sp|Q38870|CDPK2_ARATH ----> Calcium-dependent protein kinase 2
Intron 1 GTGAGTAAAT ... GTTTACACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.72 | 86.7 | 1 | 21 |
| A2 | 28.98 | 39.7 | 0 | 16 |
| A3 | 17.46 | 53.4 | 2 | 11 |
| A4 | 13.12 | 46.7 | 0 | 7 |
| A5 | 23.33 | 13.4 | 0 | 4 |
| A6 | 27.5 | 2.8 | 0 | 1 |
| A7 | 26.61 | 41.7 | 0 | 15 |
| A8 | 12.73 | 22.4 | 0 | 3 |
| A9 | 21.01 | 53.2 | 0 | 14 |
| A10 | 25.74 | 61.5 | 0 | 21 |
>TRINITY_DN130702_c2_g1_i7 from sample A1 / Example spliced isoformTATACTCCTAGGTTTAATAAATCCAATAGCGAGATGTATATGTAAAGACTGGAGAAGATTTAATAAACGCGGGTGTGTGTTGCGAGGAATAAATTCGGAGAGACAGGCTGCGATTGCACTGTTCTTCTCTCGCACATCGTTGTTCGTATTATTATGACCATTGAAGAAGAAATACAGGAGAAGGGTTTGGGGTTTGTTTA
TTATTCTTTCGGGCAAGCAATTGCCCCCAACCGATTAGAAAGAGGTCGCGAGATCGAGTCTCGCTAGACAAATATCTGCCTGCATTCGTCCCGCCCAGCTGATCATGGCCGCCGTTCCTCCTCAGACGCAACAGCAGCAACAACAAGCTGAAGCTGCCGCAATGACTCCGTGGATGAACGGGCCCAATACAGTAGCCACT
CCAGCAGTTTCTGGGCACCCATCTGGACCTCCTCAAACTCTCATGGCAGGAAATCCTTCATCCGGGCCGCTGCCACCTCGTCCACCTGGCATGGTGTCTTCCGGACCTCAAAACTTTGGACCTCCTCTGCCAATGCAATTTAGATCTGGAGTACCACAACAAACAGGTCAACAATTTATGCCTCCAAGTAGCCAACAGTT
TCGGCCTATGGCTCAAGGTATACCGCCGCCAAACATTGGAACTTCTCAATCTGTTCAACCACAGCCTGTGCAGTATCCTCCACAAATGCAACATTTGCCTCCACGTCCAGGGCAACAACAACAAACTCCGCCTTCATCTCAGGCTCCTTCTATGACATATCTTCAACAGCCAAGGCCAATGACAAGTGGGGCTCCTCCAT
CTCAGCAGCCTCAGCAATCTCAACAGCCTCTTAGTATGCCGCCTCCACCTGGTTTAGGTGGCATGGGATTGCCACCATCATCATCCTATACGTTTGCTCCATCTACATATGGTCAGTCACAGAATTCATACAGTGTTAATCCACAATATCAAGCTGTTTCTCAGCCTCAACACATGACGCCGGTGCATTCTGGAACTCAG
CAATGGGGATCTGCAAATCAAAATAGTGTTCCTGCATCTCAAGGAATGCAGACGGGCCAACAATCTGCTGTTGGTTTTGCTTCAGCTCCTGGAGCTGTTGTACAACCTAGTAATTCCAACATACAAAGTTCTTCAGATTGGCAAGAACACACTGCTACAGATGGAAGAAGATATTATTTCAACAAGAAGACAAGGCAGTC
AAGTTGGGAAAAGCCTCAAGAATTGATGACACCAATTGAGCGGGCGGATGCATCCACTGTTTGGAAAGAATTCACAACTCCAGAGGGGCGAAAGTACTATTACAACAAGGTCACCAAACAGTCCAAGTGGACTATTCCAGATGAACTCAAGATAGCACGAGAGCAGGCAGAAAAGCCAGCAGCTTCAGTTGGAAACTCTG
AAGGATCGCTATCCACAGCCGCATCACCAGTTCCAGTTGCTGTCATGTCATCTCCATCTAAAGCATCACCAAATCTATCTGCTCCCAGCATATCTGTATCTGCTACAGTCTTAGCATCAACAGGGACTCCGACAGTTGCTGCACCAGTTATGCCTCTTTTGCCCACAAACCCAGTTAGTGTTATGGCTTCTTTGACACCC
ACTATTTCTACATCTGCTGGAGCTGTCTCATCTGCAATGACCACATCTGTTCTCACTACTTCTCCCGCAATTGGTGTTGTGCCATCAATCACTGCAGCTGCAATACCTCTTGCTAGTCCTGCTTCTTTAACACCAACTGCTGTGGCCCCCTCAACTAATGCAGTGACCACAAATGTAGCGGAAACTGCAAATGCTGCAAC
AGCGTCAATTGCTGATAAAACAAATGTTGTAGATTTAAAGGAAGGAGGACTTGATGAAGCTTCTGCACAGGATTTGGAGGAAGCTAAGAAAGCGATGCCTGTAACTGGAAAGGTTAATGTAACTCCCTTGTCAGAAGAGAAAGCTGTTGACGAGGAGCCTCTGATTTATGCCAATAAAATAGAGGCGAAGAATGCTTTTA
AGGAACTCCTAGAATCTGCACATGTAGAAGCTGATTGGACTTGGGAACAGGCGATGCGTGTAATCATCAATGATAAGCGATATGGAGCCCTCAAAACCCTTGGAGAGCGTAAACAAGCTTTCAATGAATATTTGGCACAGCGAAAGAAACACGAGGCTGAAGAACGGCGCATTCGGCAGAAGAGAGCAAGGGAAGATTTT
GTAATTATGTTGGAGGAGTGTAAAGAACTTACATCAGCGACGCGATGGAGTAAGGCCGTTACTCTCTTTGAAAACGATGCAAGGTTCCATGCTGTTGATCGAGGAAGAGAAAGGGAGGAGCTGTTTGAGAGCTATTTGATTGAGTTGGAGCGGAAGGAACGGGACAAGGCGCGAGAAGAGCGGAAAAGGAATCTTGTTGA
ATATAGAGCATATTTGGAGTCTTGTGATTTCATAAAGGCTAATACTCAATGGAGGAAAGTACAAGATCGGCTAGAAGATGATGAGAGATGCTCACGATTGGATAAAATAGATCGATTAGAAATTTTCCAGGAGTATATCCGTGATTTGGAGAAGGAAGAAGAAGAAGAAAGGAGGATTCAAAAGGAACAATTACGACGTA
AGGAGCGTAAGAACCGTGATGAATTTCGAAAGTTAATGGAGGAACACCGGGCATCTGGTATACTTACAGCTAAGACTCATTGGCGTGATTACTGTGGCAAGGTTAAGGATTACCCAGCTTATGTTGCTGTTGCATCGAACACATCTGGTACAACACCTAAAGAATTGTTTGAAGATGTTGCAGAGGAGCTAGAGAAGCAG
TATCACGAAGACAAAGCAAGGATAAAAGATGCCATGAAGGCAGGAAAGGTACGCTATTTGGGCTTATAATATAGTTAACAGAATGATGAGGTATTGTTTTTTAATTTTTCAATGTGGTCATTTCAGCTCACCATAACATCATCATGGACTTTCGACAAGTTCAAAGCTTCAATTGCTGAAGAATGTGATTTGGCTGTAGT
ATCTGAATCAAACCTAAAGGTTAGTGATAGTTATATCTCTAACTAGACTGAAGATATTTGTTATCTGAAGTACTGTTATTGATAGAAGATGAATATAAATTAATCATATCCTGATGTTACGTGAAGTGAAAATCTTAGCCCAAGGGGTTAGCTCAACTGGTTGTTTCCATTGTTGCTGGGCCATTTTTGTGCCAGCAGCT
GCCTGGTTGGAATCCCCTTGGGTGAGGTGCACTAGTCTATGCCGATGGGTTTAC
>TRINITY_DN130702_c2_g1_i12 from sample A1 / Example unspliced isoform:CACAACTCCAGAGGGGCGAAAgtgagtaaatatatttctttaataagaccattgttgatttgatgtaagtcgaattgaaagcttttccgtatttatctcaaattcccatctcttttgtttacacagGTACTATTACAACAAGGTCACCAAACAGTCCAAGTGGACTATTCCAGATGAACTCAAGATAGCACGAGAGCAGG
CAGAAAAGCCAGCAGCTTCAGTTGGAAACTCTGAAGGATCGCTATCCACAGCCGCATCACCAGTTCCAGTTGCTGTCATGTCATCTCCATCTAAAGCATCACCAAATCTATCTGCTCCCAGCATATCTGTATCTGCTACAGTCTTAGCATCAACAGGGACTCCGACAGTTGCTGCACCAGTTATGCCTCTTTTGCCCACA
AACCCAGTTAGTGTTATGGCTTCTTTGACACCCACTATTTCTACATCTGCTGGAGCTGTCTCATCTGCAATGACCACATCTGTTCTCACTACTTCTCCCGCAATTGGTGTTGTGCCATCAATCACTGCAGCTGCAATACCTCTTGCTAGTCCTGCTTCTTTAACACCAACTGCTGTGGCCCCCTCAACTAATGCAGTGAC
CACAAATGTAGCGGAAACTGCAAATGCTGCAACAGCGTAAGGAAGATATTAACTATATTCTATCAAAGGGATGATGGGGTTAGTTGATTGCCTCCTACTGATCTTCTGTTCTTTTCTGTCATTTACAGGTCAATTGCTGATAAAACAAATGTTGTAGATTTAAAGGAAGGAGGACTTGATGAAGCTTCTGCACAGGATTT
GGAGGAAGCTAAGAAAGCGATGCCTGTAACTGGAAAGGTTAATGTAACTCCCTTGTCAGAAGAGAAAGCTGTTGACGAGGAGCCTCTGATTTATGCCAATAAAATAGAGGCGAAGAATGCTTTTAAGGAACTCCTAGAATCTGCACATGTAGAAGCTGATTGGACTTGGGAACAGGCGATGCGTGTAATCATCAATGATA
AGCGATATGGAGCCCTCAAAACCCTTGGAGAGCGTAAACAAGCTTTCAATGAATATTTGGCACAGCGAAAGAAACACGAGGCTGAAGAACGGCGCATTCGGCAGAAGAGAGCAAGGGAAGATTTTGTAATTATGTTGGAGGTAACCTTGCATCTTCATTTGAAATTCTTTGAGCTTGCTACACTTCTGGAATCTACCTAT
AAAAATTAAACTGTTCTCGCTTATTTTATCATGGACAACTGAATATTCAAGGATTAAAATTATTTTCAATAATAAAATTTATCTTTTTTTGTAATACTGTTGTAACAATTGTATTTTTCTCAGGAGTGTAAAGAACTTACATCAGCGACGCGATGGAGGTAGGTTCATTCATATATTGACTCAGACTGTTTATGCCCAGC
CAAGTACCATTTGAATATATGTTCAACCTCTAATTAATGTTTTTAAAAGATCTAGAATAATTGAGTTCCCATAACTATTTTTTGTATTTTCTTATAGATGCAGTATAGTTGAGAGTGCTTTTACCTAACTGTTATTATTCATTTTGAGCAGTAAGGCCGTTACTCTCTTTGAAAACGATGCAAGGTTCCATGCTGTTGAT
CGAGGAAGAGAAAGGGAGGAGCTGTTTGAGAGCTATTTGATTGAGTTGGAGCGGAAGGTATGAACACACTTACTTTATTAAGCCATCTTTCAGTTAATTAGTTAAATGGGAGCTGTATTTTACATACGTATGTTGGAAAAGCAACTTTTATTCAAAATTCATGGATGAATATTATATATATTTGTCAAATTTAGCTAGTA
GAACATAGCTACATGCACTTAATTTAAGGCACAGTTGTTGTCTAGATAATGATGCAAAGCATCATAATGTTGATGAACAGCTCTTGCCAACATAGGCAAGAGGGCCCTATGTTATACCTTGCTCCAAGATCTGGAGTACCCTCAATCCATTGAGCTACAGCTTCAATTTTACAAAGATTAAATTGTAGAAAGTCACAAAT
TTTGCAATACATTGTTATTTTAGTGTATTTTGGCTTCCTATTTCAAATACATAGATGCTTTCGTCTCCCATACCAACAAAATTTTCCAAGCTCTATGATTGACATATTGATGAAGAACAAACATAAATTCTGAAAACATTACCTTGTGGGCACCATTTCTCCCACTTGGAAAACACTTGCCAGCAAAATCAATTTCAATC
CAGTACCGTGGCTGCCACGTGGACACAATGTCTCATCTCCAGCATTAACACTGTCTCCATGCCAACAATTCTTTCCTGACTATATGGCTAACACGGCAAACCCAGCTCTATGACTGACTTGACAACGCCTCATCTCCTTGACAGTTTCCTAGGAATTTTACTTCGTGCTGTGCCTCTCTCCTTAGCTCTTGTGTCTGGCT
GCCATTGACCCAAGTAAATGGTTGACTCAATATCTATCTTCTGTGATTATTAATGTCATCTGGGCACCAACTTGCATGTCGGTTGTTCCACATGACTGCTCTGTGAATTGTTGCCTGTGATACCCTCTTGCAAAACTCAATTTTATGCAACTTTCATTGACAATATGAGTTGATACAAACTCTGTTGATGTCAAAACTAT
ATTTTTTTTAGGAGATAACCTTTGGTACATTCAAAGATAAATATTCCATTCATGTTTTCTGCCTGTTGGAACACTCGTGTCAAAGGACAGAGAGTGAGAAATGACAAATAACAAAAAGATGATCAACGGTCTCATTTCCCAGACCCCCTTATAGAGTACACACCTGCTTGGCCTATTCCAATTTCTTTTCTGGCAATTGG
CCCAAGTCAGAATCTGTGAGCCTTGTAAAGCTTTGTGCATGCAGCTTCTGTATCAAACCTGGTCAAAGCGTATAATTACCACTGCAAACAATCCAGGGATCTTCTCCCAATCTTAATTTATAGCCTCTTCCAGTCCTCCAGGTCTCCAAGCCACCTAAAGTCAATGATTGGAAAGGATTTGAGTAGCCCTTTCCTTACTA
GTGAAGCTCTTTCAAAGATTCCTTTTTTTTTTTTTCTGATCCCATTTTCAATGTTGTCATCTCTTAGATACTTACTCTTGATAACTTTAATCCATAAACGATCAATAAAGAGACTCTTTGTTGCTAGTGCCTGACTAAAGATATGAATGTTCTTTAGTCCTCATCTCCGGTTTCTTTTGTTCTAGTTATTTTTGTCCATT
TTATAAGAAGAGGGGAATACCTTCAGTTTCTTTCTTCCCAGACCAAAAAGGCTAAAACAATTTTACTTATCTTGTCTAGTATACCCTTGGGGATATGAGCAATGAATAGCCAGTAAACAGGTATACTTTCTGGAGCTGACTCAACTAACACCAATCTACCACCTTGTGACAGCCATCTAAAAGACCAATAGGGCACCCTA
GCATTGTATAAACATAACCACGCAGCAAATCTGTAATCATTTGGTTTTATTTTAAAATCCAGGTATTTTACTTCTTGGTCCAGAGAAGCAGAAGTCAGAGTAAAGACTTGGTAAACCTGTTCTTCAATTCTGAACTCAATCCATTGTAAAGCATACAAGACTTACCTGTAGCTACACAACAAGTATCCAAGAGTCTTATA
TTGTTTCATTTTCCTTAAAGTTCCTTGCCCAAAAATCAAGTTTTAATCAACAAATAACAAGTGAGTAATGTACAGTTACACAGAACCTGCTACTCTTATGCCTCTGATAAAGCCCTCTCTTCTGGCTTCCATGATCAGCCT
Intron 2 GTAAGGAAGA ... TCATTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.09 | 80 | 16 | 36 |
| A2 | 22.91 | 47 | 20 | 8 |
| A3 | 12.92 | 46 | 4 | 10.5 |
| A4 | 13.62 | 39 | 4 | 9 |
| A5 | 31.8 | 31 | 18 | 11 |
| A6 | -1 | 0 | 0 | 1 |
| A7 | 19.62 | 50 | 18.5 | 6 |
| A8 | 13.67 | 28 | 6 | 3 |
| A9 | 12.22 | 60 | 7 | 10.5 |
| A10 | 13.98 | 36 | 7 | 5 |
>TRINITY_DN130702_c2_g1_i7 from sample A1 / Example spliced isoformTATACTCCTAGGTTTAATAAATCCAATAGCGAGATGTATATGTAAAGACTGGAGAAGATTTAATAAACGCGGGTGTGTGTTGCGAGGAATAAATTCGGAGAGACAGGCTGCGATTGCACTGTTCTTCTCTCGCACATCGTTGTTCGTATTATTATGACCATTGAAGAAGAAATACAGGAGAAGGGTTTGGGGTTTGTTTA
TTATTCTTTCGGGCAAGCAATTGCCCCCAACCGATTAGAAAGAGGTCGCGAGATCGAGTCTCGCTAGACAAATATCTGCCTGCATTCGTCCCGCCCAGCTGATCATGGCCGCCGTTCCTCCTCAGACGCAACAGCAGCAACAACAAGCTGAAGCTGCCGCAATGACTCCGTGGATGAACGGGCCCAATACAGTAGCCACT
CCAGCAGTTTCTGGGCACCCATCTGGACCTCCTCAAACTCTCATGGCAGGAAATCCTTCATCCGGGCCGCTGCCACCTCGTCCACCTGGCATGGTGTCTTCCGGACCTCAAAACTTTGGACCTCCTCTGCCAATGCAATTTAGATCTGGAGTACCACAACAAACAGGTCAACAATTTATGCCTCCAAGTAGCCAACAGTT
TCGGCCTATGGCTCAAGGTATACCGCCGCCAAACATTGGAACTTCTCAATCTGTTCAACCACAGCCTGTGCAGTATCCTCCACAAATGCAACATTTGCCTCCACGTCCAGGGCAACAACAACAAACTCCGCCTTCATCTCAGGCTCCTTCTATGACATATCTTCAACAGCCAAGGCCAATGACAAGTGGGGCTCCTCCAT
CTCAGCAGCCTCAGCAATCTCAACAGCCTCTTAGTATGCCGCCTCCACCTGGTTTAGGTGGCATGGGATTGCCACCATCATCATCCTATACGTTTGCTCCATCTACATATGGTCAGTCACAGAATTCATACAGTGTTAATCCACAATATCAAGCTGTTTCTCAGCCTCAACACATGACGCCGGTGCATTCTGGAACTCAG
CAATGGGGATCTGCAAATCAAAATAGTGTTCCTGCATCTCAAGGAATGCAGACGGGCCAACAATCTGCTGTTGGTTTTGCTTCAGCTCCTGGAGCTGTTGTACAACCTAGTAATTCCAACATACAAAGTTCTTCAGATTGGCAAGAACACACTGCTACAGATGGAAGAAGATATTATTTCAACAAGAAGACAAGGCAGTC
AAGTTGGGAAAAGCCTCAAGAATTGATGACACCAATTGAGCGGGCGGATGCATCCACTGTTTGGAAAGAATTCACAACTCCAGAGGGGCGAAAGTACTATTACAACAAGGTCACCAAACAGTCCAAGTGGACTATTCCAGATGAACTCAAGATAGCACGAGAGCAGGCAGAAAAGCCAGCAGCTTCAGTTGGAAACTCTG
AAGGATCGCTATCCACAGCCGCATCACCAGTTCCAGTTGCTGTCATGTCATCTCCATCTAAAGCATCACCAAATCTATCTGCTCCCAGCATATCTGTATCTGCTACAGTCTTAGCATCAACAGGGACTCCGACAGTTGCTGCACCAGTTATGCCTCTTTTGCCCACAAACCCAGTTAGTGTTATGGCTTCTTTGACACCC
ACTATTTCTACATCTGCTGGAGCTGTCTCATCTGCAATGACCACATCTGTTCTCACTACTTCTCCCGCAATTGGTGTTGTGCCATCAATCACTGCAGCTGCAATACCTCTTGCTAGTCCTGCTTCTTTAACACCAACTGCTGTGGCCCCCTCAACTAATGCAGTGACCACAAATGTAGCGGAAACTGCAAATGCTGCAAC
AGCGTCAATTGCTGATAAAACAAATGTTGTAGATTTAAAGGAAGGAGGACTTGATGAAGCTTCTGCACAGGATTTGGAGGAAGCTAAGAAAGCGATGCCTGTAACTGGAAAGGTTAATGTAACTCCCTTGTCAGAAGAGAAAGCTGTTGACGAGGAGCCTCTGATTTATGCCAATAAAATAGAGGCGAAGAATGCTTTTA
AGGAACTCCTAGAATCTGCACATGTAGAAGCTGATTGGACTTGGGAACAGGCGATGCGTGTAATCATCAATGATAAGCGATATGGAGCCCTCAAAACCCTTGGAGAGCGTAAACAAGCTTTCAATGAATATTTGGCACAGCGAAAGAAACACGAGGCTGAAGAACGGCGCATTCGGCAGAAGAGAGCAAGGGAAGATTTT
GTAATTATGTTGGAGGAGTGTAAAGAACTTACATCAGCGACGCGATGGAGTAAGGCCGTTACTCTCTTTGAAAACGATGCAAGGTTCCATGCTGTTGATCGAGGAAGAGAAAGGGAGGAGCTGTTTGAGAGCTATTTGATTGAGTTGGAGCGGAAGGAACGGGACAAGGCGCGAGAAGAGCGGAAAAGGAATCTTGTTGA
ATATAGAGCATATTTGGAGTCTTGTGATTTCATAAAGGCTAATACTCAATGGAGGAAAGTACAAGATCGGCTAGAAGATGATGAGAGATGCTCACGATTGGATAAAATAGATCGATTAGAAATTTTCCAGGAGTATATCCGTGATTTGGAGAAGGAAGAAGAAGAAGAAAGGAGGATTCAAAAGGAACAATTACGACGTA
AGGAGCGTAAGAACCGTGATGAATTTCGAAAGTTAATGGAGGAACACCGGGCATCTGGTATACTTACAGCTAAGACTCATTGGCGTGATTACTGTGGCAAGGTTAAGGATTACCCAGCTTATGTTGCTGTTGCATCGAACACATCTGGTACAACACCTAAAGAATTGTTTGAAGATGTTGCAGAGGAGCTAGAGAAGCAG
TATCACGAAGACAAAGCAAGGATAAAAGATGCCATGAAGGCAGGAAAGGTACGCTATTTGGGCTTATAATATAGTTAACAGAATGATGAGGTATTGTTTTTTAATTTTTCAATGTGGTCATTTCAGCTCACCATAACATCATCATGGACTTTCGACAAGTTCAAAGCTTCAATTGCTGAAGAATGTGATTTGGCTGTAGT
ATCTGAATCAAACCTAAAGGTTAGTGATAGTTATATCTCTAACTAGACTGAAGATATTTGTTATCTGAAGTACTGTTATTGATAGAAGATGAATATAAATTAATCATATCCTGATGTTACGTGAAGTGAAAATCTTAGCCCAAGGGGTTAGCTCAACTGGTTGTTTCCATTGTTGCTGGGCCATTTTTGTGCCAGCAGCT
GCCTGGTTGGAATCCCCTTGGGTGAGGTGCACTAGTCTATGCCGATGGGTTTAC
>TRINITY_DN130702_c2_g1_i6 from sample A1 / Example unspliced isoform:TATACTCCTAGGTTTAATAAATCCAATAGCGAGATGTATATGTAAAGACTGGAGAAGATTTAATAAACGCGGGTGTGTGTTGCGAGGAATAAATTCGGAGAGACAGGCTGCGATTGCACTGTTCTTCTCTCGCACATCGTTGTTCGTATTATTATGACCATTGAAGAAGAAATACAGGAGAAGGGTTTGGGGTTTGTTTA
TTATTCTTTCGGGCAAGCAATTGCCCCCAACCGATTAGAAAGAGGTCGCGAGATCGAGTCTCGCTAGACAAATATCTGCCTGCATTCGTCCCGCCCAGCTGATCATGGCCGCCGTTCCTCCTCAGACGCAACAGCAGCAACAACAAGCTGAAGCTGCCGCAATGACTCCGTGGATGAACGGGCCCAATACAGTAGCCACT
CCAGCAGTTTCTGGGCACCCATCTGGACCTCCTCAAACTCTCATGGCAGGAAATCCTTCATCCGGGCCGCTGCCACCTCGTCCACCTGGCATGGTGTCTTCCGGACCTCAAAACTTTGGACCTCCTCTGCCAATGCAATTTAGATCTGGAGTACCACAACAAACAGGTCAACAATTTATGCCTCCAAGTAGCCAACAGTT
TCGGCCTATGGCTCAAGGTATACCGCCGCCAAACATTGGAACTTCTCAATCTGTTCAACCACAGCCTGTGCAGTATCCTCCACAAATGCAACATTTGCCTCCACGTCCAGGGCAACAACAACAAACTCCGCCTTCATCTCAGGCTCCTTCTATGACATATCTTCAACAGCCAAGGCCAATGACAAGTGGGGCTCCTCCAT
CTCAGCAGCCTCAGCAATCTCAACAGCCTCTTAGTATGCCGCCTCCACCTGGTTTAGGTGGCATGGGATTGCCACCATCATCATCCTATACGTTTGCTCCATCTACATATGGTCAGTCACAGAATTCATACAGTGTTAATCCACAATATCAAGCTGTTTCTCAGCCTCAACACATGACGCCGGTGCATTCTGGAACTCAG
CAATGGGGATCTGCAAATCAAAATAGTGTTCCTGCATCTCAAGGAATGCAGACGGGCCAACAATCTGCTGTTGGTTTTGCTTCAGCTCCTGGAGCTGTTGTACAACCTAGTAATTCCAACATACAAAGTTCTTCAGATTGGCAAGAACACACTGCTACAGATGGAAGAAGATATTATTTCAACAAGAAGACAAGGCAGTC
AAGTTGGGAAAAGCCTCAAGAATTGATGACACCAATTGAGCGGGCGGATGCATCCACTGTTTGGAAAGAATTCACAACTCCAGAGGGGCGAAAGTACTATTACAACAAGGTCACCAAACAGTCCAAGTGGACTATTCCAGATGAACTCAAGATAGCACGAGAGCAGGCAGAAAAGCCAGCAGCTTCAGTTGGAAACTCTG
AAGGATCGCTATCCACAGCCGCATCACCAGTTCCAGTTGCTGTCATGTCATCTCCATCTAAAGCATCACCAAATCTATCTGCTCCCAGCATATCTGTATCTGCTACAGTCTTAGCATCAACAGGGACTCCGACAGTTGCTGCACCAGTTATGCCTCTTTTGCCCACAAACCCAGTTAGTGTTATGGCTTCTTTGACACCC
ACTATTTCTACATCTGCTGGAGCTGTCTCATCTGCAATGACCACATCTGTTCTCACTACTTCTCCCGCAATTGGTGTTGTGCCATCAATCACTGCAGCTGCAATACCTCTTGCTAGTCCTGCTTCTTTAACACCAACTGCTGTGGCCCCCTCAACTAATGCAGTGACCACAAATGTAGCGGAAACTGCAAATGCTGCAAC
AGCgtaaggaagatattaactatattctatcaaagggatgatggggttagttgattgcctcctactgatcttctgttcttttctgtcatttacagGTCAATTGCTGATAAAACAAATGTTGTAGATTTAAAGGAAGGAGGACTTGATGAAGCTTCTGCACAGGATTTGGAGGTAAAAACTTACAAATATAAATGTCATTC
AGATTTTTATTTACAAACATCTTTACTTAAAATTGTTCTCTTACCCTTTTCTATAAATTCATTCTTAAGAGGGCTATTTCCTTCTTAGAAAAGCAGGATTTCCTCCAACATCATAATGTTATAAATTATAATGTATGGACTGCTTATTTACATTCAAATACAAGGTCATCCTTGATTGCCTCGTCTAGGAATGCTGCTGT
GTGTGGGGTTCAGCCAGCTTGGTTGTGTGGTAGAAAATTTATAATGGTAATGATAATTCCCTGCTCCTGTTTTTCCCATGAAATATTGTCATACTGTATGCAAAATTAAAATTGGCACTAGCTTTTAGGACCTAGACATAGCTTCTTCAGTTTCCCTTCCTATTTAGGCAAGGTCTCTAGTTCAGCCTATATCATCAGAT
TGAATGTATATTATTTCTAAG
Intron 3 GTAAGCATGG ... GTATTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.18 | 32 | 14 | 15 |
| A2 | 17.65 | 28 | 4 | 8 |
| A3 | 27.66 | 17 | 6 | 7 |
| A4 | 13.79 | 50 | 5 | 11 |
| A5 | 26.32 | 14 | 3 | 7 |
| A6 | 9.09 | 5 | 0 | 1 |
| A7 | 20.93 | 34 | 8 | 10 |
| A8 | 21.74 | 9 | 3 | 2 |
| A9 | 14.29 | 36 | 4 | 8 |
| A10 | 18.25 | 56 | 16 | 9 |
>TRINITY_DN130702_c2_g1_i7 from sample A1 / Example spliced isoformTATACTCCTAGGTTTAATAAATCCAATAGCGAGATGTATATGTAAAGACTGGAGAAGATTTAATAAACGCGGGTGTGTGTTGCGAGGAATAAATTCGGAGAGACAGGCTGCGATTGCACTGTTCTTCTCTCGCACATCGTTGTTCGTATTATTATGACCATTGAAGAAGAAATACAGGAGAAGGGTTTGGGGTTTGTTTA
TTATTCTTTCGGGCAAGCAATTGCCCCCAACCGATTAGAAAGAGGTCGCGAGATCGAGTCTCGCTAGACAAATATCTGCCTGCATTCGTCCCGCCCAGCTGATCATGGCCGCCGTTCCTCCTCAGACGCAACAGCAGCAACAACAAGCTGAAGCTGCCGCAATGACTCCGTGGATGAACGGGCCCAATACAGTAGCCACT
CCAGCAGTTTCTGGGCACCCATCTGGACCTCCTCAAACTCTCATGGCAGGAAATCCTTCATCCGGGCCGCTGCCACCTCGTCCACCTGGCATGGTGTCTTCCGGACCTCAAAACTTTGGACCTCCTCTGCCAATGCAATTTAGATCTGGAGTACCACAACAAACAGGTCAACAATTTATGCCTCCAAGTAGCCAACAGTT
TCGGCCTATGGCTCAAGGTATACCGCCGCCAAACATTGGAACTTCTCAATCTGTTCAACCACAGCCTGTGCAGTATCCTCCACAAATGCAACATTTGCCTCCACGTCCAGGGCAACAACAACAAACTCCGCCTTCATCTCAGGCTCCTTCTATGACATATCTTCAACAGCCAAGGCCAATGACAAGTGGGGCTCCTCCAT
CTCAGCAGCCTCAGCAATCTCAACAGCCTCTTAGTATGCCGCCTCCACCTGGTTTAGGTGGCATGGGATTGCCACCATCATCATCCTATACGTTTGCTCCATCTACATATGGTCAGTCACAGAATTCATACAGTGTTAATCCACAATATCAAGCTGTTTCTCAGCCTCAACACATGACGCCGGTGCATTCTGGAACTCAG
CAATGGGGATCTGCAAATCAAAATAGTGTTCCTGCATCTCAAGGAATGCAGACGGGCCAACAATCTGCTGTTGGTTTTGCTTCAGCTCCTGGAGCTGTTGTACAACCTAGTAATTCCAACATACAAAGTTCTTCAGATTGGCAAGAACACACTGCTACAGATGGAAGAAGATATTATTTCAACAAGAAGACAAGGCAGTC
AAGTTGGGAAAAGCCTCAAGAATTGATGACACCAATTGAGCGGGCGGATGCATCCACTGTTTGGAAAGAATTCACAACTCCAGAGGGGCGAAAGTACTATTACAACAAGGTCACCAAACAGTCCAAGTGGACTATTCCAGATGAACTCAAGATAGCACGAGAGCAGGCAGAAAAGCCAGCAGCTTCAGTTGGAAACTCTG
AAGGATCGCTATCCACAGCCGCATCACCAGTTCCAGTTGCTGTCATGTCATCTCCATCTAAAGCATCACCAAATCTATCTGCTCCCAGCATATCTGTATCTGCTACAGTCTTAGCATCAACAGGGACTCCGACAGTTGCTGCACCAGTTATGCCTCTTTTGCCCACAAACCCAGTTAGTGTTATGGCTTCTTTGACACCC
ACTATTTCTACATCTGCTGGAGCTGTCTCATCTGCAATGACCACATCTGTTCTCACTACTTCTCCCGCAATTGGTGTTGTGCCATCAATCACTGCAGCTGCAATACCTCTTGCTAGTCCTGCTTCTTTAACACCAACTGCTGTGGCCCCCTCAACTAATGCAGTGACCACAAATGTAGCGGAAACTGCAAATGCTGCAAC
AGCGTCAATTGCTGATAAAACAAATGTTGTAGATTTAAAGGAAGGAGGACTTGATGAAGCTTCTGCACAGGATTTGGAGGAAGCTAAGAAAGCGATGCCTGTAACTGGAAAGGTTAATGTAACTCCCTTGTCAGAAGAGAAAGCTGTTGACGAGGAGCCTCTGATTTATGCCAATAAAATAGAGGCGAAGAATGCTTTTA
AGGAACTCCTAGAATCTGCACATGTAGAAGCTGATTGGACTTGGGAACAGGCGATGCGTGTAATCATCAATGATAAGCGATATGGAGCCCTCAAAACCCTTGGAGAGCGTAAACAAGCTTTCAATGAATATTTGGCACAGCGAAAGAAACACGAGGCTGAAGAACGGCGCATTCGGCAGAAGAGAGCAAGGGAAGATTTT
GTAATTATGTTGGAGGAGTGTAAAGAACTTACATCAGCGACGCGATGGAGTAAGGCCGTTACTCTCTTTGAAAACGATGCAAGGTTCCATGCTGTTGATCGAGGAAGAGAAAGGGAGGAGCTGTTTGAGAGCTATTTGATTGAGTTGGAGCGGAAGGAACGGGACAAGGCGCGAGAAGAGCGGAAAAGGAATCTTGTTGA
ATATAGAGCATATTTGGAGTCTTGTGATTTCATAAAGGCTAATACTCAATGGAGGAAAGTACAAGATCGGCTAGAAGATGATGAGAGATGCTCACGATTGGATAAAATAGATCGATTAGAAATTTTCCAGGAGTATATCCGTGATTTGGAGAAGGAAGAAGAAGAAGAAAGGAGGATTCAAAAGGAACAATTACGACGTA
AGGAGCGTAAGAACCGTGATGAATTTCGAAAGTTAATGGAGGAACACCGGGCATCTGGTATACTTACAGCTAAGACTCATTGGCGTGATTACTGTGGCAAGGTTAAGGATTACCCAGCTTATGTTGCTGTTGCATCGAACACATCTGGTACAACACCTAAAGAATTGTTTGAAGATGTTGCAGAGGAGCTAGAGAAGCAG
TATCACGAAGACAAAGCAAGGATAAAAGATGCCATGAAGGCAGGAAAGGTACGCTATTTGGGCTTATAATATAGTTAACAGAATGATGAGGTATTGTTTTTTAATTTTTCAATGTGGTCATTTCAGCTCACCATAACATCATCATGGACTTTCGACAAGTTCAAAGCTTCAATTGCTGAAGAATGTGATTTGGCTGTAGT
ATCTGAATCAAACCTAAAGGTTAGTGATAGTTATATCTCTAACTAGACTGAAGATATTTGTTATCTGAAGTACTGTTATTGATAGAAGATGAATATAAATTAATCATATCCTGATGTTACGTGAAGTGAAAATCTTAGCCCAAGGGGTTAGCTCAACTGGTTGTTTCCATTGTTGCTGGGCCATTTTTGTGCCAGCAGCT
GCCTGGTTGGAATCCCCTTGGGTGAGGTGCACTAGTCTATGCCGATGGGTTTAC
>TRINITY_DN130702_c2_g1_i1 from sample A1 / Example unspliced isoform:TATACTCCTAGGTTTAATAAATCCAATAGCGAGATGTATATGTAAAGACTGGAGAAGATTTAATAAACGCGGGTGTGTGTTGCGAGGAATAAATTCGGAGAGACAGGCTGCGATTGCACTGTTCTTCTCTCGCACATCGTTGTTCGTATTATTATGACCATTGAAGAAGAAATACAGGAGAAGGGTTTGGGGTTTGTTTA
TTATTCTTTCGGGCAAGCAATTGCCCCCAACCGATTAGAAAGAGGTCGCGAGATCGAGTCTCGCTAGACAAATATCTGCCTGCATTCGTCCCGCCCAGCTGATCATGGCCGCCGTTCCTCCTCAGACGCAACAGCAGCAACAACAAGCTGAAGCTGCCGCAATGACTCCGTGGATGAACGGGCCCAATACAGTAGCCACT
CCAGCAGTTTCTGGGCACCCATCTGGACCTCCTCAAACTCTCATGGCAGGAAATCCTTCATCCGGGCCGCTGgtaagcatggtctgattgttttttatcacattaaagctgcttttggttctacggacatcatcacatttgaattcttctcttgaattttctaaatgtatttgtagCCACCTCGTCCACCTGGCATGGTG
TCTTCCGGACCTCAAAACTTTGGACCTCCTCTGCCAATGCAATTTAGATCTGGAGTACCACAACAAACAGGTCAACAATTTATGCCTCCAAGTAGCCAACAGTTTCGGCCTATGGCTCAAGGTATACCGCCGCCAAACATTGGAACTTCTCAATCTGTTCAACCACAGCCTGTGCAGTATCCTCCACAAATGCAACATTT
GCCTCCACGTCCAGGGCAACAACAACAAACTCCGCCTTCATCTCAGGCTCCTTCTATGACATATCTTCAACAGCCAAGGCCAATGACAAGTGGGGCTCCTCCATCTCAGCAGCCTCAGCAATCTCAACAGCCTCTTAGTATGCCGCCTCCACCTGGTTTAGGTGGCATGGGATTGCCACCATCATCATCCTATACGTTTG
CTCCATCTACATATGGTCAGTCACAGAATTCATACAGTGTTAATCCACAATATCAAGCTGTTTCTCAGCCTCAACACATGACGCCGGTGCATTCTGGAACTCAGCAATGGGGATCTGCAAATCAAAATAGTGTTCCTGCATCTCAAGGAATGCAGACGGGCCAACAATCTGCTGTTGGTTTTGCTTCAGCTCCTGGAGCT
GTTGTACAACCTAGTAATTCCAACATACAAAGTTCTTCAGATTGGCAAGAACACACTGCTACAGATGGAAGAAGATATTATTTCAACAAGAAGACAAGGCAGTCAAGTTGGGAAAAGCCTCAAGAATTGATGACACCAATTGAGCGGGCGGATGCATCCACTGTTTGGAAAGAATTCACAACTCCAGAGGGGCGAAAGTA
CTATTACAACAAGGTCACCAAACAGTCCAAGTGGACTATTCCAGATGAACTCAAGATAGCACGAGAGCAGGCAGAAAAGCCAGCAGCTTCAGTTGGAAACTCTGAAGGATCGCTATCCACAGCCGCATCACCAGTTCCAGTTGCTGTCATGTCATCTCCATCTAAAGCATCACCAAATCTATCTGCTCCCAGCATATCTG
TATCTGCTACAGTCTTAGCATCAACAGGGACTCCGACAGTTGCTGCACCAGTTATGCCTCTTTTGCCCACAAACCCAGTTAGTGTTATGGCTTCTTTGACACCCACTATTTCTACATCTGCTGGAGCTGTCTCATCTGCAATGACCACATCTGTTCTCACTACTTCTCCCGCAATTGGTGTTGTGCCATCAATCACTGCA
GCTGCAATACCTCTTGCTAGTCCTGCTTCTTTAACACCAACTGCTGTGGCCCCCTCAACTAATGCAGTGACCACAAATGTAGCGGAAACTGCAAATGCTGCAACAGCGTCAATTGCTGATAAAACAAATGTTGTAGATTTAAAGGAAGGAGGACTTGATGAAGCTTCTGCACAGGATTTGGAGGAAGCTAAGAAAGCGAT
GCCTGTAACTGGAAAGGTTAATGTAACTCCCTTGTCAGAAGAGAAAGCTGTTGACGAGGAGCCTCTGATTTATGCCAATAAAATAGAGGCGAAGAATGCTTTTAAGGAACTCCTAGAATCTGCACATGTAGAAGCTGATTGGACTTGGGAACAGGCGATGCGTGTAATCATCAATGATAAGCGATATGGAGCCCTCAAAA
CCCTTGGAGAGCGTAAACAAGCTTTCAATGAATATTTGGCACAGCGAAAGAAACACGAGGCTGAAGAACGGCGCATTCGGCAGAAGAGAGCAAGGGAAGATTTTGTAATTATGTTGGAGGAGTGTAAAGAACTTACATCAGCGACGCGATGGAGTAAGGCCGTTACTCTCTTTGAAAACGATGCAAGGTTCCATGCTGTT
GATCGAGGAAGAGAAAGGGAGGAGCTGTTTGAGAGCTATTTGATTGAGTTGGAGCGGAAGGAACGGGACAAGGCGCGAGAAGAGCGGAAAAGGAATCTTGTTGAATATAGAGCATATTTGGAGTCTTGTGATTTCATAAAGGCTAATACTCAATGGAGGAAAGTACAAGATCGGCTAGAAGATGATGAGAGATGCTCACG
ATTGGATAAAATAGATCGATTAGAAATTTTCCAGGAGTATATCCGTGATTTGGAGAAGGAAGAAGAAGAAGAAAGGAGGATTCAAAAGGAACAATTACGACGTAAGGAGCGTAAGAACCGTGATGAATTTCGAAAGTTAATGGAGGAACACCGGGCATCTGGTATACTTACAGCTAAGACTCATTGGCGTGATTACTGTG
GCAAGGTTAAGGATTACCCAGCTTATGTTGCTGTTGCATCGAACACATCTGGTACAACACCTAAAGAATTGTTTGAAGATGTTGCAGAGGAGCTAGAGAAGCAGTATCACGAAGACAAAGCAAGGATAAAAGATGCCATGAAGGCAGGAAAGCTCACCATAACATCATCATGGACTTTCGACAAGTTCAAAGCTTCAATT
GCTGAAGAATGTGATTTGGCTGTAGTATCTGAATCAAACCTAAAGCTTGTTTTTGAAGAAGTGATAGAAAGGACAAGGGAAAAGGAAGAGAAGGAAGCAAAGAAAAGGCAAAGACTGGCAGATGACTTCACAGATTTACTCTATTCTGTAAAGGAAATAACTGCTTCCTCAAGATGGGAAGATTGCAAGTCTTTGCTTGA
AGATGCTCCCGAATACCGATCCATTAATGATGAGGTCTTCCAACGGGAGATATTCGAAGAGTACATTGCACACCTTCATGAAAAGCTGAAGGAGAAAGAACGCAAACGAGACGAGGAGAAGGCAAAGAAAGAGAAGGAAAAAGAGGAGAAAGAGAAGGAGAGAGAAAAACGGAAGGAGAAGGAGAAAGAGAAGGAGAAGG
AGAAGGAGAAAGAGAAGGAGAAGGAGAAGGAGAAAGAGAAGGAGAAGGAGAAAGAGGAGGAGGAAGAACCAAGTTCAAACCCCACCAAGCCACCTAGTACTATCAGCATTCCCGATCATTCAACAGAATCCCCCCACAACAACATGAAGCGATTTGGAGAGAGCTCCCCGTCACACACCTCGTTTGTTTTGCAGCACAAG
ACCGAAAACGTTAGGGATCTGTACACATTGGGCAGGAGACTGGGCCAAGGCCAGTTCGGTATAACGTATTTGTGTATTGAGAAGGGAACCGATAAGGCGTATGCCTGCAAATCTATTGCCAAGAGGAAGCTTCTGTCCATTGAGGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCATCATCTGGCGGGGCATCC
CAATGTGGTTACCATAAAGGGGGCGTACGAGGATGTGGCCTCCGTTCATCTGGTCATGGAGTTATGCGCTGGTGGGGAGCTGTTTGACAGGATCATTCAGAGGGGACATTACAGTGAGAGGAAGGCTGCTGAGCTCACCAGGACCATCGTGGGCGTGGTGGAGGCCTGCCATTCTCTGGGTGTTATGCACAGAGATTTGA
AGCCCGAGAACTTCTTGCTTTCCAGTACGGACGAGGATTCAGCCCTCAAGGCCACCGATTTTGGATTGTCAGTGTTCTTCAAGCCAGGTGAAACTTTTAGCGATGTAGTTGGAAGTCCGTACTATGTAGCCCCTGAAGTACTGTTGAAGAATTATGGTCCTGAAGCTGATATTTGGAGTGCTGGAGTCATTGTGTACATT
CTACTGAGTGGAGTTCCACCATTTTGGGGAGAGACAGAGAAGGGAATTTTTGATCAAGTTCTACATGCTGAACTTGACTTTGCATCAGACCCATGGCCTGGCATATCGGAGAATGCAAAGGACTTAATAAGAAAAATGCTTGATAGAAAACCCAAAAATAGACCAACAGCTCATGAAGTGCTTTGCGACCCTTGGATTCG
GGATGATGGGGTTGCACCTGACAGACCTCTTGATTCTGCAGTGCTCTCTCGGTTGAAACAATTCTCAGCAATGAACAAGATTAAAAAGATGGCTTTGCGTGTTATAGCAGACAGTCTCTCAGAAGATGAAATTGCTGGTCTTAAAGAGATGTTCAGGATGATTGATACAGACAACAGTGGTACAATTACCTTTGATGAAC
TGAAGGATGGGTTAAACAGAGTTGGTGCTACTAATCTTATGGAGTCAGAGATCCGAGAACTTATGGAGGCAGCTGATATAGACAACAGTGGTACCATAGATTATGGTGAATTCATTGCAGCTACATTGCATTTAAACAAGATGGAGCGGGAGGAGCATCTCTTTTCTGCCTTTTGTTATTTTGACAAAGATGGAAGTGGG
CAAATTACTATGGATGAACTTCAGCAAGCCTGCCAGGAATTTGGTATAGGTGATGCTGAGCTTGATGAAATGATCAAAGAAGTTGATCAAGATAATAATGGGAGCATTGATTACAATGAGTTTGTGGCAATGATGCGTAAAGGCAATGGTGGTATAGGCAGAAAAACGATGCGGAACAGCTTAGGACTAAGAGATGCCTT
AAAAATTGGTTAAGAAGTGTCCTGTAGAACTATTCGTACTCACAAATTCAGAGGGCATTCCATGCTCTGAGACTTTGCTTGATGTAATTCAATACTTTGCTATTTCTGTGCCCTATCGGATTATGAAAGATGCCTCAAAAGACTGCCAAGGTCCGTAAAAGAAATTTCACTTTGTTGATTACATGAAGCAGTGTTTCAAT
ATTCTTGGTTGAATTTAGAGTGCATTAAGTTGGATGCTGAGTCCAGTTTTATCTAATTGCAAAGAGAGGTAAACAGGTTTGTTGGTTTAAGCTGTTTATTGATATAAGGCTGGTTCAAAGTTGAGCTGTATATTTTTTCTGCACAAATATAGATGCTAAAGTTGTCATCCATGGAAGTTACTTTTATAAAATATGAGAAT
TTTCCTTTCTATCCTC
Intron 4 GTAACCTTGC ... TTTTTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.78 | 167 | 58 | 8 |
| A2 | 15.38 | 99 | 18 | 2 |
| A3 | 4.04 | 95 | 4 | 0 |
| A4 | 11.39 | 70 | 9 | 1 |
| A5 | 26.83 | 30 | 11 | 1 |
| A6 | 0 | 4 | 0 | 0 |
| A7 | 13.23 | 164 | 25 | 2 |
| A8 | 13.99 | 123 | 20 | 0 |
| A9 | 14.48 | 189 | 32 | 0 |
| A10 | 10.39 | 163.9 | 19 | 0 |
>TRINITY_DN130702_c2_g1_i7 from sample A1 / Example spliced isoformTATACTCCTAGGTTTAATAAATCCAATAGCGAGATGTATATGTAAAGACTGGAGAAGATTTAATAAACGCGGGTGTGTGTTGCGAGGAATAAATTCGGAGAGACAGGCTGCGATTGCACTGTTCTTCTCTCGCACATCGTTGTTCGTATTATTATGACCATTGAAGAAGAAATACAGGAGAAGGGTTTGGGGTTTGTTTA
TTATTCTTTCGGGCAAGCAATTGCCCCCAACCGATTAGAAAGAGGTCGCGAGATCGAGTCTCGCTAGACAAATATCTGCCTGCATTCGTCCCGCCCAGCTGATCATGGCCGCCGTTCCTCCTCAGACGCAACAGCAGCAACAACAAGCTGAAGCTGCCGCAATGACTCCGTGGATGAACGGGCCCAATACAGTAGCCACT
CCAGCAGTTTCTGGGCACCCATCTGGACCTCCTCAAACTCTCATGGCAGGAAATCCTTCATCCGGGCCGCTGCCACCTCGTCCACCTGGCATGGTGTCTTCCGGACCTCAAAACTTTGGACCTCCTCTGCCAATGCAATTTAGATCTGGAGTACCACAACAAACAGGTCAACAATTTATGCCTCCAAGTAGCCAACAGTT
TCGGCCTATGGCTCAAGGTATACCGCCGCCAAACATTGGAACTTCTCAATCTGTTCAACCACAGCCTGTGCAGTATCCTCCACAAATGCAACATTTGCCTCCACGTCCAGGGCAACAACAACAAACTCCGCCTTCATCTCAGGCTCCTTCTATGACATATCTTCAACAGCCAAGGCCAATGACAAGTGGGGCTCCTCCAT
CTCAGCAGCCTCAGCAATCTCAACAGCCTCTTAGTATGCCGCCTCCACCTGGTTTAGGTGGCATGGGATTGCCACCATCATCATCCTATACGTTTGCTCCATCTACATATGGTCAGTCACAGAATTCATACAGTGTTAATCCACAATATCAAGCTGTTTCTCAGCCTCAACACATGACGCCGGTGCATTCTGGAACTCAG
CAATGGGGATCTGCAAATCAAAATAGTGTTCCTGCATCTCAAGGAATGCAGACGGGCCAACAATCTGCTGTTGGTTTTGCTTCAGCTCCTGGAGCTGTTGTACAACCTAGTAATTCCAACATACAAAGTTCTTCAGATTGGCAAGAACACACTGCTACAGATGGAAGAAGATATTATTTCAACAAGAAGACAAGGCAGTC
AAGTTGGGAAAAGCCTCAAGAATTGATGACACCAATTGAGCGGGCGGATGCATCCACTGTTTGGAAAGAATTCACAACTCCAGAGGGGCGAAAGTACTATTACAACAAGGTCACCAAACAGTCCAAGTGGACTATTCCAGATGAACTCAAGATAGCACGAGAGCAGGCAGAAAAGCCAGCAGCTTCAGTTGGAAACTCTG
AAGGATCGCTATCCACAGCCGCATCACCAGTTCCAGTTGCTGTCATGTCATCTCCATCTAAAGCATCACCAAATCTATCTGCTCCCAGCATATCTGTATCTGCTACAGTCTTAGCATCAACAGGGACTCCGACAGTTGCTGCACCAGTTATGCCTCTTTTGCCCACAAACCCAGTTAGTGTTATGGCTTCTTTGACACCC
ACTATTTCTACATCTGCTGGAGCTGTCTCATCTGCAATGACCACATCTGTTCTCACTACTTCTCCCGCAATTGGTGTTGTGCCATCAATCACTGCAGCTGCAATACCTCTTGCTAGTCCTGCTTCTTTAACACCAACTGCTGTGGCCCCCTCAACTAATGCAGTGACCACAAATGTAGCGGAAACTGCAAATGCTGCAAC
AGCGTCAATTGCTGATAAAACAAATGTTGTAGATTTAAAGGAAGGAGGACTTGATGAAGCTTCTGCACAGGATTTGGAGGAAGCTAAGAAAGCGATGCCTGTAACTGGAAAGGTTAATGTAACTCCCTTGTCAGAAGAGAAAGCTGTTGACGAGGAGCCTCTGATTTATGCCAATAAAATAGAGGCGAAGAATGCTTTTA
AGGAACTCCTAGAATCTGCACATGTAGAAGCTGATTGGACTTGGGAACAGGCGATGCGTGTAATCATCAATGATAAGCGATATGGAGCCCTCAAAACCCTTGGAGAGCGTAAACAAGCTTTCAATGAATATTTGGCACAGCGAAAGAAACACGAGGCTGAAGAACGGCGCATTCGGCAGAAGAGAGCAAGGGAAGATTTT
GTAATTATGTTGGAGGAGTGTAAAGAACTTACATCAGCGACGCGATGGAGTAAGGCCGTTACTCTCTTTGAAAACGATGCAAGGTTCCATGCTGTTGATCGAGGAAGAGAAAGGGAGGAGCTGTTTGAGAGCTATTTGATTGAGTTGGAGCGGAAGGAACGGGACAAGGCGCGAGAAGAGCGGAAAAGGAATCTTGTTGA
ATATAGAGCATATTTGGAGTCTTGTGATTTCATAAAGGCTAATACTCAATGGAGGAAAGTACAAGATCGGCTAGAAGATGATGAGAGATGCTCACGATTGGATAAAATAGATCGATTAGAAATTTTCCAGGAGTATATCCGTGATTTGGAGAAGGAAGAAGAAGAAGAAAGGAGGATTCAAAAGGAACAATTACGACGTA
AGGAGCGTAAGAACCGTGATGAATTTCGAAAGTTAATGGAGGAACACCGGGCATCTGGTATACTTACAGCTAAGACTCATTGGCGTGATTACTGTGGCAAGGTTAAGGATTACCCAGCTTATGTTGCTGTTGCATCGAACACATCTGGTACAACACCTAAAGAATTGTTTGAAGATGTTGCAGAGGAGCTAGAGAAGCAG
TATCACGAAGACAAAGCAAGGATAAAAGATGCCATGAAGGCAGGAAAGGTACGCTATTTGGGCTTATAATATAGTTAACAGAATGATGAGGTATTGTTTTTTAATTTTTCAATGTGGTCATTTCAGCTCACCATAACATCATCATGGACTTTCGACAAGTTCAAAGCTTCAATTGCTGAAGAATGTGATTTGGCTGTAGT
ATCTGAATCAAACCTAAAGGTTAGTGATAGTTATATCTCTAACTAGACTGAAGATATTTGTTATCTGAAGTACTGTTATTGATAGAAGATGAATATAAATTAATCATATCCTGATGTTACGTGAAGTGAAAATCTTAGCCCAAGGGGTTAGCTCAACTGGTTGTTTCCATTGTTGCTGGGCCATTTTTGTGCCAGCAGCT
GCCTGGTTGGAATCCCCTTGGGTGAGGTGCACTAGTCTATGCCGATGGGTTTAC
>TRINITY_DN130702_c2_g1_i12 from sample A1 / Example unspliced isoform:CACAACTCCAGAGGGGCGAAAGTGAGTAAATATATTTCTTTAATAAGACCATTGTTGATTTGATGTAAGTCGAATTGAAAGCTTTTCCGTATTTATCTCAAATTCCCATCTCTTTTGTTTACACAGGTACTATTACAACAAGGTCACCAAACAGTCCAAGTGGACTATTCCAGATGAACTCAAGATAGCACGAGAGCAGG
CAGAAAAGCCAGCAGCTTCAGTTGGAAACTCTGAAGGATCGCTATCCACAGCCGCATCACCAGTTCCAGTTGCTGTCATGTCATCTCCATCTAAAGCATCACCAAATCTATCTGCTCCCAGCATATCTGTATCTGCTACAGTCTTAGCATCAACAGGGACTCCGACAGTTGCTGCACCAGTTATGCCTCTTTTGCCCACA
AACCCAGTTAGTGTTATGGCTTCTTTGACACCCACTATTTCTACATCTGCTGGAGCTGTCTCATCTGCAATGACCACATCTGTTCTCACTACTTCTCCCGCAATTGGTGTTGTGCCATCAATCACTGCAGCTGCAATACCTCTTGCTAGTCCTGCTTCTTTAACACCAACTGCTGTGGCCCCCTCAACTAATGCAGTGAC
CACAAATGTAGCGGAAACTGCAAATGCTGCAACAGCGTAAGGAAGATATTAACTATATTCTATCAAAGGGATGATGGGGTTAGTTGATTGCCTCCTACTGATCTTCTGTTCTTTTCTGTCATTTACAGGTCAATTGCTGATAAAACAAATGTTGTAGATTTAAAGGAAGGAGGACTTGATGAAGCTTCTGCACAGGATTT
GGAGGAAGCTAAGAAAGCGATGCCTGTAACTGGAAAGGTTAATGTAACTCCCTTGTCAGAAGAGAAAGCTGTTGACGAGGAGCCTCTGATTTATGCCAATAAAATAGAGGCGAAGAATGCTTTTAAGGAACTCCTAGAATCTGCACATGTAGAAGCTGATTGGACTTGGGAACAGGCGATGCGTGTAATCATCAATGATA
AGCGATATGGAGCCCTCAAAACCCTTGGAGAGCGTAAACAAGCTTTCAATGAATATTTGGCACAGCGAAAGAAACACGAGGCTGAAGAACGGCGCATTCGGCAGAAGAGAGCAAGGGAAGATTTTGTAATTATGTTGGAGgtaaccttgcatcttcatttgaaattctttgagcttgctacacttctggaatctacctat
aaaaattaaactgttctcgcttattttatcatggacaactgaatattcaaggattaaaattattttcaataataaaatttatctttttttgtaatactgttgtaacaattgtatttttctcagGAGTGTAAAGAACTTACATCAGCGACGCGATGGAGGTAGGTTCATTCATATATTGACTCAGACTGTTTATGCCCAGC
CAAGTACCATTTGAATATATGTTCAACCTCTAATTAATGTTTTTAAAAGATCTAGAATAATTGAGTTCCCATAACTATTTTTTGTATTTTCTTATAGATGCAGTATAGTTGAGAGTGCTTTTACCTAACTGTTATTATTCATTTTGAGCAGTAAGGCCGTTACTCTCTTTGAAAACGATGCAAGGTTCCATGCTGTTGAT
CGAGGAAGAGAAAGGGAGGAGCTGTTTGAGAGCTATTTGATTGAGTTGGAGCGGAAGGTATGAACACACTTACTTTATTAAGCCATCTTTCAGTTAATTAGTTAAATGGGAGCTGTATTTTACATACGTATGTTGGAAAAGCAACTTTTATTCAAAATTCATGGATGAATATTATATATATTTGTCAAATTTAGCTAGTA
GAACATAGCTACATGCACTTAATTTAAGGCACAGTTGTTGTCTAGATAATGATGCAAAGCATCATAATGTTGATGAACAGCTCTTGCCAACATAGGCAAGAGGGCCCTATGTTATACCTTGCTCCAAGATCTGGAGTACCCTCAATCCATTGAGCTACAGCTTCAATTTTACAAAGATTAAATTGTAGAAAGTCACAAAT
TTTGCAATACATTGTTATTTTAGTGTATTTTGGCTTCCTATTTCAAATACATAGATGCTTTCGTCTCCCATACCAACAAAATTTTCCAAGCTCTATGATTGACATATTGATGAAGAACAAACATAAATTCTGAAAACATTACCTTGTGGGCACCATTTCTCCCACTTGGAAAACACTTGCCAGCAAAATCAATTTCAATC
CAGTACCGTGGCTGCCACGTGGACACAATGTCTCATCTCCAGCATTAACACTGTCTCCATGCCAACAATTCTTTCCTGACTATATGGCTAACACGGCAAACCCAGCTCTATGACTGACTTGACAACGCCTCATCTCCTTGACAGTTTCCTAGGAATTTTACTTCGTGCTGTGCCTCTCTCCTTAGCTCTTGTGTCTGGCT
GCCATTGACCCAAGTAAATGGTTGACTCAATATCTATCTTCTGTGATTATTAATGTCATCTGGGCACCAACTTGCATGTCGGTTGTTCCACATGACTGCTCTGTGAATTGTTGCCTGTGATACCCTCTTGCAAAACTCAATTTTATGCAACTTTCATTGACAATATGAGTTGATACAAACTCTGTTGATGTCAAAACTAT
ATTTTTTTTAGGAGATAACCTTTGGTACATTCAAAGATAAATATTCCATTCATGTTTTCTGCCTGTTGGAACACTCGTGTCAAAGGACAGAGAGTGAGAAATGACAAATAACAAAAAGATGATCAACGGTCTCATTTCCCAGACCCCCTTATAGAGTACACACCTGCTTGGCCTATTCCAATTTCTTTTCTGGCAATTGG
CCCAAGTCAGAATCTGTGAGCCTTGTAAAGCTTTGTGCATGCAGCTTCTGTATCAAACCTGGTCAAAGCGTATAATTACCACTGCAAACAATCCAGGGATCTTCTCCCAATCTTAATTTATAGCCTCTTCCAGTCCTCCAGGTCTCCAAGCCACCTAAAGTCAATGATTGGAAAGGATTTGAGTAGCCCTTTCCTTACTA
GTGAAGCTCTTTCAAAGATTCCTTTTTTTTTTTTTCTGATCCCATTTTCAATGTTGTCATCTCTTAGATACTTACTCTTGATAACTTTAATCCATAAACGATCAATAAAGAGACTCTTTGTTGCTAGTGCCTGACTAAAGATATGAATGTTCTTTAGTCCTCATCTCCGGTTTCTTTTGTTCTAGTTATTTTTGTCCATT
TTATAAGAAGAGGGGAATACCTTCAGTTTCTTTCTTCCCAGACCAAAAAGGCTAAAACAATTTTACTTATCTTGTCTAGTATACCCTTGGGGATATGAGCAATGAATAGCCAGTAAACAGGTATACTTTCTGGAGCTGACTCAACTAACACCAATCTACCACCTTGTGACAGCCATCTAAAAGACCAATAGGGCACCCTA
GCATTGTATAAACATAACCACGCAGCAAATCTGTAATCATTTGGTTTTATTTTAAAATCCAGGTATTTTACTTCTTGGTCCAGAGAAGCAGAAGTCAGAGTAAAGACTTGGTAAACCTGTTCTTCAATTCTGAACTCAATCCATTGTAAAGCATACAAGACTTACCTGTAGCTACACAACAAGTATCCAAGAGTCTTATA
TTGTTTCATTTTCCTTAAAGTTCCTTGCCCAAAAATCAAGTTTTAATCAACAAATAACAAGTGAGTAATGTACAGTTACACAGAACCTGCTACTCTTATGCCTCTGATAAAGCCCTCTCTTCTGGCTTCCATGATCAGCCT
Intron 5 GTATGAGTAG ... CCTTGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 54 | 6 | 27 |
| A2 | 30.23 | 30 | 5 | 13 |
| A3 | 26.98 | 46 | 7 | 17 |
| A4 | 27.78 | 39 | 3 | 15 |
| A5 | 33.33 | 16 | 3 | 8 |
| A6 | 28.57 | 5 | 5 | 2 |
| A7 | 18.18 | 36 | 4 | 8 |
| A8 | 33.33 | 24 | 4 | 12 |
| A9 | 14.89 | 40 | 0 | 7 |
| A10 | 23.73 | 45 | 1 | 14 |
>TRINITY_DN130702_c2_g1_i7 from sample A1 / Example spliced isoformTATACTCCTAGGTTTAATAAATCCAATAGCGAGATGTATATGTAAAGACTGGAGAAGATTTAATAAACGCGGGTGTGTGTTGCGAGGAATAAATTCGGAGAGACAGGCTGCGATTGCACTGTTCTTCTCTCGCACATCGTTGTTCGTATTATTATGACCATTGAAGAAGAAATACAGGAGAAGGGTTTGGGGTTTGTTTA
TTATTCTTTCGGGCAAGCAATTGCCCCCAACCGATTAGAAAGAGGTCGCGAGATCGAGTCTCGCTAGACAAATATCTGCCTGCATTCGTCCCGCCCAGCTGATCATGGCCGCCGTTCCTCCTCAGACGCAACAGCAGCAACAACAAGCTGAAGCTGCCGCAATGACTCCGTGGATGAACGGGCCCAATACAGTAGCCACT
CCAGCAGTTTCTGGGCACCCATCTGGACCTCCTCAAACTCTCATGGCAGGAAATCCTTCATCCGGGCCGCTGCCACCTCGTCCACCTGGCATGGTGTCTTCCGGACCTCAAAACTTTGGACCTCCTCTGCCAATGCAATTTAGATCTGGAGTACCACAACAAACAGGTCAACAATTTATGCCTCCAAGTAGCCAACAGTT
TCGGCCTATGGCTCAAGGTATACCGCCGCCAAACATTGGAACTTCTCAATCTGTTCAACCACAGCCTGTGCAGTATCCTCCACAAATGCAACATTTGCCTCCACGTCCAGGGCAACAACAACAAACTCCGCCTTCATCTCAGGCTCCTTCTATGACATATCTTCAACAGCCAAGGCCAATGACAAGTGGGGCTCCTCCAT
CTCAGCAGCCTCAGCAATCTCAACAGCCTCTTAGTATGCCGCCTCCACCTGGTTTAGGTGGCATGGGATTGCCACCATCATCATCCTATACGTTTGCTCCATCTACATATGGTCAGTCACAGAATTCATACAGTGTTAATCCACAATATCAAGCTGTTTCTCAGCCTCAACACATGACGCCGGTGCATTCTGGAACTCAG
CAATGGGGATCTGCAAATCAAAATAGTGTTCCTGCATCTCAAGGAATGCAGACGGGCCAACAATCTGCTGTTGGTTTTGCTTCAGCTCCTGGAGCTGTTGTACAACCTAGTAATTCCAACATACAAAGTTCTTCAGATTGGCAAGAACACACTGCTACAGATGGAAGAAGATATTATTTCAACAAGAAGACAAGGCAGTC
AAGTTGGGAAAAGCCTCAAGAATTGATGACACCAATTGAGCGGGCGGATGCATCCACTGTTTGGAAAGAATTCACAACTCCAGAGGGGCGAAAGTACTATTACAACAAGGTCACCAAACAGTCCAAGTGGACTATTCCAGATGAACTCAAGATAGCACGAGAGCAGGCAGAAAAGCCAGCAGCTTCAGTTGGAAACTCTG
AAGGATCGCTATCCACAGCCGCATCACCAGTTCCAGTTGCTGTCATGTCATCTCCATCTAAAGCATCACCAAATCTATCTGCTCCCAGCATATCTGTATCTGCTACAGTCTTAGCATCAACAGGGACTCCGACAGTTGCTGCACCAGTTATGCCTCTTTTGCCCACAAACCCAGTTAGTGTTATGGCTTCTTTGACACCC
ACTATTTCTACATCTGCTGGAGCTGTCTCATCTGCAATGACCACATCTGTTCTCACTACTTCTCCCGCAATTGGTGTTGTGCCATCAATCACTGCAGCTGCAATACCTCTTGCTAGTCCTGCTTCTTTAACACCAACTGCTGTGGCCCCCTCAACTAATGCAGTGACCACAAATGTAGCGGAAACTGCAAATGCTGCAAC
AGCGTCAATTGCTGATAAAACAAATGTTGTAGATTTAAAGGAAGGAGGACTTGATGAAGCTTCTGCACAGGATTTGGAGGAAGCTAAGAAAGCGATGCCTGTAACTGGAAAGGTTAATGTAACTCCCTTGTCAGAAGAGAAAGCTGTTGACGAGGAGCCTCTGATTTATGCCAATAAAATAGAGGCGAAGAATGCTTTTA
AGGAACTCCTAGAATCTGCACATGTAGAAGCTGATTGGACTTGGGAACAGGCGATGCGTGTAATCATCAATGATAAGCGATATGGAGCCCTCAAAACCCTTGGAGAGCGTAAACAAGCTTTCAATGAATATTTGGCACAGCGAAAGAAACACGAGGCTGAAGAACGGCGCATTCGGCAGAAGAGAGCAAGGGAAGATTTT
GTAATTATGTTGGAGGAGTGTAAAGAACTTACATCAGCGACGCGATGGAGTAAGGCCGTTACTCTCTTTGAAAACGATGCAAGGTTCCATGCTGTTGATCGAGGAAGAGAAAGGGAGGAGCTGTTTGAGAGCTATTTGATTGAGTTGGAGCGGAAGGAACGGGACAAGGCGCGAGAAGAGCGGAAAAGGAATCTTGTTGA
ATATAGAGCATATTTGGAGTCTTGTGATTTCATAAAGGCTAATACTCAATGGAGGAAAGTACAAGATCGGCTAGAAGATGATGAGAGATGCTCACGATTGGATAAAATAGATCGATTAGAAATTTTCCAGGAGTATATCCGTGATTTGGAGAAGGAAGAAGAAGAAGAAAGGAGGATTCAAAAGGAACAATTACGACGTA
AGGAGCGTAAGAACCGTGATGAATTTCGAAAGTTAATGGAGGAACACCGGGCATCTGGTATACTTACAGCTAAGACTCATTGGCGTGATTACTGTGGCAAGGTTAAGGATTACCCAGCTTATGTTGCTGTTGCATCGAACACATCTGGTACAACACCTAAAGAATTGTTTGAAGATGTTGCAGAGGAGCTAGAGAAGCAG
TATCACGAAGACAAAGCAAGGATAAAAGATGCCATGAAGGCAGGAAAGGTACGCTATTTGGGCTTATAATATAGTTAACAGAATGATGAGGTATTGTTTTTTAATTTTTCAATGTGGTCATTTCAGCTCACCATAACATCATCATGGACTTTCGACAAGTTCAAAGCTTCAATTGCTGAAGAATGTGATTTGGCTGTAGT
ATCTGAATCAAACCTAAAGGTTAGTGATAGTTATATCTCTAACTAGACTGAAGATATTTGTTATCTGAAGTACTGTTATTGATAGAAGATGAATATAAATTAATCATATCCTGATGTTACGTGAAGTGAAAATCTTAGCCCAAGGGGTTAGCTCAACTGGTTGTTTCCATTGTTGCTGGGCCATTTTTGTGCCAGCAGCT
GCCTGGTTGGAATCCCCTTGGGTGAGGTGCACTAGTCTATGCCGATGGGTTTAC
>TRINITY_DN130702_c2_g1_i17 from sample A1 / Example unspliced isoform:CTTTCAAAGCAATTCGGTTTTCTACATTTGGTAACATGGAATTGCTGTAATTACTGTATTTGTAGTCATCAGAGTGGTTGATTGTTGAAACTGACTTTTCATTTCTTCTGTATTTAAAAGGGAGCTGTTGTACAACCTAGTAATTCCAACATACAAAGTTCTTCAGATTGGCAAGAACACACTGCTACAGATGGAAGAAG
gtatgagtagcggtaattcaaaggtgtattatttatttttatgtgtaactttttagtcagaagtgacagaacagggttgatgtcctgagtagcaggatgatggatgcatgtagttgtgatcttgttgtactgctcagtgctcacatgttgaatttctatttagttaacaccttcaactgaaatactacaagcagtagaat
catttattttatgcatcttctgaccttgtgtagATATTATTTCAACAAGAAGACAAGGCAGTCAAGTTGGGAAAAGCCTCAAGAATTGATGACACCAATTGAGCGGGCGGATGCATCCACTGTTTGGAAAGAATTCACAACTCCAGAGGGGCGAAAGTACTATTACAACAAGGTCACCAAACAGTCCAAGTGGACTATTC
CAGATGAACTCAAGATAGCACGAGAGCAGGCAGAAAAGCCAGCAGCTTCAGTTGGAAACTCTGAAGGATCGCTATCCACAGCCGCATCACCAGTTCCAGTTGCTGTCATGTCATCTCCATCTAAAGCATCACCAAATCTATCTGCTCCCAGCATATCTGTATCTGCTACAGTCTTAGCATCAACAGGGACTCCGACAGTT
GCTGCACCAGTTATGCCTCTTTTGCCCACAAACCCAGTTAGTGTTATGGCTTCTTTGACACCCACTATTTCTACATCTGCTGGAGCTGTCTCATCTGCAATGACCACATCTGTTCTCACTACTTCTCCCGCAATTGGTGTTGTGCCATCAATCACTGCAGCTGCAATACCTCTTGCTAGTCCTGCTTCTTTAACACCAAC
TGCTGTGGCCCCCTCAACTAATGCAGTGACCACAAATGTAGCGGAAACTGCAAATGCTGCAACAGCGTCAATTGCTGATAAAACAAATGTTGTAGATTTAAAGGAAGGAGGACTTGATGAAGCTTCTGCACAGGATTTGGAGGAAGCTAAGAAAGCGATGCCTGTAACTGGAAAGGTTAATGTAACTCCCTTGTCAGAAG
AGAAAGCTGTTGACGAGGAGCCTCTGATTTATGCCAATAAAATAGAGGCGAAGAATGCTTTTAAGGAACTCCTAGAATCTGCACATGTAGAAGCTGATTGGACTTGGGAACAGGCGATGCGTGTAATCATCAATGATAAGCGATATGGAGCCCTCAAAACCCTTGGAGAGCGTAAACAAGCTTTCAATGAATATTTGGCA
CAGCGAAAGAAACACGAGGCTGAAGAACGGCGCATTCGGCAGAAGAGAGCAAGGGAAGATTTTGTAATTATGTTGGAGGAGTGTAAAGAACTTACATCAGCGACGCGATGGAGTAAGGCCGTTACTCTCTTTGAAAACGATGCAAGGTTCCATGCTGTTGATCGAGGAAGAGAAAGGGAGGAGCTGTTTGAGAGCTATTT
GATTGAGTTGGAGCGGAAGGAACGGGACAAGGCGCGAGAAGAGCGGAAAAGGAATCTTGTTGAATATAGAGCATATTTGGAGTCTTGTGATTTCATAAAGGCTAATACTCAATGGAGGAAAGTACAAGATCGGCTAGAAGATGATGAGAGATGCTCACGATTGGATAAAATAGATCGATTAGAAATTTTCCAGGAGTATA
TCCGTGATTTGGAGAAGGAAGAAGAAGAAGAAAGGAGGATTCAAAAGGAACAATTACGACGTAAGGAGCGTAAGAACCGTGATGAATTTCGAAAGTTAATGGAGGAACACCGGGCATCTGGTATACTTACAGCTAAGACTCATTGGCGTGATTACTGTGGCAAGGTTAAGGATTACCCAGCTTATGTTGCTGTTGCATCG
AACACATCTGGTACAACACCTAAAGAATTGTTTGAAGATGTTGCAGAGGAGCTAGAGAAGCAGTATCACGAAGACAAAGCAAGGATAAAAGATGCCATGAAGGCAGGAAAGCTCACCATAACATCATCATGGACTTTCGACAAGTTCAAAGCTTCAATTGCTGAAGAATGTGATTTGGCTGTAGTATCTGAATCAAACCT
AAAGCTTGTTTTTGAAGAAGTGATAGAAAGGACAAGGGAAAAGGAAGAGAAGGAAGCAAAGAAAAGGCAAAGACTGGCAGATGACTTCACAGATTTACTCTATTCTGTAAAGGAAATAACTGCTTCCTCAAGATGGGAAGATTGCAAGTCTTTGCTTGAAGATGCTCCCGAATACCGATCCATTAATGATGAGGTCTTCC
AACGGGAGATATTCGAAGAGTACATTGCACACCTTCATGAAAAGCTGAAGGAGAAAGAACGCAAACGAGACGAGGAGAAGGCAAAGAAAGAGAAGGAAAAAGAGGAGAAAGAGAAGGAGAGAGAAAAACGGAAGGAGAAGGAGAAAGAGAAGGAGAAGGAGAAGGAGAAAGAGAAGGAGAAGGAGAAGGAGAAAGAGAAG
GAGAAGGAGAAAGAGGAGGAGGAAGAACCAAGTTCAAACCCCACCAAGCCACCTAGTACTATCAGCATTCCCGATCATTCAACAGAATCCCCCCACAACAACATGAAGCGATTTGGAGAGAGCTCCCCGTCACACACCTCGTTTGTTTTGCAGCACAAGACCGAAAACGTTAGGGATCTGTACACATTGGGCAGGAGACT
GGGCCAAGGCCAGTTCGGTATAACGTATTTGTGTATTGAGAAGGGAACCGATAAGGCGTATGCCTGCAAATCTATTGCCAAGAGGAAGCTTCTGTCCATTGAGGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCATCATCTGGCGGGGCATCCCAATGTGGTTACCATAAAGGGGGCGTACGAGGATGTGGCCT
CCGTTCATCTGGTCATGGAGTTATGCGCTGGTGGGGAGCTGTTTGACAGGATCATTCAGAGGGGACATTACAGTGAGAGGAAGGCTGCTGAGCTCACCAGGACCATCGTGGGCGTGGTGGAGGCCTGCCATTCTCTGGGTGTTATGCACAGAGATTTGAAGCCCGAGAACTTCTTGCTTTCCAGTACGGACGAGGATTCA
GCCCTCAAGGCCACCGATTTTGGATTGTCAGTGTTCTTCAAGCCAGGTGAAACTTTTAGCGATGTAGTTGGAAGTCCGTACTATGTAGCCCCTGAAGTACTGTTGAAGAATTATGGTCCTGAAGCTGATATTTGGAGTGCTGGAGTCATTGTGTACATTCTACTGAGTGGAGTTCCACCATTTTGGGGAGAGACAGAGAA
GGGAATTTTTGATCAAGTTCTACATGCTGAACTTGACTTTGCATCAGACCCATGGCCTGGCATATCGGAGAATGCAAAGGACTTAATAAGAAAAATGCTTGATAGAAAACCCAAAAATAGACCAACAGCTCATGAAGTGCTTTGCGACCCTTGGATTCGGGATGATGGGGTTGCACCTGACAGACCTCTTGATTCTGCAG
TGCTCTCTCGGTTGAAACAATTCTCAGCAATGAACAAGATTAAAAAGATGGCTTTGCGTGTTATAGCAGACAGTCTCTCAGAAGATGAAATTGCTGGTCTTAAAGAGATGTTCAGGATGATTGATACAGACAACAGTGGTACAATTACCTTTGATGAACTGAAGGATGGGTTAAACAGAGTTGGTGCTACTAATCTTATG
GAGTCAGAGATCCGAGAACTTATGGAGGCAGCTGATATAGACAACAGTGGTACCATAGATTATGGTGAATTCATTGCAGCTACATTGCATTTAAACAAGATGGAGCGGGAGGAGCATCTCTTTTCTGCCTTTTGTTATTTTGACAAAGATGGAAGTGGGCAAATTACTATGGATGAACTTCAGCAAGCCTGCCAGGAATT
TGGTATAGGTGATGCTGAGCTTGATGAAATGATCAAAGAAGTTGATCAAGATAATAATGGGAGCATTGATTACAATGAGTTTGTGGCAATGATGCGTAAAGGCAATGGTGGTATAGGCAGAAAAACGATGCGGAACAGCTTAGGACTAAGAGATGCCTTAAAAATTGGTTAAGAAGTGTCCTGTAGAACTATTCGTACTC
ACAAATTCAGAGGGCATTCCATGCTCTGAGACTTTGCTTGATGTAATTCAATACTTTGCTATTTCTGTGCCCTATCGGATTATGAAAGATGCCTCAAAAGACTGCCAAGGTCCGTAAAAGAAATTTCACTTTGTTGATTACATGAAGCAGTGTTTCAATATTCTTGGTTGAATTTAGAGTGCATTAAGTTGGATGCTGAG
TCCAGTTTTATCTAATTGCAAAGAGAGGTAAACAGGTTTGTTGGTTTAAGCTGTTTATTGATATAAGGCTGGTTCAAAGTTGAGCTGTATATTTTTTCTGCACAAATATAGATGCTAAAGTTGTCATCCATGGAAGTTACTTTTATAAAATATGAGAATTTTCCTTTCTATCCTC
Intron 6 GTACGCTATT ... GTCATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.49 | 111 | 36 | 9 |
| A2 | 36.43 | 82 | 47 | 3 |
| A3 | 38.14 | 73 | 45 | 6.5 |
| A4 | 29.21 | 63 | 26 | 0.5 |
| A5 | 36.54 | 33 | 19 | 3 |
| A6 | 41.67 | 7 | 5 | 3 |
| A7 | 24.65 | 162 | 53 | 1 |
| A8 | 20.35 | 225 | 57.5 | 0 |
| A9 | 24.72 | 204 | 67 | 2.5 |
| A10 | 25.68 | 165 | 57 | 0 |
>TRINITY_DN130702_c2_g1_i1 from sample A1 / Example spliced isoformTATACTCCTAGGTTTAATAAATCCAATAGCGAGATGTATATGTAAAGACTGGAGAAGATTTAATAAACGCGGGTGTGTGTTGCGAGGAATAAATTCGGAGAGACAGGCTGCGATTGCACTGTTCTTCTCTCGCACATCGTTGTTCGTATTATTATGACCATTGAAGAAGAAATACAGGAGAAGGGTTTGGGGTTTGTTTA
TTATTCTTTCGGGCAAGCAATTGCCCCCAACCGATTAGAAAGAGGTCGCGAGATCGAGTCTCGCTAGACAAATATCTGCCTGCATTCGTCCCGCCCAGCTGATCATGGCCGCCGTTCCTCCTCAGACGCAACAGCAGCAACAACAAGCTGAAGCTGCCGCAATGACTCCGTGGATGAACGGGCCCAATACAGTAGCCACT
CCAGCAGTTTCTGGGCACCCATCTGGACCTCCTCAAACTCTCATGGCAGGAAATCCTTCATCCGGGCCGCTGGTAAGCATGGTCTGATTGTTTTTTATCACATTAAAGCTGCTTTTGGTTCTACGGACATCATCACATTTGAATTCTTCTCTTGAATTTTCTAAATGTATTTGTAGCCACCTCGTCCACCTGGCATGGTG
TCTTCCGGACCTCAAAACTTTGGACCTCCTCTGCCAATGCAATTTAGATCTGGAGTACCACAACAAACAGGTCAACAATTTATGCCTCCAAGTAGCCAACAGTTTCGGCCTATGGCTCAAGGTATACCGCCGCCAAACATTGGAACTTCTCAATCTGTTCAACCACAGCCTGTGCAGTATCCTCCACAAATGCAACATTT
GCCTCCACGTCCAGGGCAACAACAACAAACTCCGCCTTCATCTCAGGCTCCTTCTATGACATATCTTCAACAGCCAAGGCCAATGACAAGTGGGGCTCCTCCATCTCAGCAGCCTCAGCAATCTCAACAGCCTCTTAGTATGCCGCCTCCACCTGGTTTAGGTGGCATGGGATTGCCACCATCATCATCCTATACGTTTG
CTCCATCTACATATGGTCAGTCACAGAATTCATACAGTGTTAATCCACAATATCAAGCTGTTTCTCAGCCTCAACACATGACGCCGGTGCATTCTGGAACTCAGCAATGGGGATCTGCAAATCAAAATAGTGTTCCTGCATCTCAAGGAATGCAGACGGGCCAACAATCTGCTGTTGGTTTTGCTTCAGCTCCTGGAGCT
GTTGTACAACCTAGTAATTCCAACATACAAAGTTCTTCAGATTGGCAAGAACACACTGCTACAGATGGAAGAAGATATTATTTCAACAAGAAGACAAGGCAGTCAAGTTGGGAAAAGCCTCAAGAATTGATGACACCAATTGAGCGGGCGGATGCATCCACTGTTTGGAAAGAATTCACAACTCCAGAGGGGCGAAAGTA
CTATTACAACAAGGTCACCAAACAGTCCAAGTGGACTATTCCAGATGAACTCAAGATAGCACGAGAGCAGGCAGAAAAGCCAGCAGCTTCAGTTGGAAACTCTGAAGGATCGCTATCCACAGCCGCATCACCAGTTCCAGTTGCTGTCATGTCATCTCCATCTAAAGCATCACCAAATCTATCTGCTCCCAGCATATCTG
TATCTGCTACAGTCTTAGCATCAACAGGGACTCCGACAGTTGCTGCACCAGTTATGCCTCTTTTGCCCACAAACCCAGTTAGTGTTATGGCTTCTTTGACACCCACTATTTCTACATCTGCTGGAGCTGTCTCATCTGCAATGACCACATCTGTTCTCACTACTTCTCCCGCAATTGGTGTTGTGCCATCAATCACTGCA
GCTGCAATACCTCTTGCTAGTCCTGCTTCTTTAACACCAACTGCTGTGGCCCCCTCAACTAATGCAGTGACCACAAATGTAGCGGAAACTGCAAATGCTGCAACAGCGTCAATTGCTGATAAAACAAATGTTGTAGATTTAAAGGAAGGAGGACTTGATGAAGCTTCTGCACAGGATTTGGAGGAAGCTAAGAAAGCGAT
GCCTGTAACTGGAAAGGTTAATGTAACTCCCTTGTCAGAAGAGAAAGCTGTTGACGAGGAGCCTCTGATTTATGCCAATAAAATAGAGGCGAAGAATGCTTTTAAGGAACTCCTAGAATCTGCACATGTAGAAGCTGATTGGACTTGGGAACAGGCGATGCGTGTAATCATCAATGATAAGCGATATGGAGCCCTCAAAA
CCCTTGGAGAGCGTAAACAAGCTTTCAATGAATATTTGGCACAGCGAAAGAAACACGAGGCTGAAGAACGGCGCATTCGGCAGAAGAGAGCAAGGGAAGATTTTGTAATTATGTTGGAGGAGTGTAAAGAACTTACATCAGCGACGCGATGGAGTAAGGCCGTTACTCTCTTTGAAAACGATGCAAGGTTCCATGCTGTT
GATCGAGGAAGAGAAAGGGAGGAGCTGTTTGAGAGCTATTTGATTGAGTTGGAGCGGAAGGAACGGGACAAGGCGCGAGAAGAGCGGAAAAGGAATCTTGTTGAATATAGAGCATATTTGGAGTCTTGTGATTTCATAAAGGCTAATACTCAATGGAGGAAAGTACAAGATCGGCTAGAAGATGATGAGAGATGCTCACG
ATTGGATAAAATAGATCGATTAGAAATTTTCCAGGAGTATATCCGTGATTTGGAGAAGGAAGAAGAAGAAGAAAGGAGGATTCAAAAGGAACAATTACGACGTAAGGAGCGTAAGAACCGTGATGAATTTCGAAAGTTAATGGAGGAACACCGGGCATCTGGTATACTTACAGCTAAGACTCATTGGCGTGATTACTGTG
GCAAGGTTAAGGATTACCCAGCTTATGTTGCTGTTGCATCGAACACATCTGGTACAACACCTAAAGAATTGTTTGAAGATGTTGCAGAGGAGCTAGAGAAGCAGTATCACGAAGACAAAGCAAGGATAAAAGATGCCATGAAGGCAGGAAAGCTCACCATAACATCATCATGGACTTTCGACAAGTTCAAAGCTTCAATT
GCTGAAGAATGTGATTTGGCTGTAGTATCTGAATCAAACCTAAAGCTTGTTTTTGAAGAAGTGATAGAAAGGACAAGGGAAAAGGAAGAGAAGGAAGCAAAGAAAAGGCAAAGACTGGCAGATGACTTCACAGATTTACTCTATTCTGTAAAGGAAATAACTGCTTCCTCAAGATGGGAAGATTGCAAGTCTTTGCTTGA
AGATGCTCCCGAATACCGATCCATTAATGATGAGGTCTTCCAACGGGAGATATTCGAAGAGTACATTGCACACCTTCATGAAAAGCTGAAGGAGAAAGAACGCAAACGAGACGAGGAGAAGGCAAAGAAAGAGAAGGAAAAAGAGGAGAAAGAGAAGGAGAGAGAAAAACGGAAGGAGAAGGAGAAAGAGAAGGAGAAGG
AGAAGGAGAAAGAGAAGGAGAAGGAGAAGGAGAAAGAGAAGGAGAAGGAGAAAGAGGAGGAGGAAGAACCAAGTTCAAACCCCACCAAGCCACCTAGTACTATCAGCATTCCCGATCATTCAACAGAATCCCCCCACAACAACATGAAGCGATTTGGAGAGAGCTCCCCGTCACACACCTCGTTTGTTTTGCAGCACAAG
ACCGAAAACGTTAGGGATCTGTACACATTGGGCAGGAGACTGGGCCAAGGCCAGTTCGGTATAACGTATTTGTGTATTGAGAAGGGAACCGATAAGGCGTATGCCTGCAAATCTATTGCCAAGAGGAAGCTTCTGTCCATTGAGGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCATCATCTGGCGGGGCATCC
CAATGTGGTTACCATAAAGGGGGCGTACGAGGATGTGGCCTCCGTTCATCTGGTCATGGAGTTATGCGCTGGTGGGGAGCTGTTTGACAGGATCATTCAGAGGGGACATTACAGTGAGAGGAAGGCTGCTGAGCTCACCAGGACCATCGTGGGCGTGGTGGAGGCCTGCCATTCTCTGGGTGTTATGCACAGAGATTTGA
AGCCCGAGAACTTCTTGCTTTCCAGTACGGACGAGGATTCAGCCCTCAAGGCCACCGATTTTGGATTGTCAGTGTTCTTCAAGCCAGGTGAAACTTTTAGCGATGTAGTTGGAAGTCCGTACTATGTAGCCCCTGAAGTACTGTTGAAGAATTATGGTCCTGAAGCTGATATTTGGAGTGCTGGAGTCATTGTGTACATT
CTACTGAGTGGAGTTCCACCATTTTGGGGAGAGACAGAGAAGGGAATTTTTGATCAAGTTCTACATGCTGAACTTGACTTTGCATCAGACCCATGGCCTGGCATATCGGAGAATGCAAAGGACTTAATAAGAAAAATGCTTGATAGAAAACCCAAAAATAGACCAACAGCTCATGAAGTGCTTTGCGACCCTTGGATTCG
GGATGATGGGGTTGCACCTGACAGACCTCTTGATTCTGCAGTGCTCTCTCGGTTGAAACAATTCTCAGCAATGAACAAGATTAAAAAGATGGCTTTGCGTGTTATAGCAGACAGTCTCTCAGAAGATGAAATTGCTGGTCTTAAAGAGATGTTCAGGATGATTGATACAGACAACAGTGGTACAATTACCTTTGATGAAC
TGAAGGATGGGTTAAACAGAGTTGGTGCTACTAATCTTATGGAGTCAGAGATCCGAGAACTTATGGAGGCAGCTGATATAGACAACAGTGGTACCATAGATTATGGTGAATTCATTGCAGCTACATTGCATTTAAACAAGATGGAGCGGGAGGAGCATCTCTTTTCTGCCTTTTGTTATTTTGACAAAGATGGAAGTGGG
CAAATTACTATGGATGAACTTCAGCAAGCCTGCCAGGAATTTGGTATAGGTGATGCTGAGCTTGATGAAATGATCAAAGAAGTTGATCAAGATAATAATGGGAGCATTGATTACAATGAGTTTGTGGCAATGATGCGTAAAGGCAATGGTGGTATAGGCAGAAAAACGATGCGGAACAGCTTAGGACTAAGAGATGCCTT
AAAAATTGGTTAAGAAGTGTCCTGTAGAACTATTCGTACTCACAAATTCAGAGGGCATTCCATGCTCTGAGACTTTGCTTGATGTAATTCAATACTTTGCTATTTCTGTGCCCTATCGGATTATGAAAGATGCCTCAAAAGACTGCCAAGGTCCGTAAAAGAAATTTCACTTTGTTGATTACATGAAGCAGTGTTTCAAT
ATTCTTGGTTGAATTTAGAGTGCATTAAGTTGGATGCTGAGTCCAGTTTTATCTAATTGCAAAGAGAGGTAAACAGGTTTGTTGGTTTAAGCTGTTTATTGATATAAGGCTGGTTCAAAGTTGAGCTGTATATTTTTTCTGCACAAATATAGATGCTAAAGTTGTCATCCATGGAAGTTACTTTTATAAAATATGAGAAT
TTTCCTTTCTATCCTC
>TRINITY_DN130702_c2_g1_i14 from sample A1 / Example unspliced isoform:GCAAGTCCAAAACTAGGCCAGTTGTCTTCTGTCTTGCTTTTTATGGTTTTATTTTGTAATGTATTTTTTTAAACTAATAACAGCAAACATTATATAATGTAGGAACAATTACGACGTAAGGAGCGTAAGAACCGTGATGAATTTCGAAAGTTAATGGAGGAACACCGGGCATCTGGTATACTTACAGCTAAGACTCATTG
GCGTGATTACTGTGGCAAGGTTAAGGATTACCCAGCTTATGTTGCTGTTGCATCGAACACATCTGGTACAACACCTAAAGAATTGTTTGAAGATGTTGCAGAGGAGCTAGAGAAGCAGTATCACGAAGACAAAGCAAGGATAAAAGATGCCATGAAGGCAGGAAAGgtacgctatttgggcttataatatagttaacaga
atgatgaggtattgttttttaatttttcaatgtggtcatttcagCTCACCATAACATCATCATGGACTTTCGACAAGTTCAAAGCTTCAATTGCTGAAGAATGTGATTTGGCTGTAGTATCTGAATCAAACCTAAAG
Intron 7 GTAGGTTCAT ... TTTTGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 8.42 | 152.3 | 8 | 14 |
| A2 | 10.33 | 121.6 | 1 | 14 |
| A3 | 8.18 | 112.2 | 2 | 10 |
| A4 | 5.6 | 84.4 | 2 | 5 |
| A5 | 8.85 | 30.9 | 1 | 3 |
| A6 | 32 | 17 | 0 | 8 |
| A7 | 2.17 | 180.3 | 0 | 4 |
| A8 | 2.22 | 132.3 | 0 | 3 |
| A9 | 2.72 | 214.6 | 2 | 6 |
| A10 | 5.65 | 200.4 | 0 | 12 |
>TRINITY_DN130702_c2_g1_i7 from sample A1 / Example spliced isoformTATACTCCTAGGTTTAATAAATCCAATAGCGAGATGTATATGTAAAGACTGGAGAAGATTTAATAAACGCGGGTGTGTGTTGCGAGGAATAAATTCGGAGAGACAGGCTGCGATTGCACTGTTCTTCTCTCGCACATCGTTGTTCGTATTATTATGACCATTGAAGAAGAAATACAGGAGAAGGGTTTGGGGTTTGTTTA
TTATTCTTTCGGGCAAGCAATTGCCCCCAACCGATTAGAAAGAGGTCGCGAGATCGAGTCTCGCTAGACAAATATCTGCCTGCATTCGTCCCGCCCAGCTGATCATGGCCGCCGTTCCTCCTCAGACGCAACAGCAGCAACAACAAGCTGAAGCTGCCGCAATGACTCCGTGGATGAACGGGCCCAATACAGTAGCCACT
CCAGCAGTTTCTGGGCACCCATCTGGACCTCCTCAAACTCTCATGGCAGGAAATCCTTCATCCGGGCCGCTGCCACCTCGTCCACCTGGCATGGTGTCTTCCGGACCTCAAAACTTTGGACCTCCTCTGCCAATGCAATTTAGATCTGGAGTACCACAACAAACAGGTCAACAATTTATGCCTCCAAGTAGCCAACAGTT
TCGGCCTATGGCTCAAGGTATACCGCCGCCAAACATTGGAACTTCTCAATCTGTTCAACCACAGCCTGTGCAGTATCCTCCACAAATGCAACATTTGCCTCCACGTCCAGGGCAACAACAACAAACTCCGCCTTCATCTCAGGCTCCTTCTATGACATATCTTCAACAGCCAAGGCCAATGACAAGTGGGGCTCCTCCAT
CTCAGCAGCCTCAGCAATCTCAACAGCCTCTTAGTATGCCGCCTCCACCTGGTTTAGGTGGCATGGGATTGCCACCATCATCATCCTATACGTTTGCTCCATCTACATATGGTCAGTCACAGAATTCATACAGTGTTAATCCACAATATCAAGCTGTTTCTCAGCCTCAACACATGACGCCGGTGCATTCTGGAACTCAG
CAATGGGGATCTGCAAATCAAAATAGTGTTCCTGCATCTCAAGGAATGCAGACGGGCCAACAATCTGCTGTTGGTTTTGCTTCAGCTCCTGGAGCTGTTGTACAACCTAGTAATTCCAACATACAAAGTTCTTCAGATTGGCAAGAACACACTGCTACAGATGGAAGAAGATATTATTTCAACAAGAAGACAAGGCAGTC
AAGTTGGGAAAAGCCTCAAGAATTGATGACACCAATTGAGCGGGCGGATGCATCCACTGTTTGGAAAGAATTCACAACTCCAGAGGGGCGAAAGTACTATTACAACAAGGTCACCAAACAGTCCAAGTGGACTATTCCAGATGAACTCAAGATAGCACGAGAGCAGGCAGAAAAGCCAGCAGCTTCAGTTGGAAACTCTG
AAGGATCGCTATCCACAGCCGCATCACCAGTTCCAGTTGCTGTCATGTCATCTCCATCTAAAGCATCACCAAATCTATCTGCTCCCAGCATATCTGTATCTGCTACAGTCTTAGCATCAACAGGGACTCCGACAGTTGCTGCACCAGTTATGCCTCTTTTGCCCACAAACCCAGTTAGTGTTATGGCTTCTTTGACACCC
ACTATTTCTACATCTGCTGGAGCTGTCTCATCTGCAATGACCACATCTGTTCTCACTACTTCTCCCGCAATTGGTGTTGTGCCATCAATCACTGCAGCTGCAATACCTCTTGCTAGTCCTGCTTCTTTAACACCAACTGCTGTGGCCCCCTCAACTAATGCAGTGACCACAAATGTAGCGGAAACTGCAAATGCTGCAAC
AGCGTCAATTGCTGATAAAACAAATGTTGTAGATTTAAAGGAAGGAGGACTTGATGAAGCTTCTGCACAGGATTTGGAGGAAGCTAAGAAAGCGATGCCTGTAACTGGAAAGGTTAATGTAACTCCCTTGTCAGAAGAGAAAGCTGTTGACGAGGAGCCTCTGATTTATGCCAATAAAATAGAGGCGAAGAATGCTTTTA
AGGAACTCCTAGAATCTGCACATGTAGAAGCTGATTGGACTTGGGAACAGGCGATGCGTGTAATCATCAATGATAAGCGATATGGAGCCCTCAAAACCCTTGGAGAGCGTAAACAAGCTTTCAATGAATATTTGGCACAGCGAAAGAAACACGAGGCTGAAGAACGGCGCATTCGGCAGAAGAGAGCAAGGGAAGATTTT
GTAATTATGTTGGAGGAGTGTAAAGAACTTACATCAGCGACGCGATGGAGTAAGGCCGTTACTCTCTTTGAAAACGATGCAAGGTTCCATGCTGTTGATCGAGGAAGAGAAAGGGAGGAGCTGTTTGAGAGCTATTTGATTGAGTTGGAGCGGAAGGAACGGGACAAGGCGCGAGAAGAGCGGAAAAGGAATCTTGTTGA
ATATAGAGCATATTTGGAGTCTTGTGATTTCATAAAGGCTAATACTCAATGGAGGAAAGTACAAGATCGGCTAGAAGATGATGAGAGATGCTCACGATTGGATAAAATAGATCGATTAGAAATTTTCCAGGAGTATATCCGTGATTTGGAGAAGGAAGAAGAAGAAGAAAGGAGGATTCAAAAGGAACAATTACGACGTA
AGGAGCGTAAGAACCGTGATGAATTTCGAAAGTTAATGGAGGAACACCGGGCATCTGGTATACTTACAGCTAAGACTCATTGGCGTGATTACTGTGGCAAGGTTAAGGATTACCCAGCTTATGTTGCTGTTGCATCGAACACATCTGGTACAACACCTAAAGAATTGTTTGAAGATGTTGCAGAGGAGCTAGAGAAGCAG
TATCACGAAGACAAAGCAAGGATAAAAGATGCCATGAAGGCAGGAAAGGTACGCTATTTGGGCTTATAATATAGTTAACAGAATGATGAGGTATTGTTTTTTAATTTTTCAATGTGGTCATTTCAGCTCACCATAACATCATCATGGACTTTCGACAAGTTCAAAGCTTCAATTGCTGAAGAATGTGATTTGGCTGTAGT
ATCTGAATCAAACCTAAAGGTTAGTGATAGTTATATCTCTAACTAGACTGAAGATATTTGTTATCTGAAGTACTGTTATTGATAGAAGATGAATATAAATTAATCATATCCTGATGTTACGTGAAGTGAAAATCTTAGCCCAAGGGGTTAGCTCAACTGGTTGTTTCCATTGTTGCTGGGCCATTTTTGTGCCAGCAGCT
GCCTGGTTGGAATCCCCTTGGGTGAGGTGCACTAGTCTATGCCGATGGGTTTAC
>TRINITY_DN130702_c2_g1_i12 from sample A1 / Example unspliced isoform:CACAACTCCAGAGGGGCGAAAGTGAGTAAATATATTTCTTTAATAAGACCATTGTTGATTTGATGTAAGTCGAATTGAAAGCTTTTCCGTATTTATCTCAAATTCCCATCTCTTTTGTTTACACAGGTACTATTACAACAAGGTCACCAAACAGTCCAAGTGGACTATTCCAGATGAACTCAAGATAGCACGAGAGCAGG
CAGAAAAGCCAGCAGCTTCAGTTGGAAACTCTGAAGGATCGCTATCCACAGCCGCATCACCAGTTCCAGTTGCTGTCATGTCATCTCCATCTAAAGCATCACCAAATCTATCTGCTCCCAGCATATCTGTATCTGCTACAGTCTTAGCATCAACAGGGACTCCGACAGTTGCTGCACCAGTTATGCCTCTTTTGCCCACA
AACCCAGTTAGTGTTATGGCTTCTTTGACACCCACTATTTCTACATCTGCTGGAGCTGTCTCATCTGCAATGACCACATCTGTTCTCACTACTTCTCCCGCAATTGGTGTTGTGCCATCAATCACTGCAGCTGCAATACCTCTTGCTAGTCCTGCTTCTTTAACACCAACTGCTGTGGCCCCCTCAACTAATGCAGTGAC
CACAAATGTAGCGGAAACTGCAAATGCTGCAACAGCGTAAGGAAGATATTAACTATATTCTATCAAAGGGATGATGGGGTTAGTTGATTGCCTCCTACTGATCTTCTGTTCTTTTCTGTCATTTACAGGTCAATTGCTGATAAAACAAATGTTGTAGATTTAAAGGAAGGAGGACTTGATGAAGCTTCTGCACAGGATTT
GGAGGAAGCTAAGAAAGCGATGCCTGTAACTGGAAAGGTTAATGTAACTCCCTTGTCAGAAGAGAAAGCTGTTGACGAGGAGCCTCTGATTTATGCCAATAAAATAGAGGCGAAGAATGCTTTTAAGGAACTCCTAGAATCTGCACATGTAGAAGCTGATTGGACTTGGGAACAGGCGATGCGTGTAATCATCAATGATA
AGCGATATGGAGCCCTCAAAACCCTTGGAGAGCGTAAACAAGCTTTCAATGAATATTTGGCACAGCGAAAGAAACACGAGGCTGAAGAACGGCGCATTCGGCAGAAGAGAGCAAGGGAAGATTTTGTAATTATGTTGGAGGTAACCTTGCATCTTCATTTGAAATTCTTTGAGCTTGCTACACTTCTGGAATCTACCTAT
AAAAATTAAACTGTTCTCGCTTATTTTATCATGGACAACTGAATATTCAAGGATTAAAATTATTTTCAATAATAAAATTTATCTTTTTTTGTAATACTGTTGTAACAATTGTATTTTTCTCAGGAGTGTAAAGAACTTACATCAGCGACGCGATGGAGgtaggttcattcatatattgactcagactgtttatgcccagc
caagtaccatttgaatatatgttcaacctctaattaatgtttttaaaagatctagaataattgagttcccataactattttttgtattttcttatagatgcagtatagttgagagtgcttttacctaactgttattattcattttgagcagTAAGGCCGTTACTCTCTTTGAAAACGATGCAAGGTTCCATGCTGTTGAT
CGAGGAAGAGAAAGGGAGGAGCTGTTTGAGAGCTATTTGATTGAGTTGGAGCGGAAGGTATGAACACACTTACTTTATTAAGCCATCTTTCAGTTAATTAGTTAAATGGGAGCTGTATTTTACATACGTATGTTGGAAAAGCAACTTTTATTCAAAATTCATGGATGAATATTATATATATTTGTCAAATTTAGCTAGTA
GAACATAGCTACATGCACTTAATTTAAGGCACAGTTGTTGTCTAGATAATGATGCAAAGCATCATAATGTTGATGAACAGCTCTTGCCAACATAGGCAAGAGGGCCCTATGTTATACCTTGCTCCAAGATCTGGAGTACCCTCAATCCATTGAGCTACAGCTTCAATTTTACAAAGATTAAATTGTAGAAAGTCACAAAT
TTTGCAATACATTGTTATTTTAGTGTATTTTGGCTTCCTATTTCAAATACATAGATGCTTTCGTCTCCCATACCAACAAAATTTTCCAAGCTCTATGATTGACATATTGATGAAGAACAAACATAAATTCTGAAAACATTACCTTGTGGGCACCATTTCTCCCACTTGGAAAACACTTGCCAGCAAAATCAATTTCAATC
CAGTACCGTGGCTGCCACGTGGACACAATGTCTCATCTCCAGCATTAACACTGTCTCCATGCCAACAATTCTTTCCTGACTATATGGCTAACACGGCAAACCCAGCTCTATGACTGACTTGACAACGCCTCATCTCCTTGACAGTTTCCTAGGAATTTTACTTCGTGCTGTGCCTCTCTCCTTAGCTCTTGTGTCTGGCT
GCCATTGACCCAAGTAAATGGTTGACTCAATATCTATCTTCTGTGATTATTAATGTCATCTGGGCACCAACTTGCATGTCGGTTGTTCCACATGACTGCTCTGTGAATTGTTGCCTGTGATACCCTCTTGCAAAACTCAATTTTATGCAACTTTCATTGACAATATGAGTTGATACAAACTCTGTTGATGTCAAAACTAT
ATTTTTTTTAGGAGATAACCTTTGGTACATTCAAAGATAAATATTCCATTCATGTTTTCTGCCTGTTGGAACACTCGTGTCAAAGGACAGAGAGTGAGAAATGACAAATAACAAAAAGATGATCAACGGTCTCATTTCCCAGACCCCCTTATAGAGTACACACCTGCTTGGCCTATTCCAATTTCTTTTCTGGCAATTGG
CCCAAGTCAGAATCTGTGAGCCTTGTAAAGCTTTGTGCATGCAGCTTCTGTATCAAACCTGGTCAAAGCGTATAATTACCACTGCAAACAATCCAGGGATCTTCTCCCAATCTTAATTTATAGCCTCTTCCAGTCCTCCAGGTCTCCAAGCCACCTAAAGTCAATGATTGGAAAGGATTTGAGTAGCCCTTTCCTTACTA
GTGAAGCTCTTTCAAAGATTCCTTTTTTTTTTTTTCTGATCCCATTTTCAATGTTGTCATCTCTTAGATACTTACTCTTGATAACTTTAATCCATAAACGATCAATAAAGAGACTCTTTGTTGCTAGTGCCTGACTAAAGATATGAATGTTCTTTAGTCCTCATCTCCGGTTTCTTTTGTTCTAGTTATTTTTGTCCATT
TTATAAGAAGAGGGGAATACCTTCAGTTTCTTTCTTCCCAGACCAAAAAGGCTAAAACAATTTTACTTATCTTGTCTAGTATACCCTTGGGGATATGAGCAATGAATAGCCAGTAAACAGGTATACTTTCTGGAGCTGACTCAACTAACACCAATCTACCACCTTGTGACAGCCATCTAAAAGACCAATAGGGCACCCTA
GCATTGTATAAACATAACCACGCAGCAAATCTGTAATCATTTGGTTTTATTTTAAAATCCAGGTATTTTACTTCTTGGTCCAGAGAAGCAGAAGTCAGAGTAAAGACTTGGTAAACCTGTTCTTCAATTCTGAACTCAATCCATTGTAAAGCATACAAGACTTACCTGTAGCTACACAACAAGTATCCAAGAGTCTTATA
TTGTTTCATTTTCCTTAAAGTTCCTTGCCCAAAAATCAAGTTTTAATCAACAAATAACAAGTGAGTAATGTACAGTTACACAGAACCTGCTACTCTTATGCCTCTGATAAAGCCCTCTCTTCTGGCTTCCATGATCAGCCT
Intron 8 GTGAATTTTA ... CTCATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.44 | 58 | 7 | 14 |
| A2 | 13.89 | 31 | 0 | 5 |
| A3 | 3.85 | 25 | 2 | 1 |
| A4 | 10.34 | 26 | 4 | 3 |
| A5 | 20 | 24 | 7 | 6 |
| A6 | 13.04 | 20 | 0 | 3 |
| A7 | 14.89 | 80 | 0 | 14 |
| A8 | 18.29 | 143 | 4 | 32 |
| A9 | 19.54 | 140 | 2 | 34 |
| A10 | 13.39 | 110 | 0 | 17 |
>TRINITY_DN130702_c2_g1_i1 from sample A1 / Example spliced isoformTATACTCCTAGGTTTAATAAATCCAATAGCGAGATGTATATGTAAAGACTGGAGAAGATTTAATAAACGCGGGTGTGTGTTGCGAGGAATAAATTCGGAGAGACAGGCTGCGATTGCACTGTTCTTCTCTCGCACATCGTTGTTCGTATTATTATGACCATTGAAGAAGAAATACAGGAGAAGGGTTTGGGGTTTGTTTA
TTATTCTTTCGGGCAAGCAATTGCCCCCAACCGATTAGAAAGAGGTCGCGAGATCGAGTCTCGCTAGACAAATATCTGCCTGCATTCGTCCCGCCCAGCTGATCATGGCCGCCGTTCCTCCTCAGACGCAACAGCAGCAACAACAAGCTGAAGCTGCCGCAATGACTCCGTGGATGAACGGGCCCAATACAGTAGCCACT
CCAGCAGTTTCTGGGCACCCATCTGGACCTCCTCAAACTCTCATGGCAGGAAATCCTTCATCCGGGCCGCTGGTAAGCATGGTCTGATTGTTTTTTATCACATTAAAGCTGCTTTTGGTTCTACGGACATCATCACATTTGAATTCTTCTCTTGAATTTTCTAAATGTATTTGTAGCCACCTCGTCCACCTGGCATGGTG
TCTTCCGGACCTCAAAACTTTGGACCTCCTCTGCCAATGCAATTTAGATCTGGAGTACCACAACAAACAGGTCAACAATTTATGCCTCCAAGTAGCCAACAGTTTCGGCCTATGGCTCAAGGTATACCGCCGCCAAACATTGGAACTTCTCAATCTGTTCAACCACAGCCTGTGCAGTATCCTCCACAAATGCAACATTT
GCCTCCACGTCCAGGGCAACAACAACAAACTCCGCCTTCATCTCAGGCTCCTTCTATGACATATCTTCAACAGCCAAGGCCAATGACAAGTGGGGCTCCTCCATCTCAGCAGCCTCAGCAATCTCAACAGCCTCTTAGTATGCCGCCTCCACCTGGTTTAGGTGGCATGGGATTGCCACCATCATCATCCTATACGTTTG
CTCCATCTACATATGGTCAGTCACAGAATTCATACAGTGTTAATCCACAATATCAAGCTGTTTCTCAGCCTCAACACATGACGCCGGTGCATTCTGGAACTCAGCAATGGGGATCTGCAAATCAAAATAGTGTTCCTGCATCTCAAGGAATGCAGACGGGCCAACAATCTGCTGTTGGTTTTGCTTCAGCTCCTGGAGCT
GTTGTACAACCTAGTAATTCCAACATACAAAGTTCTTCAGATTGGCAAGAACACACTGCTACAGATGGAAGAAGATATTATTTCAACAAGAAGACAAGGCAGTCAAGTTGGGAAAAGCCTCAAGAATTGATGACACCAATTGAGCGGGCGGATGCATCCACTGTTTGGAAAGAATTCACAACTCCAGAGGGGCGAAAGTA
CTATTACAACAAGGTCACCAAACAGTCCAAGTGGACTATTCCAGATGAACTCAAGATAGCACGAGAGCAGGCAGAAAAGCCAGCAGCTTCAGTTGGAAACTCTGAAGGATCGCTATCCACAGCCGCATCACCAGTTCCAGTTGCTGTCATGTCATCTCCATCTAAAGCATCACCAAATCTATCTGCTCCCAGCATATCTG
TATCTGCTACAGTCTTAGCATCAACAGGGACTCCGACAGTTGCTGCACCAGTTATGCCTCTTTTGCCCACAAACCCAGTTAGTGTTATGGCTTCTTTGACACCCACTATTTCTACATCTGCTGGAGCTGTCTCATCTGCAATGACCACATCTGTTCTCACTACTTCTCCCGCAATTGGTGTTGTGCCATCAATCACTGCA
GCTGCAATACCTCTTGCTAGTCCTGCTTCTTTAACACCAACTGCTGTGGCCCCCTCAACTAATGCAGTGACCACAAATGTAGCGGAAACTGCAAATGCTGCAACAGCGTCAATTGCTGATAAAACAAATGTTGTAGATTTAAAGGAAGGAGGACTTGATGAAGCTTCTGCACAGGATTTGGAGGAAGCTAAGAAAGCGAT
GCCTGTAACTGGAAAGGTTAATGTAACTCCCTTGTCAGAAGAGAAAGCTGTTGACGAGGAGCCTCTGATTTATGCCAATAAAATAGAGGCGAAGAATGCTTTTAAGGAACTCCTAGAATCTGCACATGTAGAAGCTGATTGGACTTGGGAACAGGCGATGCGTGTAATCATCAATGATAAGCGATATGGAGCCCTCAAAA
CCCTTGGAGAGCGTAAACAAGCTTTCAATGAATATTTGGCACAGCGAAAGAAACACGAGGCTGAAGAACGGCGCATTCGGCAGAAGAGAGCAAGGGAAGATTTTGTAATTATGTTGGAGGAGTGTAAAGAACTTACATCAGCGACGCGATGGAGTAAGGCCGTTACTCTCTTTGAAAACGATGCAAGGTTCCATGCTGTT
GATCGAGGAAGAGAAAGGGAGGAGCTGTTTGAGAGCTATTTGATTGAGTTGGAGCGGAAGGAACGGGACAAGGCGCGAGAAGAGCGGAAAAGGAATCTTGTTGAATATAGAGCATATTTGGAGTCTTGTGATTTCATAAAGGCTAATACTCAATGGAGGAAAGTACAAGATCGGCTAGAAGATGATGAGAGATGCTCACG
ATTGGATAAAATAGATCGATTAGAAATTTTCCAGGAGTATATCCGTGATTTGGAGAAGGAAGAAGAAGAAGAAAGGAGGATTCAAAAGGAACAATTACGACGTAAGGAGCGTAAGAACCGTGATGAATTTCGAAAGTTAATGGAGGAACACCGGGCATCTGGTATACTTACAGCTAAGACTCATTGGCGTGATTACTGTG
GCAAGGTTAAGGATTACCCAGCTTATGTTGCTGTTGCATCGAACACATCTGGTACAACACCTAAAGAATTGTTTGAAGATGTTGCAGAGGAGCTAGAGAAGCAGTATCACGAAGACAAAGCAAGGATAAAAGATGCCATGAAGGCAGGAAAGCTCACCATAACATCATCATGGACTTTCGACAAGTTCAAAGCTTCAATT
GCTGAAGAATGTGATTTGGCTGTAGTATCTGAATCAAACCTAAAGCTTGTTTTTGAAGAAGTGATAGAAAGGACAAGGGAAAAGGAAGAGAAGGAAGCAAAGAAAAGGCAAAGACTGGCAGATGACTTCACAGATTTACTCTATTCTGTAAAGGAAATAACTGCTTCCTCAAGATGGGAAGATTGCAAGTCTTTGCTTGA
AGATGCTCCCGAATACCGATCCATTAATGATGAGGTCTTCCAACGGGAGATATTCGAAGAGTACATTGCACACCTTCATGAAAAGCTGAAGGAGAAAGAACGCAAACGAGACGAGGAGAAGGCAAAGAAAGAGAAGGAAAAAGAGGAGAAAGAGAAGGAGAGAGAAAAACGGAAGGAGAAGGAGAAAGAGAAGGAGAAGG
AGAAGGAGAAAGAGAAGGAGAAGGAGAAGGAGAAAGAGAAGGAGAAGGAGAAAGAGGAGGAGGAAGAACCAAGTTCAAACCCCACCAAGCCACCTAGTACTATCAGCATTCCCGATCATTCAACAGAATCCCCCCACAACAACATGAAGCGATTTGGAGAGAGCTCCCCGTCACACACCTCGTTTGTTTTGCAGCACAAG
ACCGAAAACGTTAGGGATCTGTACACATTGGGCAGGAGACTGGGCCAAGGCCAGTTCGGTATAACGTATTTGTGTATTGAGAAGGGAACCGATAAGGCGTATGCCTGCAAATCTATTGCCAAGAGGAAGCTTCTGTCCATTGAGGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCATCATCTGGCGGGGCATCC
CAATGTGGTTACCATAAAGGGGGCGTACGAGGATGTGGCCTCCGTTCATCTGGTCATGGAGTTATGCGCTGGTGGGGAGCTGTTTGACAGGATCATTCAGAGGGGACATTACAGTGAGAGGAAGGCTGCTGAGCTCACCAGGACCATCGTGGGCGTGGTGGAGGCCTGCCATTCTCTGGGTGTTATGCACAGAGATTTGA
AGCCCGAGAACTTCTTGCTTTCCAGTACGGACGAGGATTCAGCCCTCAAGGCCACCGATTTTGGATTGTCAGTGTTCTTCAAGCCAGGTGAAACTTTTAGCGATGTAGTTGGAAGTCCGTACTATGTAGCCCCTGAAGTACTGTTGAAGAATTATGGTCCTGAAGCTGATATTTGGAGTGCTGGAGTCATTGTGTACATT
CTACTGAGTGGAGTTCCACCATTTTGGGGAGAGACAGAGAAGGGAATTTTTGATCAAGTTCTACATGCTGAACTTGACTTTGCATCAGACCCATGGCCTGGCATATCGGAGAATGCAAAGGACTTAATAAGAAAAATGCTTGATAGAAAACCCAAAAATAGACCAACAGCTCATGAAGTGCTTTGCGACCCTTGGATTCG
GGATGATGGGGTTGCACCTGACAGACCTCTTGATTCTGCAGTGCTCTCTCGGTTGAAACAATTCTCAGCAATGAACAAGATTAAAAAGATGGCTTTGCGTGTTATAGCAGACAGTCTCTCAGAAGATGAAATTGCTGGTCTTAAAGAGATGTTCAGGATGATTGATACAGACAACAGTGGTACAATTACCTTTGATGAAC
TGAAGGATGGGTTAAACAGAGTTGGTGCTACTAATCTTATGGAGTCAGAGATCCGAGAACTTATGGAGGCAGCTGATATAGACAACAGTGGTACCATAGATTATGGTGAATTCATTGCAGCTACATTGCATTTAAACAAGATGGAGCGGGAGGAGCATCTCTTTTCTGCCTTTTGTTATTTTGACAAAGATGGAAGTGGG
CAAATTACTATGGATGAACTTCAGCAAGCCTGCCAGGAATTTGGTATAGGTGATGCTGAGCTTGATGAAATGATCAAAGAAGTTGATCAAGATAATAATGGGAGCATTGATTACAATGAGTTTGTGGCAATGATGCGTAAAGGCAATGGTGGTATAGGCAGAAAAACGATGCGGAACAGCTTAGGACTAAGAGATGCCTT
AAAAATTGGTTAAGAAGTGTCCTGTAGAACTATTCGTACTCACAAATTCAGAGGGCATTCCATGCTCTGAGACTTTGCTTGATGTAATTCAATACTTTGCTATTTCTGTGCCCTATCGGATTATGAAAGATGCCTCAAAAGACTGCCAAGGTCCGTAAAAGAAATTTCACTTTGTTGATTACATGAAGCAGTGTTTCAAT
ATTCTTGGTTGAATTTAGAGTGCATTAAGTTGGATGCTGAGTCCAGTTTTATCTAATTGCAAAGAGAGGTAAACAGGTTTGTTGGTTTAAGCTGTTTATTGATATAAGGCTGGTTCAAAGTTGAGCTGTATATTTTTTCTGCACAAATATAGATGCTAAAGTTGTCATCCATGGAAGTTACTTTTATAAAATATGAGAAT
TTTCCTTTCTATCCTC
>TRINITY_DN130702_c2_g1_i18 from sample A1 / Example unspliced isoform:TGGAAAAAATATGAGTCAAAATGGTAAAAAGACTAAGTTTTAAGATTCTATTTTGTATTAACTGCATTCAAAATCTTTCTCGCAGCTTGTTTTTGAAGAAGTGATAGAAAGGACAAGGGAAAAGGAAGAGAAGGAAGCAAAGAAAAGGCAAAGACTGGCAGATGACTTCACAGATTTACTCTATTCTGTAAAGgtgaatt
ttaatctttttcacaagaagagtcgtttctcccaagatcctaatttttttatactttctagttccacacattttattttgctttggcatcttactattagctagagatattgttacacttcttgatagttgactgtgatggctcatttcagGAAATAACTGCTTCCTCAAGATGGGAAGATTGCAAGTCTTTGCTTGAAG
ATGCTCCCGAATACCGATCCATTAATGATGAGGTCTTCCAACGGGAGATATTCGAAGAGTACATTGCACACCTTCATGAAAAGCTGAAGGAGAAAGAACGCAAACGAGACGAGGAGAAGG