NA ----> NA
Intron 1 ATCGAGTCTG ... GCTTTTCGAC
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 95.45 | 1 | 21 | 2 |
| A2 | 100 | 0 | 8 | 2 |
| A3 | 100 | 0 | 22 | 0 |
| A4 | 85.71 | 1 | 6 | 2 |
| A5 | 100 | 0 | 4 | 0 |
| A6 | 96.55 | 1 | 28 | 0 |
| A7 | 93.75 | 6 | 90 | 8 |
| A8 | 81.4 | 16 | 70 | 2 |
| A9 | 88.3 | 11 | 83 | 3 |
| A10 | 79.45 | 15 | 58 | 1 |
>TRINITY_DN48684_c0_g1_i13 from sample A10 / Example spliced isoformGAAGTTGGCGCAGGCTTCAGGTTCTTTGCTAGTTAGTTTTGACTGTTGATTGATTTGAAACGTGTAAAAATGTGGTTCGACATCGAGGAAGAAGATAACAGGAGATAATTCAGAGAGAAGGTACGTCCATTGTTCGCACATCATTCCGACGCATTCTTTCGGAGTTGAATTTGGGGTTAACCCACTTCAAGGTATGGCTA
TGGGATAAAATGATTTTATAAAAGTCTGATTCACCAGATTTCACTAAATACGATTCTCGCTAC
>TRINITY_DN48684_c0_g1_i17 from sample A10 / Example unspliced isoform:CCGCTCCCACTACCAAAAAGCTCTTGTGACCGTTTGAAAGGATTTCTTTTCCATAATTGCGTTGGTTTGGTTTGTTCACTTTACTGCATAGCCATGCATGGCGTCTGTTACAGTGCATTTTCTTTATTGATTTTTCCATTTGTTTGGATTGTGATGGGTGCTTTTTCTTGTTTTTTCTCTTTTTTTTTTTCGTTTATTTT
CCTTTGGTTTTGCATTGCTGGCCAGGGATTTTATTTACTTGCAGGATGCTGAGAAGAAGAAACATGGGTAGAGATAAAACCCATCATCTTGGATTTCGACGAAGTTACCAGCAGACAAGTTGCCGAGATGAGATGAAGGATTAAGTACGAAGAATATGATAAGAACCGTGATTTTGGATTCTGTGAAGATAATGAAGTGA
TAGGTAAAAATGTGGTTCGACatcgagtctgaagtatttgagctgtgatttctgtatctgaagtagggaggtctttcgtttctcattttgtctgaagttggcgcaggcttcaggtacgtccaatgtcaggcttttcgacATCGAGGAAGAAGATAACAGGAGATAATTCAGAGA
Intron 2 GTATGTTGGA ... ACAAGTAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.43 | 4 | 10 | 6 |
| A2 | 16.67 | 20 | 4 | 1 |
| A3 | 50 | 11 | 11 | 3 |
| A4 | 45.45 | 12 | 10 | 3 |
| A5 | 50 | 3 | 3 | 3 |
| A6 | 33.33 | 22 | 11 | 5 |
| A7 | 41.18 | 60 | 42 | 10 |
| A8 | 32.5 | 54 | 26 | 3 |
| A9 | 28.87 | 69 | 28 | 8 |
| A10 | 34.65 | 83 | 44 | 6 |
>TRINITY_DN43736_c0_g2_i11 from sample A9 / Example spliced isoformTGTTTGTTCAGTATATTGCACTGCATTTTCTTTATTGATTTTTCCATTTGTTTGGACTGTGATTGGTGCTTTTTCTTGTTTTTTCTCTTTTTTTTCGTTTCTTTTCCTTTGGTTTTGCATTGTTTGCCAGGGTTTTTATTTACTTGCAGGATGTTGAGAAGAAAGAAACATGGGTAGAGATAAAACCCATCATCTTGGAT
TTCGACGAAGTTACCAGCAGAGGATGGTTTGCCATAAAAGAAGAAGCTATACACTAAAAGCTTCGGCGGTCTCACAAATGGTTTGGGTTGCAGAGAAGTTTCCGAGATGAGATGAAGGATTAAGTACGGAGAATATGATAAGATCCGTGATTTTGGATTCTGTGAAGATAATGAAGTGACAAGTACAGAATGGCTGCCAT
CTGGTCAATTATGATTCTGCATAAAGATCGCTAACATAAATGTTCTAAAACTTGTAAATTAGTTTTGACTGGTAATTGATTTGAAACAGGTAAAAATGTGGTTCGACATCGAGTCTGAAGTATTTGAGCTGTGATTTCCGTAATGGGACATAAAATGATTTTATTAAAGTCATGGGACATAAAATGATTTTATTAAAGTC
ATGGGACATAAAATGATTTTATT
>TRINITY_DN43736_c0_g2_i2 from sample A9 / Example unspliced isoform:CTTTTTATTTCTTTTCAATTGCGTTGCTTTGGCGTCTGTTACAGTGCATTTTCTTTATTGGTTTTTCCATTTGTATGGATTGTGATTAGTGCTTTTTCTTGTTTTTTCTTTTCTTTTTCGTTTCTTTTCCTTTGGTTTTGCATTGTTTGCCAGGGTTTTTATTTACTTGCAGGATGTTGAGAAGAAAGAAACATGGGTAG
AGATAAAACCCATCATCTTGGATTTCGACGAAGTTACCAGCAGgtatgttggaagctagcttggttgataactgttatgcatagagatctaatagttgttttagttatagtgatagagttaatcatttggttaatgatctgaaatgaactcttatatgcaacaagtaaagAGGATGGTTTGCCATAAAAGAAGAAGCTAT
ACACTAAAAGCTTCGGCGGTCTCACAAATGGTTTGGGTTGCAGAGAAGTTTCCGAGATGAGATGAAGGATTAAGTACGGAGAATATGATAAGATCCGTGATTTTGGATTCTGTGAAGATAATGAAGTGACAAGTACAGAATGGCTGCCATCTGGTCAATTATGATTCTGCATAAAGATCGCTAACATAAATGTTCTAAAA
CTTGTAAATTAGTTTTGACTGGTAATTGATTTGAAACAGGTAAAAATGTGGTTCGACATCGAGTCTGAAGTATTTGAGCTGTGATTTCCGTAATGGGACATAAAATGATTTTATTAAAGTCATGGGACATAAAATGATTTTATTAAAGTCATGGGACATAAAATGATTTTATT
Intron 3 ATCGAGTCTG ... TTTTTTCGAC
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 93.33 | 1 | 14 | 0 |
| A2 | 100 | 0 | 6 | 1 |
| A3 | 100 | 0 | 12 | 0 |
| A4 | 75 | 1 | 3 | 0 |
| A5 | 100 | 0 | 2 | 0 |
| A6 | 92.31 | 1 | 12 | 0 |
| A7 | 88 | 6 | 44 | 0 |
| A8 | 70.91 | 16 | 39 | 2 |
| A9 | 79.25 | 11 | 42 | 0 |
| A10 | 73.68 | 15 | 42 | 1 |
>TRINITY_DN48684_c0_g1_i13 from sample A10 / Example spliced isoformGAAGTTGGCGCAGGCTTCAGGTTCTTTGCTAGTTAGTTTTGACTGTTGATTGATTTGAAACGTGTAAAAATGTGGTTCGACATCGAGGAAGAAGATAACAGGAGATAATTCAGAGAGAAGGTACGTCCATTGTTCGCACATCATTCCGACGCATTCTTTCGGAGTTGAATTTGGGGTTAACCCACTTCAAGGTATGGCTA
TGGGATAAAATGATTTTATAAAAGTCTGATTCACCAGATTTCACTAAATACGATTCTCGCTAC
>TRINITY_DN48684_c0_g1_i12 from sample A10 / Example unspliced isoform:TAATTGCGTTGGTTTGGTTTGTTTGTGGTCCATGTTTGTTCAGTTCACTGCATAGCCATGCATGGCGTCTGTTACAGTGTGCATTTTCTTTATTGATTTTGCCATTTGTGATTGGTGCTTTTTTCTTGTTTTTTTTCTTCTCTTTCGTTTCTTTTTCTTTGGTTTTGCATTGTTTACTAGGGATTTTATTTACTTGCAGG
ATGTTGAGAAGAAGAAACATGGGTAGAGATAAAACCCATCATCTTGGATTTCGACGAAGTTACCAGCAGTGAAGTTGCCTAGATGAGATGAAGGATTAAGTACGAAGAATATGATAAGATCCGTGATTTTGGATTCTGTGAAGTTAATTAAGTGACAGGTAAAAATGTGGTTCGACatcgagtctgaagtatttgagctg
tgatttctgtatctgattggcaggctgtgtatcctgccggcgaagtagggaggtctttcgtttctcattttttcgacATCGAGGAAGAAGATAACAGGAGATAATTCAGAGA