sp|O22993|FTSI1_ARATH ----> Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic
Intron 1 GTAAGATTTC ... GAATTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.38 | 22 | 5 | 4 |
| A2 | 31.82 | 15 | 3 | 7 |
| A3 | 19.23 | 21 | 0 | 5 |
| A4 | 0 | 4 | 0 | 0 |
| A5 | 25 | 9 | 1 | 3 |
| A6 | 37.5 | 5 | 0 | 3 |
| A7 | 17.65 | 14 | 0 | 3 |
| A8 | 0 | 6 | 0 | 0 |
| A9 | 36.67 | 19 | 0 | 11 |
| A10 | 25.81 | 23 | 0 | 8 |
>TRINITY_DN119264_c1_g1_i2 from sample A2 / Example spliced isoformGAAAAAGCGCAGAGAGTTTTAATTCTTAGTCATCGCGCGTGTGAATACTTCGTTGGGGCGACAAGGGATCAGGCGAAGTGTTGTTTGGGAGAATCCCACAGGCAGGGAGATAATCGATTGGGAGGAACGCAAGGAGTTTGCAGAAGAATTCGACGAGCCCCCCACAAGAAGAAGGGAAGCAACCCGGGACGAGAGAGCAC
ACGTAGACGCTGTAGGAAGGACGCAGGCAGATAAACGGAAAATAAGAGCCATCCCAAGCAGAGAATAATCCTGGAAAAAGAAAGAGCAGTTAATAGTAGAAAGCCTAGCCAGCGGAGAAGATTCCAATCCTCTCCGACAGGAAAGAATCCAGTTCTAACCCGACAAGCAAAGCAAAGAAGAGACTCTGTTCTGTGCCCTA
GCAGACCTTTCAGAAGGAGAATGTCCAATGCGTGAAATGCTTTGAAGGAGGTCAAAGTACATGCAAAGCTGAAATGATGTTATCTGGGCCAGTGAAATGTTTTGATGTTCAGTGTATTCCTTCCAAAGATGCCAGTCCACTTCCTCTCTTACCAGTGAACAGCATTAAAACGGGCTTCTATTTTCATGGACAGCAAAGCT
ATGGGGGCAGAGTACACTTTAGTGGTAAAACATCGATACGAATGAGCAGAACAAAGTCACACAATAGAGGCATTTTCTTTGATAAAAGAGAAATCTTTGGTCAGCTATATACTCCTATTCTAAAGGAAAGAAGATATCTTACTAAAGTGCATGCATCTTCCTCATCAACAACAAATAGAGGTGGAAGTCGAAATTCTTCA
CAGTATAAAAAAAAGAAGTCAGAAGATTATGTTAGCAGATTTTTAAGAGAAAACCCAAGTGGGATAGAACAAAAGTTTCTTATAGGAGATGAACTTTATACTTTGGAAGAAAGGGAGAAGTTGAAAACTTCAGTTCTGAAGCGAATCAAGAATGCATTAAGTGAACTTGCTATCAAATCAGTCCCAAGTGATATCCAAGC
CCAGGAGGGAATCAAGAATGCATTAAGTGAACTTAAAGGCAACTTACTCTCAAAGGATATCCAAGAGACAGAGCAAATAGAAGAGAAACATCATGAAGCACCTAGAGGGGACATTGATAAAGAGATTCCATCAAGGCCTGTTTACCTGAAAGACCTTCTAAGACAATACAAAGGTGAACTGTATGTTCCGGAAGAGGCAT
TCAAGTACCGTGCATCAGAGGTGGGTGATTTCAACAGTAGACTGAAGACATTGCCAAAAATGCACTTGAAAGACTTACTCAAGGTGATGCGGGCAAATCAGATTGAAATGCTGACATCAAGGGCTGTCCAGACTCCAGAGGGAGTTTATGTGTATCGTGACTTCATTATAGATTTGAAAGGATTTCCGGTAGAGAAGAAC
TTACAGAGAAAGAAGTGGACCATACATTTGTCAGAGAAAGAAGCACAAGCTGTTTTAGGGGAGTATTCAGGGCCACAGCGCGAAGTTGAAAGGCTATTAACGCCTTATGTAGTTCCACCATCTGTTATGCCTCATTCTGTGGCATCTTCTATCTCAAGCAGAGTGATGATTGAGCTTACAATGATAACAAGTGTAGTAAC
TGCTGCTGCATTCACAGTGGGAGGTCTTGTATCAGCAATGGTCTTTGCACTTACCGGTGTACTGTCTGTTATTGCGGTCAATTTTGTCTGGCCCGTGGCATTTTCTTTGCTTAAGGCTGTTGCTGTGCTTCTTCTAAGATGTGCAAAGACAGTGTGGAAAATGTTGGCTACAGTGGGTAGCATGGGAGGACTTCTCGGGC
GTTACCCAAGAGTTTCTGCTTTTTTAGCATCTGGTGGTTTCTGGGCATTGCTTCAGGCATTATTTTTTATTGTAGTTATAATCATAACCATGGCCATTCTTATAAGGTTTACTCTTATAAGGAGACCAAAAGATTTCAGAAAATGGGATATATGGCAAGCTATTGAGTTTGGGCAGTCAAAACCACATGCCCGAGTAGAG
GGTTCAACTGGAGTTACATTTAAAGATGTTGCAGGTATTGATGAAGTAGTAGGGGAGTTGAAAGAGTTGGTGAGATATTTGAAGAATCCAGAATTGTACACTAAAATGGGAACAAAAGCTCCTCATGGGGTACTCCTAACAGGTCCTCCTGGCTGTGGAAAGACTTTGTTGGCAAAGGCAATAGCTGGAGAAGCTGGTGT
ACCTTTCTACCAAATGGCTGGTTCTGAGTTTGTTGAAGTGCTTGTTGGAGTTGGTGCAGCTCGTGTCCGTGACCTCTTTAAAAGAGCAAAGGTAAACAAACCCTCAGTGGTCTTCATTGATGAAATCGATGCTTTGGGAGCAATGCGCCATGGAATTTCAGGTCAGAGTAATGGTGAAAAATACGATGCTGGTGCACAGG
AAAGGGAGACAACTTTGAACCAGCTTTTAATAGAGCTTGATGGATTTGACACTGGTCAGGGAGTCATATTTTTGGGTGCGACTAATCGTATGGATCTACTAGATCCTGCATTATTGCGGCCAGGCCGTTTTGATCGCAAGATTAAAGTAAGTCCTCCTGGGGCAAAGGGGCGACTGGAGATTCTTAAAGTCCATGCAAAT
AGAGTGAAGCTATCACCTTCCGTTGACCTTTCTGTTTATGCCAACAATCTACCAGGATGGTCAGGAGCAGAGCTTGCCCAGCTTCTTCAGGAGGCTGCTTTGGTGGCTGTTAGGCATGGCCATGATTCAATTCTTCAATCTGACATGAATAACGCAGTCGACAGGCTTACAATGGGGCCAGAGCGTAAAGGTATAGATCA
GATATCACCATTTCTCTGGCGGAGGGCAACAGCTGAAGTTGGCATTGCTTTGGCATCGCATCTTTTGCGGCGTGTGGAGAATGCCCGTGTTGAATGTTGTGATCGAATATCTATAATTCCTCGTGGTGAGACATTTTCACGAACTATTTTTAACCGGCTTGATGAGGAGGCTTATATTTTTGAGAGGCGACCCCAACTGC
TCCATCGAATGCAGGTAATGCTAGGGGGCAGGGCAGCTGAAGAAGTGATGTATGGACGCAATACATCGACAGTGTCATTAACATACCTCCCAGATGCATCTTGGCTCGCGCGCAAAATCATTTCTATATGGAACATGGAGAATCCCATGGTTATACATGGAGAAGCAGCACCCTGGAAACGTGATCCAAGCTTTACTGGT
CCACCTTTGAATTTTGAAGGTTCACTGTATGACGATTATGGTCTCTATGAAAAATCTGTCAACTACAATCTGGATAATGATACCGTTCTCAGGACAGAGAAATTGCTGAATGATATGTACCAGCAGATATTTAAGTTGGTACAACACTATCATGCAGCTTTGGCCAAAGCTGTTTATGTTATCATGGAAATGCAGGAGAT
TACTGGTGCTGACCTTGACATCATAATTGATCAATATCCCGCAGATACCCCTGTGCATCTTGTAGAAGAGGAGGACAATCCAGGAAGCTTGCCTCCAAGGGTGGGAGTTAAGCAAATGCTTCCTTTGGAGGCATCAGAATCGTCAACTATATCCTGGAAGAAGACCAGTCATGAAGAAGAGAAGCTTAGCTCCAAGACCG
TTACTTAGTACTTATGTATCAGAAAGCAGATGTGATTGGTTGACTGCCCTGAAAGATGATATGGAGGGTGAAATTCAGAGTGCAACAAGCGATTACGTGCAGAAAATGGAGGTGCGAGAAATTAACGAGGAATTTTTCATCTGGGACCCGAGGAATTTCTTTGCACTTGTGCCTTGTTATAGGCAAGAGAAAATTGTGCA
TTCGGAAATGCCGAGGTAATTATTTTGCTCATTTTTCAAAATAATGCCTTCATTTTGAAGATGGAAGATTAGCTTTGTAAAGCACATGAAATGTGGTTTAAAGTTAACATCATTATGTGCTGAAGGCCTATGAATTATGAAACTTTTGGCTTCAGTGGCTTCTTCCAATGTTAGTGCTATTCTATTTTTTCTGCAAAGAT
GCAAGTTCAATGATATAACTCCTCCCAAGTTCCTAGGGCCTAGGGATGTCAATACCTTTAGCGTTGTTTGGACATTGATTGGGTTAATGTGTAATCTCCAATCTCTTTGTTAAATGCACGAATTTAAGAAGTATCATTTATTTCATGTGGAAAAA
>TRINITY_DN119264_c1_g1_i4 from sample A2 / Example unspliced isoform:GAGGATGAATAGCATTTGGATTCCTGCAGGATATATGGCAAGCTATTGAGTTTGGGCAGTCAAAACCACATGCCCGAGTAGAGgtaagatttcttgtttctcattttttcctgagttgggttaatatgaagcttgcttactgttgattcttcatgttttctttttcactgatacgaatttaggttagcaagacagcttgt
tttgtttcatatatgtaattttgaattttcagGGTTCAACTGGAGTTACATTTAAAGATGTTGCAGGTATTGATGAAGTAGTAGGGGAGTTGAAAGAGTTGGTGAGATATTTGAAGAATCCAGAATTGTACACTAAAATGGGAACAAAAGCTCCTCATGGGGTACTCCTAACAGGTCCTCCTGGCTGTGGAAAGACTTTG
TTGGCAAAGGCAATAGCTGGAGAAGCTGGTGTACCTTTCTACCAAATGGCTGGTTCTGAGTTTGTTGAAGTGCTTGTTGGAGTTGGTGCAGCTCGTGTCCGTGACCTCTTTAAAAGAGCAAAGGTAAACAAACCCTCAGTGGTCTTCATTGATGAAATCGATGCTTTGGGAGCAATGCGCCATGGAATTTCAGGTCAGAG
TAATGGTGAAAAATACGATGCTGGTGCACAGGAAAGGGAGACAACTTTGAACCAGCTTTTAATAGAGCTTGATGGATTTGACACTGGTCAGGGAGTCATATTTTTGGGTGCGACTAATCGTATGGATCTACTAGATCCTGCATTATTGCGGCCAGGCCGTTTTGATCGCAAGATTAAAGTAAGTCCTCCTGGGGCAAAGG
GGCGACTGGAGATTCTTAAAGTCCATGCAAATAGAGTGAAGCTATCACCTTCCGTTGACCTTTCTGTTTATGCCAACAATCTACCAGGATGGTCAGGAGCAGAGCTTGCCCAGCTTCTTCAGGAGGCTGCTTTGGTGGCTGTTAGGCATGGCCATGATTCAATTCTTCAATCTGACATGAATAACGCAGTCGACAGGCTT
ACAATGGGGCCAGAGCGTAAAGGTATAGATCAGATATCACCATTTCTCTGGCGGAGGGCAACAGCTGAAGTTGGCATTGCTTTGGCATCGCATCTTTTGCGGCGTGTGGAGAATGCCCGTGTTGAATGTTGTGATCGAATATCTATAATTCCTCGTGGTGAGACATTTTCACGAACTATTTTTAACCGGCTTGATGAGGA
GGCTTATATTTTTGAGAGGCGACCCCAACTGCTCCATCGAATGCAGGTAATGCTAGGGGGCAGGGCAGCTGAAGAAGTGATGTATGGACGCAATACATCGACAGTGTCATTAACATACCTCCCAGATGCATCTTGGCTCGCGCGCAAAATCATTTCTATATGGAACATGGAGAATCCCATGGTTATACATGGAGAAGCAG
CACCCTGGAAACGTGATCCAAGCTTTACTGGTCCACCTTTGAATTTTGAAGGTTCACTGTATGACGATTATGGTCTCTATGAAAAATCTGTCAACTACAATCTGGATAATGATACCGTTCTCAGGACAGAGAAATTGCTGAATGATATGTACCAGCAGATATTTAAGTTGGTACAACACTATCATGCAGCTTTGGCCAAA
GCTGTTTATGTTATCATGGAAATGCAGGAGATTACTGGTGCTGACCTTGACATCATAATTGATCAATATCCCGCAGATACCCCTGTGCATCTTGTAGAAGAGGAGGACAATCCAGGAAGCTTGCCTCCAAGGGTGGGAGTTAAGCAAATGCTTCCTTTGGAGGCATCAGAATCGTCAACTATATCCTGGAAGAAGACCAG
TCATGAAGAAGAGAAGCTTAGCTCCAAGACCGTTACTTAGTACTTATGTATCAGAAAGCAGATGTGATTGGTTGACTGCCCTGAAAGATGATATGGAGGGTGAAATTCAGAGTGCAACAAGCGATTACGTGCAGAAAATGGAGGTGCGAGAAATTAACGAGGAATTTTTCATCTGGGACCCGAGGAATTTCTTTGCACTT
GTGCCTTGTTATAGGCAAGAGAAAATTGTGCATTCGGAAATGCCGAGGTAATTATTTTGCTCATTTTTCAAAATAATGCCTTCATTTTGAAGATGGAAGATTAGCTTTGTAAAGCACATGAAATGTGGTTTAAAGTTAACATCATTATGTGCTGAAGGCCTATGAATTATGAAACTTTTGGCTTCAGTGGCTTCTTCCAA
TGTTAGTGCTATTCTATTTTTTCTGCAAAGATGCAAGTTCAATGATATAACTCCTCCCAAGTTCCTAGGGCCTAGGGATGTCAATACCTTTAGCGTTGTTTGGACATTGATTGGGTTAATGTGTAATCTCCAATCTCTTTGTTAAATGCACGAATTTAAGAAGTATCATTTATTTCATGTGGAAAAA
Intron 2 GTGAGTTTTG ... ATTCCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.86 | 28 | 16 | 9 |
| A2 | 9.09 | 5 | 1 | 0 |
| A3 | 12.73 | 24 | 5 | 2 |
| A4 | 33.33 | 15 | 11 | 4 |
| A5 | 17.65 | 7 | 2 | 1 |
| A6 | 25 | 6 | 4 | 0 |
| A7 | 8.33 | 11 | 0 | 2 |
| A8 | 12.5 | 7 | 0 | 2 |
| A9 | 13.04 | 10 | 1 | 2 |
| A10 | 5.88 | 16 | 2 | 0 |
>TRINITY_DN100909_c2_g1_i2 from sample A4 / Example spliced isoformCAACAAATAGAGGTGGAAGTCGAAATTCTTCACAGTATAAAAAAAAAAGTCAGAAGATTATGTTAGCAGATTTTTAAGAGAAAACCCAAGTGGGATAGAACAAAAGTTTCTTATAGGAGATGAACTTTATACTTTGGAAGAAAGGGAGAAGTTGAAAACTTCAGTTCTGAAGCGAATCAAGAATGCATTAAGTGAACTTG
CTATCAAATCAGTCCCAAGTGATATCCAAGCCCAGGAGGGAATCAAGAATGCATTAAGTGAACTTAAAGGCAACTTACTCTCAAAGGATATCCAAGAGACAGAGCAAATAGAAGAGAAACATCATGAAGCACCTAGAGGGGACATTGATAAAGAGATTCCATCAAGGCCTGTTTACCTGAAAGACCTTCTAAGACAATAC
AAAGGTGAACTGTATGTTCCGGAAGAGGCATTCAAGTACCGTGCATCAGAGGTGGGTGATTTCAACAGTAGACTGAAGACATTGCCAAAAATGCACTTGAAAGACTTACTCAAGGTGATGCGGGCAAATCAGATTGAAATGCTGACATCAAGGGCTGTCCAGACTCCAGAGGGAGTTTATGTGTATCGTGACTTCATTAT
AGATTTGAAAGGATTTCCGGTAGAGAAGAACTTACAGAGAAAGAAGTGGACCATACATTTGTCAGAGAAAGAAGCACAAGCTGTTTTAGGGGAGTATTCAGGGCCACAGCGCGAAGTTGAAAGGCTATTAACGCCTTATGTAGTTCCACCATCTGTTATGCCTCATTCTGTGGCATCTTCTATCTCAAGCAGAGTGATGA
TTGAGCTTACAATGATAACAAGTGTAGTAACTGCTGCTGCATTCACAGTGGGAGGTCTTGTATCAGCAATGGTCTTTGCACTTACCGGTGTACTGTCTGTTATTGCGGTCAATTTTGTCTGGCCCGTGGCATTTTCTTTGCTTAAGGCTGTTGCTGTGCTTCTTCTAAGATGTGCAAAGACAGTGTGGAAAATGTTGGCT
ACAGTGGGTAGCATGGGAGGACTTCTCGGGCGTTACCCAAGAGTTTCTGCTTTTTTAGCATCTGGTGGTTTCTGGGCATTGCTTCAGGCATTATTTTTTATTGTAGTTATAATCATAACCATGGCCATTCTTATAAGGTTTACTCTTATAAGGAGACCAAAAGATTTCAGAAAATGGGATATATGGCAAGCTATTGAGTT
TGGGCAGTCAAAACCACATGCCCGAGTAGAGGGTTCAACTGGAGTTACATTTAAAGATGTTGCAGGTATTGATGAAGTAGTAGGGGAGTTGAAAGAGGTAGGTTTCTTTTCTTTTGTTTTGTAAGATTCCACTAAAAGTCTAGGGATTTACTTCTAACAAAGCAAATAGCTTATTCTCAGAGGGGGGTAAGTCTCTGTGG
TTAGAGAGACCACAACCATGCTGAAGGAAGAAAAG
>TRINITY_DN100909_c2_g1_i1 from sample A4 / Example unspliced isoform:CAACAAATAGAGGTGGAAGTCGAAATTCTTCACAGTATAAAAAAAAAAGTCAGAAGATTATGTTAGCAGATTTTTAAGAGAAAACCCAAGTGGGATAGAACAAAAGTTTCTTATAGGAGATGAACTTTATACTTTGGAAGAAAGGGAGAAGTTGAAAACTTCAGTTCTGAAGCGAATCAAGAATGCATTAAGTGAACTTG
CTATCAAATCAGTCCCAAGTGATATCCAAGCCCAGGAGGGAATCAAGAATGCATTAAGTGAACTTAAAGGCAACTTACTCTCAAAGGATATCCAAGAGACAGAGCAAATAGAAGAGAAACATCATGAAGCACCTAGAGGGGACATTGATAAAGAGATTCCATCAAGGCCTGTTTACCTGAAAGACCTTCTAAGACAATAC
AAAGGTGAACTGTATGTTCCGGAAGAGGCATTCAAGTACCGTGCATCAGAGGTGGGTGATTTCAACAGTAGACTGAAGACATTGCCAAAAATGCACTTGAAAGACTTACTCAAGGTGATGCGGGCAAATCAGATTGAAATGCTGACATCAAGGGCTGTCCAGACTCCAGAGGGAGTTTATGTGTATCGTGACTTCATTAT
AGATTTGAAAGGATTTCCGGTAGAGAAGAACTTACAGAGAAAGAAGTGGACCATACATTTGTCAGAGAAAGAAGCACAAGCTGTTTTAGGGGAGTATTCAGGGCCACAGCGCGAAGTTGAAAGGCTATTAACGCCTTATGTAGTTCCACCATCTGTTATGCCTCATTCTGTGGCATCTTCTATCTCAAGCAGAGTGATGA
TTGAGCTTACAATGATAACAAGTGTAGTAACTGCTGCTGCATTCACAGTGGGAGGTCTTGTATCAGCAATGGTCTTTGCACTTACCGGTGTACTGTCTGTTATTGCGGTCAATTTTGTCTGGCCCGTGGCATTTTCTTTGCTTAAGGCTGTTGCTGTGCTTCTTCTAAGATGTGCAAAGACAGTGTGGAAAATGTTGGCT
ACAGTGGGTAGCATGGGAGGACTTCTCGGGCGTTACCCAAGAGTTTCTGCTTTTTTAGCATCTGGTGGTTTCTGGGCATTGCTTCAGGCATTATTTTTTATTGTAGTTATAATCATAACCATGGCCATTCTTATAAGGTTTACTCTTATAAGGAGACCAAAAGATTTCAGAAAATGGgtgagttttgcatcttcatttct
aaattctaaatatgtttgggagttcataagcatatgttgttcattgaaattcctgctgttctgattggaaacattgaaacttttatgatacataaagaaaagaggatgaatagcatttggattcctgcagGATATATGGCAAGCTATTGAGTTTGGGCAGTCAAAACCACATGCCCGAGTAGAGGGTTCAACTGGAGTTA
CATTTAAAGATGTTGCAGGTATTGATGAAGTAGTAGGGGAGTTGAAAGAG
Intron 3 GTCAGAGTAA ... TGATCGCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 82.98 | 8 | 47 | 31 |
| A2 | 84 | 4 | 26 | 16 |
| A3 | 93.85 | 2 | 30 | 31 |
| A4 | 95.45 | 1 | 24 | 18 |
| A5 | 90.48 | 2 | 19 | 19 |
| A6 | 100 | 0 | 23 | 14 |
| A7 | 88.06 | 4 | 30 | 29 |
| A8 | 81.82 | 4 | 17 | 19 |
| A9 | 96.55 | 1 | 32 | 24 |
| A10 | 77.78 | 6 | 11 | 31 |
>TRINITY_DN42547_c0_g2_i3 from sample A9 / Example spliced isoformGAAATCGATGCTTTGGGAGCAATATTAAAGTAAGTCCTCCTGGGGCAAAGGGGCGACTGGAGATTCTTAAAGTCCATGCAAATAGAGTGAAGCTATCACCTTCCGTTGACCTTTCTGTTTATGCCAACAATCTACCAGGATGGTCAGGAGCAGAGCTTGCCCAGCTTCTTCAGGAGGCTGCTTTGGTGGCTGTTAGGCAT
GGCCATGATTCAATTCTTCAATCTGACATGAATAACGCAGTCGACAGGCTTACAATGGGGCCAGAGCGTAAAGGTATAGATCAGATATCACCATTTCTCTGGCGGAGGGCAACAGCTGAAGTTGGCATTGCTTTGGCATCGCATCTTTTGCGGCGTGTGGAGAATGCCCGTGTTGAATGTTGTGATCGAATATCTATAAT
TCCTCGTGGTGAGACATTTTCACGAACTATTTTTAACCGGCTTGATGAGGAGGCTTATATTTTTGAGAGGCGACCCCAACTGCTCCATCGAATGCAGGTAATGCTAGGGGGCAGGGCAGCTGAAGAAGTGATGTATGGACGCAATACATCGACAGTGTCATTAACATACCTCCCAGATGCATCTTGGCTCGCGCGCAAAA
TCATTTCTATATGGAACATGGAGAATCCCATGGTTATACATGGAGAAGCAGCACCCTGGAAACGTGATCCAAGCTTTACTGGTCCACCTTTGAATTTTGAAGGTTCACTGTATGACGATTATGGTCTCTATGAAAAATCTGTCAACTACAATCTGGATAATGATACCGTTCTCAGGACAGAGAAATTGCTGAATGATATG
TACCAGCAGATATTTAAGTTGGTACAACACTATCATGCAGCTTTGGCCAAAGCTGTTTATGTTATCATGGAAATGCAGGAGATTACTGGTGCTGACCTTGACATCATAATTGATCAATATCCCGCAGATACCCCTGTGCATCTTGTAGAAGAGGAGGACAATCCAGGAAGCTTGCCTCCAAGGGTGGGAGTTAAGCAAAT
GCTTCCTTTGGAGGCATCAGAATCGTCAACTATATCCTGGAAGAAGACCAGTCATGAAGAAGAGAAGCTTAGCTCCAAGACCGTTACTTAGTACTTATGTATCAGAAAGCAGATGTGATTGGTTGACTGCCCTGAAAGATGATATGGAGGGTGAAATTCAGAGTGCAACAAGCGATTACGTGCAGAAAATGGAGGTGCGA
GAAATTAACGAGGAATTTTTCATCTGGGACCCGAGGAATTTCTTTGCACTTGTGCCTTGTTATAGGCAAGAGAAAATTGTGCATTCGGAAATGCCGAGGTAATTATTTTGCTCATTTTTCAAAATAATGCCTTCATTTTGAAGATGGAAGATTAGCTTTGTAAAGCACATGAAATGTGGTTTAAAGTTAACATCATTATG
TGCTGAAGGCCTATGAATTATGAAACTTTTGGCTTCAGTGGCTTCTTCCAATGTTAGTGCTATTCTATTTTTTCTGCAAAGATGCAAGTTCAATGATATAACTCCTCCCAAGTTCCTAGGGCCTAGGGATGTGAATACCTTTAGCGTTGTTTGGACATTGATTGGGTTAATGTGTAATCTCCAATCTCTTTGTTAAATGC
ACGAATTTAAGAAGTATCATTTATTTCATGTGGAA
>TRINITY_DN42547_c0_g2_i4 from sample A9 / Example unspliced isoform:GAAAAAGCGCAGAGAGTTTTAATTCTTAGTCATCGCGCGTGTGAATACTTCGTTGGGGCGACAAGGGATCAGGCGAAGTGTTGTTTGGGAGAATCCTACAGGCAGGGAGATAATCGATTAGGAGGAACGCAAGGAGTTTGCAGAAGAATTCGACGAGCCCCCCACAAAGAAGAAGCGAAGCAACCCAGGACGAGAGAGCA
CACGTAGACGCTGTTAGAAGGACGCAGGCAGATAAACGGAAAATAAGAGCCATCCCAAGCAGAGAATAATCCTGGAAAAAGAAAGAGCAGTTAATAGTAGAAAGCCTAGCCAGCGGAGAAGATTCCAATCCTCTCCGACAGGAAAGAATCCAGTTCTAACCCGACAAGCAAAGCAAAGAAGAGACTCTGTTCTGTGCCCT
AGCAGACCTTTCAGAAGGAGAATGTTCAATGCGTGAAATGCTTTGAAGGAGGCATTTGTTTAAAAAGAGACTCTGTTCTGTGCCCTAGCAGACCTTTCAGAAGGAGAATGTTCAATGCGTGAAATGCTTTGAAGGAGGTCAAAGTACATGCAAAGCTGAAATGATGTTATCTGGGCCAGTGAAATGTTTTGATGTTCAGT
GTATTCCTTCCAAAGATGCCAGTCCACTTCCTCTCTTACCAGTGAACAGCATTAAAACGGGCTTCTATTTTCATGGACAGCAAAGCTATGGGGGCAGAGTACACTTTAGTGGTAAAACATCAATACGAATGAGCAGAACAAAGTCACACAATAGAGGCATTTTCTTTGATAGAAGAGAAATCTTTGGTCAGCTATATACT
CCTATTCTAAAGGAAAGAAGATATCTTACTAAAGTGCATGCATCTTCCTCATCAACAACAAATAGAGGTGGAAGTCGAAATTCTTCACAGTATAAAAAAAAGAAGTCAGAAGATTATGTTAGCAGATTTTTAAGAGAAAACCCAAGTGGGATAGAACAAAAGTTTCTTATAGGAGATGAACTTTATACTTTGGAAGAAAG
GGAGAAGTTGAAAACTTCAGTTCTGAAGCGAATCAAGAATGCATTAAGTGAACTTGCTATCAAATCAGTCCCAAGTGATATCCAAGCCCAGGAGGGAATCAAGAATGCATTAAGTGAACTTAAAGGCAACTTACTCTCAAAGGATATCCAAGAGACAGAGCAAATAGAAGAGAAACATCATGAAGCACCTAGAGGGGACA
TTGATAAAGAGATTCCATCAAGGCCTGTTTACCTGAAAGACCTTCTAAGACAATACAAAGGTGAACTGTATGTTCCGGAAGAGGCATTCAAGTACCGTGCATCAGAGGTGGGTGATTTCAACAGTAGACTGAAGACATTGCCAAAAATGCACTTGAAAGACTTACTCAAGGTGATGCGGGCAAATCAGATTGAAATGCTG
ACATCAAGGGCTGTCCAGACTCCAGAGGGAGTTTATGTGTATCGTGACTTCATTATAGATTTGAAAGGATTTCCGGTAGAGAAGAACTTACAGAGAAAGAAGTGGACCATACATTTGTCAGAGAAAGAAGCACAAGCTGTTTTAGGGGAGTATTCAGGGCCACAGCGCGAAGTTGAAAGGCTATTAACGCCTTATGTAGT
TCCACCATCTGTTATGCCTCATTCTGTGGCATCTTCTATCTCAAGCAGAGTGATGATTGAGCTTACAATGATAACAAGTGTAGTAACTGCTGCTGCATTCACAGTGGGAGGTCTTGTATCAGCAATGGTCTTTGCACTTACCGGTGTACTGTCTGTTATTGCGGTCAATTTTGTCTGGCCCGTGGCATTTTCTTTGCTTA
AGGCTGTTGCTGTGCTTCTTCTAAGATGTGCAAAGACAGTGTGGAAAATGTTGGCTACAGTGGGTAGCATGGGAGGACTTCTCGGGCGTTACCCAAGAGTTTCTGCTTTTTTAGCATCTGGTGGTTTCTGGGCATTGCTTCAGGCATTATTTTTTATTGTAGTTATAATCATAACCATGGCCATTCTTATAAGGTTTACT
CTTATAAGGAGACCAAAAGATTTCAGAAAATGGGATATATGGCAAGCTATTGAGTTTGGGCAGTCAAAACCACATGCCCGAGTAGAGGGTTCAACTGGAGTTACATTTAAAGATGTTGCAGGTATTGATGAAGTAGTAGGGGAGTTGAAAGAGTTGGTGAGATATTTGAAGAATCCAGAATTGTACACTAAAATGGGAAC
AAAAGCTCCTCATGGGGTACTCCTAACAGGTCCTCCTGGCTGTGGAAAGACTTTGTTGGCAAAGGCAATAGCTGGAGAAGCTGGTGTACCTTTCTACCAAATGGCTGGGTCTGAGTTTGTTGAAGTGCTTGTTGGAGTTGGTGCAGCTCGTGTCCGTGACCTCTTTAAAAGAGCAAAGGTAAACAAACCCTCAGTGGTCT
TCATTGATGAAATCGATGCTTTGGGAGCAATgtcagagtaatggtgaaaaatacgatgctggtgcacaggaaagggagacaactttgaaccagcttttaatagagcttgatggatttgacactggtcagggagtcatatttttgggtgcgactaatcgtatggatctactagatcctgcattattgcggccaggccgttt
tgatcgcaagATTAAAGTAAGTCCTCCTGGGGCAAAGGGGCGACTGGAGATTCTTAAAGTCCATGCAAATAGAGTGAAGCTATCACCTTCCGTTGACCTTTCTGTTTATGCCAACAATCTACCAGGATGGTCAGGAGCAGAGCTTGCCCAGCTTCTTCAGGAGGCTGCTTTGGTGGCTGTTAGGCATGGCCATGATTCAA
TTCTTCAATCTGACATGAATAACGCAGTCGACAGGCTTACAATGGGGCCAGAGCGTAAAGGTATAGATCAGATATCACCATTTCTCTGGCGGAGGGCAACAGCTGAAGTTGGCATTGCTTTGGCATCGCATCTTTTGCGGCGTGTGGAGAATGCCCGTGTTGAATGTTGTGATCGAATATCTATAATTCCTCGTGGTGAG
ACATTTTCACGAACTATTTTTAACCGGCTTGATGAGGAGGCTTATATTTTTGAGAGGCGACCCCAACTGCTCCATCGAATGCAGGTAATGCTAGGGGGCAGGGCAGCTGAAGAAGTGATGTATGGACGCAATACATCGACAGTGTCATTAACATACCTCCCAGATGCATCTTGGCTCGCGCGCAAAATCATTTCTATATG
GAACATGGAGAATCCCATGGTTATACATGGAGAAGCAGCACCCTGGAAACGTGATCCAAGCTTTACTGGTCCACCTTTGAATTTTGAAGGTTCACTGTATGACGATTATGGTCTCTATGAAAAATCTGTCAACTACAATCTGGATAATGATACCGTTCTCAGGACAGAGAAATTGCTGAATGATATGTACCAGCAGATAT
TTAAGTTGGTACAACACTATCATGCAGCTTTGGCCAAAGCTGTTTATGTTATCATGGAAATGCAGGAGATTACTGGTGCTGACCTTGACATCATAATTGATCAATATCCCGCAGATACCCCTGTGCATCTTGTAGAAGAGGAGGACAATCCAGGAAGCTTGCCTCCAAGGGTGGGAGTTAAGCAAATGCTTCCTTTGGAG
GCATCAGAATCGTCAACTATATCCTGGAAGAAGACCAGTCATGAAGAAGAGAAGCTTAGCTCCAAGACCGTTACTTAGTACTTATGTATCAGAAAGCAGATGTGATTGGTTGACTGCCCTGAAAGATGATATGGAGGGTGAAATTCAGAGTGCAACAAGCGATTACGTGCAGAAAATGGAGGTGCGAGAAATTAACGAGG
AATTTTTCATCTGGGACCCGAGGAATTTCTTTGCACTTGTGCCTTGTTATAGGCAAGAGAAAATTGTGCATTCGGAAATGCCGAGGTAATTATTTTGCTCATTTTTCAAAATAATGCCTTCATTTTGAAGATGGAAGATTAGCTTTGTAAAGCACATGAAATGTGGTTTAAAGTTAACATCATTATGTGCTGAAGGCCTA
TGAATTATGAAACTTTTGGCTTCAGTGGCTTCTTCCAATGTTAGTGCTATTCTATTTTTTCTGCAAAGATGCAAGTTCAATGATATAACTCCTCCCAAGTTCCTAGGGCCTAGGGATGTGAATACCTTTAGCGTTGTTTGGACATTGATTGGGTTAATGTGTAATCTCCAATCTCTTTGTTAAATGCACGAATTTAAGAA
GTATCATTTATTTCATGTGGAA
Intron 4 GCGCCATGGA ... AATCTACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75.76 | 12 | 41 | 34 |
| A2 | 40.17 | 35 | 22 | 25 |
| A3 | 72.55 | 7 | 30 | 7 |
| A4 | 63.27 | 9 | 22 | 9 |
| A5 | 78.57 | 3 | 19 | 3 |
| A6 | 53.57 | 13 | 15 | 15 |
| A7 | 61.64 | 14 | 22 | 23 |
| A8 | 89.19 | 2 | 15 | 18 |
| A9 | 61.54 | 15 | 31 | 17 |
| A10 | 81.25 | 3 | 9 | 17 |
>TRINITY_DN119264_c1_g1_i3 from sample A2 / Example spliced isoformGAAAAAGCGCAGAGAGTTTTAATTCTTAGTCATCGCGCGTGTGAATACTTCGTTGGGGCGACAAGGGATCAGGCGAAGTGTTGTTTGGGAGAATCCCACAGGCAGGGAGATAATCGATTGGGAGGAACGCAAGGAGTTTGCAGAAGAATTCGACGAGCCCCCCACAAGAAGAAGGGAAGCAACCCGGGACGAGAGAGCAC
ACGTAGACGCTGTAGGAAGGACGCAGGCAGATAAACGGAAAATAAGAGCCATCCCAAGCAGAGAATAATCCTGGAAAAAGAAAGAGCAGTTAATAGTAGAAAGCCTAGCCAGCGGAGAAGATTCCAATCCTCTCCGACAGGAAAGAATCCAGTTCTAACCCGACAAGCAAAGCAAAGAAGAGACTCTGTTCTGTGCCCTA
GCAGACCTTTCAGAAGGAGAATGTCCAATGCGTGAAATGCTTTGAAGGAGGTCAAAGTACATGCAAAGCTGAAATGATGTTATCTGGGCCAGTGAAATGTTTTGATGTTCAGTGTATTCCTTCCAAAGATGCCAGTCCACTTCCTCTCTTACCAGTGAACAGCATTAAAACGGGCTTCTATTTTCATGGACAGCAAAGCT
ATGGGGGCAGAGTACACTTTAGTGGTAAAACATCGATACGAATGAGCAGAACAAAGTCACACAATAGAGGCATTTTCTTTGATAAAAGAGAAATCTTTGGTCAGCTATATACTCCTATTCTAAAGGAAAGAAGATATCTTACTAAAGTGCATGCATCTTCCTCATCAACAACAAATAGAGGTGGAAGTCGAAATTCTTCA
CAGTATAAAAAAAAGAAGTCAGAAGATTATGTTAGCAGATTTTTAAGAGAAAACCCAAGTGGGATAGAACAAAAGTTTCTTATAGGAGATGAACTTTATACTTTGGAAGAAAGGGAGAAGTTGAAAACTTCAGTTCTGAAGCGAATCAAGAATGCATTAAGTGAACTTGCTATCAAATCAGTCCCAAGTGATATCCAAGC
CCAGGAGGGAATCAAGAATGCATTAAGTGAACTTAAAGGCAACTTACTCTCAAAGGATATCCAAGAGACAGAGCAAATAGAAGAGAAACATCATGAAGCACCTAGAGGGGACATTGATAAAGAGATTCCATCAAGGCCTGTTTACCTGAAAGACCTTCTAAGACAATACAAAGGTGAACTGTATGTTCCGGAAGAGGCAT
TCAAGTACCGTGCATCAGAGGTGGGTGATTTCAACAGTAGACTGAAGACATTGCCAAAAATGCACTTGAAAGACTTACTCAAGGTGATGCGGGCAAATCAGATTGAAATGCTGACATCAAGGGCTGTCCAGACTCCAGAGGGAGTTTATGTGTATCGTGACTTCATTATAGATTTGAAAGGATTTCCGGTAGAGAAGAAC
TTACAGAGAAAGAAGTGGACCATACATTTGTCAGAGAAAGAAGCACAAGCTGTTTTAGGGGAGTATTCAGGGCCACAGCGCGAAGTTGAAAGGCTATTAACGCCTTATGTAGTTCCACCATCTGTTATGCCTCATTCTGTGGCATCTTCTATCTCAAGCAGAGTGATGATTGAGCTTACAATGATAACAAGTGTAGTAAC
TGCTGCTGCATTCACAGTGGGAGGTCTTGTATCAGCAATGGTCTTTGCACTTACCGGTGTACTGTCTGTTATTGCGGTCAATTTTGTCTGGCCCGTGGCATTTTCTTTGCTTAAGGCTGTTGCTGTGCTTCTTCTAAGATGTGCAAAGACAGTGTGGAAAATGTTGGCTACAGTGGGTAGCATGGGAGGACTTCTCGGGC
GTTACCCAAGAGTTTCTGCTTTTTTAGCATCTGGTGGTTTCTGGGCATTGCTTCAGGCATTATTTTTTATTGTAGTTATAATCATAACCATGGCCATTCTTATAAGGTTTACTCTTATAAGGAGACCAAAAGATTTCAGAAAATGGGATATATGGCAAGCTATTGAGTTTGGGCAGTCAAAACCACATGCCCGAGTAGAG
GGTTCAACTGGAGTTACATTTAAAGATGTTGCAGGTATTGATGAAGTAGTAGGGGAGTTGAAAGAGTTGGTGAGATATTTGAAGAATCCAGAATTGTACACTAAAATGGGAACAAAAGCTCCTCATGGGGTACTCCTAACAGGTCCTCCTGGCTGTGGAAAGACTTTGTTGGCAAAGGCAATAGCTGGAGAAGCTGGTGT
ACCTTTCTACCAAATGGCTGGTTCTGAGTTTGTTGAAGTGCTTGTTGGAGTTGGTGCAGCTCGTGTCCGTGACCTCTTTAAAAGAGCAAAGGTAAACAAACCCTCAGTGGTCTTCATTGATGAAATCGATGCTTTGGGAGCAATGATGGTCAGGAGCAGAGCTTGCCCAGCTTCTTCAGGAGGCTGCTTTGGTGGCTGTT
AGGCATGGCCATGATTCAATTCTTCAATCTGACATGAATAACGCAGTCGACAGGCTTACAATGGGGCCAGAGCGTAAAGGTATAGATCAGATATCACCATTTCTCTGGCGGAGGGCAACAGCTGAAGTTGGCATTGCTTTGGCATCGCATCTTTTGCGGCGTGTGGAGAATGCCCGTGTTGAATGTTGTGATCGAATATC
TATAATTCCTCGTGGTGAGACATTTTCACGAACTATTTTTAACCGGCTTGATGAGGAGGCTTATATTTTTGAGAGGCGACCCCAACTGCTCCATCGAATGCAGGTAATGCTAGGGGGCAGGGCAGCTGAAGAAGTGATGTATGGACGCAATACATCGACAGTGTCATTAACATACCTCCCAGATGCATCTTGGCTCGCGC
GCAAAATCATTTCTATATGGAACATGGAGAATCCCATGGTTATACATGGAGAAGCAGCACCCTGGAAACGTGATCCAAGCTTTACTGGTCCACCTTTGAATTTTGAAGGTTCACTGTATGACGATTATGGTCTCTATGAAAAATCTGTCAACTACAATCTGGATAATGATACCGTTCTCAGGACAGAGAAATTGCTGAAT
GATATGTACCAGCAGATATTTAAGTTGGTACAACACTATCATGCAGCTTTGGCCAAAGCTGTTTATGTTATCATGGAAATGCAGGAGATTACTGGTGCTGACCTTGACATCATAATTGATCAATATCCCGCAGATACCCCTGTGCATCTTGTAGAAGAGGAGGACAATCCAGGAAGCTTGCCTCCAAGGGTGGGAGTTAA
GCAAATGCTTCCTTTGGAGGCATCAGAATCGTCAACTATATCCTGGAAGAAGACCAGTCATGAAGAAGAGAAGCTTAGCTCCAAGACCGTTACTTAGTACTTATGTATCAGAAAGCAGATGTGATTGGTTGACTGCCCTGAAAGATGATATGGAGGGTGAAATTCAGAGTGCAACAAGCGATTACGTGCAGAAAATGGAG
GTGCGAGAAATTAACGAGGAATTTTTCATCTGGGACCCGAGGAATTTCTTTGCACTTGTGCCTTGTTATAGGCAAGAGAAAATTGTGCATTCGGAAATGCCGAGGTAATTATTTTGCTCATTTTTCAAAATAATGCCTTCATTTTGAAGATGGAAGATTAGCTTTGTAAAGCACATGAAATGTGGTTTAAAGTTAACATC
ATTATGTGCTGAAGGCCTATGAATTATGAAACTTTTGGCTTCAGTGGCTTCTTCCAATGTTAGTGCTATTCTATTTTTTCTGCAAAGATGCAAGTTCAATGATATAACTCCTCCCAAGTTCCTAGGGCCTAGGGATGTCAATACCTTTAGCGTTGTTTGGACATTGATTGGGTTAATGTGTAATCTCCAATCTCTTTGTT
AAATGCACGAATTTAAGAAGTATCATTTATTTCATGTGGAAAAA
>TRINITY_DN119264_c1_g1_i2 from sample A2 / Example unspliced isoform:GAAAAAGCGCAGAGAGTTTTAATTCTTAGTCATCGCGCGTGTGAATACTTCGTTGGGGCGACAAGGGATCAGGCGAAGTGTTGTTTGGGAGAATCCCACAGGCAGGGAGATAATCGATTGGGAGGAACGCAAGGAGTTTGCAGAAGAATTCGACGAGCCCCCCACAAGAAGAAGGGAAGCAACCCGGGACGAGAGAGCAC
ACGTAGACGCTGTAGGAAGGACGCAGGCAGATAAACGGAAAATAAGAGCCATCCCAAGCAGAGAATAATCCTGGAAAAAGAAAGAGCAGTTAATAGTAGAAAGCCTAGCCAGCGGAGAAGATTCCAATCCTCTCCGACAGGAAAGAATCCAGTTCTAACCCGACAAGCAAAGCAAAGAAGAGACTCTGTTCTGTGCCCTA
GCAGACCTTTCAGAAGGAGAATGTCCAATGCGTGAAATGCTTTGAAGGAGGTCAAAGTACATGCAAAGCTGAAATGATGTTATCTGGGCCAGTGAAATGTTTTGATGTTCAGTGTATTCCTTCCAAAGATGCCAGTCCACTTCCTCTCTTACCAGTGAACAGCATTAAAACGGGCTTCTATTTTCATGGACAGCAAAGCT
ATGGGGGCAGAGTACACTTTAGTGGTAAAACATCGATACGAATGAGCAGAACAAAGTCACACAATAGAGGCATTTTCTTTGATAAAAGAGAAATCTTTGGTCAGCTATATACTCCTATTCTAAAGGAAAGAAGATATCTTACTAAAGTGCATGCATCTTCCTCATCAACAACAAATAGAGGTGGAAGTCGAAATTCTTCA
CAGTATAAAAAAAAGAAGTCAGAAGATTATGTTAGCAGATTTTTAAGAGAAAACCCAAGTGGGATAGAACAAAAGTTTCTTATAGGAGATGAACTTTATACTTTGGAAGAAAGGGAGAAGTTGAAAACTTCAGTTCTGAAGCGAATCAAGAATGCATTAAGTGAACTTGCTATCAAATCAGTCCCAAGTGATATCCAAGC
CCAGGAGGGAATCAAGAATGCATTAAGTGAACTTAAAGGCAACTTACTCTCAAAGGATATCCAAGAGACAGAGCAAATAGAAGAGAAACATCATGAAGCACCTAGAGGGGACATTGATAAAGAGATTCCATCAAGGCCTGTTTACCTGAAAGACCTTCTAAGACAATACAAAGGTGAACTGTATGTTCCGGAAGAGGCAT
TCAAGTACCGTGCATCAGAGGTGGGTGATTTCAACAGTAGACTGAAGACATTGCCAAAAATGCACTTGAAAGACTTACTCAAGGTGATGCGGGCAAATCAGATTGAAATGCTGACATCAAGGGCTGTCCAGACTCCAGAGGGAGTTTATGTGTATCGTGACTTCATTATAGATTTGAAAGGATTTCCGGTAGAGAAGAAC
TTACAGAGAAAGAAGTGGACCATACATTTGTCAGAGAAAGAAGCACAAGCTGTTTTAGGGGAGTATTCAGGGCCACAGCGCGAAGTTGAAAGGCTATTAACGCCTTATGTAGTTCCACCATCTGTTATGCCTCATTCTGTGGCATCTTCTATCTCAAGCAGAGTGATGATTGAGCTTACAATGATAACAAGTGTAGTAAC
TGCTGCTGCATTCACAGTGGGAGGTCTTGTATCAGCAATGGTCTTTGCACTTACCGGTGTACTGTCTGTTATTGCGGTCAATTTTGTCTGGCCCGTGGCATTTTCTTTGCTTAAGGCTGTTGCTGTGCTTCTTCTAAGATGTGCAAAGACAGTGTGGAAAATGTTGGCTACAGTGGGTAGCATGGGAGGACTTCTCGGGC
GTTACCCAAGAGTTTCTGCTTTTTTAGCATCTGGTGGTTTCTGGGCATTGCTTCAGGCATTATTTTTTATTGTAGTTATAATCATAACCATGGCCATTCTTATAAGGTTTACTCTTATAAGGAGACCAAAAGATTTCAGAAAATGGGATATATGGCAAGCTATTGAGTTTGGGCAGTCAAAACCACATGCCCGAGTAGAG
GGTTCAACTGGAGTTACATTTAAAGATGTTGCAGGTATTGATGAAGTAGTAGGGGAGTTGAAAGAGTTGGTGAGATATTTGAAGAATCCAGAATTGTACACTAAAATGGGAACAAAAGCTCCTCATGGGGTACTCCTAACAGGTCCTCCTGGCTGTGGAAAGACTTTGTTGGCAAAGGCAATAGCTGGAGAAGCTGGTGT
ACCTTTCTACCAAATGGCTGGTTCTGAGTTTGTTGAAGTGCTTGTTGGAGTTGGTGCAGCTCGTGTCCGTGACCTCTTTAAAAGAGCAAAGGTAAACAAACCCTCAGTGGTCTTCATTGATGAAATCGATGCTTTGGGAGCAATgcgccatggaatttcaggtcagagtaatggtgaaaaatacgatgctggtgcacagg
aaagggagacaactttgaaccagcttttaatagagcttgatggatttgacactggtcagggagtcatatttttgggtgcgactaatcgtatggatctactagatcctgcattattgcggccaggccgttttgatcgcaagattaaagtaagtcctcctggggcaaaggggcgactggagattcttaaagtccatgcaaat
agagtgaagctatcaccttccgttgacctttctgtttatgccaacaatctaccagGATGGTCAGGAGCAGAGCTTGCCCAGCTTCTTCAGGAGGCTGCTTTGGTGGCTGTTAGGCATGGCCATGATTCAATTCTTCAATCTGACATGAATAACGCAGTCGACAGGCTTACAATGGGGCCAGAGCGTAAAGGTATAGATCA
GATATCACCATTTCTCTGGCGGAGGGCAACAGCTGAAGTTGGCATTGCTTTGGCATCGCATCTTTTGCGGCGTGTGGAGAATGCCCGTGTTGAATGTTGTGATCGAATATCTATAATTCCTCGTGGTGAGACATTTTCACGAACTATTTTTAACCGGCTTGATGAGGAGGCTTATATTTTTGAGAGGCGACCCCAACTGC
TCCATCGAATGCAGGTAATGCTAGGGGGCAGGGCAGCTGAAGAAGTGATGTATGGACGCAATACATCGACAGTGTCATTAACATACCTCCCAGATGCATCTTGGCTCGCGCGCAAAATCATTTCTATATGGAACATGGAGAATCCCATGGTTATACATGGAGAAGCAGCACCCTGGAAACGTGATCCAAGCTTTACTGGT
CCACCTTTGAATTTTGAAGGTTCACTGTATGACGATTATGGTCTCTATGAAAAATCTGTCAACTACAATCTGGATAATGATACCGTTCTCAGGACAGAGAAATTGCTGAATGATATGTACCAGCAGATATTTAAGTTGGTACAACACTATCATGCAGCTTTGGCCAAAGCTGTTTATGTTATCATGGAAATGCAGGAGAT
TACTGGTGCTGACCTTGACATCATAATTGATCAATATCCCGCAGATACCCCTGTGCATCTTGTAGAAGAGGAGGACAATCCAGGAAGCTTGCCTCCAAGGGTGGGAGTTAAGCAAATGCTTCCTTTGGAGGCATCAGAATCGTCAACTATATCCTGGAAGAAGACCAGTCATGAAGAAGAGAAGCTTAGCTCCAAGACCG
TTACTTAGTACTTATGTATCAGAAAGCAGATGTGATTGGTTGACTGCCCTGAAAGATGATATGGAGGGTGAAATTCAGAGTGCAACAAGCGATTACGTGCAGAAAATGGAGGTGCGAGAAATTAACGAGGAATTTTTCATCTGGGACCCGAGGAATTTCTTTGCACTTGTGCCTTGTTATAGGCAAGAGAAAATTGTGCA
TTCGGAAATGCCGAGGTAATTATTTTGCTCATTTTTCAAAATAATGCCTTCATTTTGAAGATGGAAGATTAGCTTTGTAAAGCACATGAAATGTGGTTTAAAGTTAACATCATTATGTGCTGAAGGCCTATGAATTATGAAACTTTTGGCTTCAGTGGCTTCTTCCAATGTTAGTGCTATTCTATTTTTTCTGCAAAGAT
GCAAGTTCAATGATATAACTCCTCCCAAGTTCCTAGGGCCTAGGGATGTCAATACCTTTAGCGTTGTTTGGACATTGATTGGGTTAATGTGTAATCTCCAATCTCTTTGTTAAATGCACGAATTTAAGAAGTATCATTTATTTCATGTGGAAAAA
Intron 5 GCGCCATGGA ... TGATCGCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 81.82 | 8 | 41 | 31 |
| A2 | 82.61 | 4 | 22 | 16 |
| A3 | 93.85 | 2 | 30 | 31 |
| A4 | 95.24 | 1 | 22 | 18 |
| A5 | 90.48 | 2 | 19 | 19 |
| A6 | 100 | 0 | 15 | 14 |
| A7 | 86.44 | 4 | 22 | 29 |
| A8 | 80.95 | 4 | 15 | 19 |
| A9 | 96.49 | 1 | 31 | 24 |
| A10 | 76.92 | 6 | 9 | 31 |
>TRINITY_DN42547_c0_g2_i3 from sample A9 / Example spliced isoformGAAATCGATGCTTTGGGAGCAATATTAAAGTAAGTCCTCCTGGGGCAAAGGGGCGACTGGAGATTCTTAAAGTCCATGCAAATAGAGTGAAGCTATCACCTTCCGTTGACCTTTCTGTTTATGCCAACAATCTACCAGGATGGTCAGGAGCAGAGCTTGCCCAGCTTCTTCAGGAGGCTGCTTTGGTGGCTGTTAGGCAT
GGCCATGATTCAATTCTTCAATCTGACATGAATAACGCAGTCGACAGGCTTACAATGGGGCCAGAGCGTAAAGGTATAGATCAGATATCACCATTTCTCTGGCGGAGGGCAACAGCTGAAGTTGGCATTGCTTTGGCATCGCATCTTTTGCGGCGTGTGGAGAATGCCCGTGTTGAATGTTGTGATCGAATATCTATAAT
TCCTCGTGGTGAGACATTTTCACGAACTATTTTTAACCGGCTTGATGAGGAGGCTTATATTTTTGAGAGGCGACCCCAACTGCTCCATCGAATGCAGGTAATGCTAGGGGGCAGGGCAGCTGAAGAAGTGATGTATGGACGCAATACATCGACAGTGTCATTAACATACCTCCCAGATGCATCTTGGCTCGCGCGCAAAA
TCATTTCTATATGGAACATGGAGAATCCCATGGTTATACATGGAGAAGCAGCACCCTGGAAACGTGATCCAAGCTTTACTGGTCCACCTTTGAATTTTGAAGGTTCACTGTATGACGATTATGGTCTCTATGAAAAATCTGTCAACTACAATCTGGATAATGATACCGTTCTCAGGACAGAGAAATTGCTGAATGATATG
TACCAGCAGATATTTAAGTTGGTACAACACTATCATGCAGCTTTGGCCAAAGCTGTTTATGTTATCATGGAAATGCAGGAGATTACTGGTGCTGACCTTGACATCATAATTGATCAATATCCCGCAGATACCCCTGTGCATCTTGTAGAAGAGGAGGACAATCCAGGAAGCTTGCCTCCAAGGGTGGGAGTTAAGCAAAT
GCTTCCTTTGGAGGCATCAGAATCGTCAACTATATCCTGGAAGAAGACCAGTCATGAAGAAGAGAAGCTTAGCTCCAAGACCGTTACTTAGTACTTATGTATCAGAAAGCAGATGTGATTGGTTGACTGCCCTGAAAGATGATATGGAGGGTGAAATTCAGAGTGCAACAAGCGATTACGTGCAGAAAATGGAGGTGCGA
GAAATTAACGAGGAATTTTTCATCTGGGACCCGAGGAATTTCTTTGCACTTGTGCCTTGTTATAGGCAAGAGAAAATTGTGCATTCGGAAATGCCGAGGTAATTATTTTGCTCATTTTTCAAAATAATGCCTTCATTTTGAAGATGGAAGATTAGCTTTGTAAAGCACATGAAATGTGGTTTAAAGTTAACATCATTATG
TGCTGAAGGCCTATGAATTATGAAACTTTTGGCTTCAGTGGCTTCTTCCAATGTTAGTGCTATTCTATTTTTTCTGCAAAGATGCAAGTTCAATGATATAACTCCTCCCAAGTTCCTAGGGCCTAGGGATGTGAATACCTTTAGCGTTGTTTGGACATTGATTGGGTTAATGTGTAATCTCCAATCTCTTTGTTAAATGC
ACGAATTTAAGAAGTATCATTTATTTCATGTGGAA
>TRINITY_DN42547_c0_g2_i2 from sample A9 / Example unspliced isoform:GAAAAAGCGCAGAGAGTTTTAATTCTTAGTCATCGCGCGTGTGAATACTTCGTTGGGGCGACAAGGGATCAGGCGAAGTGTTGTTTGGGAGAATCCTACAGGCAGGGAGATAATCGATTAGGAGGAACGCAAGGAGTTTGCAGAAGAATTCGACGAGCCCCCCACAAAGAAGAAGCGAAGCAACCCAGGACGAGAGAGCA
CACGTAGACGCTGTTAGAAGGACGCAGGCAGATAAACGGAAAATAAGAGCCATCCCAAGCAGAGAATAATCCTGGAAAAAGAAAGAGCAGTTAATAGTAGAAAGCCTAGCCAGCGGAGAAGATTCCAATCCTCTCCGACAGGAAAGAATCCAGTTCTAACCCGACAAGCAAAGCAAAGAAGAGACTCTGTTCTGTGCCCT
AGCAGACCTTTCAGAAGGAGAATGTTCAATGCGTGAAATGCTTTGAAGGAGGCATTTGTTTAAAAAGAGACTCTGTTCTGTGCCCTAGCAGACCTTTCAGAAGGAGAATGTTCAATGCGTGAAATGCTTTGAAGGAGGTCAAAGTACATGCAAAGCTGAAATGATGTTATCTGGGCCAGTGAAATGTTTTGATGTTCAGT
GTATTCCTTCCAAAGATGCCAGTCCACTTCCTCTCTTACCAGTGAACAGCATTAAAACGGGCTTCTATTTTCATGGACAGCAAAGCTATGGGGGCAGAGTACACTTTAGTGGTAAAACATCAATACGAATGAGCAGAACAAAGTCACACAATAGAGGCATTTTCTTTGATAGAAGAGAAATCTTTGGTCAGCTATATACT
CCTATTCTAAAGGAAAGAAGATATCTTACTAAAGTGCATGCATCTTCCTCATCAACAACAAATAGAGGTGGAAGTCGAAATTCTTCACAGTATAAAAAAAAGAAGTCAGAAGATTATGTTAGCAGATTTTTAAGAGAAAACCCAAGTGGGATAGAACAAAAGTTTCTTATAGGAGATGAACTTTATACTTTGGAAGAAAG
GGAGAAGTTGAAAACTTCAGTTCTGAAGCGAATCAAGAATGCATTAAGTGAACTTGCTATCAAATCAGTCCCAAGTGATATCCAAGCCCAGGAGGGAATCAAGAATGCATTAAGTGAACTTAAAGGCAACTTACTCTCAAAGGATATCCAAGAGACAGAGCAAATAGAAGAGAAACATCATGAAGCACCTAGAGGGGACA
TTGATAAAGAGATTCCATCAAGGCCTGTTTACCTGAAAGACCTTCTAAGACAATACAAAGGTGAACTGTATGTTCCGGAAGAGGCATTCAAGTACCGTGCATCAGAGGTGGGTGATTTCAACAGTAGACTGAAGACATTGCCAAAAATGCACTTGAAAGACTTACTCAAGGTGATGCGGGCAAATCAGATTGAAATGCTG
ACATCAAGGGCTGTCCAGACTCCAGAGGGAGTTTATGTGTATCGTGACTTCATTATAGATTTGAAAGGATTTCCGGTAGAGAAGAACTTACAGAGAAAGAAGTGGACCATACATTTGTCAGAGAAAGAAGCACAAGCTGTTTTAGGGGAGTATTCAGGGCCACAGCGCGAAGTTGAAAGGCTATTAACGCCTTATGTAGT
TCCACCATCTGTTATGCCTCATTCTGTGGCATCTTCTATCTCAAGCAGAGTGATGATTGAGCTTACAATGATAACAAGTGTAGTAACTGCTGCTGCATTCACAGTGGGAGGTCTTGTATCAGCAATGGTCTTTGCACTTACCGGTGTACTGTCTGTTATTGCGGTCAATTTTGTCTGGCCCGTGGCATTTTCTTTGCTTA
AGGCTGTTGCTGTGCTTCTTCTAAGATGTGCAAAGACAGTGTGGAAAATGTTGGCTACAGTGGGTAGCATGGGAGGACTTCTCGGGCGTTACCCAAGAGTTTCTGCTTTTTTAGCATCTGGTGGTTTCTGGGCATTGCTTCAGGCATTATTTTTTATTGTAGTTATAATCATAACCATGGCCATTCTTATAAGGTTTACT
CTTATAAGGAGACCAAAAGATTTCAGAAAATGGGATATATGGCAAGCTATTGAGTTTGGGCAGTCAAAACCACATGCCCGAGTAGAGGGTTCAACTGGAGTTACATTTAAAGATGTTGCAGGTATTGATGAAGTAGTAGGGGAGTTGAAAGAGTTGGTGAGATATTTGAAGAATCCAGAATTGTACACTAAAATGGGAAC
AAAAGCTCCTCATGGGGTACTCCTAACAGGTCCTCCTGGCTGTGGAAAGACTTTGTTGGCAAAGGCAATAGCTGGAGAAGCTGGTGTACCTTTCTACCAAATGGCTGGGTCTGAGTTTGTTGAAGTGCTTGTTGGAGTTGGTGCAGCTCGTGTCCGTGACCTCTTTAAAAGAGCAAAGGTAAACAAACCCTCAGTGGTCT
TCATTGATGAAATCGATGCTTTGGGAGCAATgcgccatggaatttcaggtcagagtaatggtgaaaaatacgatgctggtgcacaggaaagggagacaactttgaaccagcttttaatagagcttgatggatttgacactggtcagggagtcatatttttgggtgcgactaatcgtatggatctactagatcctgcatta
ttgcggccaggccgttttgatcgcaagATTAAAGTAAGTCCTCCTGGGGCAAAGGGGCGACTGGAGATTCTTAAAGTCCATGCAAATAGAGTGAAGCTATCACCTTCCGTTGACCTTTCTGTTTATGCCAACAATCTACCAGGATGGTCAGGAGCAGAGCTTGCCCAGCTTCTTCAGGAGGCTGCTTTGGTGGCTGTTAG
GCATGGCCATGATTCAATTCTTCAATCTGACATGAATAACGCAGTCGACAGGCTTACAATGGGGCCAGAGCGTAAAGGTATAGATCAGATATCACCATTTCTCTGGCGGAGGGCAACAGCTGAAGTTGGCATTGCTTTGGCATCGCATCTTTTGCGGCGTGTGGAGAATGCCCGTGTTGAATGTTGTGATCGAATATCTA
TAATTCCTCGTGGTGAGACATTTTCACGAACTATTTTTAACCGGCTTGATGAGGAGGCTTATATTTTTGAGAGGCGACCCCAACTGCTCCATCGAATGCAGGTAATGCTAGGGGGCAGGGCAGCTGAAGAAGTGATGTATGGACGCAATACATCGACAGTGTCATTAACATACCTCCCAGATGCATCTTGGCTCGCGCGC
AAAATCATTTCTATATGGAACATGGAGAATCCCATGGTTATACATGGAGAAGCAGCACCCTGGAAACGTGATCCAAGCTTTACTGGTCCACCTTTGAATTTTGAAGGTTCACTGTATGACGATTATGGTCTCTATGAAAAATCTGTCAACTACAATCTGGATAATGATACCGTTCTCAGGACAGAGAAATTGCTGAATGA
TATGTACCAGCAGATATTTAAGTTGGTACAACACTATCATGCAGCTTTGGCCAAAGCTGTTTATGTTATCATGGAAATGCAGGAGATTACTGGTGCTGACCTTGACATCATAATTGATCAATATCCCGCAGATACCCCTGTGCATCTTGTAGAAGAGGAGGACAATCCAGGAAGCTTGCCTCCAAGGGTGGGAGTTAAGC
AAATGCTTCCTTTGGAGGCATCAGAATCGTCAACTATATCCTGGAAGAAGACCAGTCATGAAGAAGAGAAGCTTAGCTCCAAGACCGTTACTTAGTACTTATGTATCAGAAAGCAGATGTGATTGGTTGACTGCCCTGAAAGATGATATGGAGGGTGAAATTCAGAGTGCAACAAGCGATTACGTGCAGAAAATGGAGGT
GCGAGAAATTAACGAGGAATTTTTCATCTGGGACCCGAGGAATTTCTTTGCACTTGTGCCTTGTTATAGGCAAGAGAAAATTGTGCATTCGGAAATGCCGAGGTAATTATTTTGCTCATTTTTCAAAATAATGCCTTCATTTTGAAGATGGAAGATTAGCTTTGTAAAGCACATGAAATGTGGTTTAAAGTTAACATCAT
TATGTGCTGAAGGCCTATGAATTATGAAACTTTTGGCTTCAGTGGCTTCTTCCAATGTTAGTGCTATTCTATTTTTTCTGCAAAGATGCAAGTTCAATGATATAACTCCTCCCAAGTTCCTAGGGCCTAGGGATGTGAATACCTTTAGCGTTGTTTGGACATTGATTGGGTTAATGTGTAATCTCCAATCTCTTTGTTAA
ATGCACGAATTTAAGAAGTATCATTTATTTCATGTGGAA
Intron 6 GTCAGAGTAA ... AATCTACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 77.14 | 12 | 47 | 34 |
| A2 | 42.15 | 35 | 26 | 25 |
| A3 | 72.55 | 7 | 30 | 7 |
| A4 | 64.71 | 9 | 24 | 9 |
| A5 | 78.57 | 3 | 19 | 3 |
| A6 | 59.38 | 13 | 23 | 15 |
| A7 | 65.43 | 14 | 30 | 23 |
| A8 | 89.74 | 2 | 17 | 18 |
| A9 | 62.03 | 15 | 32 | 17 |
| A10 | 82.35 | 3 | 11 | 17 |
>TRINITY_DN42547_c0_g2_i1 from sample A9 / Example spliced isoformGAAAAAGCGCAGAGAGTTTTAATTCTTAGTCATCGCGCGTGTGAATACTTCGTTGGGGCGACAAGGGATCAGGCGAAGTGTTGTTTGGGAGAATCCTACAGGCAGGGAGATAATCGATTAGGAGGAACGCAAGGAGTTTGCAGAAGAATTCGACGAGCCCCCCACAAAGAAGAAGCGAAGCAACCCAGGACGAGAGAGCA
CACGTAGACGCTGTTAGAAGGACGCAGGCAGATAAACGGAAAATAAGAGCCATCCCAAGCAGAGAATAATCCTGGAAAAAGAAAGAGCAGTTAATAGTAGAAAGCCTAGCCAGCGGAGAAGATTCCAATCCTCTCCGACAGGAAAGAATCCAGTTCTAACCCGACAAGCAAAGCAAAGAAGAGACTCTGTTCTGTGCCCT
AGCAGACCTTTCAGAAGGAGAATGTTCAATGCGTGAAATGCTTTGAAGGAGGCATTTGTTTAAAAAGAGACTCTGTTCTGTGCCCTAGCAGACCTTTCAGAAGGAGAATGTTCAATGCGTGAAATGCTTTGAAGGAGGTCAAAGTACATGCAAAGCTGAAATGATGTTATCTGGGCCAGTGAAATGTTTTGATGTTCAGT
GTATTCCTTCCAAAGATGCCAGTCCACTTCCTCTCTTACCAGTGAACAGCATTAAAACGGGCTTCTATTTTCATGGACAGCAAAGCTATGGGGGCAGAGTACACTTTAGTGGTAAAACATCAATACGAATGAGCAGAACAAAGTCACACAATAGAGGCATTTTCTTTGATAGAAGAGAAATCTTTGGTCAGCTATATACT
CCTATTCTAAAGGAAAGAAGATATCTTACTAAAGTGCATGCATCTTCCTCATCAACAACAAATAGAGGTGGAAGTCGAAATTCTTCACAGTATAAAAAAAAGAAGTCAGAAGATTATGTTAGCAGATTTTTAAGAGAAAACCCAAGTGGGATAGAACAAAAGTTTCTTATAGGAGATGAACTTTATACTTTGGAAGAAAG
GGAGAAGTTGAAAACTTCAGTTCTGAAGCGAATCAAGAATGCATTAAGTGAACTTGCTATCAAATCAGTCCCAAGTGATATCCAAGCCCAGGAGGGAATCAAGAATGCATTAAGTGAACTTAAAGGCAACTTACTCTCAAAGGATATCCAAGAGACAGAGCAAATAGAAGAGAAACATCATGAAGCACCTAGAGGGGACA
TTGATAAAGAGATTCCATCAAGGCCTGTTTACCTGAAAGACCTTCTAAGACAATACAAAGGTGAACTGTATGTTCCGGAAGAGGCATTCAAGTACCGTGCATCAGAGGTGGGTGATTTCAACAGTAGACTGAAGACATTGCCAAAAATGCACTTGAAAGACTTACTCAAGGTGATGCGGGCAAATCAGATTGAAATGCTG
ACATCAAGGGCTGTCCAGACTCCAGAGGGAGTTTATGTGTATCGTGACTTCATTATAGATTTGAAAGGATTTCCGGTAGAGAAGAACTTACAGAGAAAGAAGTGGACCATACATTTGTCAGAGAAAGAAGCACAAGCTGTTTTAGGGGAGTATTCAGGGCCACAGCGCGAAGTTGAAAGGCTATTAACGCCTTATGTAGT
TCCACCATCTGTTATGCCTCATTCTGTGGCATCTTCTATCTCAAGCAGAGTGATGATTGAGCTTACAATGATAACAAGTGTAGTAACTGCTGCTGCATTCACAGTGGGAGGTCTTGTATCAGCAATGGTCTTTGCACTTACCGGTGTACTGTCTGTTATTGCGGTCAATTTTGTCTGGCCCGTGGCATTTTCTTTGCTTA
AGGCTGTTGCTGTGCTTCTTCTAAGATGTGCAAAGACAGTGTGGAAAATGTTGGCTACAGTGGGTAGCATGGGAGGACTTCTCGGGCGTTACCCAAGAGTTTCTGCTTTTTTAGCATCTGGTGGTTTCTGGGCATTGCTTCAGGCATTATTTTTTATTGTAGTTATAATCATAACCATGGCCATTCTTATAAGGTTTACT
CTTATAAGGAGACCAAAAGATTTCAGAAAATGGGATATATGGCAAGCTATTGAGTTTGGGCAGTCAAAACCACATGCCCGAGTAGAGGGTTCAACTGGAGTTACATTTAAAGATGTTGCAGGTATTGATGAAGTAGTAGGGGAGTTGAAAGAGTTGGTGAGATATTTGAAGAATCCAGAATTGTACACTAAAATGGGAAC
AAAAGCTCCTCATGGGGTACTCCTAACAGGTCCTCCTGGCTGTGGAAAGACTTTGTTGGCAAAGGCAATAGCTGGAGAAGCTGGTGTACCTTTCTACCAAATGGCTGGGTCTGAGTTTGTTGAAGTGCTTGTTGGAGTTGGTGCAGCTCGTGTCCGTGACCTCTTTAAAAGAGCAAAGGTAAACAAACCCTCAGTGGTCT
TCATTGATGAAATCGATGCTTTGGGAGCAATGATGGTCAGGAGCAGAGCTTGCCCAGCTTCTTCAGGAGGCTGCTTTGGTGGCTGTTAGGCATGGCCATGATTCAATTCTTCAATCTGACATGAATAACGCAGTCGACAGGCTTACAATGGGGCCAGAGCGTAAAGGTATAGATCAGATATCACCATTTCTCTGGCGGAG
GGCAACAGCTGAAGTTGGCATTGCTTTGGCATCGCATCTTTTGCGGCGTGTGGAGAATGCCCGTGTTGAATGTTGTGATCGAATATCTATAATTCCTCGTGGTGAGACATTTTCACGAACTATTTTTAACCGGCTTGATGAGGAGGCTTATATTTTTGAGAGGCGACCCCAACTGCTCCATCGAATGCAGGTAATGCTAG
GGGGCAGGGCAGCTGAAGAAGTGATGTATGGACGCAATACATCGACAGTGTCATTAACATACCTCCCAGATGCATCTTGGCTCGCGCGCAAAATCATTTCTATATGGAACATGGAGAATCCCATGGTTATACATGGAGAAGCAGCACCCTGGAAACGTGATCCAAGCTTTACTGGTCCACCTTTGAATTTTGAAGGTTCA
CTGTATGACGATTATGGTCTCTATGAAAAATCTGTCAACTACAATCTGGATAATGATACCGTTCTCAGGACAGAGAAATTGCTGAATGATATGTACCAGCAGATATTTAAGTTGGTACAACACTATCATGCAGCTTTGGCCAAAGCTGTTTATGTTATCATGGAAATGCAGGAGATTACTGGTGCTGACCTTGACATCAT
AATTGATCAATATCCCGCAGATACCCCTGTGCATCTTGTAGAAGAGGAGGACAATCCAGGAAGCTTGCCTCCAAGGGTGGGAGTTAAGCAAATGCTTCCTTTGGAGGCATCAGAATCGTCAACTATATCCTGGAAGAAGACCAGTCATGAAGAAGAGAAGCTTAGCTCCAAGACCGTTACTTAGTACTTATGTATCAGAA
AGCAGATGTGATTGGTTGACTGCCCTGAAAGATGATATGGAGGGTGAAATTCAGAGTGCAACAAGCGATTACGTGCAGAAAATGGAGGTGCGAGAAATTAACGAGGAATTTTTCATCTGGGACCCGAGGAATTTCTTTGCACTTGTGCCTTGTTATAGGCAAGAGAAAATTGTGCATTCGGAAATGCCGAGGTAATTATT
TTGCTCATTTTTCAAAATAATGCCTTCATTTTGAAGATGGAAGATTAGCTTTGTAAAGCACATGAAATGTGGTTTAAAGTTAACATCATTATGTGCTGAAGGCCTATGAATTATGAAACTTTTGGCTTCAGTGGCTTCTTCCAATGTTAGTGCTATTCTATTTTTTCTGCAAAGATGCAAGTTCAATGATATAACTCCTC
CCAAGTTCCTAGGGCCTAGGGATGTGAATACCTTTAGCGTTGTTTGGACATTGATTGGGTTAATGTGTAATCTCCAATCTCTTTGTTAAATGCACGAATTTAAGAAGTATCATTTATTTCATGTGGAA
>TRINITY_DN42547_c0_g2_i4 from sample A9 / Example unspliced isoform:GAAAAAGCGCAGAGAGTTTTAATTCTTAGTCATCGCGCGTGTGAATACTTCGTTGGGGCGACAAGGGATCAGGCGAAGTGTTGTTTGGGAGAATCCTACAGGCAGGGAGATAATCGATTAGGAGGAACGCAAGGAGTTTGCAGAAGAATTCGACGAGCCCCCCACAAAGAAGAAGCGAAGCAACCCAGGACGAGAGAGCA
CACGTAGACGCTGTTAGAAGGACGCAGGCAGATAAACGGAAAATAAGAGCCATCCCAAGCAGAGAATAATCCTGGAAAAAGAAAGAGCAGTTAATAGTAGAAAGCCTAGCCAGCGGAGAAGATTCCAATCCTCTCCGACAGGAAAGAATCCAGTTCTAACCCGACAAGCAAAGCAAAGAAGAGACTCTGTTCTGTGCCCT
AGCAGACCTTTCAGAAGGAGAATGTTCAATGCGTGAAATGCTTTGAAGGAGGCATTTGTTTAAAAAGAGACTCTGTTCTGTGCCCTAGCAGACCTTTCAGAAGGAGAATGTTCAATGCGTGAAATGCTTTGAAGGAGGTCAAAGTACATGCAAAGCTGAAATGATGTTATCTGGGCCAGTGAAATGTTTTGATGTTCAGT
GTATTCCTTCCAAAGATGCCAGTCCACTTCCTCTCTTACCAGTGAACAGCATTAAAACGGGCTTCTATTTTCATGGACAGCAAAGCTATGGGGGCAGAGTACACTTTAGTGGTAAAACATCAATACGAATGAGCAGAACAAAGTCACACAATAGAGGCATTTTCTTTGATAGAAGAGAAATCTTTGGTCAGCTATATACT
CCTATTCTAAAGGAAAGAAGATATCTTACTAAAGTGCATGCATCTTCCTCATCAACAACAAATAGAGGTGGAAGTCGAAATTCTTCACAGTATAAAAAAAAGAAGTCAGAAGATTATGTTAGCAGATTTTTAAGAGAAAACCCAAGTGGGATAGAACAAAAGTTTCTTATAGGAGATGAACTTTATACTTTGGAAGAAAG
GGAGAAGTTGAAAACTTCAGTTCTGAAGCGAATCAAGAATGCATTAAGTGAACTTGCTATCAAATCAGTCCCAAGTGATATCCAAGCCCAGGAGGGAATCAAGAATGCATTAAGTGAACTTAAAGGCAACTTACTCTCAAAGGATATCCAAGAGACAGAGCAAATAGAAGAGAAACATCATGAAGCACCTAGAGGGGACA
TTGATAAAGAGATTCCATCAAGGCCTGTTTACCTGAAAGACCTTCTAAGACAATACAAAGGTGAACTGTATGTTCCGGAAGAGGCATTCAAGTACCGTGCATCAGAGGTGGGTGATTTCAACAGTAGACTGAAGACATTGCCAAAAATGCACTTGAAAGACTTACTCAAGGTGATGCGGGCAAATCAGATTGAAATGCTG
ACATCAAGGGCTGTCCAGACTCCAGAGGGAGTTTATGTGTATCGTGACTTCATTATAGATTTGAAAGGATTTCCGGTAGAGAAGAACTTACAGAGAAAGAAGTGGACCATACATTTGTCAGAGAAAGAAGCACAAGCTGTTTTAGGGGAGTATTCAGGGCCACAGCGCGAAGTTGAAAGGCTATTAACGCCTTATGTAGT
TCCACCATCTGTTATGCCTCATTCTGTGGCATCTTCTATCTCAAGCAGAGTGATGATTGAGCTTACAATGATAACAAGTGTAGTAACTGCTGCTGCATTCACAGTGGGAGGTCTTGTATCAGCAATGGTCTTTGCACTTACCGGTGTACTGTCTGTTATTGCGGTCAATTTTGTCTGGCCCGTGGCATTTTCTTTGCTTA
AGGCTGTTGCTGTGCTTCTTCTAAGATGTGCAAAGACAGTGTGGAAAATGTTGGCTACAGTGGGTAGCATGGGAGGACTTCTCGGGCGTTACCCAAGAGTTTCTGCTTTTTTAGCATCTGGTGGTTTCTGGGCATTGCTTCAGGCATTATTTTTTATTGTAGTTATAATCATAACCATGGCCATTCTTATAAGGTTTACT
CTTATAAGGAGACCAAAAGATTTCAGAAAATGGGATATATGGCAAGCTATTGAGTTTGGGCAGTCAAAACCACATGCCCGAGTAGAGGGTTCAACTGGAGTTACATTTAAAGATGTTGCAGGTATTGATGAAGTAGTAGGGGAGTTGAAAGAGTTGGTGAGATATTTGAAGAATCCAGAATTGTACACTAAAATGGGAAC
AAAAGCTCCTCATGGGGTACTCCTAACAGGTCCTCCTGGCTGTGGAAAGACTTTGTTGGCAAAGGCAATAGCTGGAGAAGCTGGTGTACCTTTCTACCAAATGGCTGGGTCTGAGTTTGTTGAAGTGCTTGTTGGAGTTGGTGCAGCTCGTGTCCGTGACCTCTTTAAAAGAGCAAAGGTAAACAAACCCTCAGTGGTCT
TCATTGATGAAATCGATGCTTTGGGAGCAATgtcagagtaatggtgaaaaatacgatgctggtgcacaggaaagggagacaactttgaaccagcttttaatagagcttgatggatttgacactggtcagggagtcatatttttgggtgcgactaatcgtatggatctactagatcctgcattattgcggccaggccgttt
tgatcgcaagattaaagtaagtcctcctggggcaaaggggcgactggagattcttaaagtccatgcaaatagagtgaagctatcaccttccgttgacctttctgtttatgccaacaatctaccagGATGGTCAGGAGCAGAGCTTGCCCAGCTTCTTCAGGAGGCTGCTTTGGTGGCTGTTAGGCATGGCCATGATTCAA
TTCTTCAATCTGACATGAATAACGCAGTCGACAGGCTTACAATGGGGCCAGAGCGTAAAGGTATAGATCAGATATCACCATTTCTCTGGCGGAGGGCAACAGCTGAAGTTGGCATTGCTTTGGCATCGCATCTTTTGCGGCGTGTGGAGAATGCCCGTGTTGAATGTTGTGATCGAATATCTATAATTCCTCGTGGTGAG
ACATTTTCACGAACTATTTTTAACCGGCTTGATGAGGAGGCTTATATTTTTGAGAGGCGACCCCAACTGCTCCATCGAATGCAGGTAATGCTAGGGGGCAGGGCAGCTGAAGAAGTGATGTATGGACGCAATACATCGACAGTGTCATTAACATACCTCCCAGATGCATCTTGGCTCGCGCGCAAAATCATTTCTATATG
GAACATGGAGAATCCCATGGTTATACATGGAGAAGCAGCACCCTGGAAACGTGATCCAAGCTTTACTGGTCCACCTTTGAATTTTGAAGGTTCACTGTATGACGATTATGGTCTCTATGAAAAATCTGTCAACTACAATCTGGATAATGATACCGTTCTCAGGACAGAGAAATTGCTGAATGATATGTACCAGCAGATAT
TTAAGTTGGTACAACACTATCATGCAGCTTTGGCCAAAGCTGTTTATGTTATCATGGAAATGCAGGAGATTACTGGTGCTGACCTTGACATCATAATTGATCAATATCCCGCAGATACCCCTGTGCATCTTGTAGAAGAGGAGGACAATCCAGGAAGCTTGCCTCCAAGGGTGGGAGTTAAGCAAATGCTTCCTTTGGAG
GCATCAGAATCGTCAACTATATCCTGGAAGAAGACCAGTCATGAAGAAGAGAAGCTTAGCTCCAAGACCGTTACTTAGTACTTATGTATCAGAAAGCAGATGTGATTGGTTGACTGCCCTGAAAGATGATATGGAGGGTGAAATTCAGAGTGCAACAAGCGATTACGTGCAGAAAATGGAGGTGCGAGAAATTAACGAGG
AATTTTTCATCTGGGACCCGAGGAATTTCTTTGCACTTGTGCCTTGTTATAGGCAAGAGAAAATTGTGCATTCGGAAATGCCGAGGTAATTATTTTGCTCATTTTTCAAAATAATGCCTTCATTTTGAAGATGGAAGATTAGCTTTGTAAAGCACATGAAATGTGGTTTAAAGTTAACATCATTATGTGCTGAAGGCCTA
TGAATTATGAAACTTTTGGCTTCAGTGGCTTCTTCCAATGTTAGTGCTATTCTATTTTTTCTGCAAAGATGCAAGTTCAATGATATAACTCCTCCCAAGTTCCTAGGGCCTAGGGATGTGAATACCTTTAGCGTTGTTTGGACATTGATTGGGTTAATGTGTAATCTCCAATCTCTTTGTTAAATGCACGAATTTAAGAA
GTATCATTTATTTCATGTGGAA