sp|Q8LL04|CPL3_ARATH ----> RNA polymerase II C-terminal domain phosphatase-like 3
Intron 1 GTCAGATCTA ... TGCAAAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 76.47 | 2 | 4 | 9 |
| A2 | 20 | 2 | 0 | 1 |
| A3 | 20 | 4 | 1 | 1 |
| A4 | 40 | 6 | 5 | 3 |
| A5 | 47.37 | 5 | 7 | 2 |
| A6 | 39.39 | 10 | 2 | 11 |
| A7 | 26.32 | 7 | 3 | 2 |
| A8 | 45.45 | 3 | 3 | 2 |
| A9 | 45.45 | 3 | 1 | 4 |
| A10 | 33.33 | 4 | 1 | 3 |
>TRINITY_DN31940_c0_g1_i1 from sample A6 / Example spliced isoformATGTTCAATGCAAGAAAGCTCAGCCTTGTGCTGGATCTTGATCATACTCTTCTCAATTCAGCTATGTTCTCAGATATTGAGCCAGTTCATGAAGAAATGTTAAAGATAAAAGAGGAGAAAGATCAAGAGAGTCCTCATCGTCATCTTTTTCACTTACCAAACATCAGAATGTGGACAAAATTGCGGCCAGGGATTTGGCA
GTTTTTGGATAGGGCAAGCAAGTTGTATGAATTACATGTTTACACAATGGGTAGCAGAGTCTATGCCACAGAGATGACGAAAATTCTCGATCCTACAGGAAAACTATTTGCAGGACGTGTTATTTCTAAGGGTGATGAGGCTGATGTAGGTGGATTTGGAATATCTTCCAAAAGCAAAGACTTGGATGGGGTAATGGGTA
TGGAGTCTTCAGCAATTGTTATTGATGATACCGAGAAGATGTGGCCTCATCACAGGCCCAATTTGATTGTGGTTGAGAGGTATACATACTTCCCATGTAGTAGACGCCAATTTGGACTGGCAGGGCCCTCTCTGTTTGAGATTGATCATGATGAGGGGCCAGAAGATGGAATGTTGGCATCTACTTTACGGGTTATTGAA
GAAATACACAATGATTTTTTCTCAAAGAAACTGTTATTTGAAGTAGATGTCCGTGATCTTTTGGCAACTAAACAACACAGGGTTCTTATGGGTTGCAGAATAGTTTTCAGTAGGGTTTTTCCTATGGAAGAAGCCCAACCCCATCTGAACCATTTATGGCGGGTGGCTGAAAAATTTGGTGCTGAATGCACAACTCAAAT
TGATGAACATGTCACACATGTTGTAGCCATTTCCCTTGGAACTAGCAAGGTAAACTGGGGCTTGGCAACAGGGCGACATGTTGTTTGTACAGGCTGGCTTGAAACTTCAGCGCTTTTTTACCGCCGAGAGAATGAGAGGGATTTTCCTGTAACTACGTGGCAACAGAAATAATAGGCAGCCGTACAAAAAACCTCGTAAA
TTCATTGAGGTAAAATTTATTAATTTATAAACAAAATTGAAAACCAGAAGGGTCAGCCACCAATCTCAAACAAGAAAATGACTTCTTTAGATAGTCCCTTGTGTCTGGGGCAAGGTGTTGATTTGGAGGGCTGCCAAAGTTTGAGAGGGATATTAGTTTTCCCTGTTTTTCACTTCCTTCAAATTCATTTTATCCATGAA
GATCTAAGTTTTGAGATGGGAAAGCTTAGGTCTCAAATGCAACTTTGTTGTTTATTATAAGCACCCATGAGGAATTACTCATAAATGAGAGATGTGAGCGACATGAGTCATAAGGGGATTTTCATTTCAACCAGTATGTTGCCACTGTGATGAAGTTACAGCATATCAGGTACCAGCATTGATCGTTTATGTTCATAAAG
ATTGGCCCGAGTAGATTTGCAATTTAGAGCATAAACAATGTTCTTGAAATGCAAACTAGTTGGGGATGGCAAATGATTCTTTTGGGCAGGTTGCCTCGAGTGTAAAATAGAGAAACCGGAGGAATTGGGTGCTGCTGTGTTATATCCTACTGGTTTAAAGCAGCAACGTGCCAATTTACATGCTGTGGCAGTATTTTGCT
ATAGCATACATATAGGTTGCCACAAGGGAAACATATATGTAGAAGCTATATGATTGCAGTGAGCTTCATGTTTATTTAAGACAATAAAAACCACTAATCTATATTTTTATAGTACACAACTACCTTCACTGAACATAGTGTACAAAATCCCATTTGGCCTGGGGTTGCTTTAAAAGCACGTAGAGTAT
>TRINITY_DN31940_c0_g1_i2 from sample A6 / Example unspliced isoform:ATGTTCAATGCAAGAAAGCTCAGCCTTGTGCTGGATCTTGATCATACTCTTCTCAATTCAGCTATGTTCTCAGATATTGAGCCAGTTCATGAAGAAATGTTAAAGATAAAAGAGGAGAAAGATCAAGAGAGTCCTCATCGTCATCTTTTTCACTTACCAAACATCAGAATGTGGACAAAATTGCGGCCAGGGATTTGGCA
GTTTTTGGATAGGGCAAGCAAGTTGTATGAATTACATGTTTACACAATGGGTAGCAGAGTCTATGCCACAGAGATGACGAAAATTCTCGATCCTACAGGAAAACTATTTGCAGGACGTGTTATTTCTAAGGGTGATGAGGCTGATGTAGGTGGATTTGGAATATCTTCCAAAAGCAAAGACTTGGATGGGGTAATGGGTA
TGGAGTCTTCAGCAATTGTTATTGATGATACCGAGAAGATGTGGCCTCATCACAGGCCCAATTTGATTGTGGTTGAGAGGTATACATACTTCCCATGTAGTAGACGCCAATTTGGACTGGCAGGGCCCTCTCTGTTTGAGATTGATCATGATGAGGGGCCAGAAGATGGAATGTTGGCATCTACTTTACGGgtcagatct
atcctgagcttcaactatttgcaagaataaatctgtattgacagtttgttaacctgggactaactcttaaacatctataatgcaaagcagGTTATTGAAGAAATACACAATGATTTTTTCTCAAAGAAACTGTTATTTGAAGTAGATGTCCGTGATCTTTTGGCAACTAAACAACACAGGGTTCTTATGGGTTGCAGAAT
AGTTTTCAGTAGGGTTTTTCCTATGGAAGAAGCCCAACCCCATCTGAACCATTTATGGCGGGTGGCTGAAAAATTTGGTGCTGAATGCACAACTCAAATTGATGAACATGTCACACATGTTGTAGCCATTTCCCTTGGAACTAGCAAGGTAAACTGGGGCTTGGCAACAGGGCGACATGTTGTTTGTACAGGCTGGCTTG
AAACTTCAGCGCTTTTTTACCGCCGAGAGAATGAGAGGGATTTTCCTGTAACTACGTGGCAACAGAAATAATAGGCAGCCGTACAAAAAACCTCGTAAATTCATTGAGGTAAAATTTATTAATTTATAAACAAAATTGAAAACCAGAAGGGTCAGCCACCAATCTCAAACAAGAAAATGACTTCTTTAGATAGTCCCTTG
TGTCTGGGGCAAGGTGTTGATTTGGAGGGCTGCCAAAGTTTGAGAGGGATATTAGTTTTCCCTGTTTTTCACTTCCTTCAAATTCATTTTATCCATGAAGATCTAAGTTTTGAGATGGGAAAGCTTAGGTCTCAAATGCAACTTTGTTGTTTATTATAAGCACCCATGAGGAATTACTCATAAATGAGAGATGTGAGCGA
CATGAGTCATAAGGGGATTTTCATTTCAACCAGTATGTTGCCACTGTGATGAAGTTACAGCATATCAGGTACCAGCATTGATCGTTTATGTTCATAAAGATTGGCCCGAGTAGATTTGCAATTTAGAGCATAAACAATGTTCTTGAAATGCAAACTAGTTGGGGATGGCAAATGATTCTTTTGGGCAGGTTGCCTCGAGT
GTAAAATAGAGAAACCGGAGGAATTGGGTGCTGCTGTGTTATATCCTACTGGTTTAAAGCAGCAACGTGCCAATTTACATGCTGTGGCAGTATTTTGCTATAGCATACATATAGGTTGCCACAAGGGAAACATATATGTAGAAGCTATATGATTGCAGTGAGCTTCATGTTTATTTAAGACAATAAAAACCACTAATCTA
TATTTTTATAGTACACAACTACCTTCACTGAACATAGTGTACAAAATCCCATTTGGCCTGGGGTTGCTTTAAAAGCACGTAGAGTAT