NA ----> NA
Intron 1 GTATATGTTT ... GAAATTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75 | 1 | 2 | 3 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | 50 | 1 | 0 | 1 |
| A5 | 50 | 1 | 0 | 1 |
| A6 | 50 | 5 | 0 | 5 |
| A7 | 53.85 | 12 | 1 | 14 |
| A8 | 50 | 12 | 2 | 12 |
| A9 | 52.63 | 9 | 0 | 10 |
| A10 | 50 | 2 | 0 | 2 |
>TRINITY_DN39474_c0_g1_i4 from sample A8 / Example spliced isoformGAAGAATCTACAGCAGGTTGAAGTTTATTATACTGTTTTATGTGATGGAGTCATACAAGAGATGCTAGCAAAGTCGCATTCTAAATAGCTACTTCTACGCATGTTCCTGTAAGTTTTGGTTATGCAAATGTTCTTAAAGTTTGTTTTTAAAGTTTTGTGGTGACCCGCTGGTTTCATGAAGGTAGCCTTATCTTGAGAAG
TCCGCGAACAAGTTCGACAGAGAAATCTGAAATCGGCGAAATTGAGTGCACGGATTTCCACAGAGCCTTGGTTTAAGTAGGCTCATGAAGTATACAAGACGCAGAGAATAGATCTAAAATTCTCATAAAAGATCAACCATGAAGCAGATCCTTTAAAGTTGGAAAAAGATCAACCCTGAAGAAGATCCTTGAAAGTTGGA
AAGCCCTTTAAAGGAAGGCCATGAAAGTTATTATCAGAAACTGCTCTTCAGTTATCTTGATAGTCATGGGAGTATTTCTGTCTGAGTTCACTCCTGAGCAACTAGCCTTCTATGAACAGCAGTTGAAGAATGGTGTCTTTGTTATTCCCAATCCACTTGTAAACTGGCTAGAGTGGTATCTCTTAGAAAGGAATCAACAA
ATTCTGTTCCAGAAAATCCAGAAACTTGCAGAAGTCTTTTCGCGCGCCATACCTGTTGAAGAACCTTCAATCCCAGGTGTCGAAGGTGGTGGGAAAGAGTGGACTACACTTTCCACTAATCAACGCAGATTATCTGTTGCATTAGATTATCTTATTACTGAAAGCAGACTTTTCAAGACGCTTCCGTCTTACGAATCTAC
ACCCATTGTTGGACCCGTGCCAAAGTTCACTACCGAGCGACTAGCCTATTACGACGAGCAATTGAAGAAAGGTGTGTTTGTTATTCCCCCCAATGCACTTGGAAATTGGCAAGAGTGGTATATCCTCGAAAGGAATCAACGAATTCTCTTCCAGAAAATCCAGAAACTCGCAGAAGTCTTGTCGTGCGCCAAACCTGTTG
AACCTTCAGTCCTTGGTGTCGAAGGTTGTGGGAAAGAGTGGACTACTCTTAGTGTTAATCAAAAGAGGTTATCTGATGCATTAGATAATCTTCTTGCTGCAAAACCCAAGCCAACTCCTCAATGCCAATGCCATGCCATTGCCATTGCCGTTGCCGGTAGATGATCTTGAATGAGGCCTGGAATTTCAAATTTTAAGTGC
CTGTCAATTGTCAATTCAAAATTTGATAACAGCTACATGTTTTGGCCCGTCATTTTACGTTTTATACCAGTTCATAGAGTGTAATTGCTATCCACTAATAAAGAGGAGTTCTATCTGTTGTTTGTTTTATTAATTTAGTAGTACGGGAAGCTCACCCTTTCCATGATGGGCTTTGGAATATGTATTTATTATGTTCCTGA
TATATATTTTTTGGTCGGGGGCATTAGTTTGGGTATTACTGTGTCATTTCACGGCAG
>TRINITY_DN39474_c0_g1_i5 from sample A8 / Example unspliced isoform:TGGTGACCCGCTGGTTTCATGgtatatgtttttagagttttgttgttttactttaattatagtagcacaatttggttgttttgacataattagaattcttagaatatttggtatagatatgatacgaatatagattaatagattcttctactactgcttgttctctaattatataaattctttgtactggaaattgtagA
AGGTAGCCTTATCTTGAGAAGTCCGCGAACAAGTTCGACAGAGAAATCTGAAATCGGCGAAATTGAGTGCACGGATTTCCACAGAGCCTTGGTTTAAGTAGGCTCATGAAGTATACAAGACGCAGAGAATAGATCTAAAATTCTCATAAAAGATCAACCATGAAGCAGATCCTTTAAAGTTGGAAAAAGATCAACCCTGA
AGAAGATCCTTGAAAGTTGGAAAGCCCTTTAAAGGAAGGCCATGAAAGTTATTATCAGAAACTGCTCTTCAGTTATCTTGATAGTCATGGGAGTATTTCTGTCTGAGTTCACTCCTGAGCAACTAGCCTTCTATGAACAGCAGTTGAAGAATGGTGTCTTTGTTATTCCCAATCCACTTGTAAACTGGCTAGAGTGGTAT
CTCTTAGAAAGGAATCAACAAATTCTGTTCCAGAAAATCCAGAAACTTGCAGAAGTCTTTTCGCGCGCCATACCTGTTGAAGAACCTTCAATCCCAGGTGTCGAAGGTGGTGGGAAAGAGTGGACTACACTTTCCACTAATCAACGCAGATTATCTGTTGCATTAGATTATCTTATTACTGAAAGCAGACTTTTCAAGAC
GCTTCCGTCTTACGAATCTACACCCATTGTTGGACCCGTGCCAAAGTTCACTACCGAGCGACTAGCCTATTACGACGAGCAATTGAAGAAAGGTGTGTTTGTTATTCCCCCCAATGCACTTGGAAATTGGCAAGAGTGGTATATCCTCGAAAGGAATCAACGAATTCTCTTCCAGAAAATCCAGAAACTCGCAGAAGTCT
TGTCGTGCGCCAAACCTGTTGAACCTTCAGTCCTTGGTGTCGAAGGTTGTGGGAAAGAGTGGACTACTCTTAGTGTTAATCAAAAGAGGTTATCTGATGCATTAGATAATCTTCTTGCTGCAAAACCCAAGCCAACTCCTCAATGCCAATGCCATGCCATTGCCATTGCCGTTGCCGGTAGATGATCTTGAATGAGGCCT
GGAATTTCAAATTTTAAGTGCCTGTCAATTGTCAATTCAAAATTTGATAACAGCTACATGTTTTGGCCCGTCATTTTACGTTTTATACCAGTTCATAGAGTGTAATTGCTATCCACTAATAAAGAGGAGTTCTATCTGTTGTTTGTTTTATTAATTTAGTAGTACGGGAAGCTCACCCTTTCCATGATGGGCTTTGGAAT
ATGTATTTATTATGTTCCTGATATATATTTTTTGGTCGGGGGCATTAGTTTGGGTATTACTGTGTCATTTCACGGCAG
Intron 2 GTAAGTTTTG ... GAAATTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10 | 9 | 1 | 2.5 |
| A2 | 11.11 | 8 | 1 | 0 |
| A3 | 0 | 15 | 0 | 0 |
| A4 | 0 | 10 | 0 | 0.5 |
| A5 | 0 | 2 | 0 | 0.5 |
| A6 | 5.71 | 33 | 2 | 3 |
| A7 | 7.23 | 77 | 6 | 8 |
| A8 | 6.78 | 55 | 4 | 6.5 |
| A9 | 10.53 | 68 | 8 | 5.5 |
| A10 | 0 | 31 | 0 | 1 |
>TRINITY_DN42022_c0_g1_i1 from sample A7 / Example spliced isoformGTCATGATTTGCATCTCCTCTGCCTGAAGAATCTACAGCAGGTTGAAGTTTATTATACTGTTTTATGTGATGGAGTCATACAAGAGATGCTAGCAAAGTCGCATTCTAAATAGCTACTTCTACGCATGTTCCTAAGGTAGCCTTATCTTGAGAAGTCCGCGAACAAGTTCGACAGAGAAATCTGAAATCGGCGAAATTGA
GTGCACGGATTTCCACAGAGCCTTGGTTTAAGTAGGCTCATGAAGTATACAAGACGCAGAGAATAGATCTAAAATTCTCATAAAAGATCAACCATGAAGCAGATCCTTTAAAGTTGGAAAAAGATCAACCCTGAAGAAGATCCTTGAAAGTTGGAAAGCCCTTTAAAGGAAGGCCATGAAAGTTATTATCAGAAACTGCT
CTTCAGTTATCTTGATAGTCATGGGAGTATTTCTGTCTGAGTTCACTCCTGAGCAACTAGCCTTCTATGAACAGCAGTTGAAGAATGGTGTCTTTGTTATTCCCAATCCACTTGTAAACTGGCTAGAGTGGTATCTCTTAGAAAGGAATCAACAAATTCTGTTCCAGAAAATCCAGAAACTTGCAGAAGTCTTTTCGCGC
GCCATACCTGTTGAAGAACCTTCAATCCCAGGTGTCGAAGGTGGTGGGAAAGAGTGGACTACACTTTCCACTAATCAACGCAGATTATCTGTTGCATTAGATTATCTTATTACTGAAAGCAGACTTTTCAAGACGCTTCCGTCTTACGAATCTACACCCATTGTTGGACCCGTGCCAAAGTTCACTACCGAGCGACTAGC
CTATTACGACGAGCAATTGAAGAAAGGTGTGTTTGTTATTCCCCCCAATGCACTTGGAAATTGGCAAGAGTGGTATATCCTCGAAAGGAATCAACGAATTCTCTTCCAGAAAATCCAGAAACTCGCAGAAGTCTTGTCGTGCGCCAAACCTGTTGAACCTTCAGTCCTTGGTGTCGAAGGTTGTGGGAAAGAGTGGACTA
CTCTTAGTGTTAATCAAAAGAGGTTATCTGATGCGTTAGATAATCTTCTTGCTGCAAAACCCAAGCCAACTCCTCAATGCCAATGCCATGCCATTGCCATTGCCGTTGCCGGTAGATGATCTTGAATGAGGCCTGGAATTTCAAATTTTAAGTGCCTGTCAATTGTCAATTCAAAATTTGATAACAGCTACATGTTTTGG
CCCGTCATTTTACGTTTTATACCAGTTCATAGAGTGTAATTGCTATCCACTAATAAAGAGGAGTTCTATCTGTTGTTTGTTTTATTAATTTAGTAGTACGGGAAGCTCACCCTTTCCATGATGGGCTTTGGAATATGTATTTATTATGTTCCTGATATATATTTTTTGGTCGGGGGCATTAGTTTGGGTATTACTGTGTC
ATTTCACGGCAGAATTGGAAGGTTTCGCAAAGGTTTAATGTCGATAGATGTTTTCCTGGTTTTTTCATATTTTCAAAATGGG
>TRINITY_DN42022_c0_g1_i2 from sample A7 / Example unspliced isoform:GTCATGATTTGCATCTCCTCTGCCTGAAGAATCTACAGCAGGTTGAAGTTTATTATACTGTTTTATGTGATGGAGTCATACAAGAGATGCTAGCAAAGTCGCATTCTAAATAGCTACTTCTACGCATGTTCCTgtaagttttggttatgcaaatgttcttaaagtttgtttttaaagttttgtggtgacccgctggtttc
atggtatatgtttttagagttttgttgttttactttaattatagtagcacaatttggttgttttgacataattagaattcttagaatatttggtatagatatgatacgaatatagattaatagattcttctactactgcttgttctctaattatataaattctttgtactggaaattgtagAAGGTAGCCTTATCTTGAG
AAGTCCGCGAACAAGTTCGACAGAGAAATCTGAAATCGGCGAAATTGAGTGCACGGATTTCCACAGAGCCTTGGTTTAAGTAGGCTCATGAAGTATACAAGACGCAGAGAATAGATCTAAAATTCTCATAAAAGATCAACCATGAAGCAGATCCTTTAAAGTTGGAAAAAGATCAACCCTGAAGAAGATCCTTGAAAGTT
GGAAAGCCCTTTAAAGGAAGGCCATGAAAGTTATTATCAGAAACTGCTCTTCAGTTATCTTGATAGTCATGGGAGTATTTCTGTCTGAGTTCACTCCTGAGCAACTAGCCTTCTATGAACAGCAGTTGAAGAATGGTGTCTTTGTTATTCCCAATCCACTTGTAAACTGGCTAGAGTGGTATCTCTTAGAAAGGAATCAA
CAAATTCTGTTCCAGAAAATCCAGAAACTTGCAGAAGTCTTTTCGCGCGCCATACCTGTTGAAGAACCTTCAATCCCAGGTGTCGAAGGTGGTGGGAAAGAGTGGACTACACTTTCCACTAATCAACGCAGATTATCTGTTGCATTAGATTATCTTATTACTGAAAGCAGACTTTTCAAGACGCTTCCGTCTTACGAATC
TACACCCATTGTTGGACCCGTGCCAAAGTTCACTACCGAGCGACTAGCCTATTACGACGAGCAATTGAAGAAAGGTGTGTTTGTTATTCCCCCCAATGCACTTGGAAATTGGCAAGAGTGGTATATCCTCGAAAGGAATCAACGAATTCTCTTCCAGAAAATCCAGAAACTCGCAGAAGTCTTGTCGTGCGCCAAACCTG
TTGAACCTTCAGTCCTTGGTGTCGAAGGTTGTGGGAAAGAGTGGACTACTCTTAGTGTTAATCAAAAGAGGTTATCTGATGCGTTAGATAATCTTCTTGCTGCAAAACCCAAGCCAACTCCTCAATGCCAATGCCATGCCATTGCCATTGCCGTTGCCGGTAGATGATCTTGAATGAGGCCTGGAATTTCAAATTTTAAG
TGCCTGTCAATTGTCAATTCAAAATTTGATAACAGCTACATGTTTTGGCCCGTCATTTTACGTTTTATACCAGTTCATAGAGTGTAATTGCTATCCACTAATAAAGAGGAGTTCTATCTGTTGTTTGTTTTATTAATTTAGTAGTACGGGAAGCTCACCCTTTCCATGATGGGCTTTGGAATATGTATTTATTATGTTCC
TGATATATATTTTTTGGTCGGGGGCATTAGTTTGGGTATTACTGTGTCATTTCACGGCAGAATTGGAAGGTTTCGCAAAGGTTTAATGTCGATAGATGTTTTCCTGGTTTTTTCATATTTTCAAAATGGG