATTTTCCTAACAATTATTTGAAACATCCTGTTTCCTCTGGGCCAGAAATTAATATTTTTGAAAACGATGGTAAATGCTCAAATAAAGCTGACACAAAGATTACTACTACAAACAGTTCTGTTGGTCAAAGT
TCATCTTATTTAACTCAGTGTACTTCTTGTAACACACATTTTAAAGCGAAGAGACAACCTGCTGATGACCTTCAGTGGCTTGATGACTATACACATATTATACCCGCAGGTCTTAAAGGAACTAACAGATGGTTGTACCGTAACTTTCCAATATTCCATTCTGGTAACAAGCGCATGAGGGAAGATGTTGGCAATTATGA
GATGGTTTCCAATTATGCAGAGATGACTCATTACAAGTCTAAGAACCCTTTTGTAAGAACATTAGATGACAAATTTCATCAAGGCACACACAAATGATTAGTTTGGATACAATGTGAAAATGTAATACTCAGTTCTGAGTTTCAATCTCTTTGGTGCTGCTATCGTTACATCTCTATATACAAGAAAAAAAACGAGGTTC
TAATGATGTGGGTGCCTTGCTGCATTGTTACATCTCCATATACAAGAAAAAAGAATGAGATTCTAATGATGTGGGTATCTGGTTGATCACCTGAGATTTTTTAGTTTTGGTTCAGGAACTATATTTAAAAGGTTCTGAATTTAAATTTAGCCTTATCATTGTTTCTTATAATTGTTTTATAGACAAGCAAATATACTCTC
AAAAGGCGATAGTTCATTGTGTATTTACAATCTGTATGCACGAGAGATATTATTTTAATTCAAAAAGCACCACTGACAATTATGGATTAAAAA




Intron 2 GTAACCCACA ... CACACTCTAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A134.5536195
A246.8125222
A333.3364328
A4281874
A545.45651
A624.242584
A724.2953172
A834.1527144
A941.75604310
A1035.19351911



>TRINITY_DN43990_c3_g2_i3 from sample A9 / Example spliced isoform
TTTCCTGCCATCGGTTGTTCACATATTTGGGGGATCTGGCAAGATATAAAGAGCTCCATGCTGTGCGAAATCCCAACAATCGCGACTGGACTATTGCTGCAAATTATTACAAGCAAGCTGCAGCTCTTTGCCCCTGCAGCGTTAGCTGTTTTGGCGACATACACAGGGGATACACTGAGTGCGATATATCATTATTGTCG
TAGCCTTGCTGTTGATGCACCATTTATAACAGCCCGGGAAAACATTATTTTGTTGCTAGAGAAGAAAAGACCACATGTTTGTAAGGTTTCTCTTCTAGTGGAGGGATCAGGACAACTACCTTTTCTTATTGCTGCTGCTGAGAGAGAAGGTTTGAATTATAGAAGTTCATCTCCTTTGGACTGCCATCGAAATATTTCCC
AAACAGCTTCAGGAGAAGAATCAAATGCTGTGGCCATCGAGGAGCTATGGGAATGTTTTCAAGTTCATTTCATTGAACTTCTTGGGGCCATTTTTACAAAATGCAGTCTTAAAGAACTGGAGTATGCAGTATCTAAGTCGGAGAATGTGCTGCTAGATTTGTTCAGCCATCATATAAAAGAGCTGGAGACGACATTTCCA
CCCAAGAGATCACACCCAGTGGGAAGCAGCACTGTGAGGAATATACCCATGCTTGAAATTATAGTGATTCTCATCTTTCTTATCCATGACACACATACACAAGTTCAGAATGCTGCCACCACCTCAGGAACCTCATTTGCAACCATTTTGTTGAGATTTTGTAGTCTTGTTGTATCATTGCTAGTTAAAAAGGTTGCACA
ATCTGATGAAAATGCACTGAATTTTCTATTGCCTGGAGTTATTGTGTTCATGGAGTGGGTTGTGTCTCAACCATCTTTTCTGAAAGATATCAAGGTTGATGCAATCATTGCAAAAGGTCTCTGTGAATTGAAGCAGGAATGCACATTGCTTAGAAGACACTTCTTAAAGAGACAAACATGTCCAGGGAAGATTGCACCAT
CTGATGTTGCAGATGTAACGTCCAGAAGTACTTGTCAAACAGCATTATGGGAAGATTATGAATTGCTGGGCTTTAGTCCGCTTTCTCTTGCTCATCAGGATCTTGATTTTTCCAATCTGTGTATGGCAAGGGATAGTGAAGGGACTTTCCAGGTTCAGCTACAGAGGTTCATGGGTGCTTTGAATGCTTTCAATTACTTC
GTCCACAGTGAAGTAGTTTACTCAGACTCTGGCAGCAGAGATGAGGAAATAACATGCAATTCTAAAGGAGATGCCATTTGTGCTGGCCACATAGACAATTTAAAAGAAACGACTAACCTGTCATCTTCTCTGAGGGACTGGGTTCAAGCTTCAAATAAAGATTTGCCTTCTGCTAATGTTCCATTGGTTTCTGATCAGGA
ACGGATTCAGGATGTCCATGAAAACTCTTCTACATTCCATTTGACAATTGAAGAAGATTACCAGGGCTCAAAAGTGGATTGCTCAGTCTCGTTAGAAAAATCTGTAAATGAGTCGCCTGAACATTCAAAGAGGCAATCAAGCAGTGCACTGGCTCTGGAGGAATCTTTTTTGGATTCTCCAGTTCATTCTCCTCAACGTG
GCAGATGTCCAGGAGATGGTAAGGAATCAAATTTCCCTTTGGATGTTACCGATGATTGTGTCTTTCACACAAGGAAAGTGTCTGTAGAGGAAGCACAAGAAGCATCTTTTTCAAATGGTAACACGAAAGACTTTGTTACGGTTTGTCATGGAGATAAAATTTGTGATCATGAAGGTACAGCTGTTCCGAATAATTCTTTT
TCCCATTCTCCAGACTATCCGACAAGCCCAGTACGATATCCAAATGATGCAAAACAATTGAAGGTTTTGGATATAACTAAAGAAGCCTTACAAACTGGACAAGAACCTTTTAAAAGAGGACTGGGAGTTTATTTTCCTAACAATTATTTGAAACATCCTGTTTCCTCTGGGCCAGAAATTAATATTTTTGAAAACGATGG
TAAATGCTCAAATAAAGCTGACACAAAGATTACTACTACAAACAGTTCTGTTGGTCAAAGTTCATCTTATTTAACTCAGTGTACTTCTTGTAACACACATTTTAAAGCGAAGAGACAACCTGCTGATGACCTTCAGTGGCTTGATGACTATACACATATTATACCCGCAGGTCTTAAAGGAACTAACAGATGGTTGTACC
GTAACTTTCCAATATTCCATTCTGGTAACAAGCGCATGAGGGAAGATGTTGGCAATTATGAGATGGTTTCCAATTATGCAGAGATGACTCATTACAAGTCTAAGAACCCTTTTGTAAGAACATTAGATGACAAATTTCATCAAGGCACACACAAATGATTAGTTTGGATACAATGTGAAAATGTAATACTCAGTTCTGAG
TTTCAATCTCTTTGGTGCTGCTATCGTTACATCTCTATATACAAGAAAAAAAACGAGGTTCTAATGATGTGGGTGCCTTGCTGCATTGTTACATCTCCATATACAAGAAAAAAGAATGAGATTCTAATGATGTGGGTATCTGGTTGATCACCTGAGATTTTTTAGTTTTGGTTCAGGAACTATATTTAAAAGGTTCTGAA
TTTAAATTTAGCCTTATCATTGTTTCTTATAATTGTTTTATAGACAAGCAAATATACTCTCAAAAGGCGATAGTTCATTGTGTATTTACAATCTGTATGCACGAGAGATATTATTTTAATTCAAAAAGCACCACTGACAATTATGGATTAAAAA


>TRINITY_DN43990_c3_g2_i2 from sample A9 / Example unspliced isoform:
TTTCCTGCCATCGGTTGTTCACATATTTGGGGGATCTGGCAAGATATAAAGAGCTCCATGCTGTGCGAAATCCCAACAATCGCGACTGGACTATTGCTGCAAATTATTACAAGCAAGCTGCAGCTCTTTGCCCCTGCAGCGgtaacccacataaccaggtttgtacctaccctctaacaagggccaacttgttccaagag
tttgactagcatctgagaggcacagtgttttctgaaagtaaattcttctgagtataaatagcaagggtctcacactctag
TTAGCTGTTTTGGCGACATACACAGGGGATACACTGAGTGCGATATATCATTATTGTCGTAGCCTTGCTGTTGATGCACCATTTATAACAGCCCGGGAAAACATTATTTTGTTGCTAGAG
AAGAAAAGACCACATGTTTGTAAGGTTTCTCTTCTAGTGGAGGGATCAGGACAACTACCTTTTCTTATTGCTGCTGCTGAGAGAGAAGGTTTGAATTATAGAAGTTCATCTCCTTTGGACTGCCATCGAAATATTTCCCAAACAGCTTCAGGAGAAGAATCAAATGCTGTGGCCATCGAGGAGCTATGGGAATGTTTTCA
AGTTCATTTCATTGAACTTCTTGGGGCCATTTTTACAAAATGCAGTCTTAAAGAACTGGAGTATGCAGTATCTAAGTCGGAGAATGTGCTGCTAGATTTGTTCAGCCATCATATAAAAGAGCTGGAGACGACATTTCCACCCAAGAGATCACACCCAGTGGGAAGCAGCACTGTGAGGAATATACCCATGCTTGAAATTA
TAGTGATTCTCATCTTTCTTATCCATGACACACATACACAAGTTCAGAATGCTGCCACCACCTCAGGAACCTCATTTGCAACCATTTTGTTGAGATTTTGTAGTCTTGTTGTATCATTGCTAGTTAAAAAGGTTGCACAATCTGATGAAAATGCACTGAATTTTCTATTGCCTGGAGTTATTGTGTTCATGGAGTGGGTT
GTGTCTCAACCATCTTTTCTGAAAGATATCAAGGTTGATGCAATCATTGCAAAAGGTCTCTGTGAATTGAAGCAGGAATGCACATTGCTTAGAAGACACTTCTTAAAGAGACAAACATGTCCAGGGAAGATTGCACCATCTGATGTTGCAGATGTAACGTCCAGAAGTACTTGTCAAACAGCATTATGGGAAGATTATGA
ATTGCTGGGCTTTAGTCCGCTTTCTCTTGCTCATCAGGATCTTGATTTTTCCAATCTGTGTATGGCAAGGGATAGTGAAGGGACTTTCCAGGTTCAGCTACAGAGGTTCATGGGTGCTTTGAATGCTTTCAATTACTTCGTCCACAGTGAAGTAGTTTACTCAGACTCTGGCAGCAGAGATGAGGAAATAACATGCAATT
CTAAAGGAGATGCCATTTGTGCTGGCCACATAGACAATTTAAAAGAAACGACTAACCTGTCATCTTCTCTGAGGGACTGGGTTCAAGCTTCAAATAAAGATTTGCCTTCTGCTAATGTTCCATTGGTTTCTGATCAGGAACGGATTCAGGATGTCCATGAAAACTCTTCTACATTCCATTTGACAATTGAAGAAGATTAC
CAGGGCTCAAAAGTGGATTGCTCAGTCTCGTTAGAAAAATCTGTAAATGAGTCGCCTGAACATTCAAAGAGGCAATCAAGCAGTGCACTGGCTCTGGAGGAATCTTTTTTGGATTCTCCAGTTCATTCTCCTCAACGTGGCAGATGTCCAGGAGATGGTAAGGAATCAAATTTCCCTTTGGATGTTACCGATGATTGTGT
CTTTCACACAAGGAAAGTGTCTGTAGAGGAAGCACAAGAAGCATCTTTTTCAAATGGTAACACGAAAGACTTTGTTACGGTTTGTCATGGAGATAAAATTTGTGATCATGAAGGTACAGCTGTTCCGAATAATTCTTTTTCCCATTCTCCAGACTATCCGACAAGCCCAGTACGATATCCAAATGATGCAAAACAATTGA
AGGTTTTGGATATAACTAAAGAAGCCTTACAAACTGGACAAGAACCTTTTAAAAGAGGACTGGGAGTTTATTTTCCTAACAATTATTTGAAACATCCTGTTTCCTCTGGGCCAGAAATTAATATTTTTGAAAACGATGGTAAATGCTCAAATAAAGCTGACACAAAGATTACTACTACAAACAGTTCTGTTGGTCAAAGT
TCATCTTATTTAACTCAGTGTACTTCTTGTAACACACATTTTAAAGCGAAGAGACAACCTGCTGATGACCTTCAGTGGCTTGATGACTATACACATATTATACCCGCAGGTCTTAAAGGAACTAACAGATGGTTGTACCGTAACTTTCCAATATTCCATTCTGGTAACAAGCGCATGAGGGAAGATGTTGGCAATTATGA
GATGGTTTCCAATTATGCAGAGATGACTCATTACAAGTCTAAGAACCCTTTTGTAAGAACATTAGATGACAAATTTCATCAAGGCACACACAAATGATTAGTTTGGATACAATGTGAAAATGTAATACTCAGTTCTGAGTTTCAATCTCTTTGGTGCTGCTATCGTTACATCTCTATATACAAGAAAAAAAACGAGGTTC
TAATGATGTGGGTGCCTTGCTGCATTGTTACATCTCCATATACAAGAAAAAAGAATGAGATTCTAATGATGTGGGTATCTGGTTGATCACCTGAGATTTTTTAGTTTTGGTTCAGGAACTATATTTAAAAGGTTCTGAATTTAAATTTAGCCTTATCATTGTTTCTTATAATTGTTTTATAGACAAGCAAATATACTCTC
AAAAGGCGATAGTTCATTGTGTATTTACAATCTGTATGCACGAGAGATATTATTTTAATTCAAAAAGCACCACTGACAATTATGGATTAAAAA