sp|Q9LHL3|LRP6C_ARATH ----> La-related protein 6C
Intron 1 GTAATCATTC ... GTGTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.89 | 62 | 8 | 12 |
| A2 | 16.46 | 33 | 7 | 6 |
| A3 | 11.83 | 41 | 5 | 6 |
| A4 | 3.85 | 25 | 0 | 2 |
| A5 | 3.7 | 26 | 0 | 2 |
| A6 | 2 | 49 | 0 | 2 |
| A7 | 1.72 | 114 | 2 | 2 |
| A8 | 5.92 | 143 | 3 | 15 |
| A9 | 9.47 | 110 | 4 | 19 |
| A10 | 3.03 | 96 | 2 | 4 |
>TRINITY_DN41710_c1_g1_i9 from sample A8 / Example spliced isoformTTACAATCTTTCACGGGATACTCTTGACATGGCAAAGAAAACTCAAAACTCAACCGAGGCCTGAAAAAACTGGAAAGGATCGATGCCTACGAGTAAGAAAAACAACAGATCCAATGCTATAATTCCGCTATAATTCTAAGTCAAGAGGATGAAGGATTATTCAATTGAAAATAAAAGATCCACTAAATTGGCAAAAATTC
CCCTTAAAACCTAAAAAAACCTTGAAAATTCAGACCGTTACAGAGATTTACTCAAGATTAGCCGTTTTCCCAACAATTGAATGATTTGGTTAGTCTTTAAAACAGCAACCCAAAGTAGGAAAATAGACAAAGAATTGCAAAGGGAGGGGAAGAGAGGGGAAGGCTGGTCATCGGGCCTCAAGCAGAGAGCAGATTGCTAT
TGCACGCACTGTTTTTTGATTTCTTCCATGTTCTCCTTCAGTGCTCTGGTGGGTCTTTAATGGCTGCCAAGGAGAAGGAGATGAACCGCAGTAATCCATAGGCGAAGAAGAAGAGAAGGAGGAAGAGGTATATTCATTAAGTATATCACCTCAAGCTATCTTGTTACAGAAACAGCACATAACCACCATGGCACAACAGC
CTCCCTGGAATGCTCATGAGTACTTACTGCAATTGGATTCAGCCCAAGAATACAACTACCCACAGACACCACCACAACAAGAACAACGCCCACATCATGATCATGCTGATATGGAGCCCGAAACTTCAGGATCCGTGGAAGATAATGATAGGGACAGTTCTGCAGGGGATTCCAAGATCAATGGCGGTGAAGAGGCCAAT
AAAATCGATGGATCCCCATGTGGGTCTTCTGTGAGCAAGGGTTTTACAGCCAGCAAACTCAATGCAAAGGCTCCAGAGTTCATTCCGAGAGGACCCTTGTCTCCCTTGCAGGTACCCACAACGCCCCCCATGCTGCAACCTCAACAGAGCCGACCCGTTGTTTCTCAGCCCTTGCCACGGCTCATGATTCCCCAGAGCCC
CCGCCCACAGGCCCTCCAGGTGTATTCAACAGGTTCTCCCAGAATGCCTGTTCAGTTCCCTGCATCCCCTGCTCAAGTGGGTCAGGCTTGTATTTCAGCCACCAGGCCTCTTGCCCTTGGTTCTTCCCCACACTATTCCCCGGGTGGGGGGTTGGTTGAGTATTATGTTGAACACGAGGCTTCTGATGCAGAGAACATTG
GGAATGCTGCTTCCAGTACTTCGGCTAAGGGCGGTGTTCTTACTGAAGAGCTCAGACAGAAAATTGTTAGACAGGTGGAGTATTATTTTAGTGATGCAAATCTTAGTACAAATGACTATTTGATGAAATTTGTGAGTAAGGACCCGGAAGGATTTGTTCCTATTCCTGTTATTGCATCATTCAAGAAAGTGAAAAGCCTT
ATTAGTAACTATGCATTGGTCACAGCTGCGCTGAGGACGTCTTCGCAACTAGTCGTAAGTGAAGATGGGAAGAAAGTGAGAAGAGTGACCCCAATGTCAGATGCAGAAATCGAAGAATTGCAAGTATGTAATTAATGCCAGTTTGTCTTTACATGAATTTTCGATGATTCAATCAGTCTGGAGCTTGTTTGAGTAAAATA
TGTTGAAGTTCAAATACCATCTCTGCTTGGGCTGCTATACAGTGTAAAGACGGCG
>TRINITY_DN41710_c1_g1_i11 from sample A8 / Example unspliced isoform:GCTGCGCTGAGGACGTCTTCGCACCTAGTACGTTTTTGAGCCGAAAGAGCTTACCAATTTTAGCGAGAGCATTTGAGATTTTTCAGGGTTGCATTTAATAATTTATTTTTTGTTGTTCTGGCAGGTCGTAAGTGAAGATGGGAAGAAAGTGAGAAGAGTGACCCCAATGTCAGATGCAGAAATCGAAGAATTGCAAgtaa
tcattctttattttactatttccaaagataattaccaatatggacctgctttttttatttttctttggcattgtgtgaatgcaccatagttatcgttcttccaatttgcagtcacgcacagttgttgcagaaaatctgccagaagaccatactaatgaaaacatcgaaaaaatatttgccggtgttggcagGTATGTAAT
TAATGCCAGTTTGTCTTTACATGAATTTTCGATGATTCAATCAGTCTGGAGCTTGTTTGAGTAAAATATGTTGAAGTTCAAATACCATCTCTGCTTGGGCTGCTATACAGTGTAAAGACGGCG
Intron 2 GTAATCATTC ... CAATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 8.51 | 251 | 22.6 | 25 |
| A2 | 6.84 | 182 | 11.3 | 15.9 |
| A3 | 5.91 | 222 | 13.9 | 16.1 |
| A4 | 7.67 | 135 | 7.1 | 13.6 |
| A5 | 7.43 | 92 | 7.4 | 8.3 |
| A6 | 5.79 | 248 | 13.1 | 18 |
| A7 | 7.27 | 631.9 | 32.9 | 59 |
| A8 | 6.83 | 668 | 38.7 | 55.9 |
| A9 | 6.46 | 645 | 30.6 | 50.1 |
| A10 | 6.29 | 584 | 25.1 | 45.4 |
>TRINITY_DN120486_c0_g1_i3 from sample A1 / Example spliced isoformCTTTCACGGGATACTCTTGACATGGCAAAGAAAACTCAAAACTCAACCGAGGCCTGAAAAAACTGGAAAGGATCGATGCCTACGAGCAAGAAAAACAACAGATCCAATGCTATAATTCCGCTATAATTCTAAGTCAAGAGGATGAAGGATTATTCAATTGAAAATAAAAGATCCACTAAATTGGCAAAAATTCCCCTTAA
AACCTAAAAAAACCTTGAAAATTCAGACCGTTACAGAGATTTACTCAAGATTAGCCGTTTTCCCAACAATTGAATGATTTGGTTAGTCTTTAAAACAGCAACCCAAAGTAGGAAAATAGACAAAGAATTGCAAAGGGAGGGGAAGAGAGGGGAAGGCTGGTCATCGGGCCTCAAGCAGAGAGCAGATTGCTATTGCACGC
ACTGTTTTTTGATTTCTTCCATGTTCTCCTTCAGTGCTCTGGTGGGTCTTTAATGGCTGCCAAGGAGAAGGAGATGAACCGCAGTAATCCATAGGCGAAGAAGAAGAGAAGGAGGAAGAGGTATATTCATTAAGTATATCACCTCAAGCTATCTTGTTACAGAAACAGCACATAACCACCATGGCACAACAGCCTCCCTG
GAATGCTCATGAGTACTTACTGCAATTGGATTCAGCCCAAGAATACAACTACCCACAGACACCACCACAACAAGAACAACGCCCACATCATGATCATGCTGATATGGAGCCCGAAACTTCAGGATCCGTGGAAGATAATGATAGGGACAGTTCTGCAGGGGATTCCAAGATCAATGGCGGTGAAGAGGCCAAGAAAATCG
ATGGATCCCCATGTGGGTCTTCTGTGAGCAAGGGTTTTACAGCCAGCAAACTCAATGCAAAGGCTCCAGAGTTCATTCCGAGAGGACCCTTGTCTCCCTTGCAGGTACCCACAACGCCCCCCATGCTGCAACCTCAACAGAGCCGACCCGTTGTTTCTCAGCCCTTGCCACGGCTCATGATTCCCCAGAGCCCCCGCCCA
CAGGCCCTCCAGGTGTATTCAACAGGTTCTCCCAGAATGCCTGTTCAGTTCCCTGCATCCCCTGCTCAAGTGGGTCAGGCTTGTATTTCAGCCACCAGGCCTCTTGCCCTTGGTTCTTCCCCACACTATTCCCCGGGTGGGGGGTTGGTTGAGTATTATGTTGAACACGAGGCTTCTGATGCAGAGAACATTGGGAATGC
TGCTTCCAGTACTTCGGCTAAGGGCGGTGTTCTTACTGAAGAGCTCAGACAGAAAATTGTTAGACAGGTGGAGTATTATTTTAGTGATGCAAATCTTAGTACAAATGACTATTTGATGAAATTTGTGAGTAAGGACCCGGAAGGATTTGTTCCTATTCCTGTTATTGCATCATTCAAGAAAGTGAAAAGCCTTATTAGTA
ACTATGCATTGGTCACAGCTGCGCTGAGGACGTCTTCGCAACTAGTCGTAAGTGAAGATGGGAAGAAAGTGAGAAGAGTGACCCCAATGTCAGATGCAGAAATCGAAGAATTGCAATCACGCACAGTTGTTGCAGAAAATCTGCCAGAAGACCATACTAATGAAAACATCGAAAAAATATTTGCCGGTGTTGGCAGTGTA
AAGACGGTGCGTATTTGCCATCCTCAGGCGGCTAATGGTTCCAACCTGTCAGGTTCAAGATATCCACGGACTGACATGCTCGTCAGTAACAAGGTAAATGAAATGAAATAGTGAATTAAACTTTATTCATTATTAATTGAAGTAGCAAATTAACATTCATATTTATTTGTAATTGTGTAGTAAAATAGCCTTTTCACATG
TTGTGAAACCCTTGATGCAAATTA
>TRINITY_DN120486_c0_g1_i5 from sample A1 / Example unspliced isoform:CTTTCACGGGATACTCTTGACATGGCAAAGAAAACTCAAAACTCAACCGAGGCCTGAAAAAACTGGAAAGGATCGATGCCTACGAGCAAGAAAAACAACAGATCCAATGCTATAATTCCGCTATAATTCTAAGTCAAGAGGATGAAGGATTATTCAATTGAAAATAAAAGATCCACTAAATTGGCAAAAATTCCCCTTAA
AACCTAAAAAAACCTTGAAAATTCAGACCGTTACAGAGATTTACTCAAGATTAGCCGTTTTCCCAACAATTGAATGATTTGGTTAGTCTTTAAAACAGCAACCCAAAGTAGGAAAATAGACAAAGAATTGCAAAGGGAGGGGAAGAGAGGGGAAGGCTGGTCATCGGGCCTCAAGCAGAGAGCAGATTGCTATTGCACGC
ACTGTTTTTTGATTTCTTCCATGTTCTCCTTCAGTGCTCTGGTGGGTCTTTAATGGCTGCCAAGGAGAAGGAGATGAACCGCAGTAATCCATAGGCGAAGAAGAAGAGAAGGAGGAAGAGGTATATTCATTAAGTATATCACCTCAAGCTATCTTGTTACAGAAACAGCACATAACCACCATGGCACAACAGCCTCCCTG
GAATGCTCATGAGTACTTACTGCAATTGGATTCAGCCCAAGAATACAACTACCCACAGACACCACCACAACAAGAACAACGCCCACATCATGATCATGCTGATATGGAGCCCGAAACTTCAGGATCCGTGGAAGATAATGATAGGGACAGTTCTGCAGGGGATTCCAAGATCAATGGCGGTGAAGAGGCCAAGAAAATCG
ATGGATCCCCATGTGGGTCTTCTGTGAGCAAGGGTTTTACAGCCAGCAAACTCAATGCAAAGGCTCCAGAGTTCATTCCGAGAGGACCCTTGTCTCCCTTGCAGGTACCCACAACGCCCCCCATGCTGCAACCTCAACAGAGCCGACCCGTTGTTTCTCAGCCCTTGCCACGGCTCATGATTCCCCAGAGCCCCCGCCCA
CAGGCCCTCCAGGTGTATTCAACAGGTTCTCCCAGAATGCCTGTTCAGTTCCCTGCATCCCCTGCTCAAGTGGGTCAGGCTTGTATTTCAGCCACCAGGCCTCTTGCCCTTGGTTCTTCCCCACACTATTCCCCGGGTGGGGGGTTGGTTGAGTATTATGTTGAACACGAGGCTTCTGATGCAGAGAACATTGGGAATGC
TGCTTCCAGTACTTCGGCTAAGGGCGGTGTTCTTACTGAAGAGCTCAGACAGAAAATTGTTAGACAGGTGGAGTATTATTTTAGTGATGCAAATCTTAGTACAAATGACTATTTGATGAAATTTGTGAGTAAGGACCCGGAAGGATTTGTTCCTATTCCTGTTATTGCATCATTCAAGAAAGTGAAAAGCCTTATTAGTA
ACTATGCATTGGTCACAGCTGCGCTGAGGACGTCTTCGCAACTAGTCGTAAGTGAAGATGGGAAGAAAGTGAGAAGAGTGACCCCAATGTCAGATGCAGAAATCGAAGAATTGCAAgtaatcattctttattttactatttccaaagataattaccaatatggacctgctttttttatttttctttggcattgtgtgaat
gcaccatagttatcgttcttccaatttgcagTCACGCACAGTTGTTGCAGAAAATCTGCCAGAAGACCATACTAATGAAAACATCGAAAAAATATTTGCCGGTGTTGGCAGGTATGTAATTAATGCCAGTTTGTCTTTACATGAATTTTCGATGATTCAATCAGTCTGGAGCTTGTTTGAGTAAAATATGTTGAAGTTCA
AATACCATCTCTGCTTGGGCTGCTATACAGTGTAAAGACGGTGCGTATTTGCCATCCTCAGGCGGCTAATGGTTCCAACCTGTCAGGTTCAAGATATCCACGGACTGACATGCTCGTCAGTAACAAG
Intron 3 GTATGTGATA ... CAACTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.48 | 243.8 | 0 | 83 |
| A2 | 18.55 | 168.3 | 0 | 38 |
| A3 | 20.29 | 201.1 | 0 | 51 |
| A4 | 23.4 | 184.1 | 3 | 56 |
| A5 | 26.1 | 99.3 | 0 | 35 |
| A6 | 23.57 | 409.3 | 1 | 126 |
| A7 | 22.56 | 1028.8 | 3 | 299 |
| A8 | 23.75 | 1116.8 | 1 | 347 |
| A9 | 23.38 | 939.9 | 0 | 286 |
| A10 | 26.23 | 804.1 | 0 | 285 |
>TRINITY_DN42944_c1_g1_i3 from sample A7 / Example spliced isoformTGAAAGCTCTGAAAAGTTGAGATTCTATTAGTTACGGAATCAAAGGGCGACTACCTACAAGAAATGAAAAATGGACACCGCATGACGGGTACGATTACAATCTTTCACGGGATACTCTTGACATGGCAAAGAAAACTCAAAACTCAACCGAGGCCTGAAAAAACTGGAAAGGATCGATGCCTACGAGCAAGAAAAACAAC
AGATCCAATGCTATAATTCCGCTATAATTCTAAGTCAAGAGGATGAAGGATTATTCAATTGAAAATAAAAGATCCACTAAATTGGCAAAAATTCCCCTTAAAACCTAAAAAAACCTTGAAAATTCAGACCGTTACAGAGATTTACTCAAGATTAGCCGTTTTCCCAACAATTGAATGATTTGGTTAGTCTTTAAAACAGC
AACCCAAAGTAGGAAAATAGACAAAGAATTGCAAAGGGAGGGGAAGAGAGGGGAAGGCTGGTCATCGGGCCTCAAGCAGAGAGCAGATTGCTATTGCACGCACTGTTTTTTGATTTCTTCCATGTTCTCCTTCAGTGCTCTGGTGGGTCTTTAATGGCTGCCAAGGAGAAGGAGATGAACCGCAGTAATCCATAGGCGAA
GAAGAAGAGAAGGAGGAAGAGGTATATTCATTAAGTATATCACCTCAAGCTATCTTGTTACAGAAACAGCACATAACCACCATGGCACAACAGCCTCCCTGGAATGCTCATGAGTACTTACTGCAATTGGATTCAGCCCAAGAATACAACTACCCACAGACACCACCACAACAAGAACAACGCCCACATCATGATCATGC
TGATATGGAGCCCGAAACTTCAGGATCCGTGGAAGATAATGATAGGGACAGTTCTGCAGGGGATTCCAAGATCAATGGCGGTGAAGAGGCCAAGAAAATCGATGGATCCCCATGTGGGTCTTCTGTGAGCAAGGGTTTTACAGCCAGCAAACTCAATGCAAAGGCTCCAGAGTTCATTCCGAGAGGACCCTTGTCTCCCT
TGCAGGTACCCACAACGCCCCCCATGCTGCAACCTCAACAGAGCCGACCCGTTGTTTCTCAGCCCTTGCCACGGCTCATGATTCCCCAGAGCCCCCGCCCACAGGCCCTCCAGGTGTATTCAACAGGTTCTCCCAGAATGCCTGTTCAGTTCCCTGCATCCCCTGCTCAAGTGGGTCAGGCTTGTATTTCAGCCACCAGG
CCTCTTGCCCTTGGTTCTTCCCCACACTATTCCCCGGGTGGGGGGTTGGTTGAGTATTATGTTGAACACGAGGCTTCTGATGCAGAGAACATTGGGAATGCTGCTTCCAGTACTTCGGCTAAGGGCGGTGTTCTTACTGAAGAGCTCAGACAGAAAATTGTTAGACAGGTGGAGTATTATTTTAGTGATGCAAATCTTAG
TACAAATGACTATTTGATGAAATTTGTGAGTAAGGACCCGGAAGGATTTGTTCCTATTCCTGTTATTGCATCATTCAAGAAAGTGAAAAGCCTTATTAGTAACTATGCATTGGTCACAGCTGCGCTGAGGACGTCTTCGCAACTAGTCGTAAGTGAAGATGGGAAGAAAGTGAGAAGAGTGACCCCAATGTCAGATGCAG
AAATCGAAGAATTGCAATCACGCACAGTTGTTGCAGAAAATCTGCCAGAAGACCATACTAATGAAAACATCGAAAAAATATTTGCCGGTGTTGGCAGTGTAAAGACGGTGCGTATTTGCCATCCTCAGGCGGCTAATGGTTCCAACCTGTCAGGTTCAAGATATCCACGGACTGACATGCTCGTCAGTAACAAGGTAAAT
GAAATGAAATAGTGAATTAAACTTTATTCATTATTAATTGAAGTAGCAAATTAACATTCATATTTATTTGTAATTGTGTAGTAAAATAGCCTTTTCACATGTTGTGAAACCCTTGATGCAAATTAAGGTTCATAAGCTGGATTGTCATTAACATTCTCTAGAGTTCTATGATGTGCCAATCTCTTAGGTTTTCAGTGCAG
GGTCCAAAAGGAAGTTGATAGAAATGCTGTTTATATTATTGTTTCTGAGTGGGCCTAAAGGTTAAGAACATTTGTTTCCTCTTAGGAGGTCACAGGTTCAAATCTAGGGGTAGGGTATGTAGACCTCTGTAGACTTTAGCAGTTACATCATTGCTTAGAGGAGGGTCCTTTCTCCCACAAATAAGGGGATCTCATACACC
AAATTGGTGTCCAGCTTGACTGTGACCTTAAAAATAAATTATTATTGTTATAACTAAGATGTATTTGCGATTATCCTGACTTGAGCTATGGTGGTTGTAGCTGCATGCCCTAGTGGAGTATGAGACAGTTGAACAGGCTGAGAAAGCTGTAAGTTACAATGAACATATACAAACTATTAAGTGATACTATATATTGTATA
GGATGAGAAAACTTTCATGTTTGTCTTTCATCTTCCGTTTTATATTTTATTGTATTGGTAATCTGAACAGGTTGCAGAACTGAACGATGAGAGAAACTGGAGAAGCGGTCTTCGAGTGCGATTGTTACTTCGGCGAATGGTCAAGTCCGTTCATCAGACTAAAGTACGAAAACCAACAACGGAAAATATTGATAGCAATG
GTGAAGAAGAAGAGCTATCCACATCTGAAGCTGTTAATGACAAACAATTCGAAGATTCTCCACACCAATCTGAACGGCACGAGTTTATGGGAGATGAACAGCACTTCGCTGAAGGAGGAAGAAGAGGCAGAGGGCGAGGATGGGGAAGAGGTCGTGGACGTGGTCAACTTAGTAGTGGGCGTGGTCATCCAGTTGGCTCA
CCACAATCTTCTACTTCCTCTACCATTGAAGTCCAAGGGAAGCAACCGCCAGGACCTAGAATGCCAGATGGAACACGGGGCTTTACCATGGGTCGTGGAAAACCATTTGCTAATGAAATAGTTTAGGAATGGTTTAATTAACTGGACTCTTCGGGCCTTTGAACTTCATGTTTTAGGGATTGCAATCTGCAGTCCATGGA
CTCTGATAAAGGTCTTGTGAAGAATTTGTTTGCCATACAGAGGTTGTCTATTGGTTTGTGTTATTTAGGTCAAGGATAGATGTTGATAGAAGTTTTTTATGGGTTTATCAATTATGTAAAGAATTTCCACTTATACAAAATAGAGATCGGTGTTATCAGTATAGAATCTGGAGATCTGCACAAATGTAATTGTCTTCACC
TCCTTTACATGGAAAGGACAACGACAGATGCAGTGCACAAATCATAAGGGTTTAGATTTAATTTATTCTATCTGATGTAAAATATTTGCTCAATAATATTGAGTGAGGTGTTCCTTTTTGCGGTTTGCTGAATTCTGGAGCTTCATAGAACTCATTTGTATAGATAATATAAAAGAAACATACTATAACTATATTTTGGT
ACGATTTTTGTATGCCATTCAAATTTGT
>TRINITY_DN42944_c1_g1_i5 from sample A7 / Example unspliced isoform:CGATTGTTACTTCGGCGAATGgtatgtgatattatagcatgttgaatttagtcttgactgtttgctttatatgttctgctttggaaatgtggtgtgcatagaaatgatatggtctccccaatggatgtccaactttcagGTCAAGTCCGTTCATCAGACTAAAGTACGAAAACCAACAACGGAAAATATTGATAGCAATG
GTGAAGAAGAAGAGCTATCCACATCTGAAGCTGTTAATGACAAACAATTCGAAGATTCTCCACACCAATCTGAACGGCACGAGTTTATGGGAGATGAACAGCACTTCGCTGAAGGAGGAAGAAGAGGCAGAGGGCGAGGATGGGGAAGAGGTCGTGGACGTGGTCAACTTAGTAGTGGGCGTGGTCATCCAGTTGGCTCA
CCACAATCTTCTACTTCCTCTACCATTGAAGTCCAAGGGAAGCAACCGCCAGGACCTAGAATGCCAGATGGAACACGGGGCTTTACCATGGGTCGTGGAAAACCATTTGCTAATGAAATAGTTTAGGAATGGTTTAATTAACTGGACTCTTCGGGCCTTTGAACTTCATGTTTTAGGGATTGCAATCTGCAGTCCATGGA
CTCTGATAAAGGTCTTGTGAAGAATTTGTTTGCCATACAGAGGTTGTCTATTGGTTTGTGTTATTTAGGTCAAGGATAGATGTTGATAGAAGTTTTTTATGGGTTTATCAATTATGTAAAGAATTTCCACTTATACAAAATAGAGATCGGTGTTATCAGTATAGAATCTGGAGATCTGCACAAATGTAATTGTCTTCACC
TCCTTTACATGGAAAGGACAACGACAGATGCAGTGCACAAATCATAAGGGTTTAGATTTAATTTATTCTATCTGATGTAAAATATTTGCTCAATAATATTGAGTGAGGTGTTCCTTTTTGCGGTTTGCTGAATTCTGGAGCTTCATAGAACTCATTTGTATAGATAATATAAAAGAAACATACTATAACTATATTTTGGT
ACGATTTTTGTATGCCATTCAAATTTGT
Intron 4 GTAAGTTACA ... ATCTGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.92 | 214 | 0.8 | 62 |
| A2 | 21.23 | 151.9 | 0 | 40 |
| A3 | 26.65 | 142.3 | 1.7 | 51 |
| A4 | 27.08 | 144.9 | 8.1 | 53 |
| A5 | 29.32 | 76.1 | 0 | 31 |
| A6 | 27.64 | 233.2 | 4.4 | 87.5 |
| A7 | 28.41 | 620.3 | 5.2 | 243 |
| A8 | 28.83 | 643.5 | 4.7 | 258 |
| A9 | 28.65 | 574.6 | 7.9 | 228 |
| A10 | 25.87 | 483.1 | 1 | 166 |
>TRINITY_DN111167_c2_g3_i5 from sample A3 / Example spliced isoformCGGGATACTCTTGACATGGCAAAGAAAACTCAAAACTCAACCGAGGCCTGAAAAAACTGGAAAGGATCGATGCCTACGAGCAAGAAAAACAACAGATCCAATGCTATAATTCCGCTATAATTCTAAGTCAAGAGGATGAAGGATTATTCAATTGAAAATAAAAGATCCACTAAATTGGCAAAAATTCCCCTTAAAACCTA
AAAAAACCTTGAAAATTCAGACCGTTACAGAGATTTACTCAAGATTAGCCGTTTTCCCAACAATTGAATGATTTGGTTAGTCTTTAAAACAGCAACCCAAAGTAGGAAAATAGACAAAGAATTGCAAAGGGAGGGGAAGAGAGGGGAAGGCTGGTCATCGGGCCTCAAGCAGAGAGCAGATTGCTATTGCACGCACTGTT
TTTTGATTTCTTCCATGTTCTCCTTCAGTGCTCTGGTGGGTCTTTAATGGCTGCCAAGGAGAAGGAGATGAACCGCAGTAATCCATAGGCGAAGAAGAAGAGAAGGAGGAAGAGGTATATTCATTAAGTATATCACCTCAAGCTATCTTGTTACAGAAACAGCACATAACCACCATGGCACAACAGCCTCCCTGGAATGC
TCATGAGTACTTACTGCAATTGGATTCAGCCCAAGAATACAACTACCCACAGACACCACCACAACAAGAACAACGCCCACATCATGATCATGCTGATATGGAGCCCGAAACTTCAGGATCCGTGGAAGATAATGATAGGGACAGTTCTGCAGGGGATTCCAAGATCAATGGCGGTGAAGAGGCCAATAAAATCGATGGAT
CCCCATGTGGGTCTTCTGTGAGCAAGGGTTTTACAGCCAGCAAACTCAATGCAAAGGCTCCAGAGTTCATTCCGAGAGGACCCTTGTCTCCCTTGCAGGTACCCACAACGCCCCCCATGCTGCAACCTCAACAGAGCCGACCCGTTGTTTCTCAGCCCTTGCCACGGCTCATGATTCCCCAGAGCCCCCGCCCACAGGCC
CTCCAGGTGTATTCAACAGGTTCTCCCAGAATGCCTGTTCAGTTCCCTGCATCCCCTGCTCAAGTGGGTCAGGCTTGTATTTCAGCCACCAGGCCTCTTGCCCTTGGTTCTTCCCCACACTATTCCCCGGGTGGGGGGTTGGTTGAGTATTATGTTGAACACGAGGCTTCTGATGCAGAGAACATTGGGAATGCTGCTTC
CAGTACTTCGGCTAAGGGCGGTGTTCTTACTGAAGAGCTCAGACAGAAAATTGTTAGACAGGTGGAGTATTATTTTAGTGATGCAAATCTTAGTACAAATGACTATTTGATGAAATTTGTGAGTAAGGACCCGGAAGGATTTGTTCCTATTCCTGTTATTGCATCATTCAAGAAAGTGAAAAGCCTTATTAGTAACTATG
CATTGGTCACAGCTGCGCTGAGGACGTCTTCGCAACTAGTCGTAAGTGAAGATGGGAAGAAAGTGAGAAGAGTGACCCCAATGTCAGATGCAGAAATCGAAGAATTGCAATCACGCACAGTTGTTGCAGAAAATCTGCCAGAAGACCATACTAATGAAAACATCGAAAAAATATTTGCCGGTGTTGGCAGTGTAAAGACG
GTGCGTATTTGCCATCCTCAGGCGGCTAATGGTTCCAACCTGTCAGGTTCAAGATATCCACGGACTGACATGCTCGTCAGTAACAAGCTGCATGCCCTAGTGGAGTATGAGACAGTTGAACAGGCTGAGAAAGCTGTTGCAGAACTGAACGATGAGAGAAACTGGAGAAGCGGTCTTCGAGTGCGATTGTTACTTCGGCG
AATGGTCAAGTCCGTTCATCAGACTAAAGTACGAAAACCAACAACGGAAAATATTGATAGCAATGGTGAAGAAGAAGAGCTATCCACATCTGAAGCTGTTAATGACAAACAATTCGAAGATTCTCCACACCAATCTGAACGGCACGAGTTTATGGGAGATGAACAGCACTCCGCTGAAGGAGGAAGAAGAGGCAGAGGGC
GAGGATGGGGAAGAGGTCGTGGACGTGGTCAACTTAGTAGTGGGCGTGGTCATCCAGTTGGCTCACCACAATCTTCTACTTCCTCTACCATTGAAGTCCAAGGGAAGCAACCGCCAGGACCTAGAATGCCAGATGGAACACGGGGCTTTACCATGGGTCGTGGAAAACCATTTGCTAATGAAATAGTTTAGGAATGGTTT
AATTAACTGGACTCTTCGGGCCTTTGAACTTCATGTTTTAGGGATTGCAATCTGCAGTCCATGGACTCTGATAAAGGTCTTGTGAAGAATTTGTTTGCCATACAGAGGTTGTCTATTGGTTTGTGTTATTTAGGTCAAGGATAGATGTTGATAGAAGTTTTTTATGGGTTTATCAATTATGTAAAGAATTTCCACTTATA
CAAAATAGAGATCGGTGTTATCAGTATAGAATCTGGAGATCTGCACAAATGTAATTGTCTTCACCTCCTTTACATGGAAAGGACAACGACAGATGCAGTGCACAAATCATAAGGGTTTAGATTTAATTTATTCTATCTGATGTAAAATATTTGCTCAATAATATTGAGTGAGGTGTTCCTTTTTGCGGTTTGCTGAATTC
TGGAGCTTCATAGAACTCATTTGTATAGATAATATAAAAGAAACATACTATAACTATATTTTGGTACGATTTTTGTATGCCATTCAAATTTTTTACATCTGTTACTTGTGCAAACTGGCATTGATGATCTCCCAAAAATATTTTTTATCACAACTGTTATGATTTTTGTATGCCATTCAAACATTTTACATCTATTACTT
GTGCAAACTGGCTTTG
>TRINITY_DN111167_c2_g3_i6 from sample A3 / Example unspliced isoform:GTTGAACAGGCTGAGAAAGCTgtaagttacaatgaacatatacaaactattaagtgatactatatattgtataggatgagaaaactttcatgtttgtctttcatcttccgttttatattttattgtattggtaatctgaacagGTTGCAGAACTGAACGATGAGAGAAACTGGAGAAGCGGTCTTCGAGTGCGATTGTTA
CTTCGGCGAATGGTCAAGTCCGTTCATCAGACTAAAGTACGAAAACCAACAACGGAAAATATTGATAGCAATGGTGAAGAAGAAGAGCTATCCACATCTGAAGCTGTTAATGACAAACAATTCGAAGATTCTCCACACCAATCTGAACGGCACGAGTTTATGGGAGATGAACAGCACTCCGCTGAAGGAGGAAGAAGAGG
CAGAGGGCGAGGATGGGGAAGAGGTCGTGGACGTGGTCAACTTAGTAGTGGGCGTGGTCATCCAGTTGGCTCACCACAATCTTCTACTTCCTCTACCATTGAAGTCCAAGGGAAGCAACCGCCAGGACCTAGAATGCCAGATGGAACACGGGGCTTTACCATGGGTCGTGGAAAACCATTTGCTAATGAAATAGTTTAGG
AATGGTTTAATTAACTGGACTCTTCGGGCCTTTGAACTTCATGTTTTAGGGATTGCAATCTGCAGTCCATGGACTCTGATAAAGGTCTTGTGAAGAATTTGTTTGCCATACAGAGGTTGTCTATTGGTTTGTGTTATTTAGGTCAAGGATAGATGTTGATAGAAGTTTTTTATGGGTTTATCAATTATGTAAAGAATTTC
CACTTATACAAAATAGAGATCGGTGTTATCAGTATAGAATCTGGAGATCTGCACAAATGTAATTGTCTTCACCTCCTTTACATGGAAAGGACAACGACAGATGCAGTGCACAAATCATAAGGGTTTAGATTTAATTTATTCTATCTGATGTAAAATATTTGCTCAATAATATTGAGTGAGGTGTTCCTTTTTGCGGTTTG
CTGAATTCTGGAGCTTCATAGAACTCATTTGTATAGATAATATAAAAGAAACATACTATAACTATATTTTGGTACGATTTTTGTATGCCATTCAAATTTTTTACATCTGTTACTTGTGCAAACTGGCATTGATGATCTCCCAAAAATATTTTTTATCACAACTGTTATGATTTTTGTATGCCATTCAAACATTTTACATC
TATTACTTGTGCAAACTGGCTTTG
Intron 5 GTATGTAATT ... TGCTATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 8.96 | 273 | 19.7 | 30.3 |
| A2 | 7.81 | 206.3 | 14.8 | 19.7 |
| A3 | 6.98 | 222.8 | 16.5 | 17.7 |
| A4 | 8.18 | 158.2 | 5.7 | 15.7 |
| A5 | 11.63 | 97.3 | 5.3 | 14.3 |
| A6 | 7.87 | 254 | 12.2 | 24 |
| A7 | 6.35 | 723.8 | 37 | 54 |
| A8 | 7.57 | 716.8 | 42.8 | 66.3 |
| A9 | 6.2 | 644.5 | 45.5 | 46.7 |
| A10 | 8.14 | 575.3 | 31.3 | 55.7 |
>TRINITY_DN120486_c0_g1_i3 from sample A1 / Example spliced isoformCTTTCACGGGATACTCTTGACATGGCAAAGAAAACTCAAAACTCAACCGAGGCCTGAAAAAACTGGAAAGGATCGATGCCTACGAGCAAGAAAAACAACAGATCCAATGCTATAATTCCGCTATAATTCTAAGTCAAGAGGATGAAGGATTATTCAATTGAAAATAAAAGATCCACTAAATTGGCAAAAATTCCCCTTAA
AACCTAAAAAAACCTTGAAAATTCAGACCGTTACAGAGATTTACTCAAGATTAGCCGTTTTCCCAACAATTGAATGATTTGGTTAGTCTTTAAAACAGCAACCCAAAGTAGGAAAATAGACAAAGAATTGCAAAGGGAGGGGAAGAGAGGGGAAGGCTGGTCATCGGGCCTCAAGCAGAGAGCAGATTGCTATTGCACGC
ACTGTTTTTTGATTTCTTCCATGTTCTCCTTCAGTGCTCTGGTGGGTCTTTAATGGCTGCCAAGGAGAAGGAGATGAACCGCAGTAATCCATAGGCGAAGAAGAAGAGAAGGAGGAAGAGGTATATTCATTAAGTATATCACCTCAAGCTATCTTGTTACAGAAACAGCACATAACCACCATGGCACAACAGCCTCCCTG
GAATGCTCATGAGTACTTACTGCAATTGGATTCAGCCCAAGAATACAACTACCCACAGACACCACCACAACAAGAACAACGCCCACATCATGATCATGCTGATATGGAGCCCGAAACTTCAGGATCCGTGGAAGATAATGATAGGGACAGTTCTGCAGGGGATTCCAAGATCAATGGCGGTGAAGAGGCCAAGAAAATCG
ATGGATCCCCATGTGGGTCTTCTGTGAGCAAGGGTTTTACAGCCAGCAAACTCAATGCAAAGGCTCCAGAGTTCATTCCGAGAGGACCCTTGTCTCCCTTGCAGGTACCCACAACGCCCCCCATGCTGCAACCTCAACAGAGCCGACCCGTTGTTTCTCAGCCCTTGCCACGGCTCATGATTCCCCAGAGCCCCCGCCCA
CAGGCCCTCCAGGTGTATTCAACAGGTTCTCCCAGAATGCCTGTTCAGTTCCCTGCATCCCCTGCTCAAGTGGGTCAGGCTTGTATTTCAGCCACCAGGCCTCTTGCCCTTGGTTCTTCCCCACACTATTCCCCGGGTGGGGGGTTGGTTGAGTATTATGTTGAACACGAGGCTTCTGATGCAGAGAACATTGGGAATGC
TGCTTCCAGTACTTCGGCTAAGGGCGGTGTTCTTACTGAAGAGCTCAGACAGAAAATTGTTAGACAGGTGGAGTATTATTTTAGTGATGCAAATCTTAGTACAAATGACTATTTGATGAAATTTGTGAGTAAGGACCCGGAAGGATTTGTTCCTATTCCTGTTATTGCATCATTCAAGAAAGTGAAAAGCCTTATTAGTA
ACTATGCATTGGTCACAGCTGCGCTGAGGACGTCTTCGCAACTAGTCGTAAGTGAAGATGGGAAGAAAGTGAGAAGAGTGACCCCAATGTCAGATGCAGAAATCGAAGAATTGCAATCACGCACAGTTGTTGCAGAAAATCTGCCAGAAGACCATACTAATGAAAACATCGAAAAAATATTTGCCGGTGTTGGCAGTGTA
AAGACGGTGCGTATTTGCCATCCTCAGGCGGCTAATGGTTCCAACCTGTCAGGTTCAAGATATCCACGGACTGACATGCTCGTCAGTAACAAGGTAAATGAAATGAAATAGTGAATTAAACTTTATTCATTATTAATTGAAGTAGCAAATTAACATTCATATTTATTTGTAATTGTGTAGTAAAATAGCCTTTTCACATG
TTGTGAAACCCTTGATGCAAATTA
>TRINITY_DN120486_c0_g1_i5 from sample A1 / Example unspliced isoform:CTTTCACGGGATACTCTTGACATGGCAAAGAAAACTCAAAACTCAACCGAGGCCTGAAAAAACTGGAAAGGATCGATGCCTACGAGCAAGAAAAACAACAGATCCAATGCTATAATTCCGCTATAATTCTAAGTCAAGAGGATGAAGGATTATTCAATTGAAAATAAAAGATCCACTAAATTGGCAAAAATTCCCCTTAA
AACCTAAAAAAACCTTGAAAATTCAGACCGTTACAGAGATTTACTCAAGATTAGCCGTTTTCCCAACAATTGAATGATTTGGTTAGTCTTTAAAACAGCAACCCAAAGTAGGAAAATAGACAAAGAATTGCAAAGGGAGGGGAAGAGAGGGGAAGGCTGGTCATCGGGCCTCAAGCAGAGAGCAGATTGCTATTGCACGC
ACTGTTTTTTGATTTCTTCCATGTTCTCCTTCAGTGCTCTGGTGGGTCTTTAATGGCTGCCAAGGAGAAGGAGATGAACCGCAGTAATCCATAGGCGAAGAAGAAGAGAAGGAGGAAGAGGTATATTCATTAAGTATATCACCTCAAGCTATCTTGTTACAGAAACAGCACATAACCACCATGGCACAACAGCCTCCCTG
GAATGCTCATGAGTACTTACTGCAATTGGATTCAGCCCAAGAATACAACTACCCACAGACACCACCACAACAAGAACAACGCCCACATCATGATCATGCTGATATGGAGCCCGAAACTTCAGGATCCGTGGAAGATAATGATAGGGACAGTTCTGCAGGGGATTCCAAGATCAATGGCGGTGAAGAGGCCAAGAAAATCG
ATGGATCCCCATGTGGGTCTTCTGTGAGCAAGGGTTTTACAGCCAGCAAACTCAATGCAAAGGCTCCAGAGTTCATTCCGAGAGGACCCTTGTCTCCCTTGCAGGTACCCACAACGCCCCCCATGCTGCAACCTCAACAGAGCCGACCCGTTGTTTCTCAGCCCTTGCCACGGCTCATGATTCCCCAGAGCCCCCGCCCA
CAGGCCCTCCAGGTGTATTCAACAGGTTCTCCCAGAATGCCTGTTCAGTTCCCTGCATCCCCTGCTCAAGTGGGTCAGGCTTGTATTTCAGCCACCAGGCCTCTTGCCCTTGGTTCTTCCCCACACTATTCCCCGGGTGGGGGGTTGGTTGAGTATTATGTTGAACACGAGGCTTCTGATGCAGAGAACATTGGGAATGC
TGCTTCCAGTACTTCGGCTAAGGGCGGTGTTCTTACTGAAGAGCTCAGACAGAAAATTGTTAGACAGGTGGAGTATTATTTTAGTGATGCAAATCTTAGTACAAATGACTATTTGATGAAATTTGTGAGTAAGGACCCGGAAGGATTTGTTCCTATTCCTGTTATTGCATCATTCAAGAAAGTGAAAAGCCTTATTAGTA
ACTATGCATTGGTCACAGCTGCGCTGAGGACGTCTTCGCAACTAGTCGTAAGTGAAGATGGGAAGAAAGTGAGAAGAGTGACCCCAATGTCAGATGCAGAAATCGAAGAATTGCAAGTAATCATTCTTTATTTTACTATTTCCAAAGATAATTACCAATATGGACCTGCTTTTTTTATTTTTCTTTGGCATTGTGTGAAT
GCACCATAGTTATCGTTCTTCCAATTTGCAGTCACGCACAGTTGTTGCAGAAAATCTGCCAGAAGACCATACTAATGAAAACATCGAAAAAATATTTGCCGGTGTTGGCAGgtatgtaattaatgccagtttgtctttacatgaattttcgatgattcaatcagtctggagcttgtttgagtaaaatatgttgaagttca
aataccatctctgcttgggctgctatacagTGTAAAGACGGTGCGTATTTGCCATCCTCAGGCGGCTAATGGTTCCAACCTGTCAGGTTCAAGATATCCACGGACTGACATGCTCGTCAGTAACAAG
Intron 6 GTAAGCGGAT ... CCCAGCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 49.07 | 55 | 13 | 53 |
| A2 | 47.01 | 71 | 11 | 63 |
| A3 | 44.21 | 106 | 11 | 84 |
| A4 | 48.2 | 72 | 2 | 67 |
| A5 | 49.25 | 34 | 2 | 33 |
| A6 | 45.76 | 377 | 35 | 318 |
| A7 | 47.99 | 323 | 39 | 298 |
| A8 | 45.87 | 282 | 35 | 239 |
| A9 | 46.02 | 346 | 41 | 295 |
| A10 | 49.22 | 327 | 38 | 317 |
>TRINITY_DN41710_c1_g1_i10 from sample A8 / Example spliced isoformAGCATATTTGGTATTTCAGGGAAAATGAATTTTTAGAAGTGTCAAATTTGGACTCTCCAAAATGGGATTGGTAGTACCAGATTCCTTCATTGGGAGGGGTAGTATATGACTACGACTACGGCCCTCCACGTAAAGGTTATGTAGATTGATTTTGATGCTGACCAACAGCAGCGACAACGAAGGGAATCAAGTGGAAGAGG
AGGGGGTGAGTTCGATCCGTAGCCATGTCGGACGAGGAGCACCAGTTCGACCACAAGGGTGAATCGGGGGCTTCTAAGACTTTTCCCCAGCAGGCCGGTGCAATTCGCAAGAACGGTTACATTGTGATCAAGGGAAGACCTTGCAAGGTGGTTGAAGTCTCGACATCGAAGACTGGAAAGCATGGGCATGCAAAATGTCA
TTTTGTAGCCATTGATATATTTACTTCAAAAAAGCTTGAAGATATCGTTCCTTCCTCTCATAACTGTGATATTCCAGAGGTCGTTCGCACTGATTACCAACTCATTGACATTTCAGAGGATGGCTTCGTGAGCCTGCTTACAGATAGCGGAGACACTAAAGATGACCTACGTCTTCCAAATGATGATCAGCTTGTTTCTC
AGATTAAGGATGGTTTTGCAGAAGGAAAGGATTTGATTGTGACTGTGATGTCTGCTATGGGGGAGGAGCAGATTTCTGCTCTCAAAGACATTGGGCCCAAATAGTCTGGAGGGAATGTTAGCAAGGAAATTGTTTTGTACTCGCTGTTTCTCGTTATATAGTGATTTTCTCTAGAAAACAACAAACTTTAATCTAGAAAA
TGTAAGTTGTACAGGAAATGGGTAGGTGATGTTTTCAGCAACAATACCAGGTTATGATATTTTTGCTATCTTCAAAAACACTTCATGACATTAATGTGTTTTTGACTTTGGACTCTCTAGTTGATGCTGGAGAGAGACTGGAAGCTGTGGGATTCATTATATCATATAGGAATATTTGGTAACCAAGCACATTATATCAT
ATAGGAATATTTGGTAACCAAGCACTGTACCTTATTTTGTTACTCCTATATCTTTTGGCTATGTGTTGCATGTGGGCCTAACAGTTAAGAAGATGTGTTTCCTCTTAGGAGGTCACAGGTTCAAATCTGGAGGGGGTTAGGTTATGTATATCTCTGTAGACTGTAGCAGTCAAATTGCTTTGTGGAGGGGGTCTCTTGTC
CCACTAACAAGGGGGTCTCAGACACCAATTTGGTGTCTAGCTAGGCTGTGACCTTAAAATTAAATTATTATTATTATTATTATAGAGGTTTGTTTTTTAGAATTGCTGG
>TRINITY_DN41710_c1_g1_i8 from sample A8 / Example unspliced isoform:CGAAGGGAATCAAGTGGAAGAGgtaagcggatcgattcccaagccgggggcttttcttcccagctcagGAGGGGGTGAGTTCGATCCGTAGCCATGTCGGACGAGGAGCACCAGTTCGACCACAAGGGTGAATCGGGGGCTTCTAAGACTTTTCCCCAGCAGGCCGGTGCAATTCGCAAGAACGGTTACATTGTGATCAA
GGGAAGACCTTGCAAGGTGGTTGAAGTCTCGACATCGAAGACTGGAAAGCATGGGCATGCAAAATGTCATTTTGTAGCCATTGATATATTTACTTCAAAAAAGCTTGAAGATATCGTTCCTTCCTCTCATAACTGTGATATTCCAGAGGTCGTTCGCACTGATTACCAACTCATTGACATTTCAGAGGATGGCTTCGTGA
GCCTGCTTACAGATAGCGGAGACACTAAAGATGACCTACGTCTTCCAAATGATGATCAGCTTGTTTCTCAGATTTTGAAGAGCTTGTTGGGTGGGAAGGCGAGCACACCCAACAAGTTTGAAGATATTTTAAAGCCTCACCTTGGCGATCCCATTTGTTGGTGTGAGGCTCTACTGCAAGTCCACACAAAGAGGATGATA
ACATTGCGGATTTTGGGCTTATTAGGCAGCCACATAAAACTGAAAAATTTTGCAGAAAATTTAACTAGTATTTTCCAGCCATATGTGACAATGAATCTTGCAAATTTTTTGAAGCATATAGGGGCAAATATTTGGTTATGATTTTGTAGATTTGTTTAAGCCATATATTCTCTTATCTCTTTTCTTCTTCATGCCATATA
TTCTCTTATCTCTTTCCTTCTTCATGCATGAACTTTCAGATAAATCAGATATACTTAGGGCTAAATTTTGCTTATGCCAACATACTTATTAGATTGTCATATTTTGCAAAAAATTTCAACCCTCATTCGTGATTAAAAATGTTATTTTTTTTTCTTAAGATTCTGGGGGTGGTTTTGTGATTATGAAAATTCAAAA
Intron 7 GTAAATGAAA ... GTGGTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.49 | 259.2 | 69.7 | 13.3 |
| A2 | 18.72 | 164.7 | 41.3 | 8.3 |
| A3 | 15.79 | 130.2 | 26.7 | 11 |
| A4 | 21.52 | 154 | 46.3 | 12 |
| A5 | 19.75 | 81.5 | 22 | 3.7 |
| A6 | 20.5 | 218.8 | 60.3 | 12.7 |
| A7 | 15.53 | 533.2 | 107.3 | 35.3 |
| A8 | 17.8 | 588 | 141 | 42 |
| A9 | 18.38 | 495 | 123.7 | 34 |
| A10 | 17.62 | 470.5 | 107.3 | 25.3 |
>TRINITY_DN42328_c3_g2_i1 from sample A6 / Example spliced isoformAGAAAACTCAAAACTCAACCGAGGCCTGAAAAAACTGGAAAGGATCGATGCCTACGAGCAAGAAAAACAACAGATCCAATGCTATAATTCCGCTATAATTCTAAGTCAAGAGGATGAAGGATTATTCAATTGAAAATAAAAGATCCACTAAATTGGCAAAAATTCCCCTTAAAACCTAAAAAAACCTTGAAAATTCAGAC
CGTTACAGAGATTTACTCAAGATTAGCCGTTTTCCCAACAATTGAATGATTTGGTTAGTCTTTAAAACAGCAACCCAAAGTAGGAAAATAGACAAAGAATTGCAAAGGGAGGGGAAGAGAGGGGAAGGCTGGTCATCGGGCCTCAAGCAGAGAGCAGATTGCTATTGCACGCACTGTTTTTTGATTTCTTCCATGTTCTC
CTTCAGTGCTCTGGTGGGTCTTTAATGGCTGCCAAGGAGAAGGAGATGAACCGCAGTAATCCATAGGCGAAGAAGAAGAGAAGGAGGAAGAGGTATATTCATTAAGTATATCACCTCAAGCTATCTTGTTACAGAAACAGCACATAACCACCATGGCACAACAGCCTCCCTGGAATGCTCATGAGTACTTACTGCAATTG
GATTCAGCCCAAGAATACAACTACCCACAGACACCACCACAACAAGAACAACGCCCACATCATGATCATGCTGATATGGAGCCCGAAACTTCAGGATCCGTGGAAGATAATGATAGGGACAGTTCTGCAGGGGATTCCAAGATCAATGGCGGTGAAGAGGCCAAGAAAATCGATGGATCCCCATGTGGGTCTTCTGTGAG
CAAGGGTTTTACAGCCAGCAAACTCAATGCAAAGGCTCCAGAGTTCATTCCGAGAGGACCCTTGTCTCCCTTGCAGGTACCCACAACGCCCCCCATGCTGCAACCTCAACAGAGCCGACCCGTTGTTTCTCAGCCCTTGCCACGGCTCATGATTCCCCAGAGCCCCCGCCCACAGGCCCTCCAGGTGTATTCAACAGGTT
CTCCCAGAATGCCTGTTCAGTTCCCTGCATCCCCTGCTCAAGTGGGTCAGGCTTGTATTTCAGCCACCAGGCCTCTTGCCCTTGGTTCTTCCCCACACTATTCCCCGGGTGGGGGGTTGGTTGAGTATTATGTTGAACACGAGGCTTCTGATGCAGAGAACATTGGGAATGCTGCTTCCAGTACTTCGGCTAAGGGCGGT
GTTCTTACTGAAGAGCTCAGACAGAAAATTGTTAGACAGGTGGAGTATTATTTTAGTGATGCAAATCTTAGTACAAATGACTATTTGATGAAATTTGTGAGTAAGGACCCGGAAGGATTTGTTCCTATTCCTGTTATTGCATCATTCAAGAAAGTGAAAAGCCTTATTAGTAACTATGCATTGGTCACAGCTGCGCTGAG
GACGTCTTCGCAACTAGTCGTAAGTGAAGATGGGAAGAAAGTGAGAAGAGTGACCCCAATGTCAGATGCAGAAATCGAAGAATTGCAATCACGCACAGTTGTTGCAGAAAATCTGCCAGAAGACCATACTAATGAAAACATCGAAAAAATATTTGCCGGTGTTGGCAGTGTAAAGACGGTGCGTATTTGCCATCCTCAGG
CGGCTAATGGTTCCAACCTGTCAGGTTCAAGATATCCACGGACTGACATGCTCGTCAGTAACAAGCTGCATGCCCTAGTGGAGTATGAGACAGTTGAACAGGCTGAGAAAGCTGTTGCAGAACTGAACGATGAGAGAAACTGGAGAAGCGGTCTTCGAGTGCGATTGTTACTTCGGCGAATGGTCAAGTCCGTTCATCAG
ACTAAAGTACGAAAACCAACAACGGAAAATATTGATAGCAATGGTGAAGAAGAAGAGCTATCCACATCTGAAGCTGTTAATGACAAACAATTCGAAGATTCTCCACACCAATCTGAACGGCACGAGTTTATGGGAGATGAACAGCACTTCGCTGAAGGAGGAAGAAGAGGCAGAGGGCGAGGATGGGGAAGAGGTCGTGG
ACGTGGTCAACTTAGTAGTGGGCGTGGTCATCCAGTTGGCTCACCACAATCTTCTACTTCCTCTACCATTGAAGTCCAAGGGAAGCAACCGCCAGGACCTAGAATGCCAGATGGAACACGGGGCTTTACCATGGGTCGTGGAAAACCATTTGCTAATGAAATAGTTTAGGAATGGTTTAATTAACTGGACTCTTCGGGCC
TTTGAACTTCATGTTTTAGGGATTGCAATCTGCAGTCCATGGACTCTGATAAAGGTCTTGTGAAGAATTTGTTTGCCATACAGAGGTTGTCTATTGGTTTGTGTTATTTAGGTCAAGGATAGATGTTGATAGAAGTTTTTTATGGGTTTATCAATTATGTAAAGAATTTCCACTTATACAAAATAGAGATCGGTGTTATC
AGTATAGAATCTGGAGATCTGCACAAATGTAATTGTCTTCACCTCCTTTACATGGAAAGGACAACGACAGATGCAGTGCACAAATCATAAGGGTTTAGATTTAATTTATTCTATCTGATGTAAAATATTTGCTCAATAATATTGAGTGAGGTGTTCCTTTTTGCGGTTTGCTGAATTCTGGAGCTTCATAGAACTCATTT
GTATAGATAATATAAAAGAAACATACTATAACTATATTTTGGTACGATTTTTGTATGCCATTCAAATTTTTTACATCTGTTACTTGTGCAAACTGGCATTGATGATCTCCCAAAAATATTTTTTAT
>TRINITY_DN42328_c3_g2_i6 from sample A6 / Example unspliced isoform:AAAATATTTGCCGGTGTTGGCAGGTATGTAATTAATGCCAGTTTGTCTTTACATGAATTTTCGATGATTCAATCAGTCTGGAGCTTGTTTGAGTAAAATATGTTGAAGTTCAAATACCATCTCTGCTTGGGCTGCTATACAGTGTAAAGACGGTGCGTATTTGCCATCCTCAGGCGGCTAATGGTTCCAACCTGTCAGGT
TCAAGATATCCACGGACTGACATGCTCGTCAGTAACAAGgtaaatgaaatgaaatagtgaattaaactttattcattattaattgaagtagcaaattaacattcatatttatttgtaattgtgtaggaaaatagccttttcacatgttgtgaaacccttgatgcaaattaaggttcataagctggattgtcattaacatt
ctctagagttctatgatgtgccaatctcttaggttttcagtgcagggtccaaaaggaagttgatagaaatgctgtttatattattgtttctgagtgggcctaaaggttaagaacatttgtttcctcttaggaggtcacaggttcaaatctaggggtagggtatgtagacctctgtagactttagcagttacatcattgct
tagaggagggtcccttctcccacaaataaggggatctcatacaccaaattggtgtccagcttgactgtgaccttaaaaataaattattattgttataactaagatgtatttgcgattatcctgacttgagctatggtggttgtagCTGCATGCCCTAGTGGAGTATGAGACAGTTGAACAGGCTGAGAAAGCTGTAAGTT
ACAATGAACATATACAAACTATTAAGTGATACTATATATTGTATAGGATGAGAAAACTTTCATGTTTGTCTTTCATCTTCCGTTTTATATTTTATTGTATTGGTAATCTGAACAGGTTGCAGAACTGAACGATGAGAGAAACTGGAGAAGCGGTCTTCGAGTGCGATTGTTACTTCGGCGAATGGTCAAGTCCGTTCATC
AGACTAAAGTACGAAAACCAACAACGGAAAATATTGATAGCAATGGTGAAGAAGAAGAGCTATCCACATCTGAAGCTGTTAATGACAAACAATTCGAAGATTCTCCACACCAATCTGAACGGCACGAGTTTATGGGAGATGAACAGCACTTCGCTGAAGGAGGAAGAAGAGGCAGAGGGCGAGGATGGGGAAGAGGTCGT
GGACGTGGTCAACTTAGTAGTGGGCGTGGTCATCCAGTTGGCTCACCACAATCTTCTACTTCCTCTACCATTGAAGTCCAAGGGAAGCAACCGCCAGGACCTAGAATGCCAGATGGAACACGGGGCTTTACCATGGGTCGTGGAAAACCATTTGCTAATGAAATAGTTTAGGAATGGTTTAATTAACTGGACTCTTCGGG
CCTTTGAACTTCATGTTTTAGGGATTGCAATCTGCAGTCCATGGACTCTGATAAAGGTCTTGTGAAGAATTTGTTTGCCATACAGAGGTTGTCTATTGGTTTGTGTTATTTAGGTCAAGGATAGATGTTGATAGAAGTTTTTTATGGGTTTATCAATTATGTAAAGAATTTCCACTTATACAAAATAGAGATCGGTGTTA
TCAGTATAGAATCTGGAGATCTGCACAAATGTAATTGTCTTCACCTCCTTTACATGGAAAGGACAACGACAGATGCAGTGCACAAATCATAAGGGTTTAGATTTAATTTATTCTATCTGATGTAAAATATTTGCTCAATAATATTGAGTGAGGTGTTCCTTTTTGCGGTTTGCTGAATTCTGGAGCTTCATAGAACTCAT
TTGTATAGATAATATAAAAGAAACATACTATAACTATATTTTGGTACGATTTTTGTATGCCATTCAAATTTTTTACATCTGTTACTTGTGCAAACTGGCATTGATGATCTCCCAAAAATATTTTTTAT
Intron 8 GTGTGTCAAT ... TGTTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.35 | 224.7 | 47 | 54 |
| A2 | 13.01 | 214 | 31 | 33 |
| A3 | 13.89 | 217 | 34 | 36 |
| A4 | 15.21 | 139.3 | 40 | 10 |
| A5 | 19.47 | 70.3 | 19 | 15 |
| A6 | 15.34 | 480 | 106 | 68 |
| A7 | 17 | 886 | 200 | 163 |
| A8 | 15.57 | 1296 | 262 | 216 |
| A9 | 15.35 | 924 | 190 | 145 |
| A10 | 16.18 | 810.7 | 171 | 142 |
>TRINITY_DN41710_c1_g1_i7 from sample A8 / Example spliced isoformCGATTGTTACTTCGGCGAATGGTATGTGATATTATAGCATGTTGAATTTAGTCTTGACTGTTTGCTTTATATGTTCTGCTTTGGAAATGTGGTGTGCATAGAAATGATATGGTCTCCCCAATGGATGTCCAACTTTCAGGTCAAGTCCGTTCATCAGACTAAAGTACGAAAACCAACAACGGAAAATATTGATAGCAATG
GTGAAGAAGAAGAGCTATCCACATCTGAAGCTGTTAATGACAAACAATTCGAAGATTCTCCACACCAATCTGAACGGCACGAGTTTATGGGAGATGAACAGCACTCCGCTGAAGGAGGAAGAAGAGGCAGAGGGCGAGGATGGGGAAGAGGTCGTGGACGTGGTCAACTTAGTAGTGGGCGTGGTCATCCAGTTGGCTCA
CCACAATCTTCTACTTCCTCTACCATTGAAGTCCAAGGGAAGCAACCGCCAGGACCTAGAATGCCAGATGGAACACGGGGCTTTACCATGGGTCGTGGAAAACCATTTGCTAATGAAATAGTTTAGGAATGGTTTAATTAACTGGACTCTTCGGGCCTTTGAACTTCATGTTTTAGGGATTGCAATCTGCAGTCCATGGA
CTCTGATAAAGGTCTTGTGAAGAATTTGTTTGCCATACAGAGGTTGTCTATTGGTTTGTGTTATTTAGGTCAAGGATAGATGTTGATAGAAGTTTTTTATGGGTTTATCAATTATGTAAAGAATTTCCACTTATACAAAATAGAGATCGGTGTTATCAGTATAGAATCTGGAGATCTGCACAAATGTAATTGTCTTCACC
TCCTTTACATGGAAAGGACAACGACGGATGCAGTGCACAAATCATAAGGGTTTAGATTTAATTTATTCTATCTGATGTAAAATATTTGCTCAATAATATTGAGTGAGGTGTTCCTTTTTGCGGTTTGCTGAATTCTGGAGCTTCATAGAACTCATTTGTATAGATAATATAAAAGAAACATACTATAACTATATTTTGGT
ACGATTTTTGTATGCCATTCAAATTTTTTACATCTGTTACTTGTGC
>TRINITY_DN41710_c1_g1_i5 from sample A8 / Example unspliced isoform:TTACAATCTTTCACGGGATACTCTTGACATGGCAAAGAAAACTCAAAACTCAACCGAGGCCTGAAAAAACTGGAAAGGATCGATGCCTACGAGTAAGAAAAACAACAGATCCAATGCTATAATTCCGCTATAATTCTAAGTCAAGAGGATGAAGGATTATTCAATTGAAAATAAAAGATCCACTAAATTGGCAAAAATTC
CCCTTAAAACCTAAAAAAACCTTGAAAATTCAGACCGTTACAGAGATTTACTCAAGATTAGCCGTTTTCCCAACAATTGAATGATTTGGTTAGTCTTTAAAACAGCAACCCAAAGTAGGAAAATAGACAAAGAATTGCAAAGGGAGGGGAAGAGAGGGGAAGGCTGGTCATCGGGCCTCAAGCAGAGAGCAGATTGCTAT
TGCACGCACTGTTTTTTGATTTCTTCCATGTTCTCCTTCAGTGCTCTGGTGGGTCTTTAATGGCTGCCAAGGAGAAGGAGATGAACCGCAGTAATCCATAGGCGAAGAAGAAGAGAAGGAGGAAGAGGTATATTCATTAAGTATATCACCTCAAGCTATCTTGTTACAGAAACAGCACATAACCACCATGGCACAACAGC
CTCCCTGGAATGCTCATGAGTACTTACTGCAATTGGATTCAGCCCAAGAATACAACTACCCACAGACACCACCACAACAAGAACAACGCCCACATCATGATCATGCTGATATGGAGCCCGAAACTTCAGGATCCGTGGAAGATAATGATAGGGACAGTTCTGCAGGGGATTCCAAGATCAATGGCGGTGAAGAGGCCAAT
AAAATCGATGGATCCCCATGTGGGTCTTCTGTGAGCAAGGGTTTTACAGCCAGCAAACTCAATGCAAAGGCTCCAGAGTTCATTCCGAGAGGACCCTTGTCTCCCTTGCAGGTACCCACAACGCCCCCCATGCTGCAACCTCAACAGAGCCGACCCGTTGTTTCTCAGCCCTTGCCACGGCTCATGATTCCCCAGAGCCC
CCGCCCACAGGCCCTCCAGGTGTATTCAACAGGTTCTCCCAGAATGCCTGTTCAGTTCCCTGCATCCCCTGCTCAAGTGGGTCAGGCTTGTATTTCAGCCACCAGGCCTCTTGCCCTTGGTTCTTCCCCACACTATTCCCCGGGTGGGGGGTTGGTTGAGTATTATGTTGAACACGAGGCTTCTGATGCAGAGAACATTG
GGAATGCTGCTTCCAGTACTTCGGCTAAGGGCGGTGTTCTTACTGAAGAGCTCAGACAGAAAATTGTTAGACAGGTGGAGTATTATTTTAGTGATGCAAATCTTAGTACAAATGACTATTTGATGAAATTTGTGAGTAAGGACCCGGAAGGATTTGTTCCTATTCCTGTTATTGCATCATTCAAGAAAGTGAAAAGCCTT
ATTAGTAACTATGCATTGGTCACAGCTGCGCTGAGGACGTCTTCGCAACTAGTCGTAAGTGAAGATGGGAAGAAAGTGAGAAGAGTGACCCCAATGTCAGATGCAGAAATCGAAGAATTGCAATCACGCACAGTTGTTGCAGAAAATCTGCCAGAAGACCATACTAATGAAAACATCGAAAAAATATTTGCCGGTGTTGG
CAGTGTAAAGACGGTGCGTATTTGCCATCCTCAGGCGGCTAATGGTTCCAACCTGTCAGGTTCAAGATATCCACGGACTGACATGCTCGTCAGTAACAAGCTGCATGCCCTAGTGGAGTATGAGACAGTTGAACAGGCTGAGAAAGCTGTTGCAGAACTGAACGATGAGAGAAACTGGAGAAGCGGTCTTCGAGTGCGAT
TGTTACTTCGGCGAATGGTCAAGTCCGTTCATCAGACTAAAGTACGAAAACCAACAACGGAAAATATTGATAGCAATGGTGAAGAAGAAGAGCTATCCACATCTGAAGCTGTTAATGACAAACAATTCGAAGATTCTCCACACCAATCTGAACGGCACGAGTTTATGgtgtgtcaattttctcttcattatgttttccat
tgtagaagttaaattcggatgtccagagcagaagttaaatagatattctgttttacagGGAGATGAACAGCACTTCGCTGAAGGAGGAAGAAGAGGCAGAGGGCGAGGATGGGGAAGAGGTCGTGGACGTGGTCAACTTAGTAGTGGGCGTGGTCATCCAGTTGGCTCACCACAATCTTCTACTTCCTCTACCATTGAAG
TCCAAGGGAAGCAACCGCCAGGACCTAGAATGCCAGATGGAACACGGGGCTTTACCATGGGTCGTGGAAAACCATTTGCTAATGAAATAGTTTAGGAATGGTTTAATTAACTGGACTCTTCGGGCCTTTGAACTTCATGTTTTAGGGATTGCAATCTGCAGTCCATGGACTCTGATAAAGGTCTTGTGAAGAATTTGTTT
GCCATACAGAGGTTGTCTATTGGTTTGTGTTATTTAGGTCAAGGATAGATGTTGATAGAAGTTTTTTATGGGTTTATCAATTATGTAAAGAATTTCCACTTATACAAAATAGAGATCGGTGTTATCAGTATAGAATCTGGAGATCTGCACAAATGTAATTGTCTTCACCTCCTTTACATGGAAAGGACAACGACGGATGC
AGTGCACAAATCATAAGGGTTTAGATTTAATTTATTCTATCTGATGTAAAATATTTGCTCAATAATATTGAGTGAGGTGTTCCTTTTTGCGGTTTGCTGAATTCTGGAGCTTCATAGAACTCATTTGTATAGATAATATAAAAGAAACATACTATAACTATATTTTGGTACGATTTTTGTATGCCATTCAAATTTTTTAC
ATCTGTTACTTGTGC