sp|Q940X7|RBX1A_ARATH ----> RING-box protein 1a

Intron 1 GTATGTGTTT ... GATGATGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	12.91	153	25.3	14.3
A2	15.04	169	33.8	18.3
A3	12.82	161	27	13.7
A4	11.8	129	19	17.3
A5	14.53	51	10	5
A6	12.38	1035	166.3	170.7
A7	12.82	1018	172.7	134.3
A8	12.35	1386	224.8	179.7
A9	13.61	1733	315.7	226.2
A10	12.85	1018	172.2	123.3

>TRINITY_DN102206_c0_g1_i3 from sample A1 / Example spliced isoform

ACAAGAGCGAATAACGGTCTTGCCTCTCTCTTTGGTAACATGGAGAGCGAATAAAAGCAGAGCAGGTGAAGAGAATCCAATACAGGCAGAGGCAACGGAACAGGCACATGCACAGGCATTGGTAAAGGAAATTTGTTTGCGGCATCTTTGAGGAGAAAGAAAGAAAAAGATAAAGATAAAGATGGCATCATCAGAGGTCG
CAAACAATAACTCCAACCTTTGCACTCTCACCAAATGGAATGCCGTTGCCTTCTGGGAGTGGGATCTGAAGATGGACAAGTGTGGGATTTGCAGAGAGCACGTCATGAAATTTTGCGACACCTGCTACCAGATGATACAGAACAACGAACCACTGGATGATAATGATAAATGTACTTGTTGGTTGGGAAATTGCAATCAT
GCTTTTCATAAGCATTGCATACGTGGCTGGATGAGAGCCAATGCACAAAAGTGCCCTTATGATTCCCGTCGATTCCAGGTACAAGAAGAATTGAACATCCAGTAGCTGTTATCCATCCATCCACAACCATTTCAGATGGTGCTTTATTGATTTCAACATTATGTAAACCCATATTTGCTTCTCTCAATAATACAGGTCTC
ACTATATTATATACAAAAAAA

>TRINITY_DN102206_c0_g1_i1 from sample A1 / Example unspliced isoform:

ACAAGAGCGAATAACGGTCTTGCCTCTCTCTTTGGTAACATGGAGAGCGAATAAAAGCAGAGCAGGTGAAGAGAATCCAATACAGGCAGAGGCAACGGAACAGGCACATGCACAGGCATTGGTAAAGGAAATTTGTTTGCGGCATCTTTGAGGAGAAAGAAAGAAAAAGATAAAGATAAAGATGGCATCATCAGAGGTCG
CAAACAATAACTCCAACCTTTGCACTCTCACCAAATGGAATGCCGTTGCCTTCTGGGAGTGGGATCTGAAGATGGACAAGTGTGGGATTTGCAGAGAGCACGTCATGAAATTTTgtatgtgttttgtgtttttgttttttatttgtatcgttcttaaaatctgtttctgttcgttttccaatctctccaatagtaactgc
tgttgttgttgatgatgatgtagGCGACACCTGCTACCAGATGATACAGAACAACGAACCACTGGATGATAATGATAAATGTACTTGTTGGTTGGGAAATTGCAATCATGCTTTTCATAAGCATTGCATACGTGGCTGGATGAGAGCCAATGCACAAAAGTGCCCTTATGATTCCCGTCGATTCCAGGTACAAGAAGAAT
TGAACATCCAGTAGCTGTTATCCATCCATCCACAACCATTTCAGATGGTGCTTTATTGATTTCAACATTATGTAAACCCATATTTGCTTCTCTCAATAATACAGGTCTCACTATATTATATACAAAAAAA

Intron 2 GTACTGTACT ... CATTTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	7.33	167	14.5	13.5
A2	8.87	208	27	16
A3	8.79	220	31	15
A4	8.41	173	25.5	9.5
A5	5.96	85	10.5	1
A6	8.28	1276	185.5	65.5
A7	8.13	1381	189.5	77.5
A8	7.51	1769	215.5	97
A9	7.75	2275	308	108.5
A10	8.29	1534	232	70

>TRINITY_DN82912_c0_g1_i1 from sample A2 / Example spliced isoform

CAGGTGAAGAGAATCCAATACAGGCAGAGGCAACGGAACAGGCACATGCACAGGCATTGGTAAAGGAAATTTGTTTGCGGCATCTTTGAGGAGAAAGAAAGAAAAAGATAAAGATAAAGATGGCATCATCAGAGGTCGCAAACAATAACTCCAACCTTTGCACTCTCACCAAATGGAATGCCGTTGCCTTCTGGGAGTGG
GATCTGAAGATGGACAAGTGTGGGATTTGCAGAGAGCACGTCATGAAATTTTGCGACACCTGCTACCAGATGATACAGAACAACGAACCACTGGATGATAATGATAAATGTACTTGTTGGTTGGGAAATTGCAATCATGCTTTTCATAAGCATTGCATACGTGGCTGGATGAGAGCCAATGCACAAAAGTGCCCTTATGA
TTCCCGTCGATTCCAGGTACAAGAAGAATTGAACATCCAGTAGCTGTTATCCATCCATCCACAACCATTTCAGATGGTGCTTTATTGATTTCAACATTATGTAAACCCATATTTGCTTCTCTCAATAATACAGGTCTCACTATATTATATACAAATTTTAAATTAATGGCATTCTTTTATATATATAAATACAAATTCTA
GA

>TRINITY_DN82912_c0_g1_i2 from sample A2 / Example unspliced isoform:

CAGGTGAAGAGAATCCAATACAGGCAGAGGCAACGGAACAGGCACATGCACAGGCATTGGTAAAGGAAATTTGTTTGCGGCATCTTTGAGGAGAAAGAAAGAAAAAGATAAAGATAAAGATGGCATCATCAGAGGTCGCAAACAATAACTCCAACCTTTGCACTCTCACCAAATGGAATGCCGTTGCCTTCTGGGAGTGG
GgtactgtactactttggattcttaaccctaactttcttcaatgttctcctcttcttcaaatatcatgatattcttctttttcattttgcagATCTGAAGATGGACAAGTGTGGGATTTGCAGAGAGCACGTCATGAAATTTTGCGACACCTGCTACCAGATGATACAGAACAACGAACCACTGGATGATAATGATAAAT
GTACTTGTTGGTTGGGAAATTGCAATCATGCTTTTCATAAGCATTGCATACGTGGCTGGATGAGAGCCAATGCACAAAAGTGCCCTTATGATTCCCGTCGATTCCAGGTACAAGAAGAATTGAACATCCAGTAGCTGTTATCCATCCATCCACAACCATTTCAGATGGTGCTTTATTGATTTCAACATTATGTAAACCCA
TATTTGCTTCTCTCAATAATACAGGTCTCACTATATTATATACAAATTTTAAATTAATGGCATTCTTTTATATATATAAATACAAATTCTAGA

Intron 3 GTATGTTACA ... AAAATGACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	11.49	77	0	10
A2	26.51	122	0	44
A3	23.48	101	2	31
A4	10.26	70	4	8
A5	19.23	42	1	10
A6	24.93	852	5	283
A7	25.35	736	5	250
A8	27.27	1195	2	448
A9	26.45	1310	7	471
A10	25.33	731	0	248

>TRINITY_DN35735_c0_g1_i2 from sample A6 / Example spliced isoform

GTCTTGCCTCTCTCTTTGGTAACATGGAGAGCGAATAAAAGCAGAGCAGGTGAAGAGAATCCAATACAGGCAGAGGCAACGGAACAGGCACATGCACAGGCATTGGTAAAGGAAATTTGTTTGCGGCATCTTTGAGGAGAAAGAAAGAAAAAGATAAAGATAAAGATGGCATCATCAGAGGTCGCAAACAATAACTCCAA
CCTTTGCACTCTCACCAAATGGAATGCCGTTGCCTTCTGGGAGTGGGATCTGAAGATGGACAAGTGTGGGATTTGCAGAGAGCACGTCATGAAATTTTGCGACACCTGCTACCAGATGATACAGAACAACGAACCACTGGATGATAATGATAAATGTACTTGTTGGTTGGGAAATTGCAATCATGCTTTTCATAAGCATT
GCATACGTGGCTGGATGAGAGCCAATGCACAAAAGTGCCCTTATGATTCCCGTCGATTCCAGGTACAAGAAGAATTGAACATCCAGTAGCTGTTATCCATCCATCCACAACCATTTCAGATGGTGCTTTATTGATTTCAACATTATGTAAACCCATATTTGCTTCTCTCAATAATACAGGTCTCACTATATTATATACAA
ATTTTAAATTAATGGCATTCTTTTATATATATAAATACAAATTCTAGAT

>TRINITY_DN35735_c0_g1_i1 from sample A6 / Example unspliced isoform:

ACTCTCACCAAATGGAATGCCGTAGCCTTGTGGGAGTGGGGTACTGTACTACTTTGGATTCTTAACCCTAACTTTCTTCAATGTTCTCCTCTTCTTCAAATATCATGATATTCTTCTTTTTCATTTTGCAGATCTGAAGATGGACAAGTGTGGGATTTGCAGAGAGCACGTCATGAAATTTTGTATGTGTTTTGTGTTTT
TGTTTTTTATTTGTATCGTTCTTAAAATCTGTTTCTGTTCGTTTTCCAATCTCTCCAATAGTAACTGCTGTTGTTGTTGATGATGATGTAGGCGACACCTGCTACCAGATGATACAGAACAACGAACCACTGGATGATAATGATAAATGTACTTGTTGGTTGGgtatgttacataacttaattaattattccaatatata
ttttagcacaaaaatctcgacaaattccgagtctatgcatatgatatcgtaactttattattcggagtctctgcatatattctctaataactgcatatattctctaataacttcattactatatttaaaatgacagGAAATTGCAATCATGCTTTTCATAAGCATTGCATACGTGGCTGGATGAGAGCCAATGCACAAAA
GTGCCCTTATGATTCCCGTCGATTCCAGGTACAAGAAGAATTGAACATCCAGTAGCTGTTATCCATCCATCCACAACCATTTCAGATGGTGCTTTATTGATTTCAACATTATGTAAACCCATATTTGCTTCTCTCAATAATACAGGTCTCACTATATTATATACAAATTTTAAATTAATGGCATTCTTTTATATATATAA
ATACAAATTCTAGAT