NA ----> NA
Intron 1 GTCTTGGTTA ... ATAAATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 100 | 0 | 1 | 2 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 58.33 | 5 | 9 | 5 |
| A8 | 63.64 | 2 | 4 | 3 |
| A9 | 70.59 | 5 | 16 | 8 |
| A10 | 100 | 0 | 7 | 8 |
>TRINITY_DN44203_c0_g1_i3 from sample A9 / Example spliced isoformCAGAGAATATAAGAGAGCGAACACACTCAATTTCATACAATCCTTCTATTCTGCAGAGCTGCATTAGCTTCCCTTTTGTTCCGCTGCTTCATGCATCTTCGGATTTTACGGTCCATTTTTTGGGTTTTGCATTTTGTTTTGTTTTTCATTTTCGCCTGTGTTTGCGTTATTTGCATGGACCATTTTATTTTGTTCCACGA
TGTAGAGTAGAAAAAGAAAGATGGGGTGAGATGAAACCAGTGGATTTTGGGTTTTATATGAAGTTACCCAGTGGAGACTGGAGTGGATGAATGTAAATATTCAAGGAATATATATTCAGATAGTACAACATTCCGCCTCAAAGCAAACCATCTGTCGTGCAATGTCAGGAAATGGTGGCTCGTACAGCATTCCGCCTCAT
TCTCTCATACGTTCGGTCATTTTTAATTTCTTAGTTAGTTAAACCACTAACTCCGTAGAGGGTACAGTTAATTGCTTAAAATAAAATATTACCTAGAAATCTGTCCGCCAAAATTTCAGTAAAAGATTTAGATGATTGTAGAAGGAAGGTTAACTTTGTGAGATGTGTTAATATTACATTTCATGTTCCTGTTATTTTTC
TCCCCTGGTGATTTCATTTGGATGCAGGATGTACAACAGAGGATGGAAGATAGATGAGTAGAGATGAAACCCATTGGAGAGTAGGAGCAGGCATGCTTTCACCTAGAGCCATAAGAGATGTTTCGTGGTTCCTATTCATACGAGAGATTTGCCTTTTTTAATTACTGTGTCGATTTCAGACTCAAATTGCAGGAAATCGC
AAGAGCTTTTATTATTTCGATTTCAGACTGAACGGCGTTACGGCATTGCAACCGGAACGGTTATTCGCTCGTTTGCTTTTAATATCTTGAACAGCTCTTTTTAATGATTTTTTCTATGCAACAGGTTAATTCTGCACTGCAAAAGGAGATGAGGGTTTTGTTGTTGATCATTTACGTAATTTCTGAATGGTCGCAAACCC
ATGGTTATCTTTCTCAGGCGGTGTTTGCTGCACTGGGGGAGATAAGACGACCTGCAGAATAGGACCAGACCTTCTTCGTCTCCAATAATAATGGTCGCAGACCCATGCTTATCTTTGTGAGGCGGTGTTTGCTGCATTGGGGAGATAAAGACGACTTGCAGAATACGACGAGTCTTTCTCCACCTCCAAAATTGCTAAAA
GAAGACGAGGGTTTTGCTGCTCATCATTTACATAATCTCAGAATGGCCACAGACCCCAATGCTTCTCTTTTTCAACCATACTGAGGCGGTGTTTGCTGCAGTGGGAAGATGAGGTGACCCGCAGAATATGACTGGCTTTTCTAAGCGTCCAATCATGTAAATATACGTTTTGTCACTCAGTGTTTTTTCTATTGTTTTAC
AGAAGAAAGTTAAGGTTACTCTACAGTTGTACAGTTGTTCTACAGAAGAAAGTTGAGGTTACCCTGCTGTTGTTCTTGGATGTCCAGTTATTTGTAGATGATAAAAATTGAGGTTACTCTGCTGTTGTTCTTGGATGTCCAGTTAAGTTTTTCTATTGTTCTGGGATGTCAAGTTATTTGTAGATGATAAGGTTGGATTT
CTTACTCCTGTCATAGATGTTTGGGGATCGACCTTATGATCGTGTCCTCCAACCCTTCTTCTCTACATTCCATAGTCACGAAAACATTGTCGCGACTTTGTGGTCGTGATCCTGCCCTGTGTAAGAGTTTGGATTATGTGGTGAACGTTTCTATTAGTGTGAGGATATTTAAATGCAATACAAAATCCCCAAACCTACTG
GCCTGCAAATTCGGCCTTGCCCCTATTTTGCTTCCATACATGTAGCTATTGATTATCCACACAGGTAAGAATCCATTACAGACAGGAGCATTCAAAGTGTTTGAATGTGATGTAGAGTGTTCAAAAAAGATTATCAACTTGAAAATGGGTTTGGATTATGGGACTTTTACATCATTCGAG
>TRINITY_DN44203_c0_g1_i1 from sample A9 / Example unspliced isoform:CAGAGAATATAAGAGAGCGAACACACTCAATTTCATACAATCCTTCTATTCTGCAGAGCTGCATTAGCTTCCCTTTTGTTCCGCTGCTTCATGCATCTTCGGATTTTACGGTCCATTTTTTGGGTTTTGCATTTTGTTTTGTTTTTCATTTTCGCCTGTGTTTGCGTTATTTGCATGGACCATTTTATTTTGTTCCACGA
TGTAGAGTAGAAAAAGAAAGATGGGGTGAGATGAAACCAGTGGATTTTGGGTTTTATATGAAGTTACCCAGTGGAGACTGGAGTGGATGAATGTAAATATTCAAGGAATATATATTCAGATAGTACAACATTCCGCCTCAAAGCAAACCATCTGTCGTGCAATGTCAGGAAATGGTGGCTCGTACAGCATTCCGCCTCAT
TCTCTCATACGTTCGGTCATTTTTAATTTCTTAGTTAGTTAAACCACTAACTCCGTAGAGGGTACAGTTAATTGCTTAAAATAAAATATTACCTAGAAATCTGTCCGCCAAAATTTCAGTAAAAGATTTAGATGATTGTAGAAGGAAGGTTAACTTTGTGAGATGTGTTAATATTACATTTCATGTTCCTGTTATTTTTC
TCCCCTGGTGATTTCATTTGGATGCAGGATGTACAACAGAGGATGGAAGATAGATGAGTAGAGATGAAACCCATTGGAGAGTAGGAGCAGGCATGCTTTCACCTAGAGCCATAAGAGATGTTTCGTGGTTCCTATTCATACGAGAGATTTGCCTTTTTTAATTACTGTGTCGATTTCAGACTCAAATTGCAGGAAATCGC
AAGAGCTTTTATTATTTCGATTTCAGACTGAACGGCGTTACGGCATTGCAACCGGAACGGTTATTCGCTCGTTTGCTTTTAATATCTTGAACAGCTCTTTTTAATGATTTTTTCTATGCAACAGGTTAATTCTGCACTGCAAAAGGAGATGAGGGTTTTGTTGTTGATCATTTACATAATTTCTGAATGGTCGCAAACCC
ATGGTTATCTTTCTCAGGCGGTGTTTGCTGCACTGGGGGAGATAAGACGACCTGCAGAATACGACCAGATCTTGTTCGTCTCCAATAATgtcttggttaattttttgtaatgaattttgctctgcaaaaagagatgagggttttgatgctgatcatttatataaattcagAATGGTCGCAGACCCATGCTTATCTTTGTG
AGGCGGTGTTTGCTGCATTGGGGAGATAAAGACGACTTGCAGAATACGACGAGTCTTTCTCCACCTCCAAAATTGCTAAAAGAAGACGAGGGTTTTGCTGCTCATCATTTACATAATCTCAGAATGGCCACAGACCCCAATGCTTCTCTTTTTCAACCATACTGAGGCGGTGTTTGCTGCAGTGGGAAGATGAGGTGACC
CGCAGAATATGACTGGCTTTTCTAAGCGTCCAATCATGTAAATATACGTTTTGTCACTCAGTGTTTTTTCTATTGTTTTACAGAAGAAAGTTAAGGTTACTCTACAGTTGTACAGTTGTTCTACAGAAGAAAGTTGAGGTTACCCTGCTGTTGTTCTTGGATGTCCAGTTATTTGTAGATGATAAAAATTGAGGTTACTC
TGCTGTTGTTCTTGGATGTCCAGTTAAGTTTTTCTATTGTTCTGGGATGTCAAGTTATTTGTAGATGATAAGGTTGGATTTCTTACTCCTGTCATAGATGTTTGGGGATCGACCTTATGATCGTGTCCTCCAACCCTTCTTCTCTACATTCCATAGTCACGAAAACATTGTCGCGACTTTGTGGTCGTGATCCTGCCCTG
TGTAAGAGTTTGGATTATGTGGTGAACGTTTCTATTAGTGTGAGGATATTTAAATGCAATACAAAATCCCCAAACCTACTGGCCTGCAAATTCGGCCTTGCCCCTATTTTGCTTCCATACATGTAGCTATTGATTATCCACACAGGTAAGAATCCATTACAGACAGGAGCATTCAAAGTGTTTGAATGTGATGTAGAGTG
TTCAAAAAAGATTATCAACTTGAAAATGGGTTTGGATTATGGGACTTTTACATCATTCGAG
Intron 2 GTAAGTACAC ... TCTGCAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 0 | 4 | 0 | 0 |
| A7 | 10.34 | 13 | 2 | 1 |
| A8 | 7.69 | 6 | 1 | 0 |
| A9 | 28.57 | 10 | 5 | 3 |
| A10 | 18.18 | 9 | 3 | 1 |
>TRINITY_DN44203_c0_g1_i2 from sample A9 / Example spliced isoformCAGAGAATATAAGAGAGCGAACACACTCAATTTCATACAATCCTTCTATTCTGCAGAGCTGCATTAGCTTCCCTTTTGTTCCGCTGCTTCATGCATCTTCGGATTTTACGGTCCATTTTTTGGGTTTTGCATTTTGTTTTGTTTTTCATTTTCGCCAGTGTTTGCATTATTTGCATGGACCATTTTATTTTGTTCCACGA
TGTAGAGTAGAAAAAGAAAGACGGGTTGAGATGAAACCAGTGGATTTTGGGTTTTATATGAAGTTACCCAGTGGAGACTGGAGTGGATGAATGTAAATATTCAAGTGAATATATATTCAGATAGTACAACATTCCGCCTCAAAGCAAACCATCTGTCGTGCAATGTCAGGAAATGGTGGCTCGTACAGCATTCCGCCTCA
TTCTCTCATACGTTCGGTCATTTTTAATTTCTTAGTTAGTTAAACCACTAACTCCGTAGAGGATACAGTTACTTGCTTAAAATAGAATATTACCTAGAAATCTGCCCGCCAAAATTTCACTAAAAGATTTAGATGATTGTAGAAGGAAGGTTAACTTTGTGAGATGTGTTAATATTACATTTCATGTTCCTGTTATTTTT
CTCCCCTGGTGATTTCATTTGGATGCAGGATGTACAACAGAGGATGGAAGATAGATGAGTAGAGATGAAACCCATTGGAGCGTAGGAGCAGGTTAATTCTGCACTGCAAAAGGAGATGAGGGTTTTGTTGTTGATCATTTACATAATTTCTGAATGGTCGCAAACCCATGGTTATCTTTCTCAGGCGGTGTTTGCTGCAC
TGGGGGAGATAAGACGACCTGCAGAATACGACCAGACCTTCTTCGTCTCCAATAATGTCTTGGTTAATTTTTTGTAATGAATTTTGCTCTGCAAAGGGAGACGAGGGTTTTGGTGCTGATCATTTATATAGATTCAGAATGGTCGCAGACCCATGCTTATCTTTGTGAGGCGGTGTTTGCTGCATTGGGGAGATAAAGAT
GACTTACAGAATACGACGAGTCTTTCTTCACCTCCAAAATTGCTAAAAGAAGACGAGGGTTTTGCTGCTCATCATTTACATAATCTCAGAATGGCCACAGACCCCAATGCTTCTCTTTTTCAACCATACTGAGGCGGTGTTTGCTGCAGTGGGAAGATGAGGTGACCTGCAGAATATGACCGGTTTTTCTAAGCGTCCAA
TCATGTAAATATACGTTTTGTCATACTCAGTGTTTTTTCTATTGTTTTACAGAAGAAAGTTAAGGTTACTCTACAGTTGTTCTACAGAAGAAAGTTGAGGTTACCCTGCTGTTGTTCTTGGATGTCCAGTTATTTGTAGATGATAAAAATTGAGGTTACTCTGCTGTTGTTCTTGGATGTCCAGTTAAGTTTTTCTATTG
TTCTGGGATGTCAAGTTATTTGTAGATGATAAGGTTGGATTTCTTACTCCTGTCATAGATGTTTGGGGATCGACCTTATGATCGTGTCCTCCAACCCTTCTTCTCTACATTCCATAGTCACGAAAACATTGTCGCGACTTTGTGGTCGTGATCCTGCCCTGTGTAAGAGTTTGGATTATGTGGTGAACGTTTCTATTAGT
GTGAGGATATTTAAATGCAATACAAAATCCCCAAACCTACTGGCCTGCAAATTCGGCCTTGCCCCTATTTTGCTTCCATACATGTAGCTATTGATTATCCACACAGGTAAGAATCCATTACAGACAGGAGCATTCAAAGTGTTTGAATGTGATGTAGAGTGTTCAAAAAAGATTATCAACTTGAAAATGGGTTTGGATTA
TGGGACTTTTACATCATTCGAG
>TRINITY_DN44203_c0_g1_i4 from sample A9 / Example unspliced isoform:CAGAGAATATAAGAGAGCGAACACACTCAATTTCATACAATCCTTCTATTCTGCAGAGCTGCATTAGCTTCCCTTTTGTTCCGCTGCTTCATGCATCTTCGGATTTTACGGTCCATTTTTTGGGTTTTGCATTTTGTTTTGTTTTTCATTTTCGCCAGTGTTTGCATTATTTGCATGGACCATTTTATTTTGTTCCACGA
TGTAGAGTAGAAAAAGAAAGACGGGTTGAGATGAAACCAGTGGATTTTGGGTTTTATATGAAGTTACCCAGTGGAGACTGGAGTGGATGAATGTAAATATTCAAGTGAATATATATTCAGATAGTACAACATTCCGCCTCAAAGCAAACCATCTGTCGTGCAATGTCAGGAAATGGTGGCTCGTACAGCATTCCGCCTCA
TTCTCTCATACGTTCGGTCATTTTTAATTTCTTAGTTAGTTAAACCACTAACTCCGTAGAGGATACAGTTACTTGCTTAAAATAGAATATTACCTAGAAATCTGCCCGCCAAAATTTCACTAAAAGATTTAGATGATTGTAGAAGGAAGGTTAACTTTGTGAGATGTGTTAATATTACATTTCATGTTCCTGTTATTTTT
CTCCCCTGGTGATTTCATTTGGATGCAGGATGTACAACAGAGGATGGAAGATAGATGAGTAGAGATGAAACCCATTGGAGCGTAGGAGCAGGTTAATTCTGCACTGCAAAAGGAGATGAGGGTTTTGTTGTTGATCATTTACATAATTTCTGAATGGTCGCAAACCCATGGTTATCTTTCTCAGGCGGTGTTTGCTGCAC
TGGGGGAGATAAGACGACCTGCAGAATACGACCAGACCTTCTTCGTCTCCAATAATGTCTTGGTTAATTTTTTGTAATGAATTTTGCTCTGCAAAGGGAGACGAGGGTTTTGGTGCTGATCATTTATATAGATTCAGAATGGTCGCAGACCCATGCTTATCTTTGTGAGGCGGTGTTTGCTGCATTGGGGAGATAAAGAT
GACTTACAGAATACGACGAGTCTTTCTTCACCTCCAAAATTgtaagtacactcgcgacatattcttttaattaatgaatttgcccggttaatttttaatgaattatgctctgcaatagGCTAAAAGAAGACGAGGGTTTTGATGCTGATCATTT
Intron 3 GTAAGTACAC ... TTTGCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 38.46 | 4 | 0 | 5 |
| A7 | 83.33 | 1 | 2 | 8 |
| A8 | 57.14 | 3 | 1 | 7 |
| A9 | 81.25 | 3 | 10 | 16 |
| A10 | 46.67 | 4 | 3 | 4 |
>TRINITY_DN45941_c0_g1_i6 from sample A7 / Example spliced isoformATTTTTTCTATGCAACAGGTTAATTCTGCACTGCAAAAGGAGATGAGGGTTTTGTTGTTGATCATTTACATAAATTCTGAATGGTCGCAAACCCATGGTTATCTTTCTCAGGCGGTGTTTGCTGCACTGGGGGAGATAAGACGACCTGCAGAATAGGACCAGACCTTCTTCGTCTCCAATAATGTCTTGGTTAATTTTTT
GTAATGAATTTTGCTCTGCAAAGGGAGACGAGGGTTTTGGTGCTGATCATTTATATAGATTCAGAATGGTCGCAGACCCATGCTTATCTTTGTGAGGCGGTGTTTGCTGCATTGGGGAGATAAAGATGACTTACAGAATACGACGAGTCTTTCTTCACCTCCAAAATTTGGGAAGATGAGGTGACCTGCAGAATATGACC
GGTTTTTCTAAGCGTCCAATCATGTAAATATACGTTTTGTCACTCAGTGTTTTTTCTATTGTTTTACAGAAGAAAGTTAAGGTTACTCTACAGTTGTACAGTTGTTCTACAGAAGAAAGTTGAGGTTACCCTGCTGTTGTTCTTGGATGTCCAGTTATTTGTAGATGATAAAAATTGAGGTTACTCTGCTGTTGTTCTTG
GATGTCCAGTTAAGTTTTTCTATTGTTCTGGGATGTCAAGTTATTTGTAGATGATAAGGTTGGATTTCTTACTCCTGTCATAGATGTTTGGGGATCGACCTTATGATCGTGTCCTCCAACCCTTCTTCTCTACATTCCATACTAACGAAAACATTGTCGCGACTTTGTGGTCGTGATCCTGCCCTGTGTAAGAGTTTGGA
TTATGTGGTGAACGTTTCTATTAGTGTGAGGATATTTAAATGCAATACAAAATCCCCAAACCTACTGGCCTGCAAATTCGGCCTTGCCCCTATTTTGCTTCCATACATGTAGCTATTGATTATCCACACAGTTAAGAATCCATTACAGACAGGAGCATTCAAAGTGTTTGAATGTGATATAGAGTGTTCAAAAAGGATTA
TCAACTTGAAAAGGGTTTGGAATATAGGACTTTT
>TRINITY_DN45941_c0_g1_i2 from sample A7 / Example unspliced isoform:ATTTTTTCTATGCAACAGGTTAATTCTGCACTGCAAAAGGAGATGAGGGTTTTGTTGTTGATCATTTACATAAATTCTGAATGGTCGCAAACCCATGGTTATCTTTCTCAGGCGGTGTTTGCTGCACTGGGGGAGATAAGACGACCTGCAGAATAGGACCAGACCTTCTTCGTCTCCAATAATGTCTTGGTTAATTTTTT
GTAATGAATTTTGCTCTGCAAAGGGAGACGAGGGTTTTGGTGCTGATCATTTATATAGATTCAGAATGGTCGCAGACCCATGCTTATCTTTGTGAGGCGGTGTTTGCTGCATTGGGGAGATAAAGATGACTTACAGAATACGACGAGTCTTTCTTCACCTCCAAAATTgtaagtacactcgcgacatattcttttaatta
atgaatttgcccggttaatttttaatgaattatgctctgcaataggctaaaagaagacgagagttttgctgctcatcatttatataatctcagaatggccacagaccccaatgcttctctttttcaaccatactgaggcggtgtttgctgcagTGGGAAGATGAGGTGACCTGCAGAATATGACCGGTTTTTCTAAGCGT
CCAATCATGTAAATATACGTTTTGTCACTCAGTGTTTTTTCTATTGTTTTACAGAAGAAAGTTAAGGTTACTCTACAGTTGTACAGTTGTTCTACAGAAGAAAGTTGAGGTTACCCTGCTGTTGTTCTTGGATGTCCAGTTATTTGTAGATGATAAAAATTGAGGTTACTCTGCTGTTGTTCTTGGATGTCCAGTTAAGT
TTTTCTATTGTTCTGGGATGTCAAGTTATTTGTAGATGATAAGGTTGGATTTCTTACTCCTGTCATAGATGTTTGGGGATCGACCTTATGATCGTGTCCTCCAACCCTTCTTCTCTACATTCCATACTAACGAAAACATTGTCGCGACTTTGTGGTCGTGATCCTGCCCTGTGTAAGAGTTTGGATTATGTGGTGAACGT
TTCTATTAGTGTGAGGATATTTAAATGCAATACAAAATCCCCAAACCTACTGGCCTGCAAATTCGGCCTTGCCCCTATTTTGCTTCCATACATGTAGCTATTGATTATCCACACAGTTAAGAATCCATTACAGACAGGAGCATTCAAAGTGTTTGAATGTGATATAGAGTGTTCAAAAAGGATTATCAACTTGAAAAGGG
TTTGGAATATAGGACTTTT