NA ----> NA
Intron 1 GTATTGTTTT ... GATGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.62 | 32 | 38 | 49 |
| A2 | 58.19 | 37 | 49 | 54 |
| A3 | 57.23 | 34 | 40 | 51 |
| A4 | 63.64 | 18 | 34 | 29 |
| A5 | 60 | 11 | 13 | 20 |
| A6 | 50.57 | 174 | 117 | 239 |
| A7 | 50.39 | 336 | 224.5 | 458 |
| A8 | 54.12 | 231 | 189 | 356 |
| A9 | 56.11 | 239.8 | 211.8 | 401.3 |
| A10 | 52.76 | 274 | 228 | 384 |
>TRINITY_DN99095_c0_g1_i2 from sample A1 / Example spliced isoformATAGACACATGATAAAACGTTCCACTCGTTGGAGTTCAATCAGTGGCCATTGAGGCGGAGAAAAATGTGTGTTTTTTGATTTCTTTTTAAAGTGGGTTTAGGCAGGTTTTGGAGATGAGTCTGGCTCTTGTTCAGGGATACTCTTCCGAAGAAGAGGAGGCGCCACAGGAGGCTGCTCCTACTGATAGTGACGATGAATT
TGACGAAAATGAAAAAAAGAACGAATCCCAGAAGCAGAAGCTTGCGATACCTCTGCAGTCAACAAAGGGATCACTGTTGCCATCTGCTTTTGATGCTTTTTCTGAGGTTACAGGTCCTCCCGAGTTTTTGAATAACAGTGCCTCTGAACCAATACCAACTAGACCCTCTGAGAAGAGAAATTCATTTGGAGGATGGCAAG
CTGCAAAAGATCCTCGCATCAAGAAAGAGCCACGACCTGGAACTATAGCACGAGGTCCTGCTACATCAATGCCACCACCCAAGAATGTTCCATCACCACCAATTCTTGATAATGTCCAGAAAATTCCTGTTGCAGCAATGCCACCTCGAGAAGATGCTGCAAAGCTACTGGGAATGTGTCTTCAATGTGGGGTGCCAAAG
ACTTACTCAAATGCGCGGGAAGGTCTAGTTTGCCCAGTTTGTGGTGACCGACCTCTTGGGAATCCTAACCATGAAAATGAAAAGAAAAAAGGTTCAACAATTAAAGACAAGGAAAAATCGAAGCGCCTGAAAGGCCAGTCGAGTCATGCCTCGTGGAAGAGTGAAACTGAGATGCAACTACGGCAACAATTTGACTAGCA
GAGTTAAATGAATTTATAAATTATGTTTGTAAATGGAAAATGAGAAATTATATTTCTACTTACCAAACGTTGTGAGCATTTTATTCAATGTCAGATGTTATATTCGTTAAATGTTTTTGATGAAATGCACTCTACAACTGCATCCACTTTGGAGATCTGTATAATTAGTGAATATTCGAGGAAACAATTCAAACATATTT
CTTATGCTTCACTGGGATGCCAAAATTTTTGTATTGTAGCCGCACAGGAAAACTGCAGATTAGCTGCCATGAAAGTACATCACTTTGACATTTCTGGCTTGTTACTGAACTCAAATTAATTGATATACAGATCCAGG
>TRINITY_DN99095_c0_g1_i1 from sample A1 / Example unspliced isoform:ATAGACACATGATAAAACGTTCCACTCGTTGGAGTTCAATCAGTGGCCATTGAGGCGGAGAAAAATGTGTGTTTTTTGATTTCTTTTTAAAGTGGGTTTAGGCAGGTTTTGGAGATGAGTCTGGCTCTTGTTCAGGGATACTCTTCCGAAGAAGAGGAGGCGCCACAGGAGGCTGCTCCTACTGATAGTGACGATGAATT
TGACGAAAATGAAAAAAAGAACGAATCCCAGAAGCAGAAGCTTGCGATACCTCTGCAGTCAACAAAGGGATCACTGTTGCCATCTGCTTTTGATGCTTTTTCTGAGGTTACAGGTCCTCCCGAGTTTTTGAATAACAGTGCCTCTGAACCAATACCAACTAGACCCTCTGAGAAGAGAAATTCATTTGGAGGATGGCAAG
CTGCAAAAGATCCTCGCATCAAGAAAGAGCCACGACCTGgtattgttttggaggctaaagcacaattggtagggattcatgaacgggtacggagtgatgttgcagGAACTATAGCACGAGGTCCTGCTACATCAATGCCACCACCCAAGAATGTTCCATCACCACCAATTCTTGATAATGTCCAGAAAATTCCTGTTGCA
GCAATGCCACCTCGAGAAGATGCTGCAAAGCTACTGGGAATGTGTCTTCAATGTGGGGTGCCAAAGACTTACTCAAATGCGCGGGAAGGTCTAGTTTGCCCAGTTTGTGGTGACCGACCTCTTGGGAATCCTAACCATGAAAATGAAAAGAAAAAAGGTTCAACAATTAAAGACAAGGAAAAATCGAAGCGCCTGAAAGG
CCAGTCGAGTCATGCCTCGTGGAAGAGTGAAACTGAGATGCAACTACGGCAACAATTTGACTAGCAGAGTTAAATGAATTTATAAATTATGTTTGTAAATGGAAAATGAGAAATTATATTTCTACTTACCAAACGTTGTGAGCATTTTATTCAATGTCAGATGTTATATTCGTTAAATGTTTTTGATGAAATGCACTCTA
CAACTGCATCCACTTTGGAGATCTGTATAATTAGTGAATATTCGAGGAAACAATTCAAACATATTTCTTATGCTTCACTGGGATGCCAAAATTTTTGTATTGTAGCCGCACAGGAAAACTGCAGATTAGCTGCCATGAAAGTACATCACTTTGACATTTCTGGCTTGTTACTGAACTCAAATTAATTGATATACAGATCC
AGG
Intron 2 GTCAGTTTTT ... TGGAATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.35 | 45 | 16 | 7 |
| A2 | 14.67 | 32 | 9 | 2 |
| A3 | 20.96 | 66 | 25 | 10 |
| A4 | 25.3 | 31 | 16 | 5 |
| A5 | 23.53 | 13 | 6 | 2 |
| A6 | 20.65 | 267 | 81 | 58 |
| A7 | 22.67 | 353 | 134 | 73 |
| A8 | 18.17 | 358 | 95 | 64 |
| A9 | 21.31 | 371 | 128 | 73 |
| A10 | 19.28 | 291 | 92 | 47 |
>TRINITY_DN94422_c0_g1_i1 from sample A4 / Example spliced isoformGATAAAACGTTCCACTCGTTGGAGTTCAATCAGTGGCCATTGAGGCGGAGAAAAATGTGTGTTTTTTGATTTCTTTTTAAAGTGGGTTTAGGCAGGTTTTGGAGATGAGTCTGGCTCTTGTTCAGGGATACTCTTCCGAAGAAGAGGAGGCGCCACAGGAGGCTGCTACTACTGATAGTGACGATGAATTTGACGAAAAT
GAAAAAAAGAACGAATCCCAGAAGCAGAAGCTTGCGATACCTCTGCAGTCAACAAAGGGATCACTGTTGCCATCTGCTTTTGATGCTTTTTCTGAGGTTACAGGTCCTCCCGAGTTTTTGAATAACAGTGCCTCTGAACCAATACCAACTAGACCCTCTGAGAAGAGAAATTCATTTGGAGGATGGCAAGCTGCAAAAGA
TCCTCGCATCAAGAAAGAGCCACGACCTGGTATTGTTTTGGAGGCTAAAGCACAATTGGTAGGGATTCATGAACGGGTACGGAGTGATGTTGCAGGAACTATAGCACGAGGTCCTGCTACATCAATGCCACCACCCAAGAATGTTCCATCACCACCAATTCTTGATAATGTCCAGAAAATTCCTGTTGCAGCAATGCCAC
CTCGAGAAGATGCTGCAAAGCTACTGGGAATGTGTCTTCAATGTGGGGTGCCAAAGACTTACTCAAATGCGCGGGAAGGTCTAGTTTGCCCAGTTTGTGGTGACCGACCTCTTGGGAATCCTAACCATGAAAATGAAAAGAAAAAAGGTTCAACAATTAAAGACAAGGAAAAATCGAAGCGCCTGAAAGGCCAGTCGAGT
CATGCCTCGTGGAAGAGTGAAACTGAGATGCAACTACGGCAACAATTTGACTAGCAGAGTTAAATGAATTTATAAATTATGTTTGTAAATGGAAAATGAGAAATTATATTTCTACTTACCAAACGTTGTG
>TRINITY_DN94422_c0_g1_i2 from sample A4 / Example unspliced isoform:GATAAAACGTTCCACTCGTTGGAGTTCAATCAGTGGCCATTGAGGCGGAGAAAAATGTGTGTTTTTTGATTTCTTTTTAAAGTGGGTTTAGGCAGGTTTTGGAGATGAGTCTGGCTCTTGTTCAGGGATACTCTTCCGAAGAAGAGGAGGCGCCACAGGAGGCTGCTACTACTGATAGTGACGATGAATTTGACGAAAAT
GAAAAAAAGAACGAATCCCAGAAGCAGAAGCTTGCGATACCTCTGCAGTCAACAAAGGGATCACTGTTGCCATCTGCTTTTGATGCTTTTTCTGAGGTTACAGGTCCTCCCGAGTTTTTGAATAACAGTGCCTCTGAACCAATACCAACTAGACCCTCTGAGAAGAGAAATTCATTTGGAGGATGGCAAGCTGCAAAAGA
TCCTCGCATCAAGAAAGAGCCACGACCTGGTATTGTTTTGGAGGCTAAAGCACAATTGGTAGGGATTCATGAACGGGTACGGAGTGATGTTGCAGGAACTATAGCACGAGGTCCTGCTACATCAATGCCACCACCCAAGAATGTTCCATCACCACCAATTCTTGATAATGTCCAGAAAATTCCTGTTGCAGCAATGCCAC
CTCGAGAAGATGCTGCAAAGCTACTGGGgtcagttttttaaattttatttgtaattttttttgaagcagataaactaactagtaatgaattattaatcgtgattaacctgtattatgtaatttttttggaatacagAATGTGTCTTCAATGTGGGGTGCCAAAGACTTACTCAAATGCGCGGGAAGGTCTAGTTTGCCCA
GTTTGTGGTGACCGACCTCTTGGGAATCCTAACCATGAAAATGAAAAGAAAAAAGGTTCAACAATTAAAGACAAGGAAAAATCGAAGCGCCTGAAAGGCCAGTCGAGTCATGCCTCGTGGAAGAGTGAAACTGAGATGCAACTACGGCAACAATTTGACTAGCAGAGTTAAATGAATTTATAAATTATGTTTGTAAATGG
AAAATGAGAAATTATATTTCTACTTACCAAACGTTGTG