sp|Q9ZNV9|AHP1_ARATH ----> Histidine-containing phosphotransfer protein 1
Intron 1 GTACACATGT ... AATCTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.38 | 15.9 | 5 | 21.5 |
| A2 | 69.28 | 16.5 | 5.3 | 37.1 |
| A3 | 59.13 | 30.6 | 0.8 | 44.5 |
| A4 | 61.52 | 15.8 | 3.4 | 25.4 |
| A5 | 79.03 | 5 | 3 | 18.8 |
| A6 | 51.57 | 89.5 | 3.5 | 96.4 |
| A7 | 53.99 | 103 | 4.5 | 121.7 |
| A8 | 49.83 | 73.6 | 6.1 | 74.5 |
| A9 | 51.96 | 103.5 | 5 | 113.2 |
| A10 | 54.77 | 103.4 | 4 | 126 |
>TRINITY_DN109839_c0_g1_i4 from sample A1 / Example spliced isoformATCACGAGTTTGGCGGAGAGGGCAGAGGATAGCAGGGATCTGAGAAGGGGCTCGAACTTAATTCAAAGAAGAAGAAGAAGAGGAGGTAGGAGAGGGAGGAATGGCAGTTTCTCAAATGCAGCAGCGTTACATTAATTTTACCAATTCTCTGTTCCAGGAGGGATTCGTGGATGAGCAATTCACACAGCTTCAGCAGCTGC
AAGATGAGAGCAATCCCGATTTTGTTGCAGAGGTCGTTTCTTTGTTCTTCGAGGATTCCGATAAACTGTTGGGTGACTTGTCAAAGACTCTGTATGTCACTGCATACTTATCTGCAGTCTACTGGTTCTTATCTAATAGAAACATCTCTTGTTTTTTAT
>TRINITY_DN109839_c0_g1_i5 from sample A1 / Example unspliced isoform:AGCAGGGATCTGAGAAGGgtacacatgtcaagctctctactgctatttcgtggcttcaacgcatttatccttcatcattaatattacggatctcacgggccccaagatattggcataaatttctgtttttctctgaatcttccagGGCTCGAACTTAATTCAAAGAAGAAGAAGAAGAGGAGGTAGGAGAGGGAGGAATG
GCAGTTTCTCAAATGCAGCAGCGTTACATTAATTTTACCAATTCTCTGTTCCAGGAGGGATTCGTGGATGAGCAATTCACACAGCTTCAGCAGCTGCAAGATGAGAGCAATCCCGATTTTGTTGCAGAGGTCGTTTCTTTGTTCTTCGAGGATTCCGATAAACTGTTGGGTGACTTGTCAAAGACTCTCAATCAGGAACC
AGTTGATTTCAAGAGAGTTGATGGCTGTGTGCACCAATTCAAGGGTAGCAGCTCAAGTATAGGAGCACGGCGAGTAATGAATACGTGTATATCGTTTCGTGGATTTTGTCAAGATAAAAATAAAGAAGGATGCTTATATTGCTTGCAACAAATGAAGCAGGAGTGTTACCTCGTGAAAAACAAGCTGGAGACTCTATTAC
AGCTTGAGAAACAGATTGTAGAAGCTGGTGGAACAGTTCCCATGGCAGAGTAAGCACCGAGACTTAATATTCCATTTCTGGGAGAATTGAGAAACTGGAGGAAAAGTGAATTACTATCCTGGAGTGGCTGAGTGACAGCTAAACCTCAAGGCAGAGGGGGATTTAGAATTAATGCTAAAATATCAACTTTCATTTCTGTA
AATTATAAATATATTAGCAGCTATCCTGAATAGATCAACAAAACAAGTATGCTATAGTGAAGAGCAGCTGGCGGTTGTGCCAGCTAGTAATGAATTCAATTTTTCTTTATGTTGTTCTATATATACACGGAAGAGTAAAATTGGCACCAGTGATATGGGACAATAGATGAGGCCTCTATTACCAATGGAGGTTGGTTACC
TTCCGTTCTGATGCATTATATGCAAGGAAGGTTATGTAATAACTGCCAACTTTACTAAACTGTGTTAGTTCATTTTGATCAATGCATGAGTTTCAAATCTTAGAAGTGTTTCATTGCCATTTGTTAAAATTCACCTGGAATAACAATTACTTTCAAGTTTATAGAAATTAAAGCTCAATGAAGGATTGTGTACAA
Intron 2 GTACACATGT ... AATCTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.28 | 15.7 | 5 | 21 |
| A2 | 72.45 | 14.7 | 3 | 38 |
| A3 | 61.12 | 29.3 | 1 | 46 |
| A4 | 61.05 | 15.3 | 2 | 24 |
| A5 | 77.27 | 5 | 2 | 17 |
| A6 | 54.99 | 83.3 | 2 | 101 |
| A7 | 56.85 | 96.3 | 3 | 126 |
| A8 | 51.57 | 72.3 | 1 | 77 |
| A9 | 54.46 | 99 | 4 | 118 |
| A10 | 56.85 | 98.3 | 4 | 129 |
>TRINITY_DN109839_c0_g1_i4 from sample A1 / Example spliced isoformATCACGAGTTTGGCGGAGAGGGCAGAGGATAGCAGGGATCTGAGAAGGGGCTCGAACTTAATTCAAAGAAGAAGAAGAAGAGGAGGTAGGAGAGGGAGGAATGGCAGTTTCTCAAATGCAGCAGCGTTACATTAATTTTACCAATTCTCTGTTCCAGGAGGGATTCGTGGATGAGCAATTCACACAGCTTCAGCAGCTGC
AAGATGAGAGCAATCCCGATTTTGTTGCAGAGGTCGTTTCTTTGTTCTTCGAGGATTCCGATAAACTGTTGGGTGACTTGTCAAAGACTCTGTATGTCACTGCATACTTATCTGCAGTCTACTGGTTCTTATCTAATAGAAACATCTCTTGTTTTTTAT
>TRINITY_DN109839_c0_g1_i3 from sample A1 / Example unspliced isoform:AGCAGGGATCTGAGAAGGgtacacatgtcaagctctctactgctatttcgtggcttcaacgcatttatccttcatcattaatattacggatctcacggggcccaagatattggcataaattttcgagatctcgttttgtttttttttctctgaatcttccagGGCTCGAACTTAATTCAAAGAAGAAGAAGAAGAGGAGG
TAGGAGAGGGAGGAATGGCAGTTTCTCAAATGCAGCAGCGTTACATTAATTTTACCAATTCTCTGTTCCAGGAGGGATTCGTGGATGAGCAATTCACACAGCTTCAGCAGCTGCAAGATGAGAGCAATCCCGATTTTGTTGCAGAGGTCGTTTCTTTGTTCTTCGAGGATTCCGATAAACTGTTGGGTGACTTGTCAAAG
ACTCTCAATCAGGAACCAGTTGATTTCAAGAGAGTTGATGGCTGTGTGCACCAATTCAAGGGTAGCAGCTCAAGTATAGGAGCACGGCGAGTAATGAATACGTGTATATCGTTTCGTGGATTTTGTCAAGATAAAAATAAAGAAGGATGCTTATATTGCTTGCAACAAATGAAGCAGGAGTGTTACCTCGTGAAAAACAA
GCTGGAGACTCTATTACAGCTTGAGAAACAGATTGTAGAAGCTGGTGGAACAGTTCCCATGGCAGAGTAAGCACCGAGACTTAATATTCCATTTCTGGGAGAATTGAGAAACTGGAGGAAAAGTGAATTACTATCCTGGAGTGGCTGAGTGACAGCTAAACCTCAAGGCAGAGGGGGATTTAGAATTAATGCTAAAATAT
CAACTTTCATTTCTGTAAATTATAAATATATTAGCAGCTATCCTGAATAGATCAACAAAACAAGTATGCTATAGTGAAGAGCAGCTGGCGGTTGTGCCAGCTAGTAATGAATTCAATTTTTCTTTATGTTGTTCTATATATACACGGAAGAGTAAAATTGGCACCAGTGATATGGGACAATAGATGAGGCCTCTATTACC
AATGGAGGTTGGTTACCTTCCGTTCTGATGCATTATATGCAAGGAAGGTTATGTAATAACTGCCAACTTTACTAAACTGTGTTAGTTCATTTTGATCAATGCATGAGTTTCAAATCTTAGAAGTGTTTCATTGCCATTTGTTAAAATTCACCTGGAATAACAATTACTTTCAAGTTTATAGAAATTAAAGCTCAATGAAG
GATTGTGTACAA