sp|B9GE13|KN12F_ORYSJ ----> Kinesin-like protein KIN-12F
Intron 1 GTAAGGAGAA ... GTCTAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.42 | 65 | 0 | 21 |
| A2 | 16.67 | 75 | 0 | 15 |
| A3 | 25.22 | 86 | 0 | 29 |
| A4 | 40 | 21 | 3 | 14 |
| A5 | 30.77 | 9 | 0 | 4 |
| A6 | 50 | 7 | 0 | 7 |
| A7 | 17.72 | 65 | 0 | 14 |
| A8 | 21.9 | 82 | 2 | 23 |
| A9 | 13.45 | 103 | 1 | 16 |
| A10 | 10.39 | 69 | 0 | 8 |
>TRINITY_DN45319_c0_g1_i1 from sample A8 / Example spliced isoformCTGGTCATATTTATATATATATATATACTATTAGTAAAAACACTAATAAAAAAGTGTTGGGTGAAACATTGTTTGACAACAGCCAATGACAATAGCTTTAGTCAAATTTCGAGACAACACTATTTGACAATAGCCAATGACACTCGCTTAGCAGTCCAATTTCAATTTTACTTGTAACTCAAAAAAAAGTCCGAATAACA
AGCACCAAGAGAGCGAGGACTTAATGACTAGATTGAATGCCTCTGAGATGGAAAACATGAAGTTGAGAGAGAATATTGCTAAAGAGCTTGAAACTAATGAAAGATTATTTTCTGAGCTTCAGCAAAGCAATGATGTTCTTGAAGAAATCCGGAGGGAAAATGCTAAACACGCTGTAGATATGCAAGAGAGAGAAGCAGAG
ATGATTAGGCTCTTTCAGCAGAAGGAAGACATTTCGAATCACTTTTATGAAGTGGAGAGAGAGAAGGAAACAATGAAAGAAACTATGAGCAGTCAAAATGACAAACTTCAAGAATTAGCTGAGCAGATAGCTCTTAAAGATGATTATTTGAAGCAGCTTCAGGCTGTTTCTCTGCAATTGACAAAAGATAGCTGTTGTTC
CATTGATATAGCTGAAAAGCTCGAGGCCAAACTTTCTAGCTTGCAGGACAGAGTTTTCTCTGTCATTCCTGTGGAGAGTGCAGATGAAATGCTGGTCATAGAAAAATTCCTTAAATACATATCTGAACTTGAGGAGAATGCACATATGTTTTTAGCTAAAACTGAATTGCTTGAGTTGAACTTCAAAGATATGTTTTCAC
AGAATGCTGCATTAATATCAGAACTGCAGTGGAAAGAGGAAATTTTGAAAGGTTTGCAATTTGATTTGAGTTTATTGCAAGAGTCTGCATCCAAAGCAAAGGACCAAAAAGATGAAGTTCAGGAGACATCTGCAGCATTGAAATTGGTTCAAGAAGATCTATCGGCAAAAAATAATGAGCTCGACACAGTTATGTCTCAT
AATATAAGGCTAGAGATAGAGCTAATGGAGAAAGTAAGCGAAGTGACCAGTCTAAACGTAGAGCTTACAAAACTAACGGAGACTCTGGCCTCTGTCTCAAATGAAAACTCTCAGCTTGCAACTGATATTGAAGACCTATTAGCAAAGAGAAATTCTGCAGAAGAGGAAATGGAAGAGAAACAGAAAGTGATTGAAGGATT
AGAGGAAGAGCTCCTTGAAATGAGTTCTCTGGTAGATCACCAGATGATCAATTCAATTGAAAGCATGAAATGTGAATTGAACAATGTTATTCGAGAGAGGGACCGTCTTAATGCAGAAGTACTTGCCCTGAATGAACAGTTGGAAATGACCCAGGCTTTTGCAGATGAACGGGAAGCTATTGCTGTGGAAGCACGTCAGG
TTGCAGAGGCAAGGAAAACTTATGCAGAAGAGAAAGAAGAAGAGACTAAGCTTTTGGAACGTTCAGTTGAAGAACTAGAGCGTACAGTAAATGCATTAGAGAGCCAGGTGGACATTGTGAAACGGGAGGCTGAAAGGCAACGTCTGATGAGGGAGGATTTGGAATTGGAGCTGCAAGCCCTAAGACATCAGATGTCAGCA
ATGCAGAGTGCACAAACCTCTATGAACATCCAAAGCTCAAGTGAGTCCATGGAGAGCGCCAATGAAAACCCAAGGGTTATGGCAGGTAGAAAGCTTGATTTGCGAGAGGCACGCAAACAGATTAAAGTTCTAGAGAAAGAACTTGAAGAAAAAGATGTGGAGATTAAGAAGTGCAAAGCCCATATTACGGAATTGGTTAT
GAATGCAGAAACACAGGCAAGTGAGTACCAACAAAAGTATAAAGCATTGGAATCCATGGCAAATCAAGTGAAGGCTGAGCAAACGAACTCCAGTGCTATGGCTTCATATACGAATAAGACAGGGGAAAAGACTGCTGCTAAGTCTAGAGGTTCAGGGTCACCTTTCAAATGTATTGGTTTAGGTTTAGCCCAACAGATGA
ATTCAGAGAGGGATGAAGAGCTGCATGCTTCCAAGCGACGTATAGAAGAACTTGAAGGTCTTCTTGCAGCTCGACAAAAGG
>TRINITY_DN45319_c0_g1_i6 from sample A8 / Example unspliced isoform:AGGCAAGTGAGTACCAACAAAAGgtaaggagaacaattgtattgtttaaaattttaatgcattcttgcacagtcagcagttcttgattcctccatgatgaaagcataaatatgattggttgtggatctaacttgtttttcccaactgtctaaacagTATAAAGCATTGGAATCCATGGCAAATCAAGTGAAGGCTGAGCA
AACGAACTCCAGTGCTATGGCTTCATATACGAATAAGACAGGGGAAAAGACTGCTGCTAAGTCTAGAGGTTCAGGGTCACCTTTCAAATGTATTGGTTTAGGTTTAGCCCAACAGATGAATTCAGAGAGGGATGAAGAGCTGCATGCTTCCAAGCGACGTATAGAAGAACTTGAAGGTCTTCTTGCAGCTCGACAAAAGG
AGATATTCATGCTCAATTCTAGGCTGGCTGCAGCAGAGAGTATGACACATGATGTCATAAGGGATTTGCTTGGAGTTAAACTGGATATGACCAACTATGCTTCTGTACTAGATAATCAACAAGTACAAAAGATAGCAGAAAAAGCTCGGCGTCAGAATGAAGAGTCACAGGAAAAGGAACATGAAGTGCAGAAGCTAAGA
CATCAATTGAATGATTTAATTGAAGAAAGAGAGAGCTGGCTTGACGAAATTAATCGTAGACAAGCGGAAATGGTGGCTGCTCGAATTGCAGCTGAAAAGCTGCGACAGAGGGATCAGTTCCTGACTACAGAGAGTGATATGTTAA
Intron 2 GTGAGTTATC ... TTCATACTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.83 | 57 | 0 | 15 |
| A2 | 20.83 | 38 | 0 | 10 |
| A3 | 8.33 | 55 | 0 | 5 |
| A4 | 20 | 16 | 0 | 4 |
| A5 | 12.5 | 14 | 0 | 2 |
| A6 | 38.1 | 13 | 0 | 8 |
| A7 | 15.25 | 100 | 0 | 18 |
| A8 | 15.2 | 106 | 1 | 19 |
| A9 | 19.86 | 117 | 0 | 29 |
| A10 | 17.95 | 64 | 3 | 14 |
>TRINITY_DN48633_c0_g1_i2 from sample A10 / Example spliced isoformATTATTTGTCAACTTAGAGAGAGTGAGACATCATTGAAATGTGCTTGGGACAAATTACAAAAAGCAGACCTTGAGCTGAAAGAGAAAGATCAAAAGGTCCACGAAATGATGGTATCTTTGCAAGCAATTGAAGTTACCAAGGCCAGGGTAGAATCAGAAAAGCAGCAACTTATGCTTGTAGCAGATCAGGCATTATCAAC
TTGTTCAGAAAAGGAACAAGAATTGTATATTGCACAGCAAGAACTAACAAGCATTCATGTGAAATTGGAAGAGGTTGAGAGCAAGGGTCGTTCTCTTAATGCTTTAACGGATGAAACTTTGAAACAGCTCAAAGATCTTGAAGAGGAACATTCAAGAATCTTGGCGGATTTGGATGTTCAAAAAAGTAATTGGGATGATG
AGAAGCAGAGGCATCATTCTGAAAAGAAGGAACTTGAAGAACAAATGACGGCGAGACAGATGATGGTTACTGAAGACCTAACTGCCACACAATCCAAACTACAGACTGCTGAGAAGAAATTGGCTGAATCAATGTCAACTGTTGAAGTTCTCATGTCAGAAAAAAGCAACTGGGAAATTGAAAAGGAAACTCTGCTTAAA
GATTCAGCTGATGCTTGCTGTAAAATTTCTGATAAGGAGAAGGAGCTCTCATCTTTGCATGGTACATTAGCGGAAGTTCAGCTGAAGCTACAATCAACAGAGGATAAAGTGGATGCTCTGTCTGTGCTACTTAATGATTTTGAATGCTCTGAAGAACACTGGAGAAGTGAAAGGGAAGGTCTCTCCTCTAAGATTGATCT
TCTGCATGCTGCCCTTGTTGAAAAGGAAAAAGAGGTGGAAGTTCTTCAAAATCAACAAGTTAGACAAGTTTCAGAAGCTGTTCCACGGTCTACTTTGAAGCAAGATATGGAAAATGAAGCTATCAAGTCAGAACTGGAAAGAATGAGATTTGAATCTCAAAATCTCAAAGAAAATCTTTTTGAGAAAGATCAAACTATTT
TATCGGTAAGAAAAGAAATGGAAGCTGCCCTAGCAAGCTTGAAGGAAGCTGAGCTGGAGATGAAGAGAACAATAGATGAAAAAGAAGAATTGAGGAAAGCTGAGGAACAGGGAAGACATAAGATTGAATCCCTTATTAGTGACATCAAGTATTTGCAAGATCAGGTAAATCATAGAGAAGAAGAACTTGAGCTACTGCAG
CTGGAGATGCCGAAATTGCTTGGAGCGGTGGAGAAGAGGATGAAGGATGCTGAAGAAGTCTGGCGAAAAGAGAAAGAGATATTATCTCTTGAGCTAAGTGATGCCAAGCTGATTGCTGCTGAAAAAAGCAGTGAGGCTGTCATTGTGTTTAGGAAGTTTGAGGAGAGCCAAGAGACTATTAAGGAAGCAGATCTCATGCT
CAATACATTGTTGAAAGCAAATGAAAATGCAAGATATGACACAGAACAGTGGAAAAATGCAGGGCAAGATTTGGAAACTGAAAGAGGTTCTTTGATAGATGAGATTCAAAGAACCAAAAATGCTTTTGAAGAGAAGGAAGAGCAATTTGTGTCAATGCAAGAGCAGATGCAGATGAATTTACAAGAAGCAAGAGACCTGA
TTTCCAGTGTAAAAGAAGTTGCTGTAAACTCAATGAGAGGACTTGAGGAAGAATTTGAGGCCATTAATACAGAAATCGGTAACTTAAAGTTGGATATTTTACACGCCCTAAATGCACCAAATTCATGGCTTGAAGAGATCTTGTCTATTGTTGCTGAAAAAGAAAGTGCCACGTTTGTTTTGCATGCTTGCCAAGTAGAG
GCACTCTTAGGAAAGCTGCGGGCACTGCATGCAGAGATTGATTCTCTTAATGTAAAACTACATGAATCCAACAGAAGTATATCTCAGCTGGAGGAGAATAACATGATCTTAAGGGGAGAAGTTGATAGGTCTTTCAGTTTGGGCACCAAATTAGAAGTGGAAATTAAGACAAGTTTAGGCAAAATTAATGAGAAAGAAAG
ACAACTGGAAAGGCTTCTGGCTCAATTAGACCAGTTGGATAAAAACATGTCTGAATTAGAAGGACAGGAGGATGTGATGATGAAATGGTTGGCTGCTAAGGACTTTGATTTGGCTACCCTGATCTCACAGGTAGAAGAGAAGCACAATAATGAAATGGAAGTTGCTAGTAAACTTGAAATAATGCAAAGTGAAAAGGGGG
AATTACATCTTCAACTCCAGAAGTCTTGTGAGAAGATTGAGCAGATGCAGAGAGAAAAAGAAGAATTATTTATTCAATTAGAGCAGTCTTGTAACAAAATTACACTTATGGACAATCAACAAGAATCGATATGTAAAGAGATTGATTTGCTTCATGTGCAGCTTCATGAATCTAACACAAGGGTGGGTGAGTTAGAGAAG
TATAACATGGATTTAAAAAATGAGATTAACGAGTATGAAGTGGCTATAGCCGAGTTGCAAGTGGATTTAATTGATGATGACTCAGAAAGAACTTTTGAAGCTGTCAAGGGACGAGAAAGCTTGGGTGGACAGCTGGAAACATTGAAAATGGAACTGTCTGATTTAAAGATGAAGAAGGAAACTCTAAGCAAAGCAATGAT
AGAGAAGGTATCCGAAGTTACAATTCTGCATCAAGAACTAGATCAACATACCAGGGTGCAGAGCTCTCTTCAGGAAACTCTTCAACAGGTGGATGATTTGCAAAGAGAAAATCATGAGCTATCTCTTCAGCTGAAACAGTCTTCTGAAAGGATTATACATTTGGAAGAGGAAAAGACGGCTCTTGGACGGGAGGAATCTG
AACTTCAAGAGCGATCAAGTTCATTACTCCTTGAACTTGATCAGAGTTGTGAAAGATCAGCTTATTTTGAGAAGCTTTCTGCTGACGCTAATGAAAATTTGAAAAAGAAGCATGAAGAGATTGAAGCCCTGCATAGGCAGTTAGAGGAAGCATCTTGTAGTGCAATGTCCTTGGAACAGAAAAGTAAAGAATTACAAGAC
AAAGTAAGCACATTGGAGGCATCTTTTGGTGCTCTACGATCCAATCTTGATAGTAAAAGCAGAGATTTGATTGAGGTTCAACTTGCTCATTCCAAAATTTTAGAGGAGATTGAACACAAGCACCAAGAGAGCGAGGACTTAATGACTAGATTGAATGCCTCTGAGATGGAAAACATGAAGTTGAGAGAGAATATTGCTAA
AGAGCTTGAAACTAATGAAAGATTATTTTCTGAGCTTCAGCAAAGCAATGATGTTCTTGAAGAAATCCGGAGGGAAAATGCTAAACACGCTGTAGATATGCAAGAGAGAGAAGCAGAGATGATTAGGCTCTTTCAGCAGAAGGAAGACATTTCGAATCACTTTTATGAAGTGGAGAGAGAGAAGGAAACAATGAAAGAAA
CTATGAGCAGTCAAAATGACAAACTTCAAGAATTAGCTGAGCAGATAGCTCTTAAAGATGATTATTTGAAGCAGCTTCAGGCTGTTTCTCTGCAATTGACAAAAGATAGCTGTTGTTCCACTGATATAGCTGAAAAGCTCGAGGCCAAACTTTCTAGCTTGCAGGACAGAGTTTTCTCTGTCATTCCTGTGGAGAGTGCA
GATGAAATGCTGGTCATAGAAAAATTCCTTAAATACATATCTGAACTTGAGGAGAATGCACATATGTTTTTAGCTAAAACTGAATTGCTTGAGTTGAACTTCAAAGATATGTTTTCACAGAATGCTGCATTAATATCAGAACTGCAGTGGAAAGAGGAAATTTTGAAAGGTTTGCAATTTGATTTGAGTTTATTGCAAGA
GTCTGCATCCAAAGCAAAGGACCAAAAAGATGAAGTTCAGGAGACATCTGCAGCATTGAAATTGGTTCAAGAAGATCTATCGGCAAAAAATAATGAGCTCGACACAGTTATGTCTCATAATATAAGGCTAGAGATAGAGCTAATGGAGAAAGTAAGCGAAGTGACCAGTCTAAACGTAGAGCTTACAAAACTAACGGAGA
CTCTGGCCTCTGTCTCAAATGAAAACTCTCAGCTTGCAACTGATATTGAAGACCTATTAGCAAAGAGAAATTCTGCAGAAGAGGAAATGGAAGAGAAACAGAAAGTGATTGAAGGATTAGAGGAAGAGCTCCTTGAAATGAGTTCTCTGGTAGATCACCAGATGATCAATTCAATTGAAAGCATGAAATGTGAATTGAAC
AATGTTATTCGAGAGAGGGACCGTCTTAATGCAGAAGTACTTGCCCTGAATGAACAGTTGGAAATGACCCAGGCTTTTGCAGATGAACGGGAAGCTATTGCTGTGGAAGCACGTCAGGTTGCAGAGGCAAGGAAAACTTATGCAGAAGAGAAAGAAGAAGAGACTAAGCTTTTGGAACGTTCAGTTGAAGAACTAGAGCG
TACAGTAAATGCATTAGAGAGCCAGGTGGACATTGTGAAACGGGAGGCTGAAAGGCAACGTCTGATGAGGGAGGATTTGGAATTGGAGCTGCAAGCCCTAAGACATCAGATGTCAGCAATGCAGAGTGCACAAACCTCTATGAACATCCAAAGCTCAAGTGAGTCCATGGAGAGCGCCAATGAAAACCCAAGGGTTATGG
CAGGTAGAAAGCTTGATTTGCGAGAGGCACGCAAACAGATTAAAGTTCTAGAGAAAGAACTTGAAGAAAAAGATGTGGAGATTAAGAAGTGCAAAGCCCATATTACGGAATTGGTTATGAATGCAGAAACACAGGCAAGTGAGTACCAACAAAAGTATAAAGCATTGGAATCCATGGCAAATCAAGTGAAGGCTGAGCAA
ATGAACTCCAGTGCTATGGCTTCATATACGAATAAGACAGGGGAAAAGACTGCTGCTAAGTCTAGAGGTTCAGGGTCACCTTTCAAATGTATTGGTTTAGGTTTAGCCCAACAGATGAATTCAGAGAGGGATGAAGAGCTGCATGCTTCCAAGCGACGTATAGAAGAACTTGAAGGTCTTCTTGCAGCTCGACAAAAGGA
GATATTCATGCTCAATTCTAGGCTGGCTGCAGCAGAGAGTATGACACATGATGTCATAAGGGATTTGCTTGGAGTTAAACTGGATATGACCAACTATGCTTCTGTACTAGATAATCAACAAGTACAAAAGATAGCAGAAAAAGCTCGGCGTCAGAATGAAGAGTCACAGGAAAAGGAACATGAAGTGCAGAAGCTAAGAC
ATCAATTGAATGATTTAATTGAAGAAAGAGAGAGCTGGCTTGACGAAATTAATCGTAGACAAGCGGAAATGGTGGCTGCTCGAATTGCAGCTGAAAAGCTGCGACAGAGGGATCAGTTCCTGACTACAGAGAGTGATATGTTAAAGACAGACAATACTAGTCAGAAGAGGAAGATTGTGGAGCTTGAGGAAGAGATTAAG
AAGCTTTCAGGGCAACAAAACCTACAACAACGAATTCATCATCATGCAAAAATTAAGGAAGAAAATAATACACTCAGAGCTCAACATGAAGAAATCAGTGGAAGACTAAGGCGAACAGAGGCTCTTCTAGCTCGTGTAAATGATGAACTTGCTCGATACCGGACGGCTGATGGAAGGACACCTTATATTAGTATTGATGA
AGAGCAAAGGCTGCGGAACAAACTTCAGGAAGCCGAGGAGGAAAGGGTGCAGTTGGCACAAAAGTTAGTGAGCTTGTGTAACAGCATCTTGCAGGTAGCTGGAGTTGTTCGACCACCAAGGGACATTGATCCTTCCTTAGCAATTGAATCATTGCAGCAACTAAAAGAGAGACTTGATTGTGCAGAGAGAGAGTTGCAAG
ACTTGAAGCTCAAGACAAGAATCGCCAGTGAAAAGATGCGTCTGAGCGAGCTTCGCCAACAATCAAATTCTCCGTTAAGTGTGAAGGCAAATGAGAACAATAACAGTTTTACAACTGTGCAGAACAACTGCCCAAGTCCTGCTAATTCTAATCCCATATAGAAAACGACTAAATGGTGTGGAGGCAGATGATAATTGAAT
GGACTAGAAGCCATCCATACTGATAGTTAAATTCTAGTTAACTAACATAACAAAGATGGATGTATTGGTTAAACCACTAATTTTCACATTGAGGGACAGTCGTTGTACAGCCCAGCATCAGTAGTCTTAAAACAATAACCGATTATTGTTTTTTGGGTTGAGGCATTCTTGCATTTATGCTCACCCTATGTAGATTATTC
GTACTGTATCTCTCTATTTGTAACCATATTATATTGATTTCGTAATGCATTGCGATTATTGTTTGCAATTGAATAACGCGGCTAATCTTAATTTTCAATTGTTCTCCAACCGAGTTAAGAAATTTGCAAAGATAATACAGTTGCAACCGAGC
>TRINITY_DN48633_c0_g1_i1 from sample A10 / Example unspliced isoform:GACCAACTATGCTgtgagttatcttctgagctcacaggtcttgctgcttttggtgttaacaatttttatttctctaatatttttgtcatctgcttctgtgctttcatactagTCTGTACTAGATAATCAACAAGTACAAAAGATAGCAGAAAAAGCTCGGCGTCAGAATGAAGAGTCACAGGAAAAGGAACATGAAGTGC
AGAAGCTAAGACATCAATTGAATGATTTAATTGAAGAAAGAGAGAGCTGGCTTGACGAAATTAATCGTAGACAAGCGGAAATGGTGGCTGCTCGAATTGCAGCTGAAAAGCTGCGACAGAGGGATCAGTTCCTGACTACAGAGAGTGATATGTTAAAGACAGACAATACTAGTCAGAAGAGGAAGATTGTGGAGCTTGAG
GAAGAGATTAAGAAGCTTTCAGGGCAACAAAACCTACAACAACGAATTCATCATCATGCAAAAATTAAGGAAGAAAATAATACACTCAGAGCTCAACATGAAGAAATCAGTGGAAGACTAAGGCGAACAGAGGCTCTTCTAGCTCGTGTAAATGATGAACTTGCTCGATACCGGACGGCTGATGGAAGGACACCTTATAT
TAGTATTGATGAAGAGCAAAGGCTGCGGAACAAACTTCAGGAAGCCGAGGAGGAAAGGGTGCAGTTGGCACAAAAGTTAGTGAGCTTGTGTAACAGCATCTTGCAGGTAGCTGGAGTTGTTCGACCACCAAGGGACATTGATCCTTCCTTAGCAATTGAATCATTGCAGCAACTAAAAGAGAGACTTGATTGTGCAGAGA
GAGAGTTGCAAGACTTGAAGCTCAAG
Intron 3 GTACCTTGAT ... ATATTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0 | 59.5 | 0 | 0 |
| A2 | 9.59 | 60 | 0 | 6 |
| A3 | 2.5 | 48 | 0 | 1 |
| A4 | 14.22 | 26.5 | 0 | 4 |
| A5 | 40 | 7 | 2 | 3 |
| A6 | 2.65 | 42 | 0 | 1 |
| A7 | 0 | 162 | 1 | 0 |
| A8 | 0.65 | 185.5 | 0 | 1 |
| A9 | 0.72 | 158 | 0 | 1 |
| A10 | 1.11 | 104.5 | 0 | 1 |
>TRINITY_DN45319_c0_g1_i8 from sample A8 / Example spliced isoformGGAGAAGTGAAAGGGAAGGTCTCTCCTCTAAGATTGATCTTCTGCATGCTGCCCTTGTTGAAAAGGAAAAAGAGGTGGAAGTTCTTCAAAATCAACAAGTTAGACAAGTTTCAGAAGCTGTTCCACGGTCTACTTTGAAGGAAGATATGGAAAATGAAGCTATCAAGTCAGAACTGGAAAGAATGAGATTTGAATCTCAA
AATCTCAAAGAAAATCTTTTTGAGAAAGATCAAACTATTTTATCGGTAAGAAAAGAAATGGAAGCTGCCCTAGCAAGCTTGAAGGAAGCTGAGCTGGAGATGAAGAGAACAATAGATGAAAAAGAAGAATTGAGGAAAGCTGAGGAACAGGGAAGACATAAGATTGAATCCCTTATTAGTGACATCAAGTATTTGCAAGA
TCAGGTAAATCATAGAGAAGAAGAACTTGAGCTACTGCAGCTGGAGATGCCGAAATTGCTTGGAGCGGTGGAGAAGAGGATGAAGGATGCTGAAGAAGTCTGGCGAAAAGAGAAAGAGATATTATCTCTTGAGCTAAGTGATGCCAAGCTGATTGCTGCTGAAAAAAGCAGTGAGGCTGTCATTGTGTTTAGGAAGTTTG
AGGAGAGCCAAGAGACTATTAAGGAAGCAGATCTCATGCTCAATACATTGTTGAAAGCAAATGAAAATGCAAGATATGACACAGAACAGTGGAAAAATGCAGGGCAAGATTTGGAAACTGAAAGAGGTTCTTTGATAGATGAGATTCAAAGAACCAAAAATGCTTTTGAAGAGAAGGAAGAGCAATTTGTGTCAATGCAA
GAGCGGATGCAGATGAATTTACAAGAAGCAAGAGACCTGATTTCCAGTGTAAAAGAAGTTGCTGTAAACTCAATGAGAGGACTTGAGGAAGAATTTGAGGCCATTAATACAGAAATCGGTAACTTAAAGTTGGATATTTTACACGCCCTAAATGCACCAAATTCATGGCTTGAAGAGATCTTGTCTATTGTTGCTGAAAA
AGAAAGTGCCACGTTTGTTTTGCATGCTTGCCAAGTAGAGGCACTCTTAGGAAAGCTGCGGGCACTGCATGCAGAGATTGATTCTCTTAATGTAAAACTACATGAATCCAACAGAAGTATATCTCAGCTGGAGGAGAATAACATGATCTTAAGGGGAGAAGTTGATAGGTCTTTCAGTTTGGGCACCAAATTAGAAGTGG
AAATTAAGACAAGTTTAGGCAAAATTAATGAGAAAGAAAGACAACTGGAAAGGCTTCTGGCTCAATTAGACCAGTTGGATAAAAACATGTCTGAATTAGAAGGACAGGAGGATGTGATGATGAAATGGTTGGCTGCTAAGGACTTTGATTTGGCTACCCTGATCTCACAGGTAGAAGAGAAGCACAATAATGAAATGGAA
GTTGCTAGTAAACTTGAAATAATGCAAAGTGAAAAGGGGGAATTACATCTTCAACTCCAGAAGTCTTGTGAGAAGATTGAGCAGATGCAGAGAGAAAAAGAAGAATTATTTATTCAATTAGAGCAGTCTTGTAACAAAATTACACTTATGGACAATCAACAAGAATCGATATGTAAAGAGATTGATTTGCTTCATGTGCA
GCTTCATGAATCTAACACAAGGGTGGGTGAATTAGAGAAGTATAACATGGATTTAAAAAATGAGATTAAAGAGTATGAAGTGGCTATAGCTGAGTTGCAAGTGGATTTAATTGATGATGACTCAGAAAGAACTTTTGAAGCTGTCAAGGGACGAGAAAGCTTGGGTGGACAGCTGGAAACATTGAAAATGGAACTGTCTG
ATTTAAAGATGAAGAAGGAAACTCTAAGCAAAGCAATGATAGAGAAGGTATCCGAAGTTACAATTCTGCATCAAGAACTAGATCAACATACCAGGGTGCAGAGCTCTCTTCAGGAAACTCTTCAACAGGTGGATGATTTGCAAAGAGAAAATCATGAGCTATCTCTTCAGCTGAAACAGTCTTCTGAAAGGATTATACAT
TTGGAAGAGGAAAAGACGGCTCTTGGACGGGAGGAATCTGAACTTCAAGAGCGATCAAGTTCATTACTCCTTGAACTTGATCAGAGTTGTGAAAGATCAGCTTATTTTGAGAAGCTTTCTGCTGACGCTAATGAAAATTTGAAAAAGAAGCATGAAGAGATTGAAGCCCTGCATAGGCAGTTAGAGGAAGCATCTTGTAG
TGCAATGTCCTTGGAACAGAAAAGTAAAGAATTACAAGACAAAGTAAGCACATTGGAGGCATCTTTTGGTGCTCTACGATCCAATCTTGATATTAAAAACAGAGATTTGATTGAGGTTCAACTTGCTCATTCCAAAATTTTAGAGGAGATTGAACACAAGCACCAAGAGAGTGAGGACTTAATGACTAGATTGAATGCCT
CTGAGATGGAAAACATGAAGTTGAGAGAGAATATTGCTAAAGAGCTTGAAACTAATGAAAGATTATTTTCTGAGCTTCAGCAAAGCAATGATGTTCTTGAAGAAATCCGGAGGGAAAATGCTAAACACGCTGTAGATATGCAAGAGAGAGAAGCAGAGATGATTAGGCTCTTTCAGCAGAAGGAAGACATTTCGAATCAC
TTTTATGAAGTGGAGAGAGAGAAGGAAACAATGAAAGAAACTATGAGCAGTCAAAATGACAAACTTCAAGAATTAGCTGAGCAGATAGCTCTTAAAGATGATTATTTGAAGCAGCTTCAGGCTGTTTCTCTGCAATTGACAAAAGATAGCTGTTGTTCCATTGATATAGCTGAAAAGCTCGAGGCCAAACTTTCTAGCTT
GCAGGACAGAGTTTTCTCTGTCATTCCTGTGGAGAGTGCAGATGAAATGCTGGTCATAGAAAAATTCCTTAAATACATATCTGAACTTGAGGAGAATGCACATATGTTTTTAGCTAAAACTGAATTGCTTGAGTTGAACTTCAAAGATATGTTTTCACAGAATGCTGCATTAATATCAGAACTGCAGTGGAAAGAGGAAA
TTTTGAAAGGTTTGCAATTTGATTTGAGTTTATTGCAAGAGTCTGCATCCAAAGCAAAGGACCAAAAAGATGAAGTTCAGGAGACATCTGCAGCATTGAAATTGGTTCAAGAAGATCTATCGGCAAAAAATAATGAGCTCGACACAGTTATGTCTCATAATATAAGGCTAGAGATAGAGCTAATGGAGAAAGTAAGCGAA
GTGACCAGTCTAAACGTAGAGCTTACAAAACTAACGGAGACTCTGGCCTCTGTCTCAAATGAAAACTCTCAGCTTGCAACTGATATTGAAGACCTATTAGCAAAGAGAAATTCTGCAGAAGAGGAAATGGAAGAGAAACAGAAAGTGATTGAAGGATTAGAGGAAGAGCTCCTTGAAATGAGTTCTCTGGTAGATCACCA
GATGATCAATTCAATTGAAAGCATGAAATGTGAATTGAACAATGTTATTCGAGAGAGGGACCGTCTTAATGCAGAAGTACTTGCCCTGAATGAACAGTTGGAAATGACCCAGGCTTTTGCAGATGAACGGGAAGCTATTGCTGTGGAAGCACGTCAGGTTGCAGAGGCAAGGAAAACTTATGCAGAAGAGAAAGAAGAAG
AGACTAAGCTTTTGGAACGTTCAGTTGAAGAACTAGAGCGTACAGTAAATGCATTAGAGAGCCAGGTGGACATTGTGAAACGGGAGGCTGAAAGGCAACGTCTGATGAGGGAGGATTTGGAATTGGAGCTGCAAGCCCTAAGACATCAGATGTCAGCAATGCAGAGTGCACAAACCTCTATGAACATCCAAAGCTCAAGT
GAGTCCATGGAGAGCGCCAATGAAAACCCAAGGGTTATGGCAGGTAGAAAGCTTGATTTGCGAGAGGCACGCAAACAGATTAAAGTTCTAGAGAAAGAAATTGAAGAACAAGATGTGGAGATTAAGAAGTGCAAAGCCCATATTACGGAATTGGTTATGAATGCAGAAACACAGGCAAGTGAGTACCAACAAAAGTATAA
AGCATTGGAATCCATGGCAAATCAAGTGAAGGCTGAGCAAACGAACTCCAGTGCTATGGCTTCATATACGAATAAGACAGGGGAAAAGACTGCTGCTAAGTCTAGAGGTTCAGGGTCACCTTTCAAATGTATTGGTTTAGGTTTAGCCCAACAGATGAATTCAGAGAGGGATGAAGAGCTGCATGCTTCCAAGCGACGTA
TAGAAGAACTTGAAGGTCTTCTTGCAGCTCGACAAAAGGAGATATTCATGCTCAATTCTAGGCTGGCTGCAGCAGAGAGTATGACACATGATGTCATAAGGGATTTGCTTGGAGTTAAACTGGATATGACCAACTATGCTTCTGTACTAGATAATCAACAAGTACAAAAGATAGCAGAAAAAGCTCGGCGTCAGAATGAA
GAGTCACAGGAAAAGGAACATGAAGTGCAGAAGCTAAGACATCAATTGAATGATTTAATTGAAGAAAGAGAGAGCTGGCTTGACGAAATTAATCGTAGACAAGCGGAAATGGTGGCTGCTCGAATTGCAGCTGAAAAGCTGCGACAGAGGGATCAGTTCCTGACTACAGAGAGTGATATGTTAAAGACAGACAATACTAG
TCAGAAGAGGAAGATTGTGGAGCTTGAGGAAGAGATTAAGAAGCTTTCAGGGCAACAAAACCTACAACAACGAATTCATCATCATGCAAAAATTAAGGAAGAAAATAATACACTCAGAGCTCAACATGAAGAAATCAGTGGAAGACTAAGGCGAACAGAGGCTCTTCTAGCTCGTGTAAATGATGAACTTGCTCGATACC
GGACGGCTGATGGAAGGACACCTTATATTAGTATTGATGAAGAGCAAAGGCTGCGGAACAAACTTCAGGAAGCCGAGGAGGAAAGGGTGCAGTTGGCACAAAAGTTAGTGAGCTTGTGTAACAGCATCTTGCAGGTAGCTGGAGTTGTTCGACCACCAAGGGACATTGATCCTTCCTTAGCAATTGAATCATTGCAGCAA
CTAAAAGAGAGACTTGATTGTGCAGAGAGAGAGTTGCAAGACTTGAAGCTCAAGACAAGAATCGCCAGTGAAAAGATGCGTCTGAGCGAGCTTCGCCAACAATCAAATTCTCCGTTAAGTGTGAAGGCAAATGAGAACAATAACAGTTTTACAACTGTGCAGAACAACTGCCCAAGTCCTGCTAATTCTAATCCCATATA
GAAAACGACTAAATGGTGTGGAGGCAGATGATAATTGAATGGACTAGAAGCCATCCATACTGATAGTTAAATTCTAGTTAACTAACATAACAAAGATGGATGTATTGGTTAAACCACTAATTTTCACATTGAGGGACAGTCGTTGTACAGCCCAGCATCAGTAGTCTTAAAACAATAACCGATTATTGTTTTTTGGGTTG
AGGCATTCTTGCATTTATGCTCACCCTATGTAGATTATTCGTACTGTATCTCTCTATTTGTAACCATATTATATTGATTTCGTAATGCATTGCGATTATTGTTTGCAATTGAATAACGCGGCTAATCTTAATTTTCAATTGTTCTCCAACCGAGTTAAGAAATTTGCAAGATATACAGTTGCAACCGAGTTAAGAAATTT
GCAAAGATAATACAGTTGCAACCGAGTTAAGAAATTTGCAAAGATATACCGTTGCAAGACCATTTGAAGATTTACAAAAAATGAAGTTTTTTGAATACCCATTCACATTTTGACATATATATGACAAATTAATTTTCATCCA
>TRINITY_DN45319_c0_g1_i7 from sample A8 / Example unspliced isoform:AAGGCTGCGGAACAAACTTCAGgtaccttgatgccatcctatctatcctttgaccaaagaaagttgtagacccttttaatctttcattttcgtgatgcgtctgcttttttgtcaaacaatggatttcccctaaagtaggaaaaagatgatgcttttcagaataaacactggcttgagtatttattaggcaatctgattcc
atatttccagGAAGCCGAGGAGGAAAGGGTGCAGTTGGCACAAAAGTTAGTGAGCTTGTGCAACAGCATCTTGCAGGTTAGTAGAATGTACCGAATATTCATGGATTGTGTGCATGTACAGAATACTCTCTAAAACAATGCAAACATGGAACCAAACAGGTAGCTGGAGTTGTTCGACCACCAAGGGACATTGATCCTTC
CTTAGCAATTGAATCATTGCAGCAACTAAAAGAGAGACTTGATTGTGCAGAGAGAGAGTTGCAAGACTTGAAGCTCAAGGTATTGATTCGAGTGCCATTATTACTTATTTTAGCATAGAGCTATATATTTTGAAACTAAAAATGAAGATTCACCTGGTTGAAAGACCCAGCAAAATTCACTCACAACTTCTTGATTTTTT
GCTTCAGAGCATATAGATTTCTTGCACCATTCACTCTCACTTGCAACATGACACTCTGGTGTTTGCACACACCATTTATGACCAGCATTTCTTTTTGGTTCCGCATGATCATGCTGCCGCTTGACGTCTGTATTTCATGCTTGCATTCATTGTTTGGTGTTCTCTTACTACAGACAAGAATCGCCAGTGAAAAGATGCGT
CTGAGCGAGCTTCGCCAACAATCAAATTCTCCGTTAAGTGTGAAGGCAAATGAGAACAATAACAGTTTTACAACTGTGCAGAACAACTGCCCAAGTCCTGCTAATTCTAATCCCATATAGAAAACGACTAAATGGTGTGGAGGCAGATGATAATTGAATGGACTAGAAGCCATCCATACTGATAGTTAAATTCTAGTTAA
CTAACATAACAAAGATGGATGTATTGGTTAAACCACTAATTTTCACATTGAGGGACAGTCGTTGTACAGCCCAGCATCAGTAGTCTTAAAACAATAACCGATTATTGTTTTTTGGGTTGAGGCATTCTTGCATTTATGCTCACCCTATGTAGATTATTCGTACTGTATCTCTCTATTTGTAACCATATTATATTGATTTC
GTAATGCATTGCGATTATTGTTTGCAATTGAATAACGCGGCTAATCTTAATTTTCAATTGTTCTCCAACCGAGTTAAGAAATTTGCAAGATATACAGTTGCAACCGAGTTAAGAAATTTGCAAAGATAATACAGTTGCAACCGAGTTAAGAAATTTGCAAAGATATACCGTTGCAAGACCATTTGAAGATTTACAAAAAA
TGAAGTTTTTTGAATACCCATTCACATTTTGACATATATATGACAAATTAATTTTCATCCA
Intron 4 GTTAGTAGAA ... AACCAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.31 | 125 | 21.2 | 38 |
| A2 | 23.2 | 98 | 9.6 | 29.6 |
| A3 | 24.22 | 97 | 13.4 | 31 |
| A4 | 23.73 | 45 | 7.2 | 14 |
| A5 | 25 | 18 | 5.2 | 6 |
| A6 | 24.21 | 72 | 9.4 | 23 |
| A7 | 17.84 | 350 | 36 | 76 |
| A8 | 23.25 | 441 | 63.2 | 133.6 |
| A9 | 18.99 | 324.2 | 46.2 | 76 |
| A10 | 18.5 | 207 | 30.6 | 47 |
>TRINITY_DN103817_c0_g1_i1 from sample A5 / Example spliced isoformAATGGAAGCTGCCCTAGCAAGCTTGAAGGAAGCTGAGCTGGAGATGAAGAGAACAATAGATGAAAAAGAAGAATTGAGGAAAGCTGAGGAACAGGGAAGACATAAGATTGAATCCCTTATTAGTGACATCAAGTATTTGCAAGATCAGGTAAATCATAGAGAAGAAGAACTTGAGCTACTGCAGCTGGAGATGCCGAAAT
TGCTTGGAGCGGTGGAGAAGAGGATGAAGGATGCTGAAGAAGTCTGGCGAAAAGAGAAAGAGATATTATCTCTTGAGCTAAGTGATGCCAAGCTGATTGCTGCTGAAAAAAGCAGTGAGGCTGTCATTGTGTTTAGGAAGTTTGAGGAGAGCCAAGAGACTATTAAGGAAGCAGATCTCATGCTCAATACATTGTTGAAA
GCAAATGAAAATGCAAGATATGACACAGAACAGTGGAAAAATGCAGGGCAAGATTTGGAAACTGAAAGAGGTTCTTTGATAGATGAGATTCAAAGAACCAAAAATGCTTTTGAAGAGAAGGAAGAGCAATTTGTGTCAATGCAAGAGCAGATGCAGATGAATTTACAAGAAGCAAGAGACCTGATTTCCAGTGTAAAAGA
AGTTGCTGTAAACTCAATGAGAGGACTTGAGGAAGAATTTGAGGCCATTAATACAGAAATCGGTAACTTAAAGTTGGATATTTTACACGCCCTAAATGCACCAAATTCATGGCTTGAAGAGATCTTGTCTATTGTTGCTGAAAAAGAAAGTGCCACGTTTGTTTTGCATGCTTGCCAAGTAGAGGCACTCTTAGGAAAGC
TGCGGGCACTGCATGCAGAGATTGATTCTCTTAATGTAAAACTACATGAATCCAACAGAAGTATATCTCAGCTGGAGGAGAATAACATGATCTTAAGGGGAGAAGTTGATAGGTCTTTCAGTTTGGGCACCAAATTAGAAGTGGAAATTAAGACAAGTTTAGGCAAAATTAATGAGAAAGAAAGACAACTGGAAAGGCTT
CTGGCTCAATTAGACCAGTTGGATAAAAAAATGTCTGAATTAGAAGGACAGGAGGATGTGATGATGAAATGGTTGGCTGCTAAGGACTTTGATTTGGCTACCCTGATCTCACAGGTAGAAGAGAAGCACAATAATGAAATGGAAGTTGCTAGTAAACTTGAAATAATGCAAAGTGAAAAGGGGGAATTACATCTTCAACT
CCAGAAGTCTTGTGAGAAGATTGAGCAGATGCAGAGAGAAAAAGAAGAATTATTTATTCAATTAGAGCAGTCTTGTAACAAAATTACACTTATGGACAATCAACAAGAATCGATATGTAAAGAGATTGATTTGCTTCATGTGCAGCTTCATGAATCTAACACAAGGGTGGGTGAGTTAGAGAAGTATAACATGGATTTAA
AAAATGAGATTAACGAGTATGAAGTGGCTATAGCCGAGTTGCAAGTGGATTTAATTGATGATGACTCAGAAAGAACTTTTGAAGCTGTCAAGGGACGAGAAAGCTTGGGTGGACAGCTGGAAACATTGAAAATGGAACTGTCTGATTTAAAGATGAAGAAGGAAACTCTAAGCAAAGCAATGATAGAGAAGGTATCCGAA
GTTACAATTCTGCATCAAGAACTAGATCAACATACCAGGGTGCAGAGCTCTCTTCAGGAAACTCTTCAACAGGTGGATGATTTGCAAAGAGAGAATCATGAGCTATCTCTTCAGCTGAAACAGTCTTCTGAAAGGATTATACATTTGGAAGAGGAAAAGACAGCTCTTGGACGGGAGGAATCTGAACTTCAAGAGCGATC
AAGTTCATTACTCCTTGAACTTGATCAGAGTTGTGAAAGATCAGCTTATTTTGAGAAGCTTTCTGCTGACGCTAATGAAAATTTGAAAAAGAAGCATGAAGAGATTGAAGCCCTGCATAGGCAGTTAGAGGAAGCATCTTGTAGTGCAATGTCCTTGGAACAGAAAAGTAAAGAATTACAAGACAAAGTAAGCACATTGG
AGGCATCTTTTGGTGCTCTACGATCCAATCTTGATAGTAAAAGCAGAGATTTGATTGAGGTTCAACTTGCTCATTCCAAAATTTTAGAGGAGATTGAACACAAGCACCAAGAGAGTGAGGACTTAATGACTAGATTGAATGCCTCTGAGATGGAAAACATGAAGTTGAGAGAGAATATTGCTAAAGAGCTTGAAACTAAT
GAAAGATTATTTTCTGAGCTTCAGCAAAGCAATGATGTTCTTGAAGAAATCCGGAGGGAAAATGCTAAACACGCTGTAGATATGCAAGAGAGAGAAGCAGAGATGATTAGGCTCTTTCAGCAGAAGGAAGACATTTCGAATCACTTTTATGAAGTGGAGAGAGAGAAGGAAACAATGAAAGAAACTATGAGCAGTCAAAA
TGACAAACTTCAAGAATTAGCTGAGCAGATAGCTCTTAAAGATGATTATTTGAAGCAGCTTCAGGCTGTTTCTCTGCAATTGACAAAAGATAGCTGTTGTTCCATTGATATAGCTGAAAAGCTCGAGGCCAAACTTTCTAGCTTGCAGGACAGAGTTTTCTCTGTCATTCCTGTGGAGAGTGCAGATGAAATGCTGGTCA
TAGAAAAATTCCTTAAATACATATCTGAACTTGAGGAGAATGCACATATGTTTTTAGCTAAAACTGAATTGCTTGAGTTGAACTTCAAAGATATGTTTTCACAGAATGCTGCATTAATATCAGAACTGCAGTGGAAAGAGGAAATTTTGAAAGGTTTGCAATTTGATTTGAGTTTATTGCAAGAGTCTGCATCCAAAGCA
AAGGACCAAAAAGATGAAGTTCAGGAGACATCTGCAGCATTGAAATTGGTTCAAGAAGATCTATCGGCAAAAAATAATGAGCTCGACACAGTTATGTCTCATAATATAAGGCTAGAGATAGAGCTAATGGAGAAAGTAAGCGAAGTGACCAGTCTAAACGTAGAGCTTACAAAACTAACAGAGACTCTAGCCTCTGTCTC
AAATGAAAACTCTCAGCTTGCAACTGATATTGAAGACCTATTAGCAAAGAGAAATTCTGCAGAAGAGGAAATGGAAGAGAAACAGAAAGTGATTGAAGGATTAGAGGAAGAGCTCCTTGAAATGAGTTCTCTGGTAGATCACCAGATGATCAATTCAATTGAAAGCATGAAATGTGAATTGAACAATGTTATTCGAGAGA
GGGACCGTCTTAATGCAGAAGTACTTGCCCTGAATGAACAGTTGGAAATGACCCAGGCTTTTGCAGATGAACGGGAAGCTATTGCTGTGGAAGCACGTCAGGTTGCAGAGGCAAGGAAAACTTATGCAGAAGAGAAAGAAGAAGAGACTAAGCTTTTGGAACGTTCAGTTGAAGAACTAGAGCGTACAGTAAATGCATTA
GAGAGCCAGGTGGACATTGTGAAACGGGAGGCTGAAAGGCAACGTCTGATGAGGGAGGATTTGGAATTGGAGCTGCAAGCCCTAAGACATCAGATGTCAGCAATGCAGAGTGCACAAACCTCTATGAACATCCAAAGCTCAAGTGAGTCCATGGAGAGCGCCAATGAAAACCCAAGGGTTATGGCAGGTAGAAAGCTTGA
TTTGCGAGAGGCACGCAAACAGATTAAAGTTCTAGAGAAAGAACTTGAAGAAAAAGATGTGGAGATTAAGAAGTGCAAAGCCCATATTACGGAATTGGTTATGAATGCAGAAACACAGGCAAGTGAGTACCAACAAAAGTATAAAGCATTGGAATCCATGGCAAATCAAGTGAAGGCTGAGCAAACGAACTCCAGTGCTA
TGGCTTCATATACGAATAAGACAGGGGAAAAGACTGCTGCTAAGTCTAGAGGTTCAGGGTCACCTTTCAAATGTATTGGTTTAGGGTTAGCCCAACAGATGAATTCAGAGAGGGATGAAGAGCTGCATGCTTCCAAGCGACGTATAGAAGAACTTGAAGGTCTTCTTGCAGCTCGACAAAAGGAGATATTCATGCTCAAT
TCTAGGCTGGCTGCAGCAGAGAGTATGACACATGATGTCATAAGGGATTTGCTTGGAGTTAAACTGGATATGACCAACTATGCTTCTGTACTAGATAATCAACAAGTACAAAAGATAGCAGAAAAAGCTCGGCGTCAGAATGAAGAGTCACAGGAAAAGGAACATGAAGTGCAGAAGCTAAGACATCAATTGAATGATTT
AATTGAAGAAAGAGAGAGCTGGCTTGACGAAATTAATCGTAGACAAGCGGAAATGGTGGCTGCTCGAATTGCAGCTGAAAAGCTGCGACAGAGGGATCAGTTCCTGACTACAGAGAGTGATATGTTAAAGACAGACAATACTAGTCAGAAGAGGAAGATTGTGGAGCTTGAGGAAGAGATTAAGAAGCTTTCAGGGCAAC
AAAACCTACAACAACGAATTCATCATCATGCAAAAATTAAGGAAGAAAATAATACACTCAGAGCTCAACATGAAGAAATCAGTGGAAGACTAAGGCGAACAGAGGCTCTTCTAGCTCGTGTAAATGATGAACTTGCTCGATACCGGACGGCTGATGGAAGGACACCTTATATTAGTATTGATGAAGAGCAAAGGCTGCGG
AACAAACTTCAGGAAGCCGAGGAGGAAAGGGTGCAGTTGGCACAAAAGTTAGTGAGCTTGTGCAACAGCATCTTGCAGGTAGCTGGAGTTGTTCGACCACCAAGGGACATTGATCCTTCCTTAGCAATTGAATCATTGCAGCAACTAAAAGAGAGACTTGATTGTGCAGAGAGAGAGTTGCAAGACTTGAAGCTCAAGAC
AAGAATCGCCAGTGAAAAGATGCGTCTGAGCGAGCTTCGCCAACAATCAAATTCTCCGTTAAGTGTGAAGGCAAATGAGAACAATAACAGTTTTACAACTGTGCAGAACAACTGCCCAAGTCCTGCTAATTCTAATCCCATATAGAAAACGACTAAATGGTGTGGAGGCAGATGATAATTGAATGGACTAGAAGCCATCC
ATACTGATAGTTAAATTCTAGTTAACTAACATAACAAAGATGGATGTATTGGTTAAACCACTAATTTTCACATTGAGGGACAGTCGTTGTACAGCCCAGCATCAGTAGTCTTAAAACAATAACCGATTATTGTTTTTTGGGTTGAGGCATTCTTGCATTTATGCTCACCCTATGTAGATTATTCGTACTGTATCTCTCTA
TTTGTAACCATATTATATTGATTTCGTAATGCA
>TRINITY_DN103817_c0_g1_i4 from sample A5 / Example unspliced isoform:AACAAACTTCAGGTACCTTGATGCCATCCTATCTATCCTTTGACCAAAGAAAGTTGTAGACCCTTTTAATCTTTCATTTTCATGATGCGTCTGCTTTTTTGTCAAACAATGGATTTCCCCTTAAGTAGGAAAAAGATGATGCTTTTCAGAATAAACACTGGCTTGAGTATTTATTAGGCAATCTGATTCCATATTTCCAG
GAAGCCGAGGAGGAAAGGGTGCAGTTGGCACAAAAGTTAGTGAGCTTGTGCAACAGCATCTTGCAGgttagtagaatgtaccgaatattcatggattgtgtgcatgtacagaatactctctaaaacaatgcaaacatggaaccaaacagGTAGCTGGAGTTGTTCGACCACCAAGGGACATTGATCCTTCCTTAGCAATT
GAATCATTGCAGCAACTAAAAGAGAGACTTGATTGTGCAGAGAGAGAGTTGCAAGACTTGAAGCTCAAGACAAGAATCGCCAGTGAAAAGATGCGTCTGAGCGAGCTTCGCCAACAATCAAATTCTCCGTTAAGTGTGAAGGCAAATGAGAACAATAACAGTTTTACAACTGTGCAGAACAACTGCCCAAGTCCTGCTAA
TTCTAATCCCATATAGAAAACGACTAAATGGTGTGGAGGCAGATGATAATTGAATGGACTAGAAGCCATCCATACTGATAGTTAAATTCTAGTTAACTAACATAACAAAGATGGATGTATTGGTTAAACCACTAATTTTCACATTGAGGGACAGTCGTTGTACAGCCCAGCATCAGTAGTCTTAAAACAATAACCGATTA
TTGTTTTTTGGGTTGAGGCATTCTTGCATTTATGCTCACCCTATGTAGATTATTCGTACTGTATCTCTCTATTTGTAACCATATTATATTGATTTCGTAATGCA
Intron 5 GTAAGGAGAA ... GTCTAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.2 | 65 | 6 | 21 |
| A2 | 17.58 | 75 | 16 | 16 |
| A3 | 20 | 86 | 14 | 29 |
| A4 | 35.38 | 21 | 9 | 14 |
| A5 | 25 | 9 | 2 | 4 |
| A6 | 41.67 | 7 | 3 | 7 |
| A7 | 19.25 | 65 | 13 | 18 |
| A8 | 17.59 | 82 | 14 | 21 |
| A9 | 16.26 | 103 | 25 | 15 |
| A10 | 15.85 | 69 | 16 | 10 |
>TRINITY_DN39829_c0_g1_i4 from sample A6 / Example spliced isoformGTGTGGAAGCACGTCAGGTTGCAGAGGCAAGGAAAACTTATGCAGAAGAGAAAGAAGAAGAGACTAAGCTTTTGGAACGTTCAGTTGAAGAACTAGAGCGTACAGTAAATGCATTAGAGAGCCAGGTGGACATTGTGAAACGGGAGGCTGAAAGGCAACGTCTGATGAGGGAGGATTTGGAATTGGAGCTGCAAGCCCTA
AGACATCAGATGTCAGCAATGCAGAGTGCACAAACCTCTATGAACATCCAAAGCTCAAGTGAGTCCATGGAGAGCGCCAATGAAAACCCAAGGGTTATGGCAGGTAGAAAGCTTGATTTGCGAGAGGCACGCAAACAGATTAAAGTTCTAGAGAAAGAAATTGAAGAACAAGATGTGGAGATTAAGAAGTGCAAAGCCCA
TATTACGGAATTGGTTATGAATGCAGAAACACAGGCAAGTGAGTACCAACAAAAGTATAAAGCATTGGAATCCATGGCAAATCAAGTGAAGGCTGAGCAAATGAACTCCAGTGCTATGGCTTCATATACGAATAAGACAGGGGAAAAGACTGCTGCTAAGTCTAGAGGTTCAGGGTCACCTTTCAAATGTATTGGTTTAG
GTTTAGCCCAACAGATGAATTCAGAGAGGGATGAAGAGCTGCATGCTTCCAAGCGACGTATAGAAGAACTTGAAGGTCTTCTTGCAGCTCGACAAAAGGAGATATTCATGCTCAATTCTAGGCTGGCTGCAGCAGAGAGTATGACACATGATGTCATAAGGGATTTGCTTGGAGTTAAACTGGATATGACCAACTATGCT
TCTGTACTAGATAATCAACAAGTACAAAAGATAGCAGAAAAAGCTCGGCGTCAGAATGAAGAGTCACAGGAAAAGGAACATGAAGTGCAGAAGCTAAGACATCAACTGAATGATTTAATTGAAGAAAGAGAGAGCTGGCTTGACGAAATTAATCGTAGACAAGCGGAAATGGTGGCTGCTCGAATTGCAGCTGAAAAGCT
GCGACAGAGGGATCAGTTCCTGACTACAGAGAGTGATATGTTAAAGACAGACAATACTAGTCAGAAGAGGAAGATTGTGGAGCTTGAGGAAGAGATTAAGAAGCTTTCAGGGCAACAAAACCTACAACAACGAATTCATCATCATGCAAAAATTAAGGAAGAAAATAATACACTCAGAGCTCAACATGAAGAAATCAGTG
GAAGACTAAGGCGAACAGAGGCTCTTCTAGCTCGTGTAAATGATGAACTTGCTCGATACCGGACGGCTGATGGAAGGACACCTTATATTAGTATTGATGAAGAGCAAAGGCTGCGGAACAAACTTCAGGTACCTTGATGCCATCCTATCTATCCTTTGACCAAAGAAAGTTGTAGACCCTTTTAATCTTTCATTTTCATG
ATGCGTCTGCTTTTTTGTCAAACAATGGATTTCCCCTTAAGTAGGAAAAAGATGATGCTTTTCAGAATAAACACTGGCTTGAGTATTTATTAGGCAATCTGATTCCATATTTCCAGGAAGCCGAG
>TRINITY_DN39829_c0_g1_i6 from sample A6 / Example unspliced isoform:GTGTGGAAGCACGTCAGGTTGCAGAGGCAAGGAAAACTTATGCAGAAGAGAAAGAAGAAGAGACTAAGCTTTTGGAACGTTCAGTTGAAGAACTAGAGCGTACAGTAAATGCATTAGAGAGCCAGGTGGACATTGTGAAACGGGAGGCTGAAAGGCAACGTCTGATGAGGGAGGATTTGGAATTGGAGCTGCAAGCCCTA
AGACATCAGATGTCAGCAATGCAGAGTGCACAAACCTCTATGAACATCCAAAGCTCAAGTGAGTCCATGGAGAGCGCCAATGAAAACCCAAGGGTTATGGCAGGTAGAAAGCTTGATTTGCGAGAGGCACGCAAACAGATTAAAGTTCTAGAGAAAGAAATTGAAGAACAAGATGTGGAGATTAAGAAGTGCAAAGCCCA
TATTACGGAATTGGTTATGAATGCAGAAACACAGGCAAGTGAGTACCAACAAAAGgtaaggagaacaattgtattgtttaaaattttaatgcattcttgcacagtcagcagtcttgattcctccatgacgaaagcataaatatgattggttgtggatctaacttgtttttcccaactgtctaaacagTATAAAGCATTGG
AATCCATGGCAAATCAAGTGAAGGCTGAGCAAATGAACTCCAGTGCTATGGCTTCATATACGAATAAGACAGGGGAAAAGACTGCTGCTAAGTCTAGAGGTTCAGGGTCACCTTTCAAATGTATTGGTTTAGGTTTAGCCCAACAGATGAATTCAGAGAGGGATGAAGAGCTGCATGCTTCCAAGCGACGTATAGAAGAA
CTTGAAGGTCTTCTTGCAGCTCGACAAAAGGAGATATTCATGCTCAATTCTAGGCTGGCTGCAGCAGAGAGTATGACACATGATGTCATAAGGGATTTGCTTGGAGTTAAACTGGATATGACCAACTATGCTTCTGTACTAGATAATCAACAAGTACAAAAGATAGCAGAAAAAGCTCGGCGTCAGAATGAAGAGTCACA
GGAAAAGGAACATGAAGTGCAGAAGCTAAGACATCAACTGAATGATTTAATTGAAGAAAGAGAGAGCTGGCTTGACGAAATTAATCGTAGACAAGCGGAAATGGTGGCTGCTCGAATTGCAGCTGAAAAGCTGCGACAGAGGGATCAGTTCCTGACTACAGAGAGTGATATGTTAAAGACAGACAATACTAGTCAGAAGA
GGAAGATTGTGGAGCTTGAGGAAGAGATTAAGAAGCTTTCAGGGCAACAAAACCTACAACAACGAATTCATCATCATGCAAAAATTAAGGAAGAAAATAATACACTCAGAGCTCAACATGAAGAAATCAGTGGAAGACTAAGGCGAACAGAGGCTCTTCTAGCTCGTGTAAATGATGAACTTGCTCGATACCGGACGGCT
GATGGAAGGACACCTTATATTAGTATTGATGAAGAGCAAAGGCTGCGGAACAAACTTCAGGAAGCCGAGGAGGAAAGGGTGCAGTTGGCACAAAAGTTAGTGAGCTTGTGTAACAGCATCTTGCAGGTAGCTGGAGTTGTTCGACCACCAAGGGACATTGATCCTTCCTTAGCAATTGAATCATTGCAGCAACTAAAAGA
GAGACTTGATTGTGCAGAGAGAGAGTTGCAAGACTTGAAGCTCAAGACAAGAATCGCCAGTGAAAAGATGCGTCTGAGCGAGCTTCGCCAACAATCAAATTCTCCGTTAAGTGTGAAGGCAAATGAGAACAATAACAGTTTTACAACTGTGCAGAACAACTGCCCAAGTCCTGCTAATTCTAATCCCATATAGAAAACGA
CTAAATGGTGTGGAGGCAGATGATAATTGAATGGACTAGAAGCCATCCATACTGATAGTTAAATTCTAGTTAACTAACATAACAAAGATGGATGTATTGGTTAAACCACTAATTTTCACATTGAGGGACAGTCGTTGTACAGCCCAGCATCAGTAGTCTTAAAACAATAACCGATTATTGTTTTTTGGGTTGAGGCATTC
TTGCATTTATGCTCACCCTATGTAGATTATTCGTACTGTATCTCTCTATTTGTAACCATATTATATTGATTTCGTAATGCATTGCGATTATTGTTTGCAATTGAATAACGCGGCTAATCTTAATTTTCAATTGTTCTCCAACCGAGTTAAGAAATTTGCAAAGATAATACAGTTGCAACCGAG
Intron 6 GCAAACATAT ... CATGTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.2 | 83 | 17 | 13 |
| A2 | 16.46 | 52 | 3.5 | 17 |
| A3 | 15.75 | 50 | 9 | 10 |
| A4 | 23.16 | 28 | 7 | 10 |
| A5 | 21.08 | 20 | 6 | 5 |
| A6 | 19.78 | 38 | 6 | 13 |
| A7 | 17.16 | 143 | 24.5 | 35 |
| A8 | 13.64 | 161 | 20.5 | 31 |
| A9 | 19.05 | 164 | 32.5 | 45 |
| A10 | 15.11 | 93 | 15.5 | 18 |
>TRINITY_DN48643_c0_g1_i8 from sample A7 / Example spliced isoformCAGTAACAGGTGAGGTAATCATTTCCTGACAGGAAGAACTTCTTGCACTTCGTGAACAGGTTGATTCAACGACTGTGAGAGAATCTGACACAAATGAACAGATTATGCAGTTGAAAGGAGAAACAGAAGAACTGAAAGTTAGATTAACATGTGTTACAAAGGAGAATGGGACATTAGTAAGTTTGTTGGCTGAGAAAGAT
GCCGAGTTAAGGACACTGATGGATGAATGGGAAAAAGCAGCTTCAGAGTTGGCAAATTTTCTCGCAGAGGGAGATCAAGCACTTGAAGATGCTTCTGAGCAGATGGATAACATAATAGATTCATTTCCCCAAAGAAAACTTAATCTTAATCAAGGAGTAGAGCGGGTGGTGGCCATACTTGCTGAAAAGGAAAAGACAAT
TGACGTTCTTCAAAAACGACTGCAGCATGTGCATAATCTGGCACGTGATACAGAAGGAAAGATGAAGTCCTTGAAAGAGGCAACATTGGCAATTACAGAGGCACAGCAAAAAGAGAATGATGAGATGACTAAGGAGGCAATTACGATGAGATCAGAGTTCACTGAGAAACTGTCCATTATTCAAGAGTTGGAGAGTAAGG
TAGACCATTATAAAAACAGCATAAACGAGGCCGACAAACGTGCCGCTGCTGCATTTGTTACAGTGAAAAAGCTTGCCGAGGTAAATGAGGTTCAGATAGAGGTAGAGAAAAGAGCAGTGGTCCAGCTCGAGGAAGCATTAGATGTCAGCAGTCAGAAGGATAATTTGATTCAAGATCTGAATAATGAAAATTTTGAAGCT
AGATTGCAGATTGATTCTCTGAAGCAGCAGATACTGGAATTCAAGGAAGAAAGAGATGAACTCATGCTAGCCCTGGCTTTGGAGCAGAGTCATGTGAAGGCTGCTGAGATGAAAGCAGAAGTCAAAGAGAAGGCCTTGCAATATGTGGAAGATCAAATTGAGAAATCATGGCAGAAGGTTTTTGAGCTTGAGGCTACTCT
TTGTTTATCTTTTGCAGGTATTGAGAGGGATCTATCTGCTGAAAGATTCAATGCAAGTACACTTTTTAACAGTTTCAAAAGGCAAGTTCAAGAACAGTTTGAAGATGTGCATGTTTTGAAGGAGGACCTTCTGTACAAGATCGGTAATCAAACAGAAGAGATAGAAAGAGCCGGGGCAAATCTAAAAGATAACCAGGAGA
AAGAAAATGCATTGGTCATTGCCTTTGTAGATGCAATCCTTGTGGCCAAGAAAATGCAACAGAGAAATGACAGGATTATTTGTCAACTTAGAGAGAGTGAGACATCATTGAAATGTGCTTGGGACAAATTACAAAAAGCAGACCTTGAGCTGAAAGAGAAAGATCAAATGGTCCACGAAATGATGGTATCTTTGCAAGCA
ATTGAAGTTACCAAGGCCAGGGTAGAATCAGAAAAGCAGCAACTTATGCTTGTAGCAGATCAGGCATTATCAACTTGTTCAGAAAAGGAACAAGAATTGTATATTGCACAGCAAGAACTAACAAGCATTCATGTGAAATTGGAAGAGGTTGAGAGCAAGGGTCGTTCTCTTAATGCTTTAACGGATGAAACTTTGAAACA
GCTCAAAGATCTTGAAGAGGAACATTCAAGAATCTTGGCGGATTTGGATGTTCAAAAAAGTAATTGGGATGATGAGAAGCAGAGGCATCATTCTGAAAAGAAGGAACTTGAAGAACAAATGACAACGAGACAGATGATGGTTACTGAAGACCTAACTGCCACACAATCCAAACTACAGACTGCTGAGAAAAAATTGGCTG
AATCAATGTCAACTGTTGAAGTTCTCATGTCAGAAAAAAGCAACTGGGAAATTGAAAAGGAGACTCTGCTTAAAGATTCAGCTGATGCTTGCTGTAAAATTTCTGATAAGGAGAAGGAGCTCTCATCTTTGCATGGTACATTAGCGGAAGTTCAGCTGAAGCTACAATCAACAGAGGATAAAGTGGATGCTCTGTCTGTG
CTACTTAATGATTTTGAATGCTCTGAAGAACACTGGAGAAGTGAAAGGGAAGGTCTCTCCTCTAAGATTGATCTTCTGCATGCTGCCCTTGTTGAAAAGGAAAAAGAGGTGGAAGTTCTTCAAAATCAACAAGTTACACAAGTTTCAGAAGCTGTTCCACGGTCTACTTTGAAGCAAGATATGGAAAATGAAGCTATCAA
GTCAGAACTGGAAAGAATGAGATTTGAATCTCAAAATCTCAAAGAAAATCTTTTTGAGAAAGATCAAACTATTTTATCGGTAAGAAAAGAAATGGAAGCTGCCCTAGCAAGCTTGAAGGAAGCTGAGCTGGAGATGAAGAGAACAATAGATGAAAAAGAAGAATTGAGGAAAGCTGAGGAACAGGGAAGACATAAGATTG
AATCCCTTATTAGTGACATCAAGTATTTGCAAGATCAGGTAAATCATAGAGAAGAAGAACTTGAGCTACTGCAGCTGGAGATGCCGAAATTGCTTGGAGCGGTGGAGAAGAGGATGAAGGATGCTGAAGAAGTCTGGCGAAAAGAGAAAGAGATATTATCTCTTGAGCTAAGTGATGCCAAGCTGATTGCTGCTGAAAAA
AGCAGTGAGGCTGTCATTGTGTTTAGGAAGTTTGAGGAGAGCCAAGAGACTATTAAGGAAGCAGATCTCATGCTCAATACATTGTTGAAAGCAAATGAAAATGCAAGATATGACACAGAACAGTGGAAAAATGCAGGGCAAGATTTGGAAACTGAAAGAGGTTCTTTGATAGATGAGATTCAAAGAACCAAAAATGCTTT
TGAAGAGAAGGAAGAGCAATTTGTGTCAATGCAAGAGCAGATGCAGATGAATTTACAAGAAGCAAGAGACCTGATTTCCAGTGTAAAAGAAGTTGCTGTAAACTCAATGAGAGGACTTGAGGAAGAATTTGAGGCCATTAATACAGAAATCGGTAACTTAAAGTTGGATATTTTACACGCCCTAAATGCACCAAATTCAT
GGCTTGAAGAGATCTTGTCTATTGTTGCTGAAAAAGAAAGTGCCACGTTTGTTTTGCATGCTTGCCAAGTAGAGGCACTCTTAGGAAAGCTGCGGGCACTGCATGCAGAGATTGATTCTCTTAATGTAAAACTACATGAATCCAACAGAAGTATATCTCAGCTGGAGGAGAATAACATGATCTTAAGGGGAGAAGTTGAT
AGGTCTTTCAGTTTGGGCACCAAATTAGAAGTGGAAATGAAGACAAGTTTAGGCAAAATTAATGAGAAAGAAAGACAACTGGAAAGGCTTTTGGCTCAATTAGACCAGTTGGATAAAAAAATGTCTGAATTAGAAGGACAGGAGGATGTGATGATGAAATGGTTGGCTGCTAAGGACTTTGATTTGGCTACCCTGATCTC
ACAGGTAGAAGAGAAGCACAATAATGAAATGGAAGTTGCTAGTAAACTTGAAATAATGCAAAGTGAAAAGGGGGAATTACATCTTCAACTCCAGAAGTCTTGTGAGAAGATTGAGCAGATGCAGAGAGAAAAAGAAGAATTATTTATTCAATTAGAGCAGTCTTGTAACAAAATTACACTTATGGACAATCAACAAGAAT
CGATATGTAAAGAGATTGATTTGCTTCATGTGCAGCTTCATGAATCTAACACAAGGGTGGGTGAGTTAGAGAAGTATAACATGGATTTAAAAAATGAGATTAACGAGTATGAAGTGGCTATAGCCGAGTTGCAAGTGGATTTAATTGATGATGACTCAGAAAGAACTTTTGAAGCTGTCAAGGGACGAGAAAGCTTGGGT
GGACAGCTGGAAACATTGAAAATGGAACTGTCTGATTTAAAGATGAAGAAGGAAACTCTAAGCAAAGCAATGATAGAGAAGGTATCCGAAGTTACAATTCTGCATCAAGAACTAGATCAACATACCAGGGTGCAGAGCTCTCTTCAGGAAACTCTTCAACAGGTGGATGATTTGCAAAGAGAGAATCATGAGCTATCTCT
TCAGCTGAAACAGTCTTCTGAAAGGATTATACATTTGGAAGAGGAAAAGACAGCTCTTGGACGGGAGGAATCTGAACTTCAAGAGCGATCAAGTTCATTACTCCTTGAACTTGATCAGAGTTGTGAAAGATCAGCTTATTTTGAGAAGCTTTCTGCTGACGCTAATGAAAATTTGAAAAAGAAGCATGAAGAGATTGAAG
CCCTGCATAGGCAGTTAGAGGAAGCATCTTGTAGTGCAATGTCCTTGGAACAGAAAAGTAAAGAATTACAAGACAAAGTAAGCACATTGGAGGCATCTTTTGGTGCTCTACGATCCAATCTTGATATTAAAAACAGAGATTTGATTGAGGTTCAACTTGCTCATTCCAAAATTTTAGAGGAGATTGAACACAAGCACCAA
GAGAGTGAGGACTTAATGACTAGATTGAATGCCTCTGAGATGGAAAACATGAAGTTGAGAGAGAATATTGCTAAAGAGCTTGAAACTAATGAAAGATTATTTTCTGAGCTTCAGCAAAGCAATGATGTTCTTGAAGAAATCCAGAGGGAAAATGCTAAACACGCTGTAGATATGCAAGAGAGAGAAGCAGAGATGATTAG
GCTCTTTCAGCAGAAGGAAGACATTTCGAATCACTTTTATGAAGTGGAGAGAGAGAAGGAAACAATGAAAGAAACTATGAGCAGTCAAAATGACAAACTTCAAGAATTAGCTGAGCAGATAGCTCTTAAAGATGATTATTTGAAGCAGCTTCAGGCTGTTTCTCTGCAATTGACAAAAGATAGCTGTTGTTCCATTGATA
TAGCTGAAAAGCTCGAGGCCAAACTTTCTAGCTTGCAGGACAGAGTTTTCTCTGTCATTCCTGTGGAGAGTGCAGATGAAATGCTGGTCATAGAAAAATTCCTTAAATACATATCTGAACTTGAGGAGAATGCACATATGTTTTTAGCTAAAACTGAATTGCTTGAGTTGAACTTCAAAGATATGTTTTCACAGAATGCT
GCATTAATATCAGAACTGCAGTGGAAAGAGGAAATTTTGAAAGGTTTGCAATTTGATTTGAGTTTATTGCAAGAGTCTGCATCCAAAGCAAAGGACCAAAAAGATGAAGTTCAGGAGACATCTGCAGCATTGAAATTGGTTCAAGAAGATCTATCGGCAAAAAATAATGAGCTCGACACAGTTATGTCTCATAATATAAG
GCTAGAGATAGAGCTAATGGAGAAAGTAAGCGAAGTGACCAGTCTAAACGTAGAGCTTACAAAACTAACGGAGACTCTGGCCTCTGTCTCAAATGAAAACTCTCAGCTTGCAACTGATATTGAAGACCTATTAGCAAAGAGAAATTCTGCAGAAGAGGAAATGGAAGAGAAACAGAAAGTGATTGAAGGATTAGAGGAAG
AGCTCCTTGAAATGAGTTCTCTGGTAGATCACCAGATGATCAATTCAATTGAAAGCATGAAATGTGAATTGAACAATGTTATTCGAGAGAGGGACCGTCTTAATGCAGAAGTACTTGCCCTGAATGAACAGTTGGAAATGACCCAGGCTTTTGCAGATGAACGGGAAGCTATTGCTGTGGAAGCACGTCAGGTTGCAGAG
GCAAGGAAAACTTATGCAGAAGAGAAAGAAGAAGAGACTAAGCTTTTGGAACGTTCAGTTGAAGAACTAGAGCGTACAGTAAATGCATTAGAGAGCCAGGTGGACATTGTGAAACGGGAGGCTGAAAGGCAGCGTCTGATGAGGGAGGATTTGGAATTGGAGCTGCAAGCCCTAAGACATCAGATGTCAGCAATGCAGAG
TGCACAAACCTCTATGAACATCCAAAGCTCAAGTGAGTCCATGGAGAGCGCCAATGAAAACCCAAGGGTTATGGCAGGTAGAAAGCTTGATTTGCGAGAGGCACGCAAACAGATTAAAGTTCTAGAGAAAGAAATTGAAGAACAAGATGTGGAGATTAAGAAGTGCAAAGCCCATATTACGGAATTGGTTATGAATGCAG
AAACACAGGCAAGTGAGTACCAACAAAAGTATAAAGCATTGGAATCCATGGCAAATCAAGTGAAGGCTGAGCAAACGAACTCCAGTGCTATGGCTTCATATACGAATAAGACAGGGGAAAAGACTGCTGCTAAGTCTAGAGGTTCAGGGTCACCTTTCAAATGTATTGGTTTAGGTTTAGCCCAACAGATGAATTCAGAG
AGGGATGAAGAGCTGCATGCTTCCAAGCGACGTATAGAAGAACTTGAAGGTCTTCTTGCAGCTCGACAAAAGGAGATATTCATGCTCAATTCTAGGCTGGCTGCAGCAGAGAGTATGACACATGATGTCATAAGGGATTTGCTTGGAGTTAAACTGGATATGACCAACTATGCTTCTGTACTAGATAATCAACAAGTACA
AAAGATAGCAGAAAAAGCTCGGCGTCAGAATGAAGAGTCACAGGAAAAGGAACATGAAGTGCAGAAGCTAAGACATCAATTGAATGATTTAATTGAAGAAAGAGAGAGCTGGCTTGACGAAATTAATCGTAGACAAGCGGAAATGGTGGCTGCTCGAATTGCAGCTGAAAAACTGCGACAGAGGGATCAGTTCCTGACTA
CAGAGAGTGATATGTTAAAGACAGACAATACTAGTCAGAAGAGGAAGATTGTGGAGCTTGAGGAAGAGATTAAGAAGCTTTCAGGGCAACAAAACCTACAACAACGAATTCATCATCATGCAAAAATTAAGGAAGAAAATAATACACTCAGAGCTCAACATGAAGAAATCAGTGGAAGACTAAGGCGAACAGAGGCTCTT
CTAGCTCGTGTAAATGATGAACTTGCTCGATACCGGACGGCTGATGGAAGGACACCTTATATTAGTATTGATGAAGAGCAAAGGCTGCGGAACAAACTTCAGGAAGCCGAGGAGGAAAGGGTGCAGTTGGCACAAAAGTTAGTGAGCTTGTGTAACAGCATCTTGCAGGTAGCTGGAGTTGTTCGACCACCAAGGGACAT
TGATCCTTCCTTAGCAATTGAATCATTGCAGCAACTAAAAGAGAGACTTGATTGTGCAGAGAGAGAGTTGCAAGACTTGAAGCTCAAGACAAGAATCGCCAGTGAAAAGATGCGTCTGAGCGAGCTTCGCCAACAATCAAATTCTCCGTTAAGTGTGAAGGCAAATGAGAACAATAACAGTTTTACAACTGTGCAGAACA
ACTGCCCAAGTCCTGCTAATTCTAATCCCATATAGAAAACGACTAAATGGTGTGGAGGCAGATGATAATTGAATGGACTAGAAGCCATCCATACTGATAGTTAAATTCTAGTTAACTAACATAACAAAGATGGATGTATTGGTTAAACCACTAATTTTCACATTGAGGGACAGTCGTTGTACAGCCCAGCATCAGTAGTC
TTAAAACAATAACCGATTATTGTTTTTTGGGTTGAGGCATTCTTGCATTTATGCTCACCCTATGTAGATTATTCGTACTGTATCTCTCTATTTGTAACCATATTATATTGATTTCGTAATGCATTGCGATTATTGTTTGCAATTGAATAACGCGGCTAATCTTAATTTTCAATTGTTCTCCAACCGAGTTAAGAAATTTG
CAAAGATAATACAGTTGCAACCGAGTTAAGAAATTTGCAAAGATAATACAGTTGCAACCGAGTTAAGA
>TRINITY_DN48643_c0_g1_i7 from sample A7 / Example unspliced isoform:GCTGCTCGAATTGCAGCTGAAAAGCTGCGACAGAGGGATCAATTCCTGACTACATAGAGTGATATGTTAAAGGAATGCATTTTATTACACTAGATTTTGGTTCCTGATTATAGATAATACCATTTTATAATAGGGACAGACCACTGGGTTGTAAGTCATATTGCAGAATTTGATTATCTTTTTCAACTGTATTCCAGACA
GACAATACTAGTCAGAAGAGGAAGATTGTGGAGCTTGAGGAAGAGATTAAGAAGCTTTCAGGGCAACAAAACCTACAACAACGAATTCATCATCATGCAAAAATTAAGgcaaacatattttatctaaacatattagtttagtttgtaataagaggatattgcaagatgatataagggtattttcatttggagcaaataga
ttcgtgtttataatataagtggacattagtaggacattttatactttttcataaatttattctgaatgttaaaattcaatgctgcttcatgtcgcagGAAGAAAATAATACACTCAGAGCTCAACATGAAGAAATCAGTGGAAGACTAAGGCGAACAGAGGCTCTTCTAGCTCGTGTAAATGATGAACTTGCTCGATACC
GGACGGCTGATGGAAGGACACCTTATATTAGTATTGATGAAGAGCAAAGGCTGCGGAACAAACTTCAGGAAGCCGAGGAGGAAAGGGTGCAGTTGGCACAAAAGTTAGTGAGCTTGTGTAACAGCATCTTGCAGGTAGCTGGAGTTGTTCGACCACCAAGGGACATTGATCCTTCCTTAGCAATTGAATCATTGCAGCAA
CTAAAAGAGAGACTTGATTGTGCAGAGAGAGAGTTGCAAGACTTGAAGCTCAAGACAAGAATCGCCAGTGAAAAGATGCGTCTGAGCGAGCTTCGCCAACAATCAAATTCTCCGTTAAGTGTGAAGGCAAATGAGAACAATAACAGTTTTACAACTGTGCAGAACAACTGCCCAAGTCCTGCTAATTCTAATCCCATATA
GAAAACGACTAAATGGTGTGGAGGCAGATGATAATTGAATGGACTAGAAGCCATCCATACTGATAGTTAAATTCTAGTTAACTAACATAACAAAGATGGATGTATTGGTTAAACCACTAATTTTCACATTGAGGGACAGTCGTTGTACAGCCCAGCATCAGTAGTCTTAAAACAATAACCGATTATTGTTTTTTGGGTTG
AGGCATTCTTGCATTTATGCTCACCCTATGTAGATTATTCGTACTGTATCTCTCTATTTGTAACCATATTATATTGATTTCGTAATGCATTGCGATTATTGTTTGCAATTGAATAACGCGGCTAATCTTAATTTTCAATTGTTCTCCAACCGAGTTAAGAAATTTGCAA
Intron 7 GTATTGATTC ... CTTACTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.13 | 73 | 39 | 21 |
| A2 | 26.26 | 66 | 25 | 22 |
| A3 | 28.4 | 58 | 34 | 12 |
| A4 | 36.36 | 21 | 19 | 5 |
| A5 | 39.13 | 7 | 9 | 0 |
| A6 | 22.83 | 71 | 22 | 20 |
| A7 | 23.15 | 244 | 83 | 64 |
| A8 | 23.07 | 360 | 112 | 104 |
| A9 | 24.45 | 265 | 89.5 | 82 |
| A10 | 29.2 | 137 | 53 | 60 |
>TRINITY_DN45319_c0_g1_i8 from sample A8 / Example spliced isoformGGAGAAGTGAAAGGGAAGGTCTCTCCTCTAAGATTGATCTTCTGCATGCTGCCCTTGTTGAAAAGGAAAAAGAGGTGGAAGTTCTTCAAAATCAACAAGTTAGACAAGTTTCAGAAGCTGTTCCACGGTCTACTTTGAAGGAAGATATGGAAAATGAAGCTATCAAGTCAGAACTGGAAAGAATGAGATTTGAATCTCAA
AATCTCAAAGAAAATCTTTTTGAGAAAGATCAAACTATTTTATCGGTAAGAAAAGAAATGGAAGCTGCCCTAGCAAGCTTGAAGGAAGCTGAGCTGGAGATGAAGAGAACAATAGATGAAAAAGAAGAATTGAGGAAAGCTGAGGAACAGGGAAGACATAAGATTGAATCCCTTATTAGTGACATCAAGTATTTGCAAGA
TCAGGTAAATCATAGAGAAGAAGAACTTGAGCTACTGCAGCTGGAGATGCCGAAATTGCTTGGAGCGGTGGAGAAGAGGATGAAGGATGCTGAAGAAGTCTGGCGAAAAGAGAAAGAGATATTATCTCTTGAGCTAAGTGATGCCAAGCTGATTGCTGCTGAAAAAAGCAGTGAGGCTGTCATTGTGTTTAGGAAGTTTG
AGGAGAGCCAAGAGACTATTAAGGAAGCAGATCTCATGCTCAATACATTGTTGAAAGCAAATGAAAATGCAAGATATGACACAGAACAGTGGAAAAATGCAGGGCAAGATTTGGAAACTGAAAGAGGTTCTTTGATAGATGAGATTCAAAGAACCAAAAATGCTTTTGAAGAGAAGGAAGAGCAATTTGTGTCAATGCAA
GAGCGGATGCAGATGAATTTACAAGAAGCAAGAGACCTGATTTCCAGTGTAAAAGAAGTTGCTGTAAACTCAATGAGAGGACTTGAGGAAGAATTTGAGGCCATTAATACAGAAATCGGTAACTTAAAGTTGGATATTTTACACGCCCTAAATGCACCAAATTCATGGCTTGAAGAGATCTTGTCTATTGTTGCTGAAAA
AGAAAGTGCCACGTTTGTTTTGCATGCTTGCCAAGTAGAGGCACTCTTAGGAAAGCTGCGGGCACTGCATGCAGAGATTGATTCTCTTAATGTAAAACTACATGAATCCAACAGAAGTATATCTCAGCTGGAGGAGAATAACATGATCTTAAGGGGAGAAGTTGATAGGTCTTTCAGTTTGGGCACCAAATTAGAAGTGG
AAATTAAGACAAGTTTAGGCAAAATTAATGAGAAAGAAAGACAACTGGAAAGGCTTCTGGCTCAATTAGACCAGTTGGATAAAAACATGTCTGAATTAGAAGGACAGGAGGATGTGATGATGAAATGGTTGGCTGCTAAGGACTTTGATTTGGCTACCCTGATCTCACAGGTAGAAGAGAAGCACAATAATGAAATGGAA
GTTGCTAGTAAACTTGAAATAATGCAAAGTGAAAAGGGGGAATTACATCTTCAACTCCAGAAGTCTTGTGAGAAGATTGAGCAGATGCAGAGAGAAAAAGAAGAATTATTTATTCAATTAGAGCAGTCTTGTAACAAAATTACACTTATGGACAATCAACAAGAATCGATATGTAAAGAGATTGATTTGCTTCATGTGCA
GCTTCATGAATCTAACACAAGGGTGGGTGAATTAGAGAAGTATAACATGGATTTAAAAAATGAGATTAAAGAGTATGAAGTGGCTATAGCTGAGTTGCAAGTGGATTTAATTGATGATGACTCAGAAAGAACTTTTGAAGCTGTCAAGGGACGAGAAAGCTTGGGTGGACAGCTGGAAACATTGAAAATGGAACTGTCTG
ATTTAAAGATGAAGAAGGAAACTCTAAGCAAAGCAATGATAGAGAAGGTATCCGAAGTTACAATTCTGCATCAAGAACTAGATCAACATACCAGGGTGCAGAGCTCTCTTCAGGAAACTCTTCAACAGGTGGATGATTTGCAAAGAGAAAATCATGAGCTATCTCTTCAGCTGAAACAGTCTTCTGAAAGGATTATACAT
TTGGAAGAGGAAAAGACGGCTCTTGGACGGGAGGAATCTGAACTTCAAGAGCGATCAAGTTCATTACTCCTTGAACTTGATCAGAGTTGTGAAAGATCAGCTTATTTTGAGAAGCTTTCTGCTGACGCTAATGAAAATTTGAAAAAGAAGCATGAAGAGATTGAAGCCCTGCATAGGCAGTTAGAGGAAGCATCTTGTAG
TGCAATGTCCTTGGAACAGAAAAGTAAAGAATTACAAGACAAAGTAAGCACATTGGAGGCATCTTTTGGTGCTCTACGATCCAATCTTGATATTAAAAACAGAGATTTGATTGAGGTTCAACTTGCTCATTCCAAAATTTTAGAGGAGATTGAACACAAGCACCAAGAGAGTGAGGACTTAATGACTAGATTGAATGCCT
CTGAGATGGAAAACATGAAGTTGAGAGAGAATATTGCTAAAGAGCTTGAAACTAATGAAAGATTATTTTCTGAGCTTCAGCAAAGCAATGATGTTCTTGAAGAAATCCGGAGGGAAAATGCTAAACACGCTGTAGATATGCAAGAGAGAGAAGCAGAGATGATTAGGCTCTTTCAGCAGAAGGAAGACATTTCGAATCAC
TTTTATGAAGTGGAGAGAGAGAAGGAAACAATGAAAGAAACTATGAGCAGTCAAAATGACAAACTTCAAGAATTAGCTGAGCAGATAGCTCTTAAAGATGATTATTTGAAGCAGCTTCAGGCTGTTTCTCTGCAATTGACAAAAGATAGCTGTTGTTCCATTGATATAGCTGAAAAGCTCGAGGCCAAACTTTCTAGCTT
GCAGGACAGAGTTTTCTCTGTCATTCCTGTGGAGAGTGCAGATGAAATGCTGGTCATAGAAAAATTCCTTAAATACATATCTGAACTTGAGGAGAATGCACATATGTTTTTAGCTAAAACTGAATTGCTTGAGTTGAACTTCAAAGATATGTTTTCACAGAATGCTGCATTAATATCAGAACTGCAGTGGAAAGAGGAAA
TTTTGAAAGGTTTGCAATTTGATTTGAGTTTATTGCAAGAGTCTGCATCCAAAGCAAAGGACCAAAAAGATGAAGTTCAGGAGACATCTGCAGCATTGAAATTGGTTCAAGAAGATCTATCGGCAAAAAATAATGAGCTCGACACAGTTATGTCTCATAATATAAGGCTAGAGATAGAGCTAATGGAGAAAGTAAGCGAA
GTGACCAGTCTAAACGTAGAGCTTACAAAACTAACGGAGACTCTGGCCTCTGTCTCAAATGAAAACTCTCAGCTTGCAACTGATATTGAAGACCTATTAGCAAAGAGAAATTCTGCAGAAGAGGAAATGGAAGAGAAACAGAAAGTGATTGAAGGATTAGAGGAAGAGCTCCTTGAAATGAGTTCTCTGGTAGATCACCA
GATGATCAATTCAATTGAAAGCATGAAATGTGAATTGAACAATGTTATTCGAGAGAGGGACCGTCTTAATGCAGAAGTACTTGCCCTGAATGAACAGTTGGAAATGACCCAGGCTTTTGCAGATGAACGGGAAGCTATTGCTGTGGAAGCACGTCAGGTTGCAGAGGCAAGGAAAACTTATGCAGAAGAGAAAGAAGAAG
AGACTAAGCTTTTGGAACGTTCAGTTGAAGAACTAGAGCGTACAGTAAATGCATTAGAGAGCCAGGTGGACATTGTGAAACGGGAGGCTGAAAGGCAACGTCTGATGAGGGAGGATTTGGAATTGGAGCTGCAAGCCCTAAGACATCAGATGTCAGCAATGCAGAGTGCACAAACCTCTATGAACATCCAAAGCTCAAGT
GAGTCCATGGAGAGCGCCAATGAAAACCCAAGGGTTATGGCAGGTAGAAAGCTTGATTTGCGAGAGGCACGCAAACAGATTAAAGTTCTAGAGAAAGAAATTGAAGAACAAGATGTGGAGATTAAGAAGTGCAAAGCCCATATTACGGAATTGGTTATGAATGCAGAAACACAGGCAAGTGAGTACCAACAAAAGTATAA
AGCATTGGAATCCATGGCAAATCAAGTGAAGGCTGAGCAAACGAACTCCAGTGCTATGGCTTCATATACGAATAAGACAGGGGAAAAGACTGCTGCTAAGTCTAGAGGTTCAGGGTCACCTTTCAAATGTATTGGTTTAGGTTTAGCCCAACAGATGAATTCAGAGAGGGATGAAGAGCTGCATGCTTCCAAGCGACGTA
TAGAAGAACTTGAAGGTCTTCTTGCAGCTCGACAAAAGGAGATATTCATGCTCAATTCTAGGCTGGCTGCAGCAGAGAGTATGACACATGATGTCATAAGGGATTTGCTTGGAGTTAAACTGGATATGACCAACTATGCTTCTGTACTAGATAATCAACAAGTACAAAAGATAGCAGAAAAAGCTCGGCGTCAGAATGAA
GAGTCACAGGAAAAGGAACATGAAGTGCAGAAGCTAAGACATCAATTGAATGATTTAATTGAAGAAAGAGAGAGCTGGCTTGACGAAATTAATCGTAGACAAGCGGAAATGGTGGCTGCTCGAATTGCAGCTGAAAAGCTGCGACAGAGGGATCAGTTCCTGACTACAGAGAGTGATATGTTAAAGACAGACAATACTAG
TCAGAAGAGGAAGATTGTGGAGCTTGAGGAAGAGATTAAGAAGCTTTCAGGGCAACAAAACCTACAACAACGAATTCATCATCATGCAAAAATTAAGGAAGAAAATAATACACTCAGAGCTCAACATGAAGAAATCAGTGGAAGACTAAGGCGAACAGAGGCTCTTCTAGCTCGTGTAAATGATGAACTTGCTCGATACC
GGACGGCTGATGGAAGGACACCTTATATTAGTATTGATGAAGAGCAAAGGCTGCGGAACAAACTTCAGGAAGCCGAGGAGGAAAGGGTGCAGTTGGCACAAAAGTTAGTGAGCTTGTGTAACAGCATCTTGCAGGTAGCTGGAGTTGTTCGACCACCAAGGGACATTGATCCTTCCTTAGCAATTGAATCATTGCAGCAA
CTAAAAGAGAGACTTGATTGTGCAGAGAGAGAGTTGCAAGACTTGAAGCTCAAGACAAGAATCGCCAGTGAAAAGATGCGTCTGAGCGAGCTTCGCCAACAATCAAATTCTCCGTTAAGTGTGAAGGCAAATGAGAACAATAACAGTTTTACAACTGTGCAGAACAACTGCCCAAGTCCTGCTAATTCTAATCCCATATA
GAAAACGACTAAATGGTGTGGAGGCAGATGATAATTGAATGGACTAGAAGCCATCCATACTGATAGTTAAATTCTAGTTAACTAACATAACAAAGATGGATGTATTGGTTAAACCACTAATTTTCACATTGAGGGACAGTCGTTGTACAGCCCAGCATCAGTAGTCTTAAAACAATAACCGATTATTGTTTTTTGGGTTG
AGGCATTCTTGCATTTATGCTCACCCTATGTAGATTATTCGTACTGTATCTCTCTATTTGTAACCATATTATATTGATTTCGTAATGCATTGCGATTATTGTTTGCAATTGAATAACGCGGCTAATCTTAATTTTCAATTGTTCTCCAACCGAGTTAAGAAATTTGCAAGATATACAGTTGCAACCGAGTTAAGAAATTT
GCAAAGATAATACAGTTGCAACCGAGTTAAGAAATTTGCAAAGATATACCGTTGCAAGACCATTTGAAGATTTACAAAAAATGAAGTTTTTTGAATACCCATTCACATTTTGACATATATATGACAAATTAATTTTCATCCA
>TRINITY_DN45319_c0_g1_i7 from sample A8 / Example unspliced isoform:AAGGCTGCGGAACAAACTTCAGGTACCTTGATGCCATCCTATCTATCCTTTGACCAAAGAAAGTTGTAGACCCTTTTAATCTTTCATTTTCGTGATGCGTCTGCTTTTTTGTCAAACAATGGATTTCCCCTAAAGTAGGAAAAAGATGATGCTTTTCAGAATAAACACTGGCTTGAGTATTTATTAGGCAATCTGATTCC
ATATTTCCAGGAAGCCGAGGAGGAAAGGGTGCAGTTGGCACAAAAGTTAGTGAGCTTGTGCAACAGCATCTTGCAGGTTAGTAGAATGTACCGAATATTCATGGATTGTGTGCATGTACAGAATACTCTCTAAAACAATGCAAACATGGAACCAAACAGGTAGCTGGAGTTGTTCGACCACCAAGGGACATTGATCCTTC
CTTAGCAATTGAATCATTGCAGCAACTAAAAGAGAGACTTGATTGTGCAGAGAGAGAGTTGCAAGACTTGAAGCTCAAGgtattgattcgagtgccattattacttattttagcatagagctatatattttgaaactaaaaatgaagattcacctggttgaaagacccagcaaaattcactcacaacttcttgatttttt
gcttcagagcatatagatttcttgcaccattcactctcacttgcaacatgacactctggtgtttgcacacaccatttatgaccagcatttctttttggttccgcatgatcatgctgccgcttgacgtctgtatttcatgcttgcattcattgtttggtgttctcttactacagACAAGAATCGCCAGTGAAAAGATGCGT
CTGAGCGAGCTTCGCCAACAATCAAATTCTCCGTTAAGTGTGAAGGCAAATGAGAACAATAACAGTTTTACAACTGTGCAGAACAACTGCCCAAGTCCTGCTAATTCTAATCCCATATAGAAAACGACTAAATGGTGTGGAGGCAGATGATAATTGAATGGACTAGAAGCCATCCATACTGATAGTTAAATTCTAGTTAA
CTAACATAACAAAGATGGATGTATTGGTTAAACCACTAATTTTCACATTGAGGGACAGTCGTTGTACAGCCCAGCATCAGTAGTCTTAAAACAATAACCGATTATTGTTTTTTGGGTTGAGGCATTCTTGCATTTATGCTCACCCTATGTAGATTATTCGTACTGTATCTCTCTATTTGTAACCATATTATATTGATTTC
GTAATGCATTGCGATTATTGTTTGCAATTGAATAACGCGGCTAATCTTAATTTTCAATTGTTCTCCAACCGAGTTAAGAAATTTGCAAGATATACAGTTGCAACCGAGTTAAGAAATTTGCAAAGATAATACAGTTGCAACCGAGTTAAGAAATTTGCAAAGATATACCGTTGCAAGACCATTTGAAGATTTACAAAAAA
TGAAGTTTTTTGAATACCCATTCACATTTTGACATATATATGACAAATTAATTTTCATCCA