NA ----> NA
Intron 1 GTGAAATGTG ... ATCATGCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.23 | 4 | 0 | 9 |
| A2 | 91.67 | 1 | 0 | 11 |
| A3 | 75 | 2 | 10 | 6 |
| A4 | 83.33 | 1 | 0 | 5 |
| A5 | 61.54 | 5 | 0 | 8 |
| A6 | 75 | 2 | 0 | 6 |
| A7 | 77.78 | 2 | 0 | 7 |
| A8 | 87.5 | 2 | 2 | 14 |
| A9 | 83.33 | 3 | 0 | 15 |
| A10 | 88.24 | 2 | 0 | 15 |
>TRINITY_DN43674_c0_g1_i4 from sample A8 / Example spliced isoformAAATTTGTAAGGCAAACGCGTATGACGTCTGGAAGAGAGAGGACAAATTCCTCATTACATCGTCTTCGTCAATTATAAAGGTATATTTTCACGAGGTACTGGTGGATCTCAGGATTCATTGCAGAAGTCAGGACAAACAGTTCAAGTGTCTGTGCAAGATTTTGCTAGTCATGCTGGAAATAATGGATCAGGGCAACTGG
TATTGGACCAACTGTTGGTGCCTTCTTCCTATTCGGGCCGGGGAAATCACACAATTACAGCTTTTCAGTCAGATGCATCCAACTGAAGTCTATTATAATTCTTTGTTTTACCGTTTGTTTGCTGATGATCTTGTTGAGCAAGAGCCAGTGCTATCTCTTCTGACCTATATTTTACATTTCTTTGGTATGGAGACTAGCAT
TAATCTAATTGGAACATGAAAGAGGACATTTCAAAATGTAATAGAGATAATGATATAGAGACATATATCAGGAGTGGGAGATTGCTATCATACATACAGATGATTAGGCTGTTGTTTCAGTCATTAGCGGTCCATTTTTGCATTGCATCCAAAGCTGACTCTCTTCAGAATCTATCAAAGTGTTCGGAAAATAAAAGGAC
AAGAAGATGGAAGAGAAATAACCTTTTGGGCCTGATCAGCATCTTCATTTGTTGAG
>TRINITY_DN43674_c0_g1_i2 from sample A8 / Example unspliced isoform:AAATTTGTAAGGCAAACGCGTATGACGTCTGGAAGAGAGAGGACAAATTCCTCATTACATCGTCTTCGTCAATTATAAAGgtgaaatgtgacagaaagctttcctgggtaggaatcctatgtcgcccggggtttggggggtaatagaattactcatttaggtgtaaaaaattataacccaagtccttccttgaccacgaa
atggtacagaagcatcatgaggttttgatggccccaagaagcacaggctggtcttccgacatatgctcaaacccaagctgttacttcattttattcttgaaaatcaaatagctcccaccttgtaggaatctgtgccatcccacctgctaagctcagctaaagcttgttttagccaggaagatacatgcaatggttaattg
tagagtaggacaaatcaggcatgaacattcttccaaatatttagcagttctcacatgggcccaaaacccatttgacacatcaaacccaagtacattcatgaatagataatgttgggtgtaatgagataagaggactacttggaagttgggtgccaacatggagtatggaagacagatgcccacatgaatttacctctttt
tctgagcattacaggggctgcaaggctcattctggactgtcatccagaggtaagtgacatgctcatttactgaacttaatgagattccattgctatggattagtaggaaagaagtttttgctttagtttcagaaatgtagtaattcctttaggtttattgctgtaatgcaaatggatgagttggagaacttcaagccaca
gaaacaattagcacaaattatgtctctggattccaatgcatctgcacagcaaaacacgccaattttgtattcagatgtagatgtgtctgtttgcaaagtagaaagaagcaattatggagcagacaatggatatgatttggaaagtggtattcaggtcactaaaccagaggttccttttgccaaaaatttgtttggaagag
ttgggtatagtgggttacgcataattcagaacgttaagagttcagtaggtgcacatttagggaacaatgtcattcaatgtggctctgtccaaggggaagaatctgagatgagattttcatttcatcacaatacattgaaggattcagttgttcctgtcgttgcaaaacagtctcaagatattggtttagcaaaggcacta
gatatagataagattagacatggtaatggcaagactaccttgaaaccaagttggaaaaaacctccaaggcctcccagcagagcagcgatgaatgccttaagagaaagggatatgaagggcatttctgatacagcttttcttagaagagcaaagctgcaaagaatgagatccatgagaaaacacaaatttgcgaagccttc
ttcagtgaaaacaggtttctgggccctgttggtcacaatttccttctgcattatcatgatcatgcaagGTATATTTTCACGAGGTACTGGTGGATCTCAGGATTCATTGCAGAAGTCAGGACAAACAGTTCAAGTGTCTGTGCAAGATTTTGCTAGTCATGCTGGAAATAATGGATCAGGGCAACTGGTATTGGACCAAC
TGTTGGTGCCTTCTTCCTATTCGGGCCGGGGAAATCACACAATTACAGCTTTTCAGTCAGATGCATCCAACTGAAGTCTATTATAATTCTTTGTTTTACCGTTTGTTTGCTGATGATCTTGTTGAGCAAGAGCCAGTGCTATCTCTTCTGACCTATATTTTACATTTCTTTGGTATGGAGACTAGCATTAATCTAATTGG
AACATGAAAGAGGACATTTCAAAATGTAATAGAGATAATGATATAGAGACATATATCAGGAGTGGGAGATTGCTATCATACATACAGATGATTAGGCTGTTGTTTCAGTCATTAGCGGTCCATTTTTGCATTGCATCCAAAGCTGACTCTCTTCAGAATCTATCAAAGTGTTCGGAAAATAAAAGGACAAGAAGATGGAA
GAGAAATAACCTTTTGGGCCTGATCAGCATCTTCATTTGTTGAGAATCAAGACTCAATATATTTGTATTTGAAACGTGTTTGAAACCAAGTGAAAGTTTTGCTTACTCA
Intron 2 GTAAGTGACA ... ATTCCTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.64 | 10 | 18 | 17 |
| A2 | 100 | 0 | 2 | 1 |
| A3 | 52.94 | 8 | 9 | 9 |
| A4 | 100 | 0 | 12 | 10 |
| A5 | 56.25 | 7 | 12 | 6 |
| A6 | 50 | 3 | 3 | 3 |
| A7 | 73.68 | 5 | 15 | 13 |
| A8 | 60 | 4 | 7 | 5 |
| A9 | 59.09 | 9 | 17 | 9 |
| A10 | 57.58 | 14 | 23 | 15 |
>TRINITY_DN46286_c0_g1_i1 from sample A7 / Example spliced isoformAGAGCCATAACTAAAGGGCCCACAAAGGTATAATATGGTCAGAGTTAGTACCGAAGTGACCAGAGAAGATAACTCATAAATTTGTAAGGCAAACGCGTATGACGTCTGGAAGAGAGAGGACAAATTCCTCATTACATCGTCTTCGTCAATTATAAAGGTGAAATGTGACAGAAAGCTTTCCTGGGTAGGAATCCTATGTC
GCCCGGGGTTTGGGGGGTAATAGAATTACTCATTTAGGTGTAAAAAATTATAACCCAAGTCCTTCCTTGACCACGAAATGGTACAGAAGCATCATGAGGTTTTGATGGCCCCAAGAAGCACAGGCTGGTCTTCCGACATATGCTCAAACCCAAGCTGTTACTTCATTTTATTCTTGAAAATCAAATAGCTCCCACCTTGT
AGGAATCTGTGCCATCCCACCTGCTAAGCTCATCTAAAGCTTGTTTTAGCCAGGAGGATACATGCAATGGTTAATTGTAGAGTAGGACAAATCAGGCATGAACATTCTTCCAAATATTTAGCAGTTCTCACATGGGCCCAAAACCCATTTGACACATCAAACCCAAGTACATTCATGAATAGATAATGTTGGGTGTAATG
AGATAAGAGGACTACTTGGAAGTTGGGTGCCAACATGGAGTATGGAAGACAGATGCCCACATGAATTTACCTCTTTTTCTGAGCATTACAGGGGCTGCAAGGCTCATTCTGGACTGTCATCCAGAGGTTTATTGCTGTAATGCAAATGGATGAGTTGGAGAACTTCAAGCCACAGAAACAATTAGCACAAATTATGTCTC
TGGATTCCAATGCATCTGCACAGCAAAACACGCCAATTTTGTATTCAGATGTAGATGTGTCTGTTTGCAAAGTAGAAAGAAGCAATTATGGAGCAGACAATGGATATGATTTGGAAAGTGGTATTCAGGTCACTAAACCAGAGGTTCCTTTTGCCAAAAATTTGTTTGGAAGAGTTGGGTATAGTGGGTTACGCATAATT
CAGAACGTTAAGAGTTCAGTAGGTGCACATTTAGGGAACAATGTCATTCAATGTGGCTCTGTCCAAGGGGAAGAATCTGAGATGAGATTTTCATTTCATCACAATACATTGAAGGATTCAGTTGTTCCTGTCGTTGCAAAACAGTCTCAAGATATTGGTTTAGCAAAGGCACTAGATATAGATAAGATTAGACATGGTAA
TGGCAAGACTACCTTGAAACCAAGTTGGAAAAAACCTCCAAGGCCTCCCAGCAGAGCAGCGATGAATGCCTTAAGAGAAAGGGATATGAAGGGCATTTCTGATACAGCTTTTCTTAGAAGAGCAAAGCTGCAAAGAATGAGATCCATGAGAAAACACAAATTTGCGAAGCCTTCTTCAGTGAAAACAGGTTTCTGGGCCC
TGTTGGTCACAATTTCTTTCTGCATTATCATGATCATGCAAGGTATATTTTCACGAGGTACTGGTGGATCTCAGGATTCATTGCAGAAGTCAGGACAAACAGTTCAAGTGTCTGTGCAAGATTTTGCTAGTCATGCTGGAAATAATGGATCAGGGCAACCGGTATTGGACCAACTGTCGGTGCCTTCTTCCTATTCAGGC
CGGGGAAATCACACAATTACAGCTTTTCAGTCAGATGCATCCAACTGAAGTCTATTATAATTCTTTGTTTTACCGATTGTTTGCTGATTGATGATCTTGATGAGCAAGAGCCAGTGCTGTCCCTTCTGACCTATATTTTGCATTTCTTTGGTATAGAGACTAGCATTAATCTAATTGGAACATGAAAGAGGACATTTCAA
AATGTAATAGAGATAATGATATAGAGACATATATCAGGAGTGGGAGATTGCTATCATACATACACATGATTAGGCTATTGTATCAGTCATTAGCGGTCCATTTTTGCATTGCATCCAAAGCTGACTTTCTTCAGAATCTATCAAAGTGTTCGGAAAATAAAAGGACAAGAAGATGGAAGAGAAATAACCTTTTGGGCCTG
ATCAGCATCTTCATTTGTTGAGTTTCAAGACTAAATATATTTGTATTTGAAACCAAGTGAGAAAGTTTTGCTTACTCATGTAAAAAA
>TRINITY_DN46286_c0_g1_i5 from sample A7 / Example unspliced isoform:AGAGCCATAACTAAAGGGCCCACAAAGGTATAATATGGTCAGAGTTAGTACCGAAGTGACCAGAGAAGATAACTCATAAATTTGTAAGGCAAACGCGTATGACGTCTGGAAGAGAGAGGACAAATTCCTCATTACATCGTCTTCGTCAATTATAAAGGTGAAATGTGACAGAAAGCTTTCCTGGGTAGGAATCCTATGTC
GCCCGGGGTTTGGGGGGTAATAGAATTACTCATTTAGGTGTAAAAAATTATAACCCAAGTCCTTCCTTGACCACGAAATGGTACAGAAGCATCATGAGGTTTTGATGGCCCCAAGAAGCACAGGCTGGTCTTCCGACATATGCTCAAACCCAAGCTGTTACTTCATTTTATTCTTGAAAATCAAATAGCTCCCACCTTGT
AGGAATCTGTGCCATCCCACCTGCTAAGCTCATCTAAAGCTTGTTTTAGCCAGGAGGATACATGCAATGGTTAATTGTAGAGTAGGACAAATCAGGCATGAACATTCTTCCAAATATTTAGCAGTTCTCACATGGGCCCAAAACCCATTTGACACATCAAACCCAAGTACATTCATGAATAGATAATGTTGGGTGTAATG
AGATAAGAGGACTACTTGGAAGTTGGGTGCCAACATGGAGTATGGAAGACAGATGCCCACATGAATTTACCTCTTTTTCTGAGCATTACAGGGGCTGCAAGGCTCATTCTGGACTGTCATCCAGAGgtaagtgacatgctcatttactgaacttaatgagattccattgctatggattagtaggaaagaagtttttgctt
tagtttcagaaatgtagtaattcctttagGTTTATTGCTGTAATGCAAATGGATGAGTTGGAGAACTTCAAGCCACAGAAACAATTAGCACAAATTATGTCTCTGGATTCCAATGCATCTGCACAGCAAAACACGCCAATTTTGTATTCAGATGTAGATGTGTCTGTTTGCAAAGTAGAAAGAAGCAATTATGGAGCAGA
CAATGGATATGATTTGGAAAGTGGTATTCAGGTCACTAAACCAGAGGTTCCTTTTGCCAAAAATTTGTTTGGAAGAGTTGGGTATAGTGGGTTACGCATAATTCAGAACGTTAAGAGTTCAGTAGGTGCACATTTAGGGAACAATGTCATTCAATGTGGCTCTGTCCAAGGGGAAGAATCTGAGATGAGATTTTCATTTC
ATCACAATACATTGAAGGATTCAGTTGTTCCTGTCGTTGCAAAACAGTCTCAAGATATTGGTTTAGCAAAGGCACTAGATATAGATAAGATTAGACATGGTAATGGCAAGACTACCTTGAAACCAAGTTGGAAAAAACCTCCAAGGCCTCCCAGCAGAGCAGCGATGAATGCCTTAAGAGAAAGGGATATGAAGGGCATT
TCTGATACAGCTTTTCTTAGAAGAGCAAAGCTGCAAAGAATGAGATCCATGAGAAAACACAAATTTGCGAAGCCTTCTTCAGTGAAAACAGGTTTCTGGGCCCTGTTGGTCACAATTTCTTTCTGCATTATCATGATCATGCAAGGTATATTTTCACGAGGTACTGGTGGATCTCAGGATTCATTGCAGAAGTCAGGACA
AACAGTTCAAGTGTCTGTGCAAGATTTTGCTAGTCATGCTGGAAATAATGGATCAGGGCAACCGGTATTGGACCAACTGTCGGTGCCTTCTTCCTATTCAGGCCGGGGAAATCACACAATTACAGCTTTTCAGTCAGATGCATCCAACTGAAGTCTATTATAATTCTTTGTTTTACCGATTGTTTGCTGATTGATGATCT
TGATGAGCAAGAGCCAGTGCTGTCCCTTCTGACCTATATTTTGCATTTCTTTGGTATAGAGACTAGCATTAATCTAATTGGAACATGAAAGAGGACATTTCAAAATGTAATAGAGATAATGATATAGAGACATATATCAGGAGTGGGAGATTGCTATCATACATACACATGATTAGGCTATTGTATCAGTCATTAGCGGT
CCATTTTTGCATTGCATCCAAAGCTGACTTTCTTCAGAATCTATCAAAGTGTTCGGAAAATAAAAGGACAAGAAGATGGAAGAGAAATAACCTTTTGGGCCTGATCAGCATCTTCATTTGTTGAGAATCAAGACTCAATATATTTGTATTTGAAACGTGTTTGAAACCAAGTGAAAGTTTTGCTTACTCATGTATAATGT
GGAAATTTTGATGACATGAGAGAACAATTATCTGC
Intron 3 GTGAAATGTG ... TCATCCAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.67 | 4 | 0 | 8 |
| A2 | 66.67 | 1 | 0 | 2 |
| A3 | 77.78 | 2 | 10 | 7 |
| A4 | 50 | 1 | 0 | 1 |
| A5 | 70.59 | 5 | 0 | 12 |
| A6 | 60 | 2 | 0 | 3 |
| A7 | 66.67 | 2 | 0 | 4 |
| A8 | 84.62 | 2 | 2 | 11 |
| A9 | 83.33 | 3 | 0 | 15 |
| A10 | 91.3 | 2 | 0 | 21 |
>TRINITY_DN46286_c0_g1_i2 from sample A7 / Example spliced isoformAGAGCCATAACTAAAGGGCCCACAAAGGTATAATATGGTCAGAGTTAGTACCGAAGTGACCAGAGAAGATAACTCATAAATTTGTAAGGCAAACGCGTATGACGTCTGGAAGAGAGAGGACAAATTCCTCATTACATCGTCTTCGTCAATTATAAAGGTATATTTTCACGAGGTACTGGTGGATCTCAGGATTCATTGCA
GAAGTCAGGACAAACAGTTCAAGTGTCTGTGCAAGATTTTGCTAGTCATGCTGGAAATAATGGATCAGGGCAACTGGTATTGGACCAACTGTTGGTGCCTTCTTCCTATTCGGGCCGGGGAAATCACACAATTACAGCTTTTCAGTCAGATGCATCCAACTGAAGTCTATTATAATTCTTTGTTTTACCGTTTGTTTGCT
GATGATCTTGTTGAGCAAGAGCCAGTGCTATCTCTTCTGACCTATATTTTACATTTCTTTGGTATGGAGACTAGCATTAATCTAATTGGAACATGAAAGAGGACATTTCAAAATGTAATAGAGATAATGATATAGAGACATATATCAGGAGTGGGAGATTGCTATCATACATACAGATGATTAGGCTGTTGTTTCAGTCA
TTAGCGGTCCATTTTTGCATTGCATCCAAAGCTGACTTTCTTCAGAATCTATCAAAGTGTTCGGAAAATAAAAGGACAAGAAGATGGAAGAGAAATAACCTTTTGGGCCTGATCAGCATCTTCATTTGTTGAG
>TRINITY_DN46286_c0_g1_i3 from sample A7 / Example unspliced isoform:AGAGCCATAACTAAAGGGCCCACAAAGGTATAATATGGTCAGAGTTAGTACCGAAGTGACCAGAGAAGATAACTCATAAATTTGTAAGGCAAACGCGTATGACGTCTGGAAGAGAGAGGACAAATTCCTCATTACATCGTCTTCGTCAATTATAAAGgtgaaatgtgacagaaagctttcctgggtaggaatcctatgtc
gcccggggtttggggggtaatagaattactcatttaggtgtaaaaaattataacccaagtccttccttgaccacgaaatggtacagaagcatcatgaggttttgatggccccaagaagcacaggctggtcttccgacatatgctcaaacccaagctgttacttcattttattcttgaaaatcaaatagctcccaccttgt
aggaatctgtgccatcccacctgctaagctcatctaaagcttgttttagccaggaggatacatgcaatggttaattgtagagtaggacaaatcaggcatgaacattcttccaaatatttagcagttctcacatgggcccaaaacccatttgacacatcaaacccaagtacattcatgaatagataatgttgggtgtaatg
agataagaggactacttggaagttgggtgccaacatggagtatggaagacagatgcccacatgaatttacctctttttctgagcattacaggggctgcaaggctcattctggactgtcatccagagGTATATTTTCACGAGGTACTGGTGGATCTCAGGATTCATTGCAGAAGTCAGGACAAACAGTTCAAGTGTCTGTG
CAAGATTTTGCTAGTCATGCTGGAAATAATGGATCAGGGCAACTGGTATTGGACCAACTGTTGGTGCCTTCTTCCTATTCGGGCCGGGGAAATCACACAATTACAGCTTTTCAGTCAGATGCATCCAACTGAAGTCTATTATAATTCTTTGTTTTACCGTTTGTTTGCTGATGATCTTGTTGAGCAAGAGCCAGTGCTAT
CTCTTCTGACCTATATTTTACATTTCTTTGGTATGGAGACTAGCATTAATCTAATTGGAACATGAAAGAGGACATTTCAAAATGTAATAGAGATAATGATATAGAGACATATATCAGGAGTGGGAGATTGCTATCATACATACAGATGATTAGGCTGTTGTTTCAGTCATTAGCGGTCCATTTTTGCATTGCATCCAAAG
CTGACTTTCTTCAGAATCTATCAAAGTGTTCGGAAAATAAAAGGACAAGAAGATGGAAGAGAAATAACCTTTTGGGCCTGATCAGCATCTTCATTTGTTGAGAATCAAGACTCAATATATTTGTATTTGAAACGTGTTTGAAACCAAGTGAAAGTTTTGCTTACTCATGTATAATGTGGAAATTTTGATGACATGAGAGA
ACAATTATCTGC
Intron 4 GTTTATTGCT ... ATCATGCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.29 | 8 | 10 | 9 |
| A2 | 73.33 | 2 | 0 | 11 |
| A3 | 50 | 7 | 8 | 6 |
| A4 | 71.43 | 1 | 0 | 5 |
| A5 | 35.14 | 12 | 7 | 6 |
| A6 | 60 | 3 | 3 | 6 |
| A7 | 60 | 4 | 5 | 7 |
| A8 | 45 | 11 | 4 | 14 |
| A9 | 44.44 | 15 | 9 | 15 |
| A10 | 40.85 | 21 | 14 | 15 |
>TRINITY_DN42556_c0_g1_i3 from sample A9 / Example spliced isoformTCGTCTTCGTCAATTATAAAGGTGAAATGTGACAGAAAGCTTTCCTGGGTAGGAATCCTATGTCGCCCGGGGTTTGGGGGGTAATAGAATTACTCATTTAGGTGTAAAAAATTATAACCCAAGTCCTTCCTTGACCACGAAATGGTACAGAAGCATCATGAGGTTTTGATGGCCCCAAGAAGCACAGGCTGGTCTTCCGA
CATATGCTCAAACCCAAGCTGTTACTTCATTTTATTCTTGAAAATCAAATAGCTCCCACCTTGTAGGAATCTGTGCCATCCCACCTGCTAAGCTCATCTAAAGCTTGTTTTAGCCAGGAGGATACATGCAATGGTTAATTGTAGAGTAGGACAAATCAGGCATGAACATTCTTCCAAATATTTAGCAGTTCTCACATGGG
CCCAAAACCCATTTGACACATCAAACCCAAGTACATTCATGAATAGATAATGTTGGGTGTAATGAGATAAGAGGACTACTTGGAAGTTGGGTGCCAACATGGAGTATGGAAGACAGATGCCCACATGAATTTACCTCTTTTTCTGAGCATTACAGGGGCTGCAAGGCTCATTCTGGACTGTCATCCAGAGGTATATTTTC
ACGAGGTACTGGTGGATCTCAGGATTCATTGCAGAAGTCAGGACAAACAGTTCAAGTGTCTGTGCAAGATTTTGCTAGTCATGCTGGAAATAATGGATCAGGGCAACTGGTATTGGACCAACTGTTGGTGCCTTCTTCCTATTCGGGCCGGGGAAATCACACAATTACAGCTTTTCAGTCAGATGCATCCAACTGAAGTC
TATTATAATTCTTTGTTTTACCGTTTGTTTGCTGATGATCTTGTTGAGCAAGAGCCAGTGCTATCTCTTCTGACCTATATTTTACATTTCTTTGGTATGGAGACTAGCATTAATCTAATTGGAACATGAAAGAGGACATTTCAAAATGTAATAGAGATAATGATATAGAGACATATATCAGGAGTGGGAGATTGCTATCA
TACATACA
>TRINITY_DN42556_c0_g1_i4 from sample A9 / Example unspliced isoform:TCGTCTTCGTCAATTATAAAGGTGAAATGTGACAGAAAGCTTTCCTGGGTAGGAATCCTATGTCGCCCGGGGTTTGGGGGGTAATAGAATTACTCATTTAGGTGTAAAAAATTATAACCCAAGTCCTTCCTTGACCACGAAATGGTACAGAAGCATCATGAGGTTTTGATGGCCCCAAGAAGCACAGGCTGGTCTTCCGA
CATATGCTCAAACCCAAGCTGTTACTTCATTTTATTCTTGAAAATCAAATAGCTCCCACCTTGTAGGAATCTGTGCCATCCCACCTGCTAAGCTCATCTAAAGCTTGTTTTAGCCAGGAGGATACATGCAATGGTTAATTGTAGAGTAGGACAAATCAGGCATGAACATTCTTCCAAATATTTAGCAGTTCTCACATGGG
CCCAAAACCCATTTGACACATCAAACCCAAGTACATTCATGAATAGATAATGTTGGGTGTAATGAGATAAGAGGACTACTTGGAAGTTGGGTGCCAACATGGAGTATGGAAGACAGATGCCCACATGAATTTACCTCTTTTTCTGAGCATTACAGGGGCTGCAAGGCTCATTCTGGACTGTCATCCAGAGgtttattgct
gtaatgcaaatggatgagttggagaacctcaagccacagaaacaattagcacaaattatgtctctggattccaatgcatctgtacagcaaaacacgccaattttgtattcagatgtagatatgtctgtttgcaaagtagaaagaagcaattatggagcagacaatggatatgatttggaaagtggtattcaggtcactaa
accagaggttccttttgccaaaaatttgtttggaagagttgggtatagtgggttacgcataattcagaacgttaagagttcagtaggtgcacatttagggaacaatgtcattcaatgtggctctgtccaaggggaagaatctgagatgagattttcatttcatcacaatacattgaaggattcagttgttcctgtcgttg
caaaacagtctcaagatattggtttagcaaaggcactagatatagataagattagacatggtaatggcaagactaccttgaaaccaagttggaaaaaacctccaaggcctcccagcagagcagcgatgaatgccttaagagaaagggatatgaagggcatttctgatacagcttttcttagaagagcaaagctgcaaaga
atgagatccatgagaaaacacaaatttgcgaagccttcttcagtgaaaacaggtttctgggccctgttggtcacaatttctttctgcattatcatgatcatgcaagGTATATTTTCACGAGGTACTGGTGGATCTCAGGATTCATTGCAGAAGTCAGGACAAACAGTTCAAGTGTCTGTGCAAGATTTTGCTAGTCATGC
TGGAAATAATGGATCAGGGCAACTGGTATTGGACCAACTGTTGGTGCCTTCTTCCTATTCGGGCCGGGGAAATCACACAATTACAGCTTTTCAGTCAGATGCATCCAACTGAAGTCTATTATAATTCTTTGTTTTACCGTTTGTTTGCTGATGATCTTGTTGAGCAAGAGCCAGTGCTATCTCTTCTGACCTATATTTTA
CATTTCTTTGGTATGGAGACTAGCATTAATCTAATTGGAACATGAAAGAGGACATTTCAAAATGTAATAGAGATAATGATATAGAGACATATATCAGGAGTGGGAGATTGCTATCATACATACAGATGATTAGGCTGTTGTTTCAGTCATTAGCGGTCCATTTTTGCATTGCATCCAAAGCTGACTCTCTTCAGAATCTA
TCAAAGTGTTCGGAAAATAAAAGGACAAGAAGATGGAAGAGAAATAACCTTTTGGGCCTGATCAGCATCTTCATTTGTTGAGAATCAAGACTCAATATATTTGTATTTGAAACGTGTTTGAAACCAAGTGAAAGTTTTGCTTACTCATGTATAAGGTGGAAATTTTGATGACATGAGAGAACAATTATCTGAATCAATTA
TCTTTTCT
Intron 5 GTAAGTGACA ... ATCATGCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.79 | 8 | 18 | 9 |
| A2 | 76.47 | 2 | 2 | 11 |
| A3 | 51.72 | 7 | 9 | 6 |
| A4 | 89.47 | 1 | 12 | 5 |
| A5 | 43.9 | 12 | 12 | 6.8 |
| A6 | 60 | 3 | 3 | 6 |
| A7 | 73.33 | 4 | 15 | 7 |
| A8 | 48.84 | 11 | 7 | 14 |
| A9 | 51.61 | 15 | 17 | 15 |
| A10 | 47.5 | 21 | 23 | 15 |
>TRINITY_DN46286_c0_g1_i3 from sample A7 / Example spliced isoformAGAGCCATAACTAAAGGGCCCACAAAGGTATAATATGGTCAGAGTTAGTACCGAAGTGACCAGAGAAGATAACTCATAAATTTGTAAGGCAAACGCGTATGACGTCTGGAAGAGAGAGGACAAATTCCTCATTACATCGTCTTCGTCAATTATAAAGGTGAAATGTGACAGAAAGCTTTCCTGGGTAGGAATCCTATGTC
GCCCGGGGTTTGGGGGGTAATAGAATTACTCATTTAGGTGTAAAAAATTATAACCCAAGTCCTTCCTTGACCACGAAATGGTACAGAAGCATCATGAGGTTTTGATGGCCCCAAGAAGCACAGGCTGGTCTTCCGACATATGCTCAAACCCAAGCTGTTACTTCATTTTATTCTTGAAAATCAAATAGCTCCCACCTTGT
AGGAATCTGTGCCATCCCACCTGCTAAGCTCATCTAAAGCTTGTTTTAGCCAGGAGGATACATGCAATGGTTAATTGTAGAGTAGGACAAATCAGGCATGAACATTCTTCCAAATATTTAGCAGTTCTCACATGGGCCCAAAACCCATTTGACACATCAAACCCAAGTACATTCATGAATAGATAATGTTGGGTGTAATG
AGATAAGAGGACTACTTGGAAGTTGGGTGCCAACATGGAGTATGGAAGACAGATGCCCACATGAATTTACCTCTTTTTCTGAGCATTACAGGGGCTGCAAGGCTCATTCTGGACTGTCATCCAGAGGTATATTTTCACGAGGTACTGGTGGATCTCAGGATTCATTGCAGAAGTCAGGACAAACAGTTCAAGTGTCTGTG
CAAGATTTTGCTAGTCATGCTGGAAATAATGGATCAGGGCAACTGGTATTGGACCAACTGTTGGTGCCTTCTTCCTATTCGGGCCGGGGAAATCACACAATTACAGCTTTTCAGTCAGATGCATCCAACTGAAGTCTATTATAATTCTTTGTTTTACCGTTTGTTTGCTGATGATCTTGTTGAGCAAGAGCCAGTGCTAT
CTCTTCTGACCTATATTTTACATTTCTTTGGTATGGAGACTAGCATTAATCTAATTGGAACATGAAAGAGGACATTTCAAAATGTAATAGAGATAATGATATAGAGACATATATCAGGAGTGGGAGATTGCTATCATACATACAGATGATTAGGCTGTTGTTTCAGTCATTAGCGGTCCATTTTTGCATTGCATCCAAAG
CTGACTTTCTTCAGAATCTATCAAAGTGTTCGGAAAATAAAAGGACAAGAAGATGGAAGAGAAATAACCTTTTGGGCCTGATCAGCATCTTCATTTGTTGAGAATCAAGACTCAATATATTTGTATTTGAAACGTGTTTGAAACCAAGTGAAAGTTTTGCTTACTCATGTATAATGTGGAAATTTTGATGACATGAGAGA
ACAATTATCTGC
>TRINITY_DN46286_c0_g1_i5 from sample A7 / Example unspliced isoform:AGAGCCATAACTAAAGGGCCCACAAAGGTATAATATGGTCAGAGTTAGTACCGAAGTGACCAGAGAAGATAACTCATAAATTTGTAAGGCAAACGCGTATGACGTCTGGAAGAGAGAGGACAAATTCCTCATTACATCGTCTTCGTCAATTATAAAGGTGAAATGTGACAGAAAGCTTTCCTGGGTAGGAATCCTATGTC
GCCCGGGGTTTGGGGGGTAATAGAATTACTCATTTAGGTGTAAAAAATTATAACCCAAGTCCTTCCTTGACCACGAAATGGTACAGAAGCATCATGAGGTTTTGATGGCCCCAAGAAGCACAGGCTGGTCTTCCGACATATGCTCAAACCCAAGCTGTTACTTCATTTTATTCTTGAAAATCAAATAGCTCCCACCTTGT
AGGAATCTGTGCCATCCCACCTGCTAAGCTCATCTAAAGCTTGTTTTAGCCAGGAGGATACATGCAATGGTTAATTGTAGAGTAGGACAAATCAGGCATGAACATTCTTCCAAATATTTAGCAGTTCTCACATGGGCCCAAAACCCATTTGACACATCAAACCCAAGTACATTCATGAATAGATAATGTTGGGTGTAATG
AGATAAGAGGACTACTTGGAAGTTGGGTGCCAACATGGAGTATGGAAGACAGATGCCCACATGAATTTACCTCTTTTTCTGAGCATTACAGGGGCTGCAAGGCTCATTCTGGACTGTCATCCAGAGgtaagtgacatgctcatttactgaacttaatgagattccattgctatggattagtaggaaagaagtttttgctt
tagtttcagaaatgtagtaattcctttaggtttattgctgtaatgcaaatggatgagttggagaacttcaagccacagaaacaattagcacaaattatgtctctggattccaatgcatctgcacagcaaaacacgccaattttgtattcagatgtagatgtgtctgtttgcaaagtagaaagaagcaattatggagcaga
caatggatatgatttggaaagtggtattcaggtcactaaaccagaggttccttttgccaaaaatttgtttggaagagttgggtatagtgggttacgcataattcagaacgttaagagttcagtaggtgcacatttagggaacaatgtcattcaatgtggctctgtccaaggggaagaatctgagatgagattttcatttc
atcacaatacattgaaggattcagttgttcctgtcgttgcaaaacagtctcaagatattggtttagcaaaggcactagatatagataagattagacatggtaatggcaagactaccttgaaaccaagttggaaaaaacctccaaggcctcccagcagagcagcgatgaatgccttaagagaaagggatatgaagggcatt
tctgatacagcttttcttagaagagcaaagctgcaaagaatgagatccatgagaaaacacaaatttgcgaagccttcttcagtgaaaacaggtttctgggccctgttggtcacaatttctttctgcattatcatgatcatgcaagGTATATTTTCACGAGGTACTGGTGGATCTCAGGATTCATTGCAGAAGTCAGGACA
AACAGTTCAAGTGTCTGTGCAAGATTTTGCTAGTCATGCTGGAAATAATGGATCAGGGCAACCGGTATTGGACCAACTGTCGGTGCCTTCTTCCTATTCAGGCCGGGGAAATCACACAATTACAGCTTTTCAGTCAGATGCATCCAACTGAAGTCTATTATAATTCTTTGTTTTACCGATTGTTTGCTGATTGATGATCT
TGATGAGCAAGAGCCAGTGCTGTCCCTTCTGACCTATATTTTGCATTTCTTTGGTATAGAGACTAGCATTAATCTAATTGGAACATGAAAGAGGACATTTCAAAATGTAATAGAGATAATGATATAGAGACATATATCAGGAGTGGGAGATTGCTATCATACATACACATGATTAGGCTATTGTATCAGTCATTAGCGGT
CCATTTTTGCATTGCATCCAAAGCTGACTTTCTTCAGAATCTATCAAAGTGTTCGGAAAATAAAAGGACAAGAAGATGGAAGAGAAATAACCTTTTGGGCCTGATCAGCATCTTCATTTGTTGAGAATCAAGACTCAATATATTTGTATTTGAAACGTGTTTGAAACCAAGTGAAAGTTTTGCTTACTCATGTATAATGT
GGAAATTTTGATGACATGAGAGAACAATTATCTGC