sp|Q9ZW95|C7352_ARATH ----> Cytokinin hydroxylase

Intron 1 GTAAGTATCA ... TCTCTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	29.9	34	15	14
A2	30.56	25	11	11
A3	37.7	19	7	16
A4	38.89	22	13	15
A5	66.67	1	2	2
A6	28.85	74	34	26
A7	35.37	74	39	42
A8	32.71	72	43	27
A9	30.53	91	37	43
A10	30.23	45	23	16

>TRINITY_DN115084_c6_g2_i1 from sample A1 / Example spliced isoform

GGCGGGAGAATATTTTGGGGATACATGCAGGAAGCCCTAGATCATAACAAGGGGAAAACGAGATAGCAGCTCCAAGAAACCTGTGCGGAGAAGAGCCACCTGGAAATCCATAGAGAAGAATGAAGGATGAGAACCTGGTAGACGAAGACGTGCTAGTATTCTTTCTGAGAGCAATCGAATGTTGCAGTGGTGAATCCATC
ATTCCTCAACTTGATCCGCTTCATTTTTATATACACCAAAGGCCCATAGTAAAAGAAAAAGGAAATGAAGGGATTCTCCAGGTCACAAGATCGATCCTCGCTTCCTTTTATCGCTTTGTTTTCCCTCTTCCTAATTTAAATGTCTCTCAGGTTTAGTAAGAGCTTTTGAAGAAAAAGGAAATGAAGGGATTCTCCAGGTC
ACAAGATCGATCCTCGCTTCCTTTTATCGATTTGTTTTCCCTCTCCCTAATTTAGATGTCTCTCAGGTTTAGTAAGAGCTTTTGAATGATGTAAATTTGAGGTTTTGTGGTGTGCCCAGTTCATGTATTGATTTGGGCTTTCTAGATTTTGGGATTTTATTTTATTTTGGGGGTTGGGTTTTTTATTTTATTTTGGGGAG
TTTAGGTTATGGATGGATCTCAAAATAACTGGGGCGATGTGGTGACTATATTTCTCACCAAGATATTTGACATGGCGAACTACAATAGACTTGATAGTGACATGGAGTCCCGAGAATGATAGCTTCATTGTCTGCAACCCCTGGAATTTTAACGAGACTTATTGCCTAAGTACTTCAAGCACAACAATTTCTCCAACTTT
GTGAGGAAGCTCAATACATATAGTCTTGGGAGGTGGTATCAATGGTCTTCTATCCACACTATTTTTTGCTGGAATATCCCCTTTTCTACTATATTTCTTCATCAAATACTTTTGGATGCCATGGGCTATCTATGTAGCTATGAAAAAAAAGGTATTCAAAGGTACACCCCCACGTTTTATGGTCAATACTATAATGGATA
TTGCCAACATGATGCAACAAGAGATACGCACAGACATGGCATCTGTAGATCACAATATCAGAAAAAGAGAATTTCCATATTGGGTCGAGTGGTCTAGGAGATACGATACTATATTACTTCAAAAGTAATTTTCATAACAGGCTAGACACATATTGTTTGATTGTTTGTTGTAATTATAAGATTTGGAATTGCATTTACTT
TGTGCGGGAGAGAAGTTTGTGATCAGGTTTGGTCACGAACCTAGAATTGTTCTGACCTCTGCAGAAGAGATCCGACGGATTCTATCTTTGAAGCACTTG

>TRINITY_DN115084_c6_g2_i2 from sample A1 / Example unspliced isoform:

GGCGGGAGAATATTTTGGGGATACATGCAGGAAGCCCTAGATCATAACAAGGGGAAAACGAGATAGCAGCTCCAAGAAACCTGTGCGGAGAAGAGCCACCTGGAAATCCATAGAGAAGAATGAAGGATGAGAACCTGGTAGACGAAGACGTGCTAGTATTCTTTCTGAGAGCAATCGAATGTTGCAGTGGTGAATCCATC
ATTCCTCAACTTGATCCGCTTCATTTTTATATACACCAAAGGCCCATAGTAAAAGAAAAAGGAAATGAAGGGATTCTCCAGGTCACAAGATCGATCCTCGCTTCCTTTTATCGCTTTGTTTTCCCTCTTCCTAATTTAAATGTCTCTCAGGTTTAGTAAGAGCTTTTGAAGAAAAAGGAAATGAAGGGATTCTCCAGGTC
ACAAGATCGATCCTCGCTTCCTTTTATCGATTTGTTTTCCCTCTCCCTAATTTAGATGTCTCTCAGGTTTAGTAAGAGCTTTTGAATGATGTAAATTTGAGGTTTTGTGGTGTGCCCAGTTCATGTATTGATTTGGGCTTTCTAGATTTTGGGATTTTATTTTATTTTGGGGGTTGGGTTTTTTATTTTATTTTGGGGAG
TTTAGGTTATGGATGGATCTCAAAATAACTGGGGCGATGTGGTGACTATATTTCTCACCAAGATATTTGACATGGCGAACTACAATAGACTTGATAGTGACATGGAGTCCCGAGAATGATAGCTTCATTGTCTGCAACCCCTGGAATTTTAACGAGACTTATTGCCTAAGTACTTCAAGCACAACAATTTCTCCAACTTT
GTGAGGAAGCTCAATACATATgtaagtatcaataatttccttcggcatttccatgtttttcattctttgattgtgttgaataggggttttggggttgataagcatgcgagtcaatttcaaattctgcattgaggccctatattgttggatctctttcagAGTCTTGGGAGGTGGTATCAATGGTCTTCTATCCACACTAT
TTTTTGCTGGAATATCCCCTTTTCTACTATATTTCTTCATCAAATACTTTTGGATGCCATGGGCTATCTATGTAGCTATGAAAAAAAAGGTATTCAAAGGTACACCCCCACGTTTTATGGTCAATACTATAATGGATATTGCCAACATGATGCAACAAGAGATACGCACAGACATGGCATCTGTAGATCACAATATCAGA
AAAAGAGAATTTCCATATTGGGTCGAGTGGTCTAGGAGATACGATACTATATTACTTCAAAAGTAATTTTCATAACAGGCTAGACACATATTGTTTGATTGTTTGTTGTAATTATAAGATTTGGAATTGCATTTACTTTGTGCGGGAGAGAAGTTTGTGATCAGGTTTGGTCACGAACCTAGAATTGTTCTGACCTCTGC
AGAAGAGATCCGACGGATTCTATCTTTGAAGCACTTG