sp|Q8L607|SIN2_ARATH ----> Short integuments 2, mitochondrial
Intron 1 GTACATCATC ... GTTTCTCCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.86 | 6 | 8 | 1 |
| A2 | 25 | 3 | 2 | 0 |
| A3 | 17.65 | 7 | 2 | 1 |
| A4 | 60 | 1 | 3 | 0 |
| A5 | 42.86 | 2 | 1 | 2 |
| A6 | 42.86 | 4 | 2 | 4 |
| A7 | 27.27 | 4 | 2 | 1 |
| A8 | 55.56 | 4 | 8 | 2 |
| A9 | 28 | 9 | 5 | 2 |
| A10 | 27.27 | 8 | 5 | 1 |
>TRINITY_DN42255_c0_g2_i2 from sample A6 / Example spliced isoformCGTGCCTTTGCGCTGGAAAGGCTTGAATACTGAGAGCTGCGAAGAATCTTCGAATTTCTGTCCAGAGGATCTTACAGTGAAGGGACCAAAAGACACTCCAAATGAGAAAAAGAAAAAGATAAAAGAAGCAAAAGAAAATGTGCATCAAAAGGAGGATCAAGTACTTGAAGTTCAGAAGGCTCTCTTTAGAACATTTTCAG
CATTCAAGGGTAATTTAGAAAATGAAGATGACCTTGAAGATCTAATTGAAAGTCAGTTCAAGGTGTTGCAAAAGGCATTCAGAATACCTCTTAATTCTGGTGAAATTGGACGGATTAAAGTTTCCAAGAAGTTATTACAACTTTTCAGGATGGGCAAACTTGGTAATTATATATTAGATTCACTTCCAAAAGGATGATTT
CCTTGATTGAGATATACTCTGGGATCTTATCATATGCTTCGTGGTATGCTGTGAAGAGATTCATGACTCATTTTAAGGCATTGCAACAATCTATAAGTTGCTTGCATCTGTGGACTTTTTACGTCACTTTTTCTCTAGTTTTGGGATGGTTTCTGAATATTGCAAAAGGATTCTTCTATTAATGCAGTGATGAATACCCT
TGCGGACCAAGTTCTTGATGAGAGATATAAACTACTTTTATACTAGTGCTTCACGATCAATTTCTGAAAAAAGGAGTTCTTTTATACACCAGGCAATGTCATTAAGACTGAGTCTTCATGAAGTATAAATGGCGCTGCCATGATAAAATGATTTTCCAAGGAAAAATTGTGACTAATCCATCTAGCTATTTGTAGAGGTG
ATGGTGGTCACTGGTCACATATCAAGTGAAAATATATTTTTTAAGAATCTGCATGGTAGGGTTTTGTCAACTTTTAAAGAATGTTGAGTTCACATATCTTAGATATAGACTGGTTAACTTGGAATCTATTAATTCATCTAAGATAGCGAGGTTAACATGTTTTAATTTTGTTTTCAACTCCCAGCTTAGATGCAAGGGAA
ATCACATTTTTGAAAGAACTTGTTCAACACAGAACATGGCCATGAGAAAGAGTCATCAGTAGTCGCTCTATGTAAGTTTCATAAGCATGAATATATTTTTATTGACTCCATTTTTAGATTTCAGGCTCTGGTCACTTAGTGGACACAGCAAGACTAATTTAATTATGAATAATTACTTCATTACTGCTGCCCCAGCAGGT
GACCTTGAAGTAGGGTTCTTCAATTTGCTCCCAAAATTTTAGCGTTCTATTCTTTTTTGCCAG
>TRINITY_DN42255_c0_g2_i1 from sample A6 / Example unspliced isoform:CGTGCCTTTGCGCTGGAAAGGCTTGAATACTGAGAGCTGCGAAGAATCTTCGAATTTCTGTCCAGAGGATCTTACAGTGAAGGGACCAAAAGACACTCCAAATGAGAAAAAGAAAAAGATAAAAGAAGCAAAAGAAAATGTGCATCAAAAGGAGGATCAAGTACTTGAAGTTCAGAAGGCTCTCTTTAGAACATTTTCAG
CATTCAAGGGTAATTTAGAAAATGAAGATGACCTTGAAGATCTAATTGAAAGTCAGTTCAAGGTGTTGCAAAAGGCATTCAGAATACCTCTTAATTCTGGTGAAATTGGACGGATTAAAGTTTCCAAGAAGTTATTACAACTTTTCAGGATGGGCAAACTTGGTAATTATATATTAGATTCACTTCCAAAAGgtacatca
tcaacataagccagccttcaagatggtcattatcatcattcactacattgctatcaggaacacaatgtaatttactttgtacatgtccatgtttctccagGATGATTTCCTTGATTGAGATATACTCTGGGATCTTATCATATGCTTCGTGGTATGCTGTGAAGAGATTCATGACTCATTTTAAGGCATTGCAACAATCT
ATAAGTTGCTTGCATCTGTGAGTATATCTGCTAATGCTTGTATCCATCTTTTTGGAGCACCTTATATTTTGCTAAATAATTACTCAAAAAGTAATATTCTTACAGGTGGACTTTTTACGTCACTTTTTCTCTAGTTTTGGGATGGTTTCTGAATATTGCAAAAGGATTCTTCTATTAATGCAGTGATGAATACCCTTGCG
GACCAAGTTCTTGATGAGAGATATAAACTACTTTTATACTAGTGCTTCACGATCAATTTCTGAAAAAAGGAGTTCTTTTATACACCAGGCAATGTCATTAAGACTGAGTCTTCATGAAGTATAAATGGCGCTGCCATGATAAAATGATTTTCCAAGGAAAAATTGTGACTAATCCATCTAGCTATTTGTAGAGGTGATGG
TGGTCACTGGTCACATATCAAGTGAAAATATATTTTTTAAGAATCTGCATGGTAGGGTTTTGTCAACTTTTAAAGAATGTTGAGTTCACATATCTTAGATATAGACTGGTTAACTTGGAATCTATTAATTCATCTAAGATAGCGAGGTTAACATGTTTTAATTTTGTTTTCAACTCCCAGCTTAGATGCAAGGGAAATCA
CATTTTTGAAAGAACTTGTTCAACACAGAACATGGCCATGAGAAAGAGTCATCAGTAGTCGCTCTATGTAAGTTTCATAAGCATGAATATATTTTTATTGACTCCATTTTTAGATTTCAGGCTCTGGTCACTTAGTGGACACAGCAAGACTAATTTAATTATGAATAATTACTTCATTACTGCTGCCCCAGCAGGTGACC
TTGAAGTAGGGTTCTTCAATTTGCTCCCAAAATTTTAGCGTTCTATTCTTTTTTGCCAG
Intron 2 GTGAGTATAT ... ATTCTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | 100 | 0 | 3 | 1 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | 0 | 1 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 41.67 | 14 | 10 | 9 |
| A7 | 25 | 6 | 2 | 1.3 |
| A8 | 33.33 | 8 | 4 | 4 |
| A9 | 38.95 | 12 | 7.7 | 3.3 |
| A10 | 22.22 | 7 | 2 | 2.7 |
>TRINITY_DN42255_c0_g2_i2 from sample A6 / Example spliced isoformCGTGCCTTTGCGCTGGAAAGGCTTGAATACTGAGAGCTGCGAAGAATCTTCGAATTTCTGTCCAGAGGATCTTACAGTGAAGGGACCAAAAGACACTCCAAATGAGAAAAAGAAAAAGATAAAAGAAGCAAAAGAAAATGTGCATCAAAAGGAGGATCAAGTACTTGAAGTTCAGAAGGCTCTCTTTAGAACATTTTCAG
CATTCAAGGGTAATTTAGAAAATGAAGATGACCTTGAAGATCTAATTGAAAGTCAGTTCAAGGTGTTGCAAAAGGCATTCAGAATACCTCTTAATTCTGGTGAAATTGGACGGATTAAAGTTTCCAAGAAGTTATTACAACTTTTCAGGATGGGCAAACTTGGTAATTATATATTAGATTCACTTCCAAAAGGATGATTT
CCTTGATTGAGATATACTCTGGGATCTTATCATATGCTTCGTGGTATGCTGTGAAGAGATTCATGACTCATTTTAAGGCATTGCAACAATCTATAAGTTGCTTGCATCTGTGGACTTTTTACGTCACTTTTTCTCTAGTTTTGGGATGGTTTCTGAATATTGCAAAAGGATTCTTCTATTAATGCAGTGATGAATACCCT
TGCGGACCAAGTTCTTGATGAGAGATATAAACTACTTTTATACTAGTGCTTCACGATCAATTTCTGAAAAAAGGAGTTCTTTTATACACCAGGCAATGTCATTAAGACTGAGTCTTCATGAAGTATAAATGGCGCTGCCATGATAAAATGATTTTCCAAGGAAAAATTGTGACTAATCCATCTAGCTATTTGTAGAGGTG
ATGGTGGTCACTGGTCACATATCAAGTGAAAATATATTTTTTAAGAATCTGCATGGTAGGGTTTTGTCAACTTTTAAAGAATGTTGAGTTCACATATCTTAGATATAGACTGGTTAACTTGGAATCTATTAATTCATCTAAGATAGCGAGGTTAACATGTTTTAATTTTGTTTTCAACTCCCAGCTTAGATGCAAGGGAA
ATCACATTTTTGAAAGAACTTGTTCAACACAGAACATGGCCATGAGAAAGAGTCATCAGTAGTCGCTCTATGTAAGTTTCATAAGCATGAATATATTTTTATTGACTCCATTTTTAGATTTCAGGCTCTGGTCACTTAGTGGACACAGCAAGACTAATTTAATTATGAATAATTACTTCATTACTGCTGCCCCAGCAGGT
GACCTTGAAGTAGGGTTCTTCAATTTGCTCCCAAAATTTTAGCGTTCTATTCTTTTTTGCCAG
>TRINITY_DN42255_c0_g2_i1 from sample A6 / Example unspliced isoform:CGTGCCTTTGCGCTGGAAAGGCTTGAATACTGAGAGCTGCGAAGAATCTTCGAATTTCTGTCCAGAGGATCTTACAGTGAAGGGACCAAAAGACACTCCAAATGAGAAAAAGAAAAAGATAAAAGAAGCAAAAGAAAATGTGCATCAAAAGGAGGATCAAGTACTTGAAGTTCAGAAGGCTCTCTTTAGAACATTTTCAG
CATTCAAGGGTAATTTAGAAAATGAAGATGACCTTGAAGATCTAATTGAAAGTCAGTTCAAGGTGTTGCAAAAGGCATTCAGAATACCTCTTAATTCTGGTGAAATTGGACGGATTAAAGTTTCCAAGAAGTTATTACAACTTTTCAGGATGGGCAAACTTGGTAATTATATATTAGATTCACTTCCAAAAGGTACATCA
TCAACATAAGCCAGCCTTCAAGATGGTCATTATCATCATTCACTACATTGCTATCAGGAACACAATGTAATTTACTTTGTACATGTCCATGTTTCTCCAGGATGATTTCCTTGATTGAGATATACTCTGGGATCTTATCATATGCTTCGTGGTATGCTGTGAAGAGATTCATGACTCATTTTAAGGCATTGCAACAATCT
ATAAGTTGCTTGCATCTgtgagtatatctgctaatgcttgtatccatctttttggagcaccttatattttgctaaataattactcaaaaagtaatattcttacagGTGGACTTTTTACGTCACTTTTTCTCTAGTTTTGGGATGGTTTCTGAATATTGCAAAAGGATTCTTCTATTAATGCAGTGATGAATACCCTTGCG
GACCAAGTTCTTGATGAGAGATATAAACTACTTTTATACTAGTGCTTCACGATCAATTTCTGAAAAAAGGAGTTCTTTTATACACCAGGCAATGTCATTAAGACTGAGTCTTCATGAAGTATAAATGGCGCTGCCATGATAAAATGATTTTCCAAGGAAAAATTGTGACTAATCCATCTAGCTATTTGTAGAGGTGATGG
TGGTCACTGGTCACATATCAAGTGAAAATATATTTTTTAAGAATCTGCATGGTAGGGTTTTGTCAACTTTTAAAGAATGTTGAGTTCACATATCTTAGATATAGACTGGTTAACTTGGAATCTATTAATTCATCTAAGATAGCGAGGTTAACATGTTTTAATTTTGTTTTCAACTCCCAGCTTAGATGCAAGGGAAATCA
CATTTTTGAAAGAACTTGTTCAACACAGAACATGGCCATGAGAAAGAGTCATCAGTAGTCGCTCTATGTAAGTTTCATAAGCATGAATATATTTTTATTGACTCCATTTTTAGATTTCAGGCTCTGGTCACTTAGTGGACACAGCAAGACTAATTTAATTATGAATAATTACTTCATTACTGCTGCCCCAGCAGGTGACC
TTGAAGTAGGGTTCTTCAATTTGCTCCCAAAATTTTAGCGTTCTATTCTTTTTTGCCAG