sp|Q9FV71|E2FB_ARATH ----> Transcription factor E2FB
Intron 1 GTAAGGTTTC ... ATGTCTGGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 76.92 | 3 | 1 | 19 |
| A2 | 75 | 3 | 6 | 12 |
| A3 | 56.86 | 11 | 12 | 17 |
| A4 | 77.78 | 5 | 8 | 27 |
| A5 | 57.14 | 3 | 3 | 5 |
| A6 | 72.09 | 6 | 12 | 19 |
| A7 | 70.53 | 14 | 18 | 49 |
| A8 | 72.97 | 5 | 9 | 18 |
| A9 | 76.47 | 8 | 18 | 34 |
| A10 | 78.57 | 6 | 18 | 26 |
>TRINITY_DN45292_c3_g1_i2 from sample A8 / Example spliced isoformAAGAAAAGAAAAGGCGCGACGATACATTCGAACACAGGAATCAAAACACCAAACTAGTAATAACTTCGTCCTTCCTCCTAAATTCCTTGTTAATAATAATAATAATATTTATTTTTATTCTTCACTCCCTCCCTTGTTCCCTCCATATTTATCCATCCGAACTCAATTCCGCCCTCTCCCTCCAATTTTTTTTTTTTCTC
TTTTACTGATTCGCAATTTCCTTTCTGCTCCTCATCGGATCCCATATCTCCCCTGCAACGCCACACCCTCTTTTCCCAACACCAACACCAGCTCGGTCGCCCACTGTTACAGTCTAATCCAATCCCTTGTCAATATCCACTCCACTAATTGGGGTGGTTTACGGTCTCTTCTGCATTTGTTATGCCCTTTCCCTTTTCCC
TTTCCCTCCCCGAGGTGAGGTCAGATATCACCAACGGCGCTAGCAGTTCCAGTACGCTCGCGGATCCACTTTTTACCGCGTTCCGGTCGAGTATAATCTAGCGGATTTACCTCCAATTCTATCCCAGAAGAGCTGGGAATCGATTCCAGCAGCCAGCAGGGCCGTTGATCCAGCCCCTGAAACGGCACAGTGCCTTTACA
TCCAACAAGCCGGCGTTTGCCGCTTCTGAAGATTATCATCACTTTGTCGTGACGGACAAAGCTTCTGCGAGTGGTGGCAATGATGATGATAAGGACAATGGCGAGATGCTGCAAGTCAACAGATTTCCAGGAAAGAGAAAAGCTGAAACAGAAGAGGATCATGAAATAGAGTCAAATGAATGGCCAACGAGTCAAGGATA
TGCAGAGGCAGTTAATAGTCCCATACTTACACCTGTTTCAGGCACAAGCAGTAGGCGATATAACCGGTCAAAGCTTGCTAAGAGTATGAGAACTGGTCCTCAGACACCTGGGTCAAATATTGGTTCTCCTTCTAGTAATGTGCACACTCCTGTCAGTACCTGTCGCTATGACAGCTCTCTTGGATTATTGACAAAGAAGT
TCATTAGTTTGATCAAGCAAGCAGATGATGGGGTTCTTGATCTCAACAAAGCTGCAGATACTTTAGATGTCCAAAAAAGAAGAATTTATGACATAACAAACGTTCTTGAGGGGATTGGCTTGATTGAGAAGAAACTGAAGAATAGAATACGTTGGAAGGGCCTTGGGGTTTCAAGACCAGGAGAAGTTGACGATGAAGTT
GCGTCCTTGCAGGTTGAAGTTGAAAATTTATATGTTGAAGAGCGCAGAGTAGATGAAAGCATAAGAGAAATGCGGGAGAGATTAAGAATCCTTAGTGAGGATGAGAATAATCAAAAGTGGCTTTATGTTACTGAGGAAGACATCAAGAGCCTACCCTGCTTTCAGCATGATACTCTTATAGCAATTAAGGCTCCTCATGG
AACCACTCTGGAAGTTCCAGACCCGGATGAGGCTGTTGAATACCCTCAAAGACGTTATCAAATTCTGTTGCGCAGTACCATGGGACCGATTGATGTTTATCTTGTAAGTCAATTTGAGGAGAAGTTTGAGGAGATGAATACAGCTGATGTTCCAATGGAGCCTGCCTCATCTACACCTTGCCCTGCAGAAAATCCATCTA
TTCCTATGGTCCAAGAAGTTGCGGCTTCAGCTGAGATGGAGCAACAAGATCATGACATTCAGTGTTCAGATCTAGGTAGTGCTCAAGACTTTGTTGGTGGAATCATGAGGATAGTTCCAGCAGATGTCAATACTGATGCTGATTACTGGCTTCTATCGGACCCTGGGGTTGGCATCACAGACATGTGGAGAACTGAACCA
AATGCTCTATGGGATGAAGTTGGCAAACTCAATCCTTCTGAGTTTGGTCTTGGTGAGGAGGGTTCTCCACAACCCCAAACTCCTCCATTCACTACTGTTGAAGTCACACCTCCAACTCAGGGTTAGCATATCAATTTCCAGAGTCGGTATTCCAGTCAAGCAGAGTGGAGCTTGCTGAATCCATATTTTGGGTCAGCTAG
TTGCAACTTGTAAAATAACTCTGAAGCTGTTGTGACATCGCTCATCATTTCCAGGGTCGTTATGTTGACAACAGCATCATAGCCATTGTGCCAATAATGGGAATTTCTTTTCTATTCCCCAAGTAGATCCAAAAGGATCCATCATTATGCAATCTTAGCAGGGCCACCAACAGCAATGTATGAGGCTGTTATTAGAAAAC
ATATATAAAGTTGTTCATAGATGCAGAGCCTACATGATATAAGCATTGTTAGAAGGGGGAGCAATCAGGCTTTGGAATCGTTGAAGCCTTCTGCAAATTTAAGTTGTGCTTCTTTATTGATTCATTTCCTGTCTAGTTGTATAGCCAATATCTCAAGCCTAACTTGAGTAAAGGATCAGATGTTCAATGAGCCTGGTTAG
GAGCCAAGGGAAAGGGCGGATTCCATTAAAGTTGATAGTACACTGCAAGTATTTCTTATTTCTTCCATAGAGGTTATGAAATCTCAATCTTGAATTCCAGAGTAATCTTTGCTGAATGCTACGAAGAATTTTTGACTGCTTAGCGATGTAATGTGCATATCAGAAAGTGTTGTTTGGAGTTGTTTTTCCATCAGTAGCTG
TAATCATAGATTCCTGAACACAAGGTTGCATAGCATGTGTATCTCATACCAATTGTAGGTTTAGACTTGAATCCACCTCAATCTTTTATATTTTATTTGTGTTGCACCGAGAGTAGCAAGGTGCTCTACAACCCAGTATGAGGGATATGTTATCACATAACGTAATGTAATGTTACATTAACAAAAAATAAAGGGAAATT
AAAAAAAATCATTTCGGCTCTTAAATAAAAAATTATGAAAAGTAATTAAAAAAATCGATGTGGGCCTATAAAATAAAAATTTAAAACTTAAATTAGAATCTATCAAGCAAGAGAGGGATAAAATTTCTTGAGTTTAAAATTAAAAAACAATACATCTCAAGAAATTGGATCCCTCTTGGTGCTTGATATATCTGGGTTTA
AGATGGATCTAATGCTGGTTTCAGCAATGCTAGAGGCCAAATTTTCTCATGATATTTGAACAAACATTTAAATTTAGGTTGTGGTTAATGCCTGTAGTCCCTGTTATTCTCATGGAAGATATTCTACAAATGAAAGTATTATTGGTGATGATTCAATTGTAGTGAAACCGGTGTCACAAGGTTCAAAAAAATCCATCCAA
TCCCATTTGTGGCCTTTTCACAAGTATAG
>TRINITY_DN45292_c3_g1_i1 from sample A8 / Example unspliced isoform:AAGAAAAGAAAAGGCGCGACGATACATTCGAACACAGGAATCAAAACACCAAACTAGTAATAACTTCGTCCTTCCTCCTAAATTCCTTGTTAATAATAATAATAATATTTATTTTTATTCTTCACTCCCTCCCTTGTTCCCTCCATATTTATCCATCCGAACTCAATTCCGCCCTCTCCCTCCAATTTTTTTTTTTTCTC
TTTTACTGATTCGCAATTTCCTTTCTGCTCCTCATCGGATCCCATATCTCCCCTGCAACGCCACACCCTCTTTTCCCAACACCAACACCAGCTCGGTCGCCCACTGTTACAGTCTAATCCAATCCCTTGTCAATATCCACTCCACTAATTGGGGTGGTTTACGGTCTCTTCTGCATTTGTTATGCCCTTTCCCTTTTCCC
TTTCCCTCCCCGAGGTGAGGTCAGATATCACCAACGGCGCTAGCAGTTCCAGTACGCTCGCGGATCCACTTTTTACCGCGTTCCGGTCGAGTATAATCTAGCGGATTTACCTCCAATTCTATCCCAgtaaggtttcataatttttccccttttttctttgggcgggcgggatgccaaagttggcgggttgcagagatgga
agccccgcataaataaaaataaaaataaaaactaaaatctgcctggatagttgtaattttcttttcaattagaaataacaagagaataatagttaaaaatgtctggagGAAGAGCTGGGAATCGATTCCAGCAGCCAGCAGGGCCGTTGATCCAGCCCCTGAAACGGCACAGTGCCTTTACATCCAACAAGCCGGCGTTT
GCCGCTTCTGAAGATTATCATCACTTTGTCGTGACGGACAAAGCTTCTGCGAGTGGTGGCAATGATGATGATAAGGACAATGGCGAGATGCTGCAAGTCAACAGATTTCCAGGAAAGAGAAAAGCTGAAACAGAAGAGGATCATGAAATAGAGTCAAATGAATGGCCAACGAGTCAAGGATATGCAGAGGCAGTTAATAG
TCCCATACTTACACCTGTTTCAGGCACAAGCAGTAGGCGATATAACCGGTCAAAGCTTGCTAAGAGTATGAGAACTGGTCCTCAGACACCTGGGTCAAATATTGGTTCTCCTTCTAGTAATGTGCACACTCCTGTCAGTACCTGTCGCTATGACAGCTCTCTTGGATTATTGACAAAGAAGTTCATTAGTTTGATCAAGC
AAGCAGATGATGGGGTTCTTGATCTCAACAAAGCTGCAGATACTTTAGATGTCCAAAAAAGAAGAATTTATGACATAACAAACGTTCTTGAGGGGATTGGCTTGATTGAGAAGAAACTGAAGAATAGAATACGTTGGAAGGGCCTTGGGGTTTCAAGACCAGGAGAAGTTGACGATGAAGTTGCGTCCTTGCAGGTTGAA
GTTGAAAATTTATATGTTGAAGAGCGCAGAGTAGATGAAAGCATAAGAGAAATGCGGGAGAGATTAAGAATCCTTAGTGAGGATGAGAATAATCAAAAGTGGCTTTATGTTACTGAGGAAGACATCAAGAGCCTACCCTGCTTTCAGCATGATACTCTTATAGCAATTAAGGCTCCTCATGGAACCACTCTGGAAGTTCC
AGACCCGGATGAGGCTGTTGAATACCCTCAAAGACGTTATCAAATTCTGTTGCGCAGTACCATGGGACCGATTGATGTTTATCTTGTAAGTCAATTTGAGGAGAAGTTTGAGGAGATGAATACAGCTGATGTTCCAATGGAGCCTGCCTCATCTACACCTTGCCCTGCAGAAAATCCATCTATTCCTATGGTCCAAGAAG
TTGCGGCTTCAGCTGAGATGGAGCAACAAGATCATGACATTCAGTGTTCAGATCTAGGTAGTGCTCAAGACTTTGTTGGTGGAATCATGAGGATAGTTCCAGCAGATGTCAATACTGATGCTGATTACTGGCTTCTATCGGACCCTGGGGTTGGCATCACAGACATGTGGAGAACTGAACCAAATGCTCTATGGGATGAA
GTTGGCAAACTCAATCCTTCTGAGTTTGGTCTTGGTGAGGAGGGTTCTCCACAACCCCAAACTCCTCCATTCACTACTGTTGAAGTCACACCTCCAACTCAGGGTTAGCATATCAATTTCCAGAGTCGGTATTCCAGTCAAGCAGAGTGGAGCTTGCTGAATCCATATTTTGGGTCAGCTAGTTGCAACTTGTAAAATAA
CTCTGAAGCTGTTGTGACATCGCTCATCATTTCCAGGGTCGTTATGTTGACAACAGCATCATAGCCATTGTGCCAATAATGGGAATTTCTTTTCTATTCCCCAAGTAGATCCAAAAGGATCCATCATTATGCAATCTTAGCAGGGCCACCAACAGCAATGTATGAGGCTGTTATTAGAAAACATATATAAAGTTGTTCAT
AGATGCAGAGCCTACATGATATAAGCATTGTTAGAAGGGGGAGCAATCAGGCTTTGGAATCGTTGAAGCCTTCTGCAAATTTAAGTTGTGCTTCTTTATTGATTCATTTCCTGTCTAGTTGTATAGCCAATATCTCAAGCCTAACTTGAGTAAAGGATCAGATGTTCAATGAGCCTGGTTAGGAGCCAAGGGAAAGGGCG
GATTCCATTAAAGTTGATAGTACACTGCAAGTATTTCTTATTTCTTCCATAGAGGTTATGAAATCTCAATCTTGAATTCCAGAGTAATCTTTGCTGAATGCTACGAAGAATTTTTGACTGCTTAGCGATGTAATGTGCATATCAGAAAGTGTTGTTTGGAGTTGTTTTTCCATCAGTAGCTGTAATCATAGATTCCTGAA
CACAAGGTTGCATAGCATGTGTATCTCATACCAATTGTAGGTTTAGACTTGAATCCACCTCAATCTTTTATATTTTATTTGTGTTGCACCGAGAGTAGCAAGGTGCTCTACAACCCAGTATGAGGGATATGTTATCACATAACGTAATGTAATGTTACATTAACAAAAAATAAAGGGAAATTAAAAAAAATCATTTCGGC
TCTTAAATAAAAAATTATGAAAAGTAATTAAAAAAATCGATGTGGGCCTATAAAATAAAAATTTAAAACTTAAATTAGAATCTATCAAGCAAGAGAGGGATAAAATTTCTTGAGTTTAAAATTAAAAAACAATACATCTCAAGAAATTGGATCCCTCTTGGTGCTTGATATATCTGGGTTTAAGATGGATCTAATGCTGG
TTTCAGCAATGCTAGAGGCCAAATTTTCTCATGATATTTGAACAAACATTTAAATTTAGGTTGTGGTTAATGCCTGTAGTCCCTGTTATTCTCATGGAAGATATTCTACAAATGAAAGTATTATTGGTGATGATTCAATTGTAGTGAAACCGGTGTCACAAGGTTCAAAAAAATCCATCCAATCCCATTTGTGGCCTTTT
CACAAGTATAG
Intron 2 GTATCCTTGA ... CTCTTAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.14 | 22 | 4 | 10 |
| A2 | 20.75 | 21 | 3 | 8 |
| A3 | 17.65 | 14 | 1 | 5 |
| A4 | 14.89 | 20 | 4 | 3 |
| A5 | 20 | 4 | 0 | 2 |
| A6 | 17.73 | 58 | 7 | 18 |
| A7 | 12.31 | 57 | 2 | 14 |
| A8 | 20.93 | 68 | 6 | 30 |
| A9 | 23.93 | 62 | 15 | 24 |
| A10 | 21.95 | 64 | 10 | 26 |
>TRINITY_DN42463_c1_g1_i2 from sample A9 / Example spliced isoformTATTTATCCATCCGAACTCAATTCCGCCCTCTCCCTCCAATTTTTTTTTTTTCTCTTTTACTGATTCGCAATTTCCTTTCTGCTCCTCATCGGATCCCATATCTCCCCTGCAACGCCACACCCTCTTTTCCCAACACCAACACCAGCTCGGTCGCCCACTGTTACAGTCTAATCCAATCCCTTGTCAATATCCACTCCAC
TAATTGGGGTGGTTTACGGTCTCTTCTGCATTTGTTATGCCCTTTCCCTTTTCCCTTTCCCTCCCCGAGGTGAGGTCAGATATCACCAACGGCGCTAGCAGTTCCAGTACGCTCGCGGATCCACTTTTTACCGCGTTCCGGTCGAGTATAATCTAGCGGATTTACCTCCAATTCTATCCCAGTAAGGTTTCATAATTTTT
CCCCTTTTTTCTTTGGGCGGGCGGGATGCCAAAGTTGGCGGGTTGCAGAGATGGAAGCCCCGCATAAATAAAAATAAAAATAAAAACTAAAATCTGCCTGGATAGTTGTAATTTTCTTTTCAATTAGAAATAACAAGAGAATAATAGTTAAAAATGTCTGGAGGAAGAGCTGGGAATCGATTCCAGCAGCCAGCAGGGCC
GTTGATCCAGCCCCTGAAACGGCACAGTGCCTTTACATCCAACAAGCCGGCGTTTGCCGCTTCTGAAGATTATCATCACTTTGTCGTGACGGACAAAGCTTCTGCGAGTGGTGGCAATGATGATGATAAGGACAATGGCGAGATGCTGCAAGTCAACAGATTTCCAGGAAAGAGAAAAGCTGAAACAGAAGAGGATCATG
AAATAGAGTCAAATGAATGGCCAACGAGTCAAGGATATGCAGAGGCAGTTAATAGTCCCATACTTACACCTGTTTCAGGCACAAGCAGTAGGCGATATAACCGGTCAAAGCTTGCTAAGAGTATGAGAACTGGTCCTCAGACACCTGGGTCAAATATTGAATTTTCAACTTGCCTTGGGATTCTATTTGGATTCAGAATA
TATGATACAAATTATTGCTGTATACCATCAGGATTATTGACAAAGAAGTTCATTAGTTTGATCAAGCAAGCAGATGATGGGGTTCTTGATCTCAACAAAGCTGCAGATACTTTAGATGTCCAAAAAAGAAGAATTTATGACATAACAAACGTTCTTGAGGGGATTGGCTTGATTGAGAAGAAACTGAAGAATAGAATACG
TTGGAAGGGCCTTGGGGTTTCAAGACCAGGAGAAGTTGACGATGAAGTTGCGTCCTTGCAGGTTGAAGTTGAAAATTTATATGTTGAAGAGCGCAGAGTAGATGAAAGCATAAGAGAAATGCGGGAGAGATTAAGAATCCTTAGTGAGGATGAGAATAATCAAAAGTGGCTTTATGTTACTGAGGAAGACATCAAGAGCC
TACCCTGCTTTCAGCATGATACTCTTATAGCAATTAAGGCTCCTCATGGAACCACTCTGGAAGTTCCAGACCCGGATGAGGCTGTTGAATACCCTCAAAGACGTTATCAAATTCTGTTGCGCAGTACCATGGGACCGATTGATGTTTATCTTGTAAGTCAATTTGAGGAGAAGTTTGAGGAGATGAATACAGCTGATGTT
CCAATGGAGCCTGCCTCATCTACACCTTGCCCTGCAGAAAATCCATCTATTCCTATGGTCCAAGAAGTTGCGGCTTCAGCTGAGATGGAGCAACAAGATCATGACATTCAGTGTTCAGATCTAGGTAGTGCTCAAGACTTTGTTGGTGGAATCATGAGGATAGTTCCAGCAGATGTCAATACTGATGCTGATTACTGGCT
TCTATCGGACCCTGGGGTTGGCATCACAGACATGTGGAGAACTGAACCAAATGCTCTATGGGATGAAGTTGGCAAACTCAATCCTTCTGAGTTTGGTCTTGGTGAGGAGGGTTCTCCACAACCCCAAACTCCTCCATTCACTACTGTTGAAGTCACACCTCCAACTCAGGGTTAGCATATCAATTTCCAGAGTCGGTATT
CCAGTCAAGCAGAGTGGAGCTTGCTGAATCCATATTTTGGGTCAGCTAGTTGCAACTTGTAAAATAACTCTGAAGCTGTTGTGACATCGCTCATCATTTCCAGGGTCGTTATGTTGACAACAGCATCATAGCCATTGTGCCAATAATGGGAATTTCTTTTCTATTCCCCAAGTAGATCCAAAAGGATCCATCATTATGCA
ATCTTAGCAGGGCCACCAACAGCAATGTATGAGGCTGTTATTAGAAAACATATATAAAGTTGTTCATAGATGCAGAGCCTACATGATATAAGCATTGTTAGAAGGGGGAGCAATCAGGCTTTGGAATCGTTGAAGCCTTCTGCAAATTTAAGTTGTGCTTCTTTATTGATTCATTTCCTGTCTAGTTGTATAGCCAATAT
CTCAAGCCTAACTTGAGTAAAGGATCAGATGTTCAATGAGCCTGGTTAGGAGCCAAGGGAAAGGGCGGATTCCATTAAAGTTGATAGTACACTGCAAGTATTTCTTATTTCTTCCATAGAGGTTATGAAATCTCAATCTTGAATTCCAGAGTAATCTTTGCTGAATGCTACGAAGAATTTTTGACTGCTTAGCGATGTAA
TGTGCATATCAGAAAGTGTTGTTTGGAGTTGTTTTTCCATCAGTAGCTGTAATCATAGATTCCTGAACACAAGGTTGCATAGCATGTGTATCTCATACCAATTGTAGGTTTAGACTTGAATCCACCTCAATCTTTTATATTTTATTTGTGTTGCACCGAGAGTAGCAAGGTGCTCTACAACCCAGTATGAGGGATATGTT
ATCACATAACGTAATGTAATGTTACAAAAATAAAAAAGTAATTAAAAATATCCATGTCGGCTCATAAAATAAAAAATTAAAACCAAATTAAAAGTAATTAAAAAAATCCATGTCCGCTCATAAAATAAAAAATTAAAACCAAATGAAAAATAATTAAAAAAGTCCATGTCGGCTCATAAAAAAAAATACAACAAGCATAG
ATCCATCTTAAACTCGGATATATCAAGCACCAAGAGGGATCTAATTTCTGGAGGTTTAATTTTTTTGGATGTGGAAAAATTTAAGTTAAAAAAAATTTACACGTCAAGAA
>TRINITY_DN42463_c1_g1_i1 from sample A9 / Example unspliced isoform:TATTTATCCATCCGAACTCAATTCCGCCCTCTCCCTCCAATTTTTTTTTTTTCTCTTTTACTGATTCGCAATTTCCTTTCTGCTCCTCATCGGATCCCATATCTCCCCTGCAACGCCACACCCTCTTTTCCCAACACCAACACCAGCTCGGTCGCCCACTGTTACAGTCTAATCCAATCCCTTGTCAATATCCACTCCAC
TAATTGGGGTGGTTTACGGTCTCTTCTGCATTTGTTATGCCCTTTCCCTTTTCCCTTTCCCTCCCCGAGGTGAGGTCAGATATCACCAACGGCGCTAGCAGTTCCAGTACGCTCGCGGATCCACTTTTTACCGCGTTCCGGTCGAGTATAATCTAGCGGATTTACCTCCAATTCTATCCCAGTAAGGTTTCATAATTTTT
CCCCTTTTTTCTTTGGGCGGGCGGGATGCCAAAGTTGGCGGGTTGCAGAGATGGAAGCCCCGCATAAATAAAAATAAAAATAAAAACTAAAATCTGCCTGGATAGTTGTAATTTTCTTTTCAATTAGAAATAACAAGAGAATAATAGTTAAAAATGTCTGGAGGAAGAGCTGGGAATCGATTCCAGCAGCCAGCAGGGCC
GTTGATCCAGCCCCTGAAACGGCACAGTGCCTTTACATCCAACAAGCCGGCGTTTGCCGCTTCTGAAGATTATCATCACTTTGTCGTGACGGACAAAGCTTCTGCGAGTGGTGGCAATGATGATGATAAGGACAATGGCGAGATGCTGCAAGTCAACAGATTTCCAGGAAAGAGAAAAGCTGAAACAGAAGAGGATCATG
AAATAGAGTCAAATGAATGGCCAACGAGTCAAGGATATGCAGAGGCAGTTAATAGTCCCATACTTACACCTGTTTCAGGCACAAGCAGTAGGCGATATAACCGGTCAAAGCTTGCTAAGAGTATGAGAACTGGTCCTCAGACACCTGGGTCAAATATTGGTTCTCCTTCTAGTAATGTGCACACTCCTGTCAGTACCTGT
CGCTATGACAGCTCTCTTGGATTATTGACAAAGAAGTTCATTAGTTTGATCAAGCAAGCAGATGATGGGGTTCTTGATCTCAACAAAGCTGCAGATACTTTAGATGTCCAAAAAAGAAGAATTTATGACATAACAAACGTTCTTGAGGGGATTGGCTTGATTGAGAAGAAACTGAAGAATAGAATACGTTGGAAGGGCCT
TGGGGTTTCAAGACCAGGAGAAGTTGACGATGAAGTTGCGTCCTTGCAGGTTGAAGTTGAAAATTTATATGTTGAAGAGCGCAGAGTAGATGAAAGCATAAGAGAAATGCGGGAGAGATTAAGAATCCTTAGTGAGGATGAGAATAATCAAAAGTGGCTTTATGTTACTGAGGAAGACATCAAGAGCCTACCCTGCTTTC
AGCATGATACTCTTATAGCAATTAAGGCTCCTCATGGAACCACTCTGGAAGTTCCAGACCCGGATGAGGCTGTTGAATACCCTCAAAGACGTTATCAAATTCTGTTGCGCAGTACCATGGGACCGATTGATGTTTATCTTGTAAGTCAATTTGAGGAGAAGTTTGAGGAGATGAATACAGCTGATGTTCCAATGGAGCCT
GCCTCATCTACACCTTGCCCTGCAGAAAATCCATCTATTCCTATGGTCCAAGAAGTTGCGGCTTCAGCTGAGATGGAGCAACAAGATCATGACATTCAGTGTTCAGATCTAGGTAGTGCTCAAGACTTTGTTGGTGGAATCATGAGGATAGTTCCAGCAGATGTCAATACTGATGCTGATTACTGGCTTCTATCGGACCC
TGGGGTTGGCATCACAGACATGTGGAGAACTGAACgtatccttgacatatgcttaatactcatcgctttccttccatttaatgcattcttgcatcttagacactgttccttgactcttaaaagCAAATGCTCTATGGGATGAAGTTGGCAAACTCAATCCTTCTGAGTTTGGTCTTGGTGAGGAGGGTTCTCCACAACCC
CAAACTCCTCCATTCACTACTGTTGAAGTCACACCTCCAACTCAGGGTTAGCATATCAATTTCCAGAGTCGGTATTCCAGTCAAGCAGAGTGGAGCTTGCTGAATCCATATTTTGGGTCAGCTAGTTGCAACTTGTAAAATAACTCTGAAGCTGTTGTGACATCGCTCATCATTTCCAGGGTCGTTATGTTGACAACAGC
ATCATAGCCATTGTGCCAATAATGGGAATTTCTTTTCTATTCCCCAAGTAGATCCAAAAGGATCCATCATTATGCAATCTTAGCAGGGCCACCAACAGCAATGTATGAGGCTGTTATTAGAAAACATATATAAAGTTGTTCATAGATGCAGAGCCTACATGATATAAGCATTGTTAGAAGGGGGAGCAATCAGGCTTTGG
AATCGTTGAAGCCTTCTGCAAATTTAAGTTGTGCTTCTTTATTGATTCATTTCCTGTCTAGTTGTATAGCCAATATCTCAAGCCTAACTTGAGTAAAGGATCAGATGTTCAATGAGCCTGGTTAGGAGCCAAGGGAAAGGGCGGATTCCATTAAAGTTGATAGTACACTGCAAGTATTTCTTATTTCTTCCATAGAGGTT
ATGAAATCTCAATCTTGAATTCCAGAGTAATCTTTGCTGAATGCTACGAAGAATTTTTGACTGCTTAGCGATGTAATGTGCATATCAGAAAGTGTTGTTTGGAGTTGTTTTTCCATCAGTAGCTGTAATCATAGATTCCTGAACACAAGGTTGCATAGCATGTGTATCTCATACCAATTGTAGGTTTAGACTTGAATCCA
CCTCAATCTTTTATATTTTATTTGTGTTGCACCGAGAGTAGCAAGGTGCTCTACAACCCAGTATGAGGGATATGTTATCACATAACGTAATGTAATGTTACAAAAATAAAAAAGTAATTAAAAATATCCATGTCGGCTCATAAAATAAAAAATTAAAACCAAATTAAAAGTAATTAAAAAAATCCATGTCCGCTCATAAA
ATAAAAAATTAAAACCAAATGAAAAATAATTAAAAAAGTCCATGTCGGCTCATAAAAAAAAATACAACAAGCATAGATCCATCTTAAACTCGGATATATCAAGCACCAAGAGGGATCTAATTTCTGGAGGTTTAATTTTTTTGGATGTGGAAAAATTTAAGTTAAAAAAAATTTACACGTCAAGAA
Intron 3 GTAAGGTTTC ... CTGGAGGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 76.92 | 3 | 1 | 19 |
| A2 | 72.73 | 3 | 6 | 10 |
| A3 | 56.86 | 11 | 12 | 17 |
| A4 | 77.27 | 5 | 8 | 26 |
| A5 | 66.67 | 2 | 3 | 5 |
| A6 | 72.09 | 6 | 12 | 19 |
| A7 | 69.57 | 14 | 18 | 46 |
| A8 | 71.43 | 5 | 9 | 16 |
| A9 | 76.47 | 8 | 18 | 34 |
| A10 | 78.57 | 6 | 18 | 26 |
>TRINITY_DN39296_c0_g1_i1 from sample A7 / Example spliced isoformGAAGAAAAGAAAAGGCGCGACGATACATTCGAACACAGGAATCAAAACACCAAACTAGTAATAACTTCGTCCTTCCTCCTAAATTCCTTGTTAATAATAATAATAATATTTATTTTTATTCTTCACTCCCTCCCTTGTTCCCTCCATATTTATCCATCCGAACTCAATTCCGCCCTCTCCCTCCAATTTTTTTTTTTTCT
CTTTTACTGATTCGCAATTTCCTTTCTGCTCCTCATCGGATCCCATATCTCCCCTGCAACGCCACACCCTCTTTTCCCAACACCAACACCAGCTCGGTCGCCCACTGTTACAGTCTAATCCAATCCCTTGTCAATATCCACTCCACTAATTGGGGTGGTTTACGGTCTCTTCTGCATTTGTTATGCCCTTTCCCTTTTCC
CTTTCCCTCCCCGAGGTGAGGTCAGATATCACCAACGGCGCTAGCAGTTCCAGTACGCTCGCGGATCCACTTTTTACCGCGTTCCGGTCGAGTATAATCTAGCGGATTTACCTCCAATTCTATCCCAAGCTGGGAATCGATTCCAGCAGCCAGCAGGGCCGTTGATCCAGCCCCTGAAACGGCACAGTGCCTTTACATCC
AACAAGCCGGCGTTTGCCGCTTCTGAAGATTATCATCACTTTGTCGTGACGGACAAAGCTTCTGCGAGTGGTGGCAATGATGATGATAAGGACAATGGCGAGATGCTGCAAGTCAACAGATTTCCAGGAAAGAGAAAAGCTGAAACAGAAGAGGATCATGAAATAGAGTCAAATGAATGGCCAACGAGTCAAGGATATGC
AGAGGCAGTTAATAGTCCCATACTTACACCTGTTTCAGGCACAAGCAGTAGGCGATATAACCGGTCAAAGCTTGCTAAGAGTATGAGAACTGGTCCTCAGACACCTGGGTCAAATATTGGTTCTCCTTCTAGTAATGTGCACACTCCTGTCAGTACCTGTCGCTATGACAGCTCTCTTGGATTATTGACAAAGAAGTTCA
TTAGTTTGATCAAGCAAGCAGATGATGGGGTTCTTGATCTCAACAAAGCTGCAGATACTTTAGATGTCCAAAAAAGAAGAATTTATGACATAACAAACGTTCTTGAGGGGATTGGCTTGATTGAGAAGAAACTGAAGAATAGAATACGTTGGAAGGGCCTTGGGGTTTCAAGACCAGGAGAAGTTGACGATGAAGTTGCG
TCCTTGCAGGTTGAAGTTGAAAATTTATATGTTGAAGAGCGCAGAGTAGATGAAAGCATAAGAGAAATGCGGGAGAGATTAAGAATCCTTAGTGAGGATGAGAATAATCAAAAGTGGCTTTATGTTACTGAGGAAGACATCAAGAGCCTACCCTGCTTTCAGCATGATACTCTTATAGCAATTAAGGCTCCTCATGGAAC
CACTCTGGAAGTTCCAGACCCGGATGAGGCTGTTGAATACCCTCAAAGACGTTATCAAATTCTGTTGCGCAGTACCATGGGACCGATTGATGTTTATCTTGTAAGTCAATTTGAGGAGAAGTTTGAGGAGATGAATACAGCTGATGTTCCAATGGAGCCTGCCTCATCTACACCTTGCCCTGCAGAAAATCCATCTATTC
CTATGGTCCAAGAAGTTGCGGCTTCAGCTGAGATGGAGCAACAAGATCATGACATTCAGTGTTCAGATCTAGGTAGTGCTCAAGACTTTGTTGGTGGAATCATGAGGATAGTTCCAGCAGATGTCAATACTGATGCTGATTACTGGCTTCTATCGGACCCTGGGGTTGGCATCACAGACATGTGGAGAACTGAACCAAAT
GCTCTATGGGATGAAGTTGGCAAACTCAATCCTTCTGAGTTTGGTCTTGGTGAGGAGGGTTCTCCACAACCCCAAACTCCTCCATTCACTACTGTTGAAGTCACACCTCCAACTCAGGGTTAGCATATCAATTTCCAGAGTCGGTATTCCAGTCAAGCAGAGTGGAGCTTGCTGAATCCATATTTTGGGTCAGCTAGTTG
CAACTTGTAAAATAACTCTGAAGCTGTTGTGACATCGCTCATCATTTCCAGGGTCGTTATGTTGACAACAGCATCATAGCCATTGTGCCAATAATGGGAATTTCTTTTCTATTCCCCAAGTAGATCCAAAAGGATCCATCATTATGCAATCTTAGCAGGGCCACCAACAGCAATGTATGAGGCTGTTATTAGAAAACATA
TATAAAGTTGTTCATAGATGCAGAGCCTACATGATATAAGCATTGTTAGAAGGGGGAGCAATCAGGCTTTGGAATCGTTGAAGCCTTCTGCAAATTTAAGTTGTGCTTCTTTATTGATTCATTTCCTGTCTAGTTGTATAGCCAATATCTCAAGCCTAACTTGAGTAAAGGATCAGATGTTCAATGAGCCTGGTTAGGAG
CCAAGGGAAAGGGCGGATTCCATTAAAGTTGATAGTACACTGCAAGTATTTCTTATTTCTTCCATAGAGGTTATGAAATCTCAATCTTGAATTCCAGAGTAATCTTTGCTGAATGCTACGAAGAATTTTTGACTGCTTAGCGATGTAATGTGCATATCAGAAAGTGTTGTTTGGAGTTGTTTTTCCATCAGTAGCTGTAA
TCATAGATTCCTGAACACAAGGTTGCATAGCATGTGTATCTCATACCAATTGTAGGTTTAGACTTGAATCCACCTCAATCTTTTATATTTTATTTGTGTTGCACCGAGAGTAGCAAGGTGCTCTACAACCCAGTATGAGGG
>TRINITY_DN39296_c0_g1_i2 from sample A7 / Example unspliced isoform:GAAGAAAAGAAAAGGCGCGACGATACATTCGAACACAGGAATCAAAACACCAAACTAGTAATAACTTCGTCCTTCCTCCTAAATTCCTTGTTAATAATAATAATAATATTTATTTTTATTCTTCACTCCCTCCCTTGTTCCCTCCATATTTATCCATCCGAACTCAATTCCGCCCTCTCCCTCCAATTTTTTTTTTTTCT
CTTTTACTGATTCGCAATTTCCTTTCTGCTCCTCATCGGATCCCATATCTCCCCTGCAACGCCACACCCTCTTTTCCCAACACCAACACCAGCTCGGTCGCCCACTGTTACAGTCTAATCCAATCCCTTGTCAATATCCACTCCACTAATTGGGGTGGTTTACGGTCTCTTCTGCATTTGTTATGCCCTTTCCCTTTTCC
CTTTCCCTCCCCGAGGTGAGGTCAGATATCACCAACGGCGCTAGCAGTTCCAGTACGCTCGCGGATCCACTTTTTACCGCGTTCCGGTCGAGTATAATCTAGCGGATTTACCTCCAATTCTATCCCAgtaaggtttcataatttttccccttttttctttgggcgggcgggatgccaaagttggcgggttgcagagatgg
aagccccgcataaataaaaataaaaataaaaactaaaatctgcctggatagttgtaattttcttttcaattagaaataacaagagaataatagttaaaaatgtctggaggaagAGCTGGGAATCGATTCCAGCAGCCAGCAGGGCCGTTGATCCAGCCCCTGAAACGGCACAGTGCCTTTACATCCAACAAGCCGGCGTT
TGCCGCTTCTGAAGATTATCATCACTTTGTCGTGACGGACAAAGCTTCTGCGAGTGGTGGCAATGATGATGATAAGGACAATGGCGAGATGCTGCAAGTCAACAGATTTCCAGGAAAGAGAAAAGCTGAAACAGAAGAGGATCATGAAATAGAGTCAAATGAATGGCCAACGAGTCAAGGATATGCAGAGGCAGTTAATA
GTCCCATACTTACACCTGTTTCAGGCACAAGCAGTAGGCGATATAACCGGTCAAAGCTTGCTAAGAGTATGAGAACTGGTCCTCAGACACCTGGGTCAAATATTGGTTCTCCTTCTAGTAATGTGCACACTCCTGTCAGTACCTGTCGCTATGACAGCTCTCTTGGATTATTGACAAAGAAGTTCATTAGTTTGATCAAG
CAAGCAGATGATGGGGTTCTTGATCTCAACAAAGCTGCAGATACTTTAGATGTCCAAAAAAGAAGAATTTATGACATAACAAACGTTCTTGAGGGGATTGGCTTGATTGAGAAGAAACTGAAGAATAGAATACGTTGGAAGGGCCTTGGGGTTTCAAGACCAGGAGAAGTTGACGATGAAGTTGCGTCCTTGCAGGTTGA
AGTTGAAAATTTATATGTTGAAGAGCGCAGAGTAGATGAAAGCATAAGAGAAATGCGGGAGAGATTAAGAATCCTTAGTGAGGATGAGAATAATCAAAAGTGGCTTTATGTTACTGAGGAAGACATCAAGAGCCTACCCTGCTTTCAGCATGATACTCTTATAGCAATTAAGGCTCCTCATGGAACCACTCTGGAAGTTC
CAGACCCGGATGAGGCTGTTGAATACCCTCAAAGACGTTATCAAATTCTGTTGCGCAGTACCATGGGACCGATTGATGTTTATCTTGTAAGTCAATTTGAGGAGAAGTTTGAGGAGATGAATACAGCTGATGTTCCAATGGAGCCTGCCTCATCTACACCTTGCCCTGCAGAAAATCCATCTATTCCTATGGTCCAAGAA
GTTGCGGCTTCAGCTGAGATGGAGCAACAAGATCATGACATTCAGTGTTCAGATCTAGGTAGTGCTCAAGACTTTGTTGGTGGAATCATGAGGATAGTTCCAGCAGATGTCAATACTGATGCTGATTACTGGCTTCTATCGGACCCTGGGGTTGGCATCACAGACATGTGGAGAACTGAACCAAATGCTCTATGGGATGA
AGTTGGCAAACTCAATCCTTCTGAGTTTGGTCTTGGTGAGGAGGGTTCTCCACAACCCCAAACTCCTCCATTCACTACTGTTGAAGTCACACCTCCAACTCAGGGTTAGCATATCAATTTCCAGAGTCGGTATTCCAGTCAAGCAGAGTGGAGCTTGCTGAATCCATATTTTGGGTCAGCTAGTTGCAACTTGTAAAATA
ACTCTGAAGCTGTTGTGACATCGCTCATCATTTCCAGGGTCGTTATGTTGACAACAGCATCATAGCCATTGTGCCAATAATGGGAATTTCTTTTCTATTCCCCAAGTAGATCCAAAAGGATCCATCATTATGCAATCTTAGCAGGGCCACCAACAGCAATGTATGAGGCTGTTATTAGAAAACATATATAAAGTTGTTCA
TAGATGCAGAGCCTACATGATATAAGCATTGTTAGAAGGGGGAGCAATCAGGCTTTGGAATCGTTGAAGCCTTCTGCAAATTTAAGTTGTGCTTCTTTATTGATTCATTTCCTGTCTAGTTGTATAGCCAATATCTCAAGCCTAACTTGAGTAAAGGATCAGATGTTCAATGAGCCTGGTTAGGAGCCAAGGGAAAGGGC
GGATTCCATTAAAGTTGATAGTACACTGCAAGTATTTCTTATTTCTTCCATAGAGGTTATGAAATCTCAATCTTGAATTCCAGAGTAATCTTTGCTGAATGCTACGAAGAATTTTTGACTGCTTAGCGATGTAATGTGCATATCAGAAAGTGTTGTTTGGAGTTGTTTTTCCATCAGTAGCTGTAATCATAGATTCCTGA
ACACAAGGTTGCATAGCATGTGTATCTCATACCAATTGTAGGTTTAGACTTGAATCCACCTCAATCTTTTATATTTTATTTGTGTTGCACCGAGAGTAGCAAGGTGCTCTACAACCCAGTATGAGGG