NA ----> NA
Intron 1 GTATGTGGTT ... TAGGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.29 | 8 | 10 | 9 |
| A2 | 39.39 | 10 | 6 | 7 |
| A3 | 29.03 | 22 | 18 | 0 |
| A4 | 64.71 | 6 | 12 | 10 |
| A5 | 85.71 | 1 | 9 | 3 |
| A6 | 100 | 0 | 1 | 0 |
| A7 | 50 | 3 | 3 | 3 |
| A8 | 0 | 3 | 0 | 0 |
| A9 | 33.33 | 3 | 3 | 0 |
| A10 | 20 | 10 | 5 | 0 |
>TRINITY_DN115549_c0_g1_i14 from sample A1 / Example spliced isoformATCAGTTGTACTAACCGCAACAAAATCAGGAACCCTCTTTGGTGAGAGTGATAATTTCTGGTTCCATTTGTCAATTATTTCCATTTCCACACTGAATTGACGATGGAAATCCCCACACTATCATGGCTTCGGCAGAAATTGAAGTTGAATCGCCCATATAACGAACAGCAACGACAACAGGCGCAGAAATTGCAGGAAGA
TTATGATCGATGGCTGAAGCAGGTCCAAGTTCTCAGCAGGGCGATCAGGGCCGACGATATTAATGATCTGCAGCAAATTCTTAGTTCCATGATCCTTTCAGAATGCGTTTACAAAAGAGATACGACAGAGATGATCAACGCAGTGAATACATTCAAGAAAGATTTCGGAGGGCAGCTTATAAAGCTAAAACGGGTTCAAC
CTTGTCTGGACCATGTGCCTCACAGGTATTTATTGGCAGATTCAGGTGACACTCTTTTCGCTTCATTTATTGGAACAAAGCAGTACAGGGATTTCATAGCAAATGCAAACATATTCCAAGGAGCCGTCTTCGATGAAGACGCCAGTGAAGATAATTTACCAAGTGAAGAAAGTGAATCAAATAAAGAAAGGCCAGAGGCT
AGTATTAGTAAGTTGAGAGGGACATCATATGAGGGAAGTCAGTTAGGATCGTCTTCTGACAAACCCCTTTCACAAACAAAGTCATGGGAACGTGGATTTAAACCTGCTGCACATCAGGGATTTCTTGCCCGTGCTAAGCGTATACCTGCAGTGGAGCTATATAAGCTTGCACAGAAACGTGGTCTGAAACTTGTACTTTG
TGGGCATTCCCTCGGTGGTGCGGTTGCAGTGCTAGCAACACTTGCTATTTTGAGGGCCATTCCATCAGCTTCATTACCAAAGGGTGGGGATGGCATTCAGGTCAAGTGCATTACATTTTCACAGCCTCCAGTTGGTAATGCTGCTCTAAGAGAATATGTTCATAGGAACGGGTGGCAACGGCATTTTAGAACATACTGTA
TTCCAGAAGATGTAGTGCCTCGAATTTTATCACCAGCTTATTTTCAGCATTATATTGAACAACTATCAGAAGGTGATTCTCCAAGTACTGCCTTTAATCCCTCATCAGCAAGTGCTGCTAAAGGATCAAATGTGGAGGAACTAAGGGTGCAAAAAACAACACCAAATGAAGGTGAACGGTTGGTACTGGGTCTAGGTCCT
GTTCAAAACTCTTTTCATAGACTCTCTAGATTGGTGCCTATTTTTGGTGTCCAGAAACAGCTTGATTGGTTCAGAGGAAGAAAAGAAGATGCAAATGCTCCTAAAGGGGACGATTCTGATTCAACTTTAAAAGCAACTTCATCGCTACAAGCTCTTGAAATCCACGAAGAGACAGACGGAGTAACCTTCAGACCATCTCC
CAATGCTGATAAAATATCCTCTGAGGTGATCAAGAAGAAATCAACTGAAAGCAAGGAATCAAGAAAAGAAGAATATGTACAATGGTACAAAGTGCCCAATTTACCTACATATGTTCCTTTTGGTCAGGTAAGAGCATACCGTTTATCTTCTAAGCTTGTAGTGAGTGCTATATATCATAGCTGATCTATATTGATTGAAC
ATATTGTTAAGGTTTTGACCCTAGTTTGCTATGATTTTTTTTGATAAAATAAAGGAGAATAATCTATGTAAATATTGTATTGACCTTGCATGTTATTTGTGCATATTGATATTAATTTAGTTGTCTTATCATTTAATGTTAGTCAATATGTATTAGTAGTGAATATATCAATAATTCTTAATCTTATAAGATAAGATAAT
TTATTGATGTCCAACAAATGGCCAAAAATATATGTCAATGGGACTAGGAAATACAATCATTTATACAAAGTTGTAGGATTGCTCTAGGCTACTTCCAAAACATAAAACAAAACAACACATGAAATACATAAAATAAATATTTAGTACATGAAAAAAAGAGAAGGAAGAGTGCAAGATTCAATAGCATCTATAGAAGATGG
TGAGGTAGAGTGTGAGGAGGAAGAAATATCTTTCGTAGCTTCAATCACTAAGAAAGGCCCAATATTCTCTTTGATGATGTCTTCCAGAGACTATCCAGGTTGAGAGGACTTGGCTGGGTGATCTTGGGAGGTGCATGGGATCCATGAGCAAGGTTTCTCCTTACATTTGATGTTGAGGAAAATAATCTTGTGATATGTGT
CTGACCTAGATTGGACAATCAATCTAGTCTATGTAGAGGATGGTTACTCCTAAATCTTGTGGGGAAGACTTGACAGATCCTAGGGCAATAGGTTGTATGCGGTTTCTCTACTGGGTGCCCATTGCTTAGTGCAACTAAGTGCTAAAATTGATTGAAAAAATGAGGTAAGTAATTTGACTAGACGGGGTCTTGAAGAAACA
TGTAGCATTTGCCATTTGAGGGTCACCTCCTCATGCATGTAAAGATCTAGACATGTTTGCTCAAGATATAGGATTAAGGTGGATATGTGTCTCTCTTAATTCCAAAAAAG
>TRINITY_DN115549_c0_g1_i16 from sample A1 / Example unspliced isoform:CCTCTCCCCATCCTTCCCTTTTTCTCATTGATGGCATTGTTGTGCATTTGTAGGTATGAATTTGTGATTACTTTATCCTTGTCAACATGGATACCAACCAAGTAGCAATCTAGCCATTTTGATTAGGATGTCAGGCATATTTTAATTGTGATATAGGCTAATCCAACGGGTGTTTTATTATATAAAAATTTAAAATCTTG
GAAAATGCTACATTACATTTTTGTTATGGAGATTAACAAATGCAGTGGATTTAAATTTCTTTACCATCTTTACTTGCAGGTATTTATTGGCAGATTCAGGTGACACTCTTTTCGCTTCATTTATTGGAACAAAGCAGTACAGGGATTTCATAGCAAATGCAAACATATTCCAAGGAGCCGTCTTCGATGAAGACGCCAGT
GAAGATAATTTACCAAGTGAAGAAAGTGAATCAAATAAAGAAAGGCCAGAGGCTAGTATTAGTAAGTTGAGAGGGACATCATATGAGGGAAGTCAGTTAGGATCGTCTTCTGACAAACCCCTTTCACAAACAAAGTCATGGGAACGTGGATTTAAACCTGCTGCACATCAGGGATTTCTTGCCCGTGCTAAGCGTATACC
TGCAGTGGAGCTATATAAGCTTGCACAGAAACGTGGTCTGAAACTTGTACTTTGTGGGCATTCCCTCGGTGGTGCGGTTGCAGTGCTAGCAACACTTGCTATTTTGAGGGCCATTCCATCAGCTTCATTACCAAAGGGTGGGGATGGCATTCAGGTCAAGTGCATTACATTTTCACAGCCTCCAGTTGGTAATGCTGCTC
TAAGAGAgtatgtggtttgatgcgatgcaaaaatggttttctccacttctgtgccattttttggttctatgtgcatttttactgataacaaggttttaggatttagaagatttgcaactgctattcttttcttgtatatttttgaagaaatgaaagcatgcatttgtgctaagttattctgttaggtttcagATATGTTC
ATAGGAACGGGTGGCAACGGCATTTTAGAACATACTGTATTCCAGAAGATGTAGTGCCTCGAATTTTATCACCAGCTTATTTTCAGCATTATATTGAACAACTATCAGAAGGTGATTCTCCAAGTACTGCCTTTAATCCCTCATCAGCAAGTGCTGCTAAAGGATCAAATGTGGAGGAACTAAGGGTGCAAAAAACAACA
CCAAATGAAGGTGAACGGTTGGTACTGGGTCTAGGTCCTGTTCAAAACTCTTTTCATAGACTCTCTAGATTGGTGCCTATTTTTGGTGTCCAGAAACAGCTTGATTGGTTCAGAGGAAGAAAAGAAGATGCAAATGCTCCTAAAGGGGACGATTCTGATTCAACTTTAAAAGCAACTTCATCGCTACAAGCTCTTGAAAT
CCACGAAGAGACAGACGGAGTAACCTTCAGACCATCTCCCAATGCTGATAAAATATCCTCTGAGGTGATCAAGAAGAAATCAACTGAAAGCAAGGAATCAAGAAAAGAAGAATATGTACAATGGTACAAAGTGCCCAATTTACCTACATATGTTCCTTTTGGTCAGCTCTACTTGTTGGAAAAGTCATCAGTTGAACCAT
TATCTGCTTCAGAGTACGC
Intron 2 GTTATCTCAA ... TGAATGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.04 | 11.7 | 19 | 7.3 |
| A2 | 39.39 | 10 | 10 | 3 |
| A3 | 71.43 | 2 | 6 | 4 |
| A4 | 35.35 | 12 | 8 | 5 |
| A5 | 47.83 | 6 | 5 | 6 |
| A6 | 0 | 1 | 0 | 0 |
| A7 | 0 | 2 | 0 | 0 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | -1 | 0 | 0 | 0 |
| A10 | 6.06 | 9 | 0 | 1.3 |
>TRINITY_DN115549_c0_g1_i5 from sample A1 / Example spliced isoformATCAGTTGTACTAACCGCAACAAAATCAGGAACCCTCTTTGGTGAGAGTGATAATTTCTGGTTCCATTTGTCAATTATTTCCATTTCCACACTGAATTGACGATGGAAATCCCCACACTATCATGGCTTCGGCAGAAATTGAAGTTGAATCGCCCATATAACGAACAGCAACGACAACAGGCGCAGAAATTGCAGGAAGA
TTATGATCGATGGCTGAAGCAGGTCCAAGTTCTCAGCAGGGCGATCAGGGCCGACGATATTAATGATCTGCAGCAAATTCTTAGTTCCATGATCCTTTCAGAATGCGTTTACAAAAGAGATACGACAGAGATGATCAACGCAGTGAATACATTCAAGAAAGATTTCGGAGGGCAGCTTATAAAGCTAAAACGGGTTCAAC
CTTGTCTGGACCATGTGCCTCACAGGTATTTATTGGCAGATTCAGGTGACACTCTTTTCGCTTCATTTATTGGAACAAAGCAGTACAGGGATTTCATAGCAAATGCAAACATATTCCAAGGAGCCGTCTTCGATGAAGACGCCAGTGAAGATAATTTACCAAGTGAAGAAAGTGAATCAAATAAAGAAAGGCCAGAGGCT
AGTATTAGTAAGTTGAGAGGGACATCATATGAGGGAAGTCAGTTAGGATCGTCTTCTGACAAACCCCTTTCACAAACAAAGTCATGGGAACGTGGATTTAAACCTGCTGCACATCAGGGATTTCTTGCCCGTGCTAAGCGTATACCTGCAGTGGAGCTATATAAGCTTGCACAGAAACGTGGTCTGAAACTTGTACTTTG
TGGGCATTCCCTCGGTGGTGCGGTTGCAGTGCTAGCAACACTTGCTATTTTGAGGGCCATTCCATCAGCTTCATTACCAAAGGGTGGGGATGGCATTCAGGTCAAGTGCATTACATTTTCACAGCCTCCAGTTGGTAATGCTGCTCTAAGAGAGTATGTGGTTTGATGCGATGCAAAAATGGTTTTCTCCACTTCTGTGC
CATTTTTTGGTTCTATGTGCATTTTTACTGATAACAAGGTTTTAGGATTTAGAAGATTTGCAACTGCTATTCTTTTCTTGTATATTTTTGAAGAAATGAAAGCATGCATTTGTGCTAAGTTATTCTGTTAGGTTTCAGATATGTTCATAGGAACGGGTGGCAACGGCATTTTAGAACATACTGTATTCCAGAAGATGTAG
TGCCTCGAATTTTATCACCAGCTTATTTTCAGCATTATATTGAACAACTATCAGAAGGTGATTCTCCAAGTACTGCCTTTAATCCCTCATCAGCAAGTGCTGCTAAAGGATCAAATGTGGAGGAACTAAGGGTGCAAAAAACAACACCAAATGAAGGTGAACGGTTGGTACTGGGTCTAGGTCCTGTTCAAAACTCTTTT
CATAGACTCTCTAGATTGGTGCCTATTTTTGGTGTCCAGAAACAGCTTGATTGGTTCAGAGGAAGAAAAGAAGATGCAAATGCTCCTAAAGGGGACGATTCTGATTCAACTTTAAAAGCAACTTCATCGCTACAAGCTCTTGAAATCCACGAAGAGACAGACGGAGTAACCTTCAGACCATCTCCCAATGCTGATAAAAT
ATCCTCTGAGGTGATCAAGAAGAAATCAACTGAAAGCAAGGAATCAAGAAAAGAAGAATATGTACAATGGTACAAAGTGCCCAATTTACCTACATATGTTCCTTTTGGTCAGGTAAGAGCATACCGTTTATCTTCTAAGCTTGTAGTGAGTGCTATATATCATAGCTGATCTATATTGATTGAACATATTGTTAAGGTTT
TGACCCTAGTTTGCTATGATTTTTTTTGATAAAATAAAGGAGAATAATCTATGTAAATATTGTATTGACCTTGCATGTTATTTGTGCATATTGATATTAATTTAGTTGTCTTATCATTTAATGTTAGTCAATATGTATTAGTAGTGAATATATCAATAATTCTTAATCTTATAAGATAAGATAATTTATTGATGTCCAAC
AAATGGCCAAAAATATATGTCAATGGGACTAGGAAATACAATCATTTATACAAAGTTGTAGGATTGCTCTAGGCTACTTCCAAAACATAAAACAAAACAACACATGAAATACATAAAATAAATATTTAGTACATGAAAAAAAGAGAAGGAAGAGTGCAAGATTCAATAGCATCTATAGAAGATGGTGAGGTAGAGTGTGA
GGAGGAAGAAATATCTTTCGTAGCTTCAATCACTAAGAAAGGCCCAATATTCTCTTTGATGATGTCTTCCAGAGACTATCCAGGTTGAGAGGACTTGGCTGGGTGATCTTGGGAGGTGCATGGGATCCATGAGCAAGGTTTCTCCTTACATTTGATGTTGAGGAAAATAATCTTGTGATATGTGTCTGACCTAGATTGGA
CAATCAATCTAGTCTATGTAGAGGATGGTTACTCCTAAATCTTGTGGGGAAGACTTGACAGATCCTAGGGCAATAGGTTGTATGCGGTTTCTCTACTGGGTGCCCATTGCTTAGTGCAACTAAGTGCTAAAATTGATTGAAAAAATGAGGTAAGTAATTTGACTAGACGGGGTCTTGAAGAAACATGTAGCATTTGCCAT
TTGAGGGTCACCTCCTCATGCATGTAAAGATCTAGACATGTTTGCTCAAGATATAGGATTAAGGTGGATATGTGTCTCTCTTAATTCCAAAAAAG
>TRINITY_DN115549_c0_g1_i9 from sample A1 / Example unspliced isoform:ATCAGTTGTACTAACCGCAACAAAATCAGGAACCCTCTTTGGTGAGAGTGATAATTTCTGGTTCCATTTGTCAATTATTTCCATTTCCACACTGAATTGACGATGGAAATCCCCACACTATCATGGCTTCGGCAGAAATTGAAGTTGAATCGCCCATATAACGAACAGCAACGACAACAGGCGCAGAAATTGCAGGAAGA
TTATGATCGATGGCTGAAGCAGGTCCAAGTTCTCAGCAGGGCGATCAGGGCCGACGATATTAATGATCTGCAGCAAATTCTTAGTTCCATGATCCTTTCAGAATGCGTTTACAAAgttatctcaatttaatttcttttaaatatcctttctttttcattaattctgtgaggttcagaacaccctgaataactttacaaaa
tgatgcaaatgaatggcagAGAGATACGACAGAGATGATCAACGCAGTGAATACATTCAAGAAAGATTTCGGAGGGCAGCTTATAAAGCTAAAACGGGTTCAACCTTGTCTGGACCATGTGCCTCACAGGTCCTATTCTTCTACGCCCTTAAATTCTTGCAAAATATCATGTCCTCTCTCTCTATCTATATATATAAAAG
TCACTTGGTTCGTGTTCGTAATTGTGTTTGTGACTGAATTCGGCTCT
Intron 3 GTCCAAGTTC ... TGAATGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 79.31 | 3 | 15 | 8 |
| A2 | 81.82 | 1 | 6 | 3 |
| A3 | 88.24 | 1 | 11 | 4 |
| A4 | 66.67 | 5 | 15 | 5 |
| A5 | 61.9 | 4 | 7 | 6 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 100 | 0 | 1 | 0 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | -1 | 0 | 0 | 0 |
| A10 | 33.33 | 4 | 0 | 4 |
>TRINITY_DN94048_c0_g1_i5 from sample A5 / Example spliced isoformAAATATATCAGTTGTACTAACCGCAACAAAATCAGGAACCCTCTTTGGTGAGAGTGATAATTTCTGGTTCCATTTGTCAATTATTTCCATTTCCACACTGAATTGACGATGGAAATCCCCACACTATCATGGCTTCGGCAGAAATTGAAGTTGAATCGCCCATATAACGAACAGCAACGACAACAGGCGCAGAAATTGCA
GGAAGATTATGATCGATGGCTGAAGCAGAGAGATACGACAGAGATGATCAACGCAGTGAATACATTCAAGAAAGATTTCGGAGGGCAGCTTATAAAGCTAAAACGGGTTCAACCTTGTCTGGACCATGTGCCTCACAGGTATTTATTGGCAGATTCAGGTGACACTCTTTTCGCTTCATTTATTGGAACAAAGCAGTACA
GGGATTTCATAGCAAATGCAAACATATTCCAAGGAGCCGTCTTCGATGAAGACGCCAGTGAAGATAATTTACCAAGTGAAGAAAGTGAATCAAATAAAGAAAGGCCAGAGGCTAGTATTAGTAAGTTGAGAGGGACATCATATGAGGGAAGTCAGTTAGGATCGACTTCTGACAAACCCCTTTCACAAACAAAGTCATGG
GAACGTGGATTTAAACCTGCTGCACATCAGGGATTTCTTGCCCGTGCTAAGCGTATACCTGCAGTGGAGCTATATAAGCTTGCACAGAAACGTGGTCTGAAACTTGTACTTTGTGGGCATTCCCTCGGTGGTGCGGTTGCAGTGCTAGCAACACTTGCTATTTTGAGGGCCATTCCATCAGCTTCATTACCAAAGGGTGG
GGATGGCATTCAGGTCAAGTGCATTACATTTTCACAGCCTCCAGTTGGTAATGCTGCTCTAAGAGAGTATGTGGTTTGATGCGATGCAAAAATGGTTTTCTCCACTTCTGTGCCATTTTTTGGTTCTATGTGCATTTTTACTGATAACAAGGTTTTAGGATTTAGAAGATTTGCA
>TRINITY_DN94048_c0_g1_i2 from sample A5 / Example unspliced isoform:AAATATATCAGTTGTACTAACCGCAACAAAATCAGGAACCCTCTTTGGTGAGAGTGATAATTTCTGGTTCCATTTGTCAATTATTTCCATTTCCACACTGAATTGACGATGGAAATCCCCACACTATCATGGCTTCGGCAGAAATTGAAGTTGAATCGCCCATATAACGAACAGCAACGACAACAGGCGCAGAAATTGCA
GGAAGATTATGATCGATGGCTGAAGCAGgtccaagttctcagcagggcgatcagggccgacgatattaatgatctgcagcaaattcttagttccatgatcctttcagaatgcgtttacaaagttatctcaatttaatttcttttaaatatcctttctttttcattaattctgtgaggttcagaataccctgaataacttt
acaaaatgatgcaaatgaatggcagAGAGATACGACAGAGATGATCAACGCAGTGAATACATTCAAGAAAGATTTCGGAGGGCAGCTTATAAAGCTAAAACGGGTTCAACCTTGTCTGGACCATGTGCCTCACAGGTATTTATTGGCAGATTCAGGTGACACTCTTTTCGCTTCATTTATTGGAACAAAGCAGTACAGGG
ATTTCATAGCAAATGCAAACATATTCCAAGGAGCCGTCTTCGATGAAGACGCCAGTGAAGATAATTTACC