sp|A9LLI8|RP6L3_ARATH ----> Protein RRP6-like 3
Intron 1 GTCAAGCTGG ... ACTTCATGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 77.93 | 32 | 30 | 113 |
| A2 | 69.01 | 44 | 36 | 98 |
| A3 | 61.96 | 35 | 46 | 57 |
| A4 | 59.6 | 40 | 31 | 59 |
| A5 | 61.54 | 10 | 14 | 16 |
| A6 | 78.88 | 49 | 20 | 183 |
| A7 | 74.69 | 121 | 78 | 357 |
| A8 | 76.95 | 127 | 62 | 424 |
| A9 | 72.68 | 112 | 91 | 298 |
| A10 | 73.13 | 79 | 81 | 215 |
>TRINITY_DN40607_c0_g1_i3 from sample A6 / Example spliced isoformCACTTTTACAAACGAAGTTAGGACGCTGCCCAGTCAAGTCAGTCATTCGAAACTGGTCGGACGGCGTTACCCAGCCCGTTTGAAAATTTGTTTGCCCTGGCCACTAATGAAACCCTCACATAGCGACCGAATCCGAGGCTAGGATTTTCCGCCATTTCTCTAAACGTTGTGCTGCAGAATCTATCCGTTGGGAAACTGAG
TGCGCGTGCGAGAGAGAGAGAGCGCGCGGATTATGTATGCTCAGATCATCATGTGGTGTTACCTCTAATTGTTATCACTTACAATGACTGTCTCCACACAAATTCAGGTATTCATAACAAGCAACAGGAGAAAATGTTCTGCAAATACAAATAAAATCAGTACAACCAGTAGAGGATTTAATAATAATTCATTTGAAAGA
AAGGGCTAAACAGCTGCATTACAGTTCCTGTCTTTTGGTCCTCCCAGGCCACAATTTCTTGACTGAATATACAGAGCAATATCAAATCCATTGGCAATTAGAATGGATGAAAGACTTGAGCAGGAGCTGCAAAGCTTCTGGAAGAATCCAGTGTCTAGGGACAGAATAGTCTTTGTGGGTTCCGACGATTCAGATGAATT
CGGTCTCTTCTGTTGGGCTATGGAGAGATCTTATATTGTTGGAATGGACAGTGAGTGGAAGCCCTCCTTTCTTTCAAATATCAGCGGCAATCCCCGAGTCTCGATTTTACAGATCGCTTGCAGGATTTATGATTTCGATGTTGACGGACACAAGTCAAATAACATTAATGTTTGCAACACTGAAACAGATGTTTATCAAA
GTGGATATGATGTTGGCAATGGGGGTAGAGATTTGTCCCAAAAAGAGGCCCAATGGAGACACAAAATGTTCGGAGGAGTTGGTGATTCGCAAGGGCATAAAGTGCAGGAACTGGTGTTTTTGTTAGACTTGCTGGCTCTCCCAGTTTCGTCATTTGGGAAGACATTAAAATCTGTGTTCGTCTCTCTGGACATACTGAAG
TTGGGTTTTAGGTTTAAACAAGATTTGATGTACTTGGCTGGATCTTTCTCCAGAGAAGAGGTTCATTCTTGCTTTGACAAGGTAGATCCTTACATAGATGTTGGAAAATTATACTTCCACTTACAAAACCAAGAAGAACCATGGTTGCTAAGCAAAGGAAGAAAAATGTTGATTCAACAAAGCAAAAGCTTGTCATCTAT
ATGTGAGGAAGTGCTTGGTGTCCGCCTTTCCAAAGTCATTAAGATGTTTAATCTCAAAATATGCGAGTACCAACTTATGTCTAGGTGTATTAAATGCAACGGAATATTCATTGAAAAATCATTGACAGCAATTGAAGCTGTAGCTGCTACAACAACAGAACAAGTGATTCCAGAGTTTCTATTAGATCGTGATTTAGAAT
TTTGGCAGTGCTCACATTGTCGGCAAATATATTGGGAGGGTACCCAATACCATAATGCGATTCAACAATTCTCCAGTGTTTGTAAGGTTTCTGAGTGATTTTGGAGTCAACTTTTTTTGAATGACCATACCTCGTATAAACTTTGAGGGAATCCGTTATTATGTGATGATTATGCAAATACAACTTTATTTTCTAAGAGA
TAAAATGATTGACACCAACTCACATCTTGTGGGACATTCTTCTTATAAGAAAGGACGTGCAAGAGATAAAATAATTGACACCAACTCACATCTTGTGGGACATTCTTCTTATAAGAAAGGACACGCTTCCTAATATGGAACCTTATTTTGTATTAATTAAGTGAATGGTAGTATATGGCTTATTCCCTAAATGTGTGTCT
TACGTACAAATTGTATGGGTATAATTATGAAGGTATTTAATGTGCCATGTCTTAG
>TRINITY_DN40607_c0_g1_i1 from sample A6 / Example unspliced isoform:CACTTTTACAAACGAAGTTAGGACGCTGCCCAGTCAAGTCAGTCATTCGAAACTGGTCGGACGGCGTTACCCAGCCCGTTTGAAAATTTGTTTGCCCTGGCCACTAATGAAACCCTCACATAGCGACCGAATCCGAGGCTAGGATTTTCCGCCATTTCTCTAAACGTTGTGCTGCAGAATCTATCCGTTGGGAAACTGAG
TGCGCGTGCGAGAGAGAGAGAGCGCGCGGATTATGTATGCTCAGATCATCATGTGGTGTTACCTCTAATTGTTATCACTTACAATGACTGTCTCCACACAAATTCAGGTATTCATAACAAGCAACAGGAGAAAATGTTCTGCAAATACAAATAAAATCAGTACAACCAGTAGAGGATTTAATAATAATTCATTTGAAAGA
AAGGGCTAAACAGCTGCATTACAGTTCCTGTCTTTTGGTCCTCCCAGGCCACAATTTCTTGACTGAATATACAGAGCAATATCAAATCCATTGGCAATTAGAATGGATGAAAGACTTGAGCAGGAGCTGCAAAGCTTCTGGAAGAATCCAGTGTCTAGGGACAGAATAGTCTTTGTGGGTTCCGACGATTCAGATGAATT
CGGTCTCTTCTGTTGGGCTATGGAGAGATCTTATATTGTTGGAATGGACAGTGAGTGGAAGCCCTCCTTTCTTTCAAATATCAGCGGCAATCCCCGAGTCTCGATTTTACAGATCGCTTGCAGGATTTATGATTTCGATGTTGACGGACACAAGTCAAATAACATTAATGTTTGCAACACTGAAACAGATGTTTATCAAA
GTGGATATGATGTTGGCAATGGGGGTAGAGATTTGTCCCAAAAAGAGGCCCAATGGAGACACAAAATGTTCGGAGGAGTTGGTGATTCGCAAGGGCATAAAGTGCAGGAACTGGTGTTTTTGTTAGACTTGCTGGCTCTCCCAGTTTCGTCATTTGGGAAGACATTAAAATCTGTGTTCGTCTCTCTGGACATACTGAAG
TTGGGTTTTAGGTTTAAACAAGATTTGATGTACTTGGCTGGATCTTTCTCCAGAGAAGAGGTTCATTCTTGCTTTGACAAGGTAGATCCTTACATAGATGTTGGAAAATTATACTTCCACTTACAAAACCAAGAAGAACCATGGTTGCTAAGCAAAGGAAGAAAAATGTTGATTCAACAAAGCAAAAGCTTGTCATCTAT
ATGTGAGGAAGTGCTTGGTGTCCGCCTTTCCAAAgtcaagctggaagtgaggcaactagcccgggcttctctactgcaattgttgggttgaaagaattactcatgtcacaagaatgtgatggcaatgagaacgtcttgaggtcaacgcttggaaatgctgtagacatagttaatgcgactttaaaagggcagttattaat
ggcttcaattactgtattgcgtgcaaattatgtaagaagaaagggaatttctttctgtgagccagttttaaatattgcacaaattcttggggagaggattttgttgagtgaatgtgaaactaaagcaaagtcaggtagccggaagggaaggagtcgacgatcacggacaactgagaaatgtaaaacagaacagatagaaa
gctatagtgaatggcaaggacctccaccatgggaccctttacttggtggtgacggagttcctagatttctttgtgatgttatggttgaaggtttggcaaaacagcttcgctgtgttggtattgatgccgcaactccatctgtaaagaaggctgaaccaaggcaattgatagaccaagcacaagaagagagaagaatactc
ttgacacgagacatcaaacttttgagacgtcatatgaagcccagcaatcaagcatatagggtgaagaatcttgccaagcaagaacaacttcatgagGTCATTAAGATGTTTAATCTCAAAATATGCGAGTACCAACTTATGTCTAGGTGTATTAAATGCAACGGAATATTCATTGAAAAATCATTGACAGCAATTGAAGC
TGTAGCTGCTACAACAACAGAACAAGTGATTCCAGAGTTTCTATTAGATCGTGATTTAGAATTTTGGCAGTGCTCACATTGTCGGCAAATATATTGGGAGGGTACCCAATACCATAATGCGATTCAACAATTCTCCAGTGTTTGTAAGGTTTCTGAGTGATTTTGGAGTCAACTTTTTTTGAATGACCATACCTCGTATA
AACTTTGAGGGAATCCGTTATTATGTGATGATTATGCAAATACAACTTTATTTTCTAAGAGATAAAATGATTGACACCAACTCACATCTTGTGGGACATTCTTCTTATAAGAAAGGACGTGCAAGAGATAAAATAATTGACACCAACTCACATCTTGTGGGACATTCTTCTTATAAGAAAGGACACGCTTCCTAATATGG
AACCTTATTTTGTATTAATTAAGTGAATGGTAGTATATGGCTTATTCCCTAAATGTGTGTCTTACGTACAAATTGTATGGGTATAATTATGAAGGTATTTAATGTGCCATGTCTTAG
Intron 2 GTATTCATAA ... TGCATTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.75 | 70 | 138 | 143 |
| A2 | 67.62 | 62 | 158 | 101 |
| A3 | 68.75 | 65 | 168 | 118 |
| A4 | 67.89 | 57 | 126 | 115 |
| A5 | 66.22 | 38 | 85 | 64 |
| A6 | 68.75 | 25 | 62 | 48 |
| A7 | 72.6 | 50 | 142 | 123 |
| A8 | 76.47 | 14 | 45 | 46 |
| A9 | 65.92 | 84 | 198 | 127 |
| A10 | 77.23 | 51 | 211 | 135 |
>TRINITY_DN119525_c5_g1_i2 from sample A1 / Example spliced isoformGGCCAGAGTGTTGCTTTTCATGAAGATTTGGTATATACACTCTTGTAAATAAATTTTATAGGAAGTCAATTTCCAAGTTTCCAACACTTTTACAAACGAAGTTAGGACGCTGCCCAGTCAAGTCAGTCATTCGAAACTGGTCGGACGGCGTTACCCAGCCCGTTTGAAAATTTGTTTGCCCTGGCCACTAATGAAACCCT
CACATAGCGACCGAATCCGAGGCTAGGATTTTCCGCCATTTCTCTAAACGTTGTGCTGCAGAATCTATCCGTTGGGAAACTGAGTGCGCGTGCGAGAGAGAGAGAGCGCGCGGATTATGTATGCTCAGATCATCATGTGGTGTTACCTCTAATTGTTATCACTTACAATGACTGTCTCCACACAAATTCAGTTCCTGTCT
TTTGGTCCTCCCAGGCCACAATTTCTTGACTGAATATACAGAGCAATATCAAATCCATTGGCAATTAGAATGGATGAAAGACTTGAGCAGGAGCTGCAAAGCTTCTGGAAGAATCCAGTGTCTAGGGACAGAATAGTCTTTGTGGGTTCCGACGATTCAGATGAATTCGGTCTCTTCTGTTGGGCTATGGAGAGATCTTA
TATTGTTGGAATGGACAGTGAGTGGAAGCCCTCCTTTCTTTCAAATATCAGCGGCAATCCCCGAGTCTCGATTTTACAGATCGCTTGCAGGATTTATGATTTCGATGTTGACGGACACAAGTCAAATAACATTAATGTTTGCAACACTGAAACAGATGTTTATCAAAGTGGATATGATGTTGGCAATGGGGGTAGAGATT
TGTCCCAAAAAGAGGCCCAATGGAGACACAAAATGTTCGGAGGAGTTGGTGATTCGCAAGGGCATAAAGTGCAGGAACTGGTGTTTTTGTTAGACTTGCTGGCTCTCCCAGTTTCGTCATTTGGGAAGACATTAAAATCTGTGTTCGTCTCTCTGGACATACTGAAGTTGGGTTTTAGGTTTAAACAAGATTTGATGTAC
TTGGCTGGATCTTTCTCCAGAGAAGAGGTTCATTCTTGCTTTGACAAGGTAGATCCTTACATAGATGTTGGAAAATTATACTTCCACTTACAAAACCAAGAAGAACCATGGTTGCTAAGCAAAGGAAGAAAAATGTTGATTCAACAAAGCAAAAGCTTGTCATCTATATGTGAGGAAGTGCTTGGTGTCCGCCTTTCCAA
AGATCTTCAATGTAGTGATTGGGAACAAAGGCCTCTTACAGATGATCAAATAACATATGCTGCTGCAGATGCACATTGCCTACTTGCAGTTTTTGACGTCTTTTATCAAAATTTCCTTGACTTGCATCAAGGCGGTCAAGCTGGAAGTGAGGCAACTAGCCCGGGCTTCTCTACTGCAATTGTTGGGTTGAAAGAATTAC
TCATGTCACAAGAATGTGATGGCAATGAGAACGTCTTGAGGTCAACGCTTGGAAATGCTGTAGACATAGTTAATGCGACTTTAAAAGGGCAGTTATTAATGGCTTCAATTACTGTATTGCGTGCAAATTATGTAAGAAGAAAGGGAATTTCTTTCTGTGAGCCAGTTTTAAATATTGCACAAATTCTTGGGGAGAGGATT
TTGTTGAGTGAATGTGAAACTAAAGCAAAGTCAGGTAGCCGGAAGGGAAGGAGTCGACGATCACGGACAACTGAGAAATGTAAAACAGAACAGATAGAAAGCTATAGTGAATGGCAAGGACCTCCACCATGGGACCCTTTACTTGGTGGTGATGGAGTTCCTAGATTTCTTTGTGATGTTATGGTTGAAGGTTTGGCAAA
ACAGCTTCGCTGTGTTGGTATTGATGCCGCAACTCCATCTGTAAAGAAGGCTGAACCAAGGCAATTGATAGACCAAGCACAAGAAGAGAGAAGAATACTCTTGACACGAGAAATCAAACTTTTGAGACGTCATATGAAGCCCAGCAATCAAGCATATAGGGTGAAGAATCTTGCCAAGCAAGAACAACTTCATGAGGTCA
TTAAGATGTTTAATCTCAAAATATGCGAGTACCAACTTATGTCTAGGTGTATTAAATGCAACGGAATATTCATTGAAAAATCATTGACAGCAATTGAAGCTGTAGCTGCTACAACAACAGAACAAGTGATTCCAGAGTTTCTATTAGATCGTGATTTAGAATTTTGGCAGTGCTCACATTGTCGGCAAATATATTGGGAG
GGTACCCAATACCATAATGCGATTCAACAATTCTCCAGTGTTTGTAAGGTTTCTGAGTGATTTTGGAGTCAACTTTTTTTGAATGACCATACCTCGTATAAACTTTGAGGGAATCCGTTATTATGTGATGATTATGCAAATACAACTTTATTTTCTAAGAGATAAAATGATTGACACCAACTCACATCTTGTGGGACATT
CTTCTTATAAGAAAGGACGTGCAAGAGATAAAATAATTGACACCAACTCACATCTTGTGGGACATTCTTCTTATAAGAAAGGACACGCTTCCTAATATGGAACCTTATTTTGTATTAATTAAGTGAATGGTAGTATATGGCTTATTCCCTAAATGTGTGTCTTACGTACAAATTGTATGGGTATAATTATGAAGGTATTT
AATGTGCCC
>TRINITY_DN119525_c5_g1_i10 from sample A1 / Example unspliced isoform:GGCCAGAGTGTTGCTTTTCATGAAGATTTGGTATATACACTCTTGTAAATAAATTTTATAGGAAGTCAATTTCCAAGTTTCCAACACTTTTACAAACGAAGTTAGGACGCTGCCCAGTCAAGTCAGTCATTCGAAACTGGTCGGACGGCGTTACCCAGCCCGTTTGAAAATTTGTTTGCCCTGGCCACTAATGAAACCCT
CACATAGCGACCGAATCCGAGGCTAGGATTTTCCGCCATTTCTCTAAACGTTGTGCTGCAGAATCTATCCGTTGGGAAACTGAGTGCGCGTGCGAGAGAGAGAGAGCGCGCGGATTATGTATGCTCAGATCATCATGTGGTGTTACCTCTAATTGTTATCACTTACAATGACTGTCTCCACACAAATTCAGgtattcata
acaagcaacaggagaaaatgttctgcaaatacaaataaaatcagtacaaccagtagaggatttaataataattcatttgaaagaaagggctaaacagctgcattacagTTCCTGTCTTTTGGTCCTCCCAGGCCACAATTTCTTGACTGAATATACAGAGCAATATCAAATCCATTGGCAATTAGAATGGATGAAAGACT
TGAGCAGGAGCTGCAAAGCTTCTGGAAGAATCCAGTGTCTAGGGACAGAATAGTCTTTGTGGGTTCCGACGATTCAGATGAATTCGGTCTCTTCTGTTGGGCTATGGAGAGATCTTATATTGTTGGAATGGACAGTGAGTGGAAGCCCTCCTTTCTTTCAAATATCAGCGGCAATCCCCGAGTCTCGATTTTACAGATCG
CTTGCAGGATTTATGATTTCGATGTTGACGGACACAAGTCAAATAACATTAATGTTTGCAACACTGAAACAGATGTTTATCAAAGTGGATATGATGTTGGCAATGGGGGTAGAGATTTGTCCCAAAAAGAGGCCCAATGGAGACACAAAATGTTCGGAGGAGTTGGTGATTCGCAAGGGCATAAAGTGCAGGAACTGGTG
TTTTTGTTAGACTTGCTGGCTCTCCCAGTTTCGTCATTTGGGAAGACATTAAAATCTGTGTTCGTCTCTCTGGACATACTGAAGTTGGGTTTTAGGTTTAAACAAGATTTGATGTACTTGGCTGGATCTTTCTCCAGAGAAGAGGTTCATTCTTGCTTTGACAAGGTAGATCCTTACATAGATGTTGGAAAATTATACTT
CCACTTACAAAACCAAGAAGAACCATGGTTGCTAAGCAAAGGAAGAAAAATGTTGATTCAACAAAGCAAAAGCTTGTCATCTATATGTGAGGAAGTGCTTGGTGTCCGCCTTTCCAAAGATCTTCAATGTAGTGATTGGGAACAAAGGCCTCTTACAGATGATCAAATAACATATGCTGCTGCAGATGCACATTGCCTAC
TTGCAGTTTTTGACGTCTTTTATCAAAATTTCCTTGACTTGCATCAAGGCGGTCAAGCTGGAAGTGAGGCAACTAGCCCGGGCTTCTCTACTGCAATTGTTGGGTTGAAAGAATTACTCATGTCACAAGAATGTGATGGCAATGAGAACGTCTTGAGGTCAACGCTTGGAAATGCTGTAGACATAGTTAATGCGACTTTA
AAAGGGCAGTTATTAATGGCTTCAATTACTGTATTGCGTGCAAATTATGTAAGAAGAAAGGGAATTTCTTTCTGTGAGCCAGTTTTAAATATTGCACAAATTCTTGGGGAGAGGATTTTGTTGAGTGAATGTGAAACTAAAGCAAAGTCAGGTAGCCGGAAGGGAAGGAGTCGACGATCACGGACAACTGAGAAATGTAA
AACAGAACAGATAGAAAGCTATAGTGAATGGCAAGGACCTCCACCATGGGACCCTTTACTTGGTGGTGATGGAGTTCCTAGATTTCTTTGTGATGTTATGGTTGAAGGTTTGGCAAAACAGCTTCGCTGTGTTGGTATTGATGCCGCAACTCCATCTGTAAAGAAGGCTGAACCAAGGCAATTGATAGACCAAGCACAAG
AAGAGAGAAGAATACTCTTGACACGAGAAATCAAACTTTTGAGACGTCATATGAAGCCCAGCAATCAAGCATATAGGGTGAAGAATCTTGCCAAGCAAGAACAACTTCATGAGGTCATTAAGATGTTTAATCTCAAAATATGCGAGTACCAACTTATGTCTAGGTGTATTAAATGCAACGGAATATTCATTGAAAAATCA
TTGACAGCAATTGAAGCTGTAGCTGCTACAACAACAGAACAAGTGATTCCAGAGTTTCTATTAGATCGTGATTTAGAATTTTGGCAGTGCTCACATTGTCGGCAAATATATTGGGAGGGTACCCAATACCATAATGCGATTCAACAATTCTCCAGTGTTTGTAAGGTTTCTGAGTGATTTTGGAGTCAACTTTTTTTGAA
TGACCATACCTCGTATAAACTTTGAGGGAATCCGTTATTATGTGATGATTATGCAAATACAACTTTATTTTCTAAGAGATAAAATGATTGACACCAACTCACATCTTGTGGGACATTCTTCTTATAAGAAAGGACGTGCAAGAGATAAAATAATTGACACCAACTCACATCTTGTGGGACATTCTTCTTATAAGAAAGGA
CACGCTTCCTAATATGGAACCTTATTTTGTATTAATTAAGTGAATGGTAGTATATGGCTTATTCCCTAAATGTGTGTCTTACGTACAAATTGTATGGGTATAATTATGAAGGTATTTAATGTGCCC
Intron 3 GTCCTTGTCT ... ATGTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10.16 | 106.1 | 21.6 | 11.9 |
| A2 | 7.39 | 68.4 | 19.9 | 5.4 |
| A3 | 16.27 | 77.6 | 15.9 | 15 |
| A4 | 12.6 | 77.3 | 14.6 | 11 |
| A5 | 7.88 | 35.3 | 5.4 | 3 |
| A6 | 15.06 | 153 | 30.9 | 26.4 |
| A7 | 12.37 | 326.9 | 51.7 | 45.6 |
| A8 | 16.09 | 396 | 48.6 | 75.4 |
| A9 | 12.08 | 339.3 | 46.3 | 46.1 |
| A10 | 14.16 | 254.7 | 52.7 | 41 |
>TRINITY_DN111433_c8_g1_i8 from sample A3 / Example spliced isoformAATAGATAAAGTGAATATTGTGTACATGGCCAGAGTGTTGCTTTTCAATGAAGATTTGGTATATACACTCTTGTAAATAAATTTTATAGGAAGTCAATTTCCAAGTTTCCAACACTTTTACAAACGAAGTTAGGACGCTGCCCAGTCAAGTCAGTCATTCGAAACTGGTCGGACGGCGTTACCCAGCCCGTTTGAAAATT
TGTTTGCCCTGGCCACTAATGAAACCCTCACATAGCGACCGAATCCGAGGCTAGGATTTTCCGCCATTTCTCTAAACGTTGTGCTGCAGAATCTATCCGTTGGGAAACTGAGTGCGCGTGCGAGAGAGAGAGAGCGCGCGGATTATGTATGCTCAGATCATCATGTGGTGTTACCTCTAATTGTTATCACTTACAATGAC
TGTCTCCACACAAATTCAGGTATTCATAACAAGCAACAGGAGAAAATGTTCTGCAAATACAAATAAAATCAGTACAACCAGTAGAGGATTTAATAATAATTCATTTGAAAGAAAGGGCTAAACAGCTGCATTACAGTTCCTGTCTTTTGGTCCTCCCAGGCCACAATTTCTTGACTGAATATACAGAGCAATATCAAATC
CATTGGCAATTAGAATGGATGAAAGACTTGAGCAGGAGCTGCAAAGCTTCTGGAAGAATCCAGTGTCTAGGGACAGAATAGTCTTTGTGGGTTCCGACGATTCAGATGAATTCGGTCTCTTCTGTTGGGCTATGGAGAGATCTTATATTGTTGGAATGGACAGTGAGTGGAAGCCCTCCTTTCTTTCAAATATCAGCGGC
AATCCCCGAGTCTCGATTTTACAGATCGCTTGCAGGATTTATGATTTCGATGTTGACGGACACAAGTCAAATAACATTAATGTTTGCAACACTGAAACAGATGTTTATCAAAGTGGATATGATGTTGGCAATGGGGGTAGAGATTTGTCCCAAAAAGAGGCCCAATGGAGACACAAAATGTTCGGAGGAGTTGGTGATTC
GCAAGGGCATAAAGTGCAGGAACTGGTGTTTTTGTTAGACTTGCTGGCTCTCCCAGTTTCGTCATTTGGGAAGACATTAAAATCTGTGTTCGTCTCTCTGGACATACTGAAGTTGGGTTTTAGGTTTAAACAAGATTTGATGTACTTGGCTGGATCTTTCTCCAGAGAAGAGGTTCATTCTTGCTTTGACAAGGTAGATC
CTTACATAGATGTTGGAAAATTATACTTCCACTTACAAAACCAAGAAGAACCATGGTTGCTAAGCAAAGGAAGAAAAATGTTGATTCAACAAAGCAAAAGCTTGTCATCTATATGTGAGGAAGTGCTTGGTGTCCGCCTTTCCAAAGTCAAGCTGGAAGTGAGGCAACTAGCCCGGGCTTCTCTACTGCAATTGTTGGGT
TGAAAGAATTACTCATGTCACAAGAATGTGATGGCAATGAGAACGTCTTGAGGTCAACGCTTGGAAATGCTGTAGACATAGTTAATGCGACTTTAAAAGGGCAGTTATTAATGGCTTCAATTACTGTATTGCGTGCAAATTATGTAAGAAGAAAGGGAATTTCTTTCTGTGAGCCAGTTTTAAATATTGCACAAATTCTT
GGGGAGAGGATTTTGTTGAGTGAATGTGAAACTAAAGCAAAGTCAGGTAGCCGGAAGGGAAGGAGTCGACGATCACGGACAACTGAGAAATGTAAAACAGAACAGATAGAAAGCTATAGTGAATGGCAAGGACCTCCACCATGGGACCCTTTACTTGGTGGTGACGGAGTTCCTAGATTTCTTTGTGATGTTATGGTTGA
AGGTTTGGCAAAACAGCTTCGCTGTGTTGGTATTGATGCCGCAACTCCATCTGTAAAGAAGGCTGAACCAAGGCAATTGATAGACCAAGCACAAGAAGAGAGAAGAATACTCTTGACACGAGACATCAAACTTTTGAGACGTCATATGAAGCCCAGCAATCAAGCATATAGGGTGAAGAATCTTGCCAAGCAAGAACAAC
TTCATGAGGTCATTAAGATGTTTAATCTCAAAATATGCGAGTACCAACTTATGTCTAGGTGTATTAAATGCAACGGAATATTCATTGAAAAATCATTGACAGCAATTGAAGCTGTAGCTGCTACAACAACAGAACAAGTGATTCCAGAGTTTCTATTAGATCGTGATTTAGAATTTTGGCAGTGCTCACATTGTCGGCAA
ATATATTGGGAGGGTACCCAATACCATAATGCGATTCAACAATTCTCCAGTGTTTGTAAGGTTTCTGAGTGATTTTGGAGTCAACTTTTTTTGAATGACCATACCTCGTATAAACTTTGAGGGAATCCGTTATTATGTGATGATTATGCAAATACAACTTTATTTTCTAAGAGATAAAATGATTGACACCAACTCACATC
TTGTGGGACATTCTTCTTATAAGAAAGGACGTGCAAGAGATAAAATAATTGACACCAACTCACATCTTGTGGGACATTCTTCTTATAAGAAAGGACACGCTTCCTAATATGGAACCTTATTTTGTATTAATTAAGTGAATGGTAGTATATGGCTTATTCCCTAA
>TRINITY_DN111433_c8_g1_i7 from sample A3 / Example unspliced isoform:AATAGATAAAGTGAATATTGTGTACATGGCCAGAGTGTTGCTTTTCAATGAAGATTTGGTATATACACTCTTGTAAATAAATTTTATAGGAAGTCAATTTCCAAGTTTCCAACACTTTTACAAACGAAGTTAGGACGCTGCCCAGTCAAGTCAGTCATTCGAAACTGGTCGGACGGCGTTACCCAGCCCGTTTGAAAATT
TGTTTGCCCTGGCCACTAATGAAACCCTCACATAGCGACCGAATCCGAGGCTAGGATTTTCCGCCATTTCTCTAAACGTTGTGCTGCAGAATCTATCCGTTGGGAAACTGAGTGCGCGTGCGAGAGAGAGAGAGCGCGCGGATTATGTATGCTCAGATCATCATGTGGTGTTACCTCTAATTGTTATCACTTACAATGAC
TGTCTCCACACAAATTCAGGTATTCATAACAAGCAACAGGAGAAAATGTTCTGCAAATACAAATAAAATCAGTACAACCAGTAGAGGATTTAATAATAATTCATTTGAAAGAAAGGGCTAAACAGCTGCATTACAGTTCCTGTCTTTTGGTCCTCCCAGGCCACAATTTCTTGACTGAATATACAGAGCAATATCAAATC
CATTGGCAATTAGAATGGATGAAAGACTTGAGCAGGAGCTGCAAAGCTTCTGGAAGAATCCAGTGTCTAGGGACAGAATAGTCTTTGTGGGTTCCGACGATTCAGATGAATTCGGTCTCTTCTGTTGGGCTATGGAGAGATCTTATATTGTTGGAATGGACAGTGAGTGGAAGCCCTCCTTTCTTTCAAATATCAGCGGC
AATCCCCGAGTCTCGATTTTACAGATCGCTTGCAGGATTTATGATTTCGATGTTGACGGACACAAGTCAAATAACATTAATGTTTGCAACACTGAAACAGATGTTTATCAAAGTGGATATGATGTTGGCAATGGGGGTAGAGATTTGTCCCAAAAAGAGGCCCAATGGAGACACAAAATGTTCGGAGGAGTTGGTGATTC
GCAAGGGCATAAAGTGCAGGAACTGGTGTTTTTGTTAGACTTGCTGGCTCTCCCAGTTTCGTCATTTGGGAAGACATTAAAATCTGTGTTCGTCTCTCTGGACATACTGAAGTTGGGTTTTAGGTTTAAACAAGATTTGATGTACTTGGCTGGATCTTTCTCCAGAGAAGAGGTTCATTCTTGCTTTGACAAGGTAGATC
CTTACATAGATGTTGGAAAATTATACTTCCACTTACAAAACCAAGAAGAACCATGGTTGCTAAGCAAAGGAAGAAAAATGTTGATTCAACAAAGCAAAAGCTTGTCATCTATATGTGAGGAAGTGCTTGGTGTCCGCCTTTCCAAAGATCTTCAATGTAGTGATTGGGAACAAAGGCCTCTTACAGATGATCAAATAACA
TATGCTGCTGCAGATGCACATTGCCTACTTGCAGTTTTTGACGTCTTTTATCAAAATTTCCTTGACTTGCATCAAGGCGGTCAAGCTGGAAGTGAGGCAACTAGCCCGGGCTTCTCTACTGCAATTGTTGGGTTGAAAGAATTACTCATGTCACAAGAATGTGATGGCAATGAGAACGTCTTGAGGTCAACGCTTGGAAA
TGCTGTAGACATAGTTAATGCGACTTTAAAAGGGCAGTTATTAATGGCTTCAATTACTGTATTGCGTGCAAATTATGTAAGAAGAAAGGGAATTTCTTTCTGTGAGCCAGTTTTAAATATTGCACAAATTCTTGGGGAGAGGATTTTGTTGAGTGAATGTGAAACTAAAGCAAAGTCAGGTAGCCGGAAGGGAAGGAGTC
GACGATCACGGACAACTGAGAAATGTAAAACAGAACAGATAGAAAGCTATAGTGAATGGCAAGGACCTCCACCATGGGACCCTTTACTTGGTGGTGACGGAGTTCCTAGATTTCTTTGTGATGTTATGGTCAGTTGTTTGTATTTTGAAAATCATAGTTCAAATTTAACTTCCAAGAATGTGACTTTAGGTCACCTGAGC
TTATAATATAAATAATAAAATTGAAAGCAACGCCATTGAAACTTTATATTTTGAAAGGAAGGGAAAATTAGTCATCAACCTTGAAACTTTAACATCATGACCTTTTCTTCTTTATACAGTTTAATTTTTTTTATTTCTTAGAACAAGCAAGAGATATTCTGGGATAGCTCATGGATATGCTGTGTAGGTTGAAGGTTTGG
CAAAACAGCTTCGCTGTGTTGGTATTGATGCCGCAACTCCATCTGTAAAGAAGGCTGAACCAAGgtccttgtctagcattacacttcataaatcaagttctaggggaaaaaagcatgtatcatttatgactaaccacttcaataatgttgttttgttatggaaagacaaatgaccattagcacagatctatattttaatc
tacaatatatacagatttctttcatgtatctagtaactcctaagctggaaaatcaaaataaggaaatgatttattgtttttcttgattctcttgtgctatgggtgtgatgttcctcaacagatatggcttaaaatttatgttttcagGCAATTGATAGACCAAGCACAAGAAGAGAGAAGAATACTCTTGACACGAGACA
TCAAACTTTTGAGACGTCATATGAAGCCCAGCAATCAAGCATATAGGGTGAAGAATCTTGCCAAGCAAGAACAACTTCATGAGGTCATTAAGATGTTTAATCTCAAAATATGCGAGTACCAACTTATGTCTAGGTGTATTAAATGCAACGGAATATTCATTGAAAAATCATTGACAGCAATTGAAGCTGTAGCTGCTACA
ACAACAGAACAAGTGATTCCAGAGTTTCTATTAGATCGTGATTTAGAATTTTGGCAGTGCTCACATTGTCGGCAAATATATTGGGAGGGTACCCAATACCATAATGCGATTCAACAATTCTCCAGTGTTTGTAAGGTTTCTGAGTGATTTTGGAGTCAACTTTTTTTGAATGACCATACCTCGTATAAACTTTGAGGGAA
TCCGTTATTATGTGATGATTATGCAAATACAACTTTATTTTCTAAGAGATAAAATGATTGACACCAACTCACATCTTGTGGGACATTCTTCTTATAAGAAAGGACGTGCAAGAGATAAAATAATTGACACCAACTCACATCTTGTGGGACATTCTTCTTATAAGAAAGGACACGCTTCCTAATATGGAACCTTATTTTGT
ATTAATTAAGTGAATGGTAGTATATGGCTTATTCCCTAA
Intron 4 GTCAGTTGTT ... TGCTGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.48 | 106 | 29 | 33.8 |
| A2 | 31.76 | 98 | 45.6 | 24 |
| A3 | 23.3 | 81 | 24.6 | 31 |
| A4 | 34.92 | 82 | 44 | 22.8 |
| A5 | 21.82 | 43 | 12 | 15.3 |
| A6 | 35.23 | 193 | 105 | 36.3 |
| A7 | 33.95 | 423 | 217.4 | 85.9 |
| A8 | 33.64 | 417 | 211.4 | 118 |
| A9 | 37.36 | 365.8 | 218.2 | 75 |
| A10 | 32.04 | 348.6 | 164.4 | 56.8 |
>TRINITY_DN119525_c5_g1_i8 from sample A1 / Example spliced isoformGGCCAGAGTGTTGCTTTTCATGAAGATTTGGTATATACACTCTTGTAAATAAATTTTATAGGAAGTCAATTTCCAAGTTTCCAACACTTTTACAAACGAAGTTAGGACGCTGCCCAGTCAAGTCAGTCATTCGAAACTGGTCGGACGGCGTTACCCAGCCCGTTTGAAAATTTGTTTGCCCTGGCCACTAATGAAACCCT
CACATAGCGACCGAATCCGAGGCTAGGATTTTCCGCCATTTCTCTAAACGTTGTGCTGCAGAATCTATCCGTTGGGAAACTGAGTGCGCGTGCGAGAGAGAGAGAGCGCGCGGATTATGTATGCTCAGATCATCATGTGGTGTTACCTCTAATTGTTATCACTTACAATGACTGTCTCCACACAAATTCAGGTATTCATA
ACAAGCAACAGGAGAAAATGTTCTGCAAATACAAATAAAATCAGTACAACCAGTAGAGGATTTAATAATAATTCATTTGAAAGAAAGGGCTAAACAGCTGCATTACAGTTCCTGTCTTTTGGTCCTCCCAGGCCACAATTTCTTGACTGAATATACAGAGCAATATCAAATCCATTGGCAATTAGAATGGATGAAAGACT
TGAGCAGGAGCTGCAAAGCTTCTGGAAGAATCCAGTGTCTAGGGACAGAATAGTCTTTGTGGGTTCCGACGATTCAGATGAATTCGGTCTCTTCTGTTGGGCTATGGAGAGATCTTATATTGTTGGAATGGACAGTGAGTGGAAGCCCTCCTTTCTTTCAAATATCAGCGGCAATCCCCGAGTCTCGATTTTACAGATCG
CTTGCAGGATTTATGATTTCGATGTTGACGGACACAAGTCAAATAACATTAATGTTTGCAACACTGAAACAGATGTTTATCAAAGTGGATATGATGTTGGCAATGGGGGTAGAGATTTGTCCCAAAAAGAGGCCCAATGGAGACACAAAATGTTCGGAGGAGTTGGTGATTCGCAAGGGCATAAAGTGCAGGAACTGGTG
TTTTTGTTAGACTTGCTGGCTCTCCCAGTTTCGTCATTTGGGAAGACATTAAAATCTGTGTTCGTCTCTCTGGACATACTGAAGTTGGGTTTTAGGTTTAAACAAGATTTGATGTACTTGGCTGGATCTTTCTCCAGAGAAGAGGTTCATTCTTGCTTTGACAAGGTAGATCCTTACATAGATGTTGGAAAATTATACTT
CCACTTACAAAACCAAGAAGAACCATGGTTGCTAAGCAAAGGAAGAAAAATGTTGATTCAACAAAGCAAAAGCTTGTCATCTATATGTGAGGAAGTGCTTGGTGTCCGCCTTTCCAAAGATCTTCAATGTAGTGATTGGGAACAAAGGCCTCTTACAGATGATCAAATAACATATGCTGCTGCAGATGCACATTGCCTAC
TTGCAGTTTTTGACGTCTTTTATCAAAATTTCCTTGACTTGCATCAAGGCGGTCAAGCTGGAAGTGAGGCAACTAGCCCGGGCTTCTCTACTGCAATTGTTGGGTTGAAAGAATTACTCATGTCACAAGAATGTGATGGCAATGAGAACGTCTTGAGGTCAACGCTTGGAAATGCTGTAGACATAGTTAATGCGACTTTA
AAAGGGCAGTTATTAATGGCTTCAATTACTGTATTGCGTGCAAATTATGTAAGAAGAAAGGGAATTTCTTTCTGTGAGCCAGTTTTAAATATTGCACAAATTCTTGGGGAGAGGATTTTGTTGAGTGAATGTGAAACTAAAGCAAAGTCAGGTAGCCGGAAGGGAAGGAGTCGACGATCACGGACAACTGAGAAATGTAA
AACAGAACAGATAGAAAGCTATAGTGAATGGCAAGGACCTCCACCATGGGACCCTTTACTTGGTGGTGATGGAGTTCCTAGATTTCTTTGTGATGTTATGGTTGAAGGTTTGGCAAAACAGCTTCGCTGTGTTGGTATTGATGCCGCAACTCCATCTGTAAAGAAGGCTGAACCAAGGCAATTGATAGACCAAGCACAAG
AAGAGAGAAGAATACTCTTGACACGAGAAATCAAACTTTTGAGACGTCATATGAAGCCCAGCAATCAAGCATATAGGGTGAAGAATCTTGCCAAGCAAGAACAACTTCATGAGGTCATTAAGATGTTTAATCTCAAAATATGCGAGTACCAACTTATGTCTAGGTGTATTAAATGCAACGGAATATTCATTGAAAAATCA
TTGACAGCAATTGAAGCTGTAGCTGCTACAACAACAGAACAAGTGATTCCAGAGTTTCTATTAGATCGTGATTTAGAATTTTGGCAGTGCTCACATTGTCGGCAAATATATTGGGAGGTATCTATTCTTCTAAACTGTTCCCTTCCCCATACTGTCATGGTTTTTTATATTTTTCAAAGCTTTTTATTGGCAGCTTGGCT
TCACATAGGTTTTCCAGATCTATTTGGCAACTTCATGGCATACAATGGTTG
>TRINITY_DN119525_c5_g1_i4 from sample A1 / Example unspliced isoform:GGCCAGAGTGTTGCTTTTCATGAAGATTTGGTATATACACTCTTGTAAATAAATTTTATAGGAAGTCAATTTCCAAGTTTCCAACACTTTTACAAACGAAGTTAGGACGCTGCCCAGTCAAGTCAGTCATTCGAAACTGGTCGGACGGCGTTACCCAGCCCGTTTGAAAATTTGTTTGCCCTGGCCACTAATGAAACCCT
CACATAGCGACCGAATCCGAGGCTAGGATTTTCCGCCATTTCTCTAAACGTTGTGCTGCAGAATCTATCCGTTGGGAAACTGAGTGCGCGTGCGAGAGAGAGAGAGCGCGCGGATTATGTATGCTCAGATCATCATGTGGTGTTACCTCTAATTGTTATCACTTACAATGACTGTCTCCACACAAATTCAGGTATTCATA
ACAAGCAACAGGAGAAAATGTTCTGCAAATACAAATAAAATCAGTACAACCAGTAGAGGATTTAATAATAATTCATTTGAAAGAAAGGGCTAAACAGCTGCATTACAGTTCCTGTCTTTTGGTCCTCCCAGGCCACAATTTCTTGACTGAATATACAGAGCAATATCAAATCCATTGGCAATTAGAATGGATGAAAGACT
TGAGCAGGAGCTGCAAAGCTTCTGGAAGAATCCAGTGTCTAGGGACAGAATAGTCTTTGTGGGTTCCGACGATTCAGATGAATTCGGTCTCTTCTGTTGGGCTATGGAGAGATCTTATATTGTTGGAATGGACAGTGAGTGGAAGCCCTCCTTTCTTTCAAATATCAGCGGCAATCCCCGAGTCTCGATTTTACAGATCG
CTTGCAGGATTTATGATTTCGATGTTGACGGACACAAGTCAAATAACATTAATGTTTGCAACACTGAAACAGATGTTTATCAAAGTGGATATGATGTTGGCAATGGGGGTAGAGATTTGTCCCAAAAAGAGGCCCAATGGAGACACAAAATGTTCGGAGGAGTTGGTGATTCGCAAGGGCATAAAGTGCAGGAACTGGTG
TTTTTGTTAGACTTGCTGGCTCTCCCAGTTTCGTCATTTGGGAAGACATTAAAATCTGTGTTCGTCTCTCTGGACATACTGAAGTTGGGTTTTAGGTTTAAACAAGATTTGATGTACTTGGCTGGATCTTTCTCCAGAGAAGAGGTTCATTCTTGCTTTGACAAGGTAGATCCTTACATAGATGTTGGAAAATTATACTT
CCACTTACAAAACCAAGAAGAACCATGGTTGCTAAGCAAAGGAAGAAAAATGTTGATTCAACAAAGCAAAAGCTTGTCATCTATATGTGAGGAAGTGCTTGGTGTCCGCCTTTCCAAAGATCTTCAATGTAGTGATTGGGAACAAAGGCCTCTTACAGATGATCAAATAACATATGCTGCTGCAGATGCACATTGCCTAC
TTGCAGTTTTTGACGTCTTTTATCAAAATTTCCTTGACTTGCATCAAGGCGGTCAAGCTGGAAGTGAGGCAACTAGCCCGGGCTTCTCTACTGCAATTGTTGGGTTGAAAGAATTACTCATGTCACAAGAATGTGATGGCAATGAGAACGTCTTGAGGTCAACGCTTGGAAATGCTGTAGACATAGTTAATGCGACTTTA
AAAGGGCAGTTATTAATGGCTTCAATTACTGTATTGCGTGCAAATTATGTAAGAAGAAAGGGAATTTCTTTCTGTGAGCCAGTTTTAAATATTGCACAAATTCTTGGGGAGAGGATTTTGTTGAGTGAATGTGAAACTAAAGCAAAGTCAGGTAGCCGGAAGGGAAGGAGTCGACGATCACGGACAACTGAGAAATGTAA
AACAGAACAGATAGAAAGCTATAGTGAATGGCAAGGACCTCCACCATGGGACCCTTTACTTGGTGGTGATGGAGTTCCTAGATTTCTTTGTGATGTTATGgtcagttgtttgtattttgaaaatcatagttcaaatttaacttccaagaatgtgactttaggtcacctgagcttataatataaataataaaattgaaagc
aacgccattgaaactttatattttgaaaggaagggaaaattagtcatcaaccttgaaactttaacatcatgaccttttcttctttatacagtttaattttttttatttcttagaacaagcaagagatattctgggatagctcatggatatgctgtgtagGTTGAAGGTTTGGCAAAACAGCTTCGCTGTGTTGGTATTGA
TGCCGCAACTCCATCTGTAAAGAAGGCTGAACCAAGGTCCTTGTCTAGCATTACACTTCATAAATCAAGTTCTAGGGGAAAAAAGCATGTATCATTTATGACTAACCACTTCAATAATGTTGTTTTGTTATGGAAAGACAAATGACCATTAGCACAGATCTATATTTTAATCTACAATATATACAGATTTCTTTCATGTA
TCTAGTAACTCCTAAGCTGGAAAATCAAAATAAGGAAATGATTTATTGTTTTTCTTGATTCTCTTGTGCTATGGGTGTGATGTTCCTC
Intron 5 GTCAAGCTGG ... CTGAACCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 82.14 | 25 | 30 | 115 |
| A2 | 72.28 | 28 | 36 | 73 |
| A3 | 65.32 | 43 | 46 | 81 |
| A4 | 70.94 | 34 | 31 | 83 |
| A5 | 84.09 | 7 | 14 | 37 |
| A6 | 84.92 | 30 | 20 | 169 |
| A7 | 79.01 | 93 | 78 | 350 |
| A8 | 80.97 | 98 | 62 | 417 |
| A9 | 80.67 | 86 | 91 | 359 |
| A10 | 76.58 | 85 | 81 | 278 |
>TRINITY_DN111810_c1_g3_i3 from sample A2 / Example spliced isoformGTAGGGTAATAGATAAAGTGAATATTGTGTACATGGCCAGAGTGTTGCTTTTCAATGAAGATTTGGTATATACACTCTTGTAAATAAATTTTATAGGAAGTCAATTTCCAAGTTTCCAACACTTTTACAAACGAAGTTAGGACGCTGCCCAGTCAAGTCAGTCATTCGAAACTGGTCGGACGGCGTTACCCAGCCCGTTT
GAAAATTTGTTTGCCCTGGCCACTAATGAAACCCTCACATAGCGACCGAATCCGAGGCTAGGATTTTCCGCCATTTCTCTAAACGTTGTGCTGCAGAATCTATCCGTTGGGAAACTGAGTGCGCGTGCGAGAGAGAGAGAGCGCGCGGATTATGTATGCTCAGATCATCATGTGGTGTTACCTCTAATTGTTATCACTTA
CAATGACTGTCTCCACACAAATTCAGGTATTCATAACAAGCAACAGGAGAAAATGTTCTGCAAATACAAATAAAATCAGTACAACCAGTAGAGGATTTAATAATAATTCATTTGAAAGAAAGGGCTAAACAGCTGCATTACAGTTCCTGTCTTTTGGTCCTCCCAGGCCACAATTTCTTGACTGAATATACAGAGCAATA
TCAAATCCATTGGCAATTAGAATGGATGAAAGACTTGAGCAGGAGCTGCAAAGCTTCTGGAAGAATCCAGTGTCTAGGGACAGAATAGTCTTTGTGGGTTCCGACGATTCAGATGAATTCGGTCTCTTCTGTTGGGCTATGGAGAGATCTTATATTGTTGGAATGGACAGTGAGTGGAAGCCCTCCTTTCTTTCAAATAT
CAGCGGCAATCCCCGAGTCTCGATTTTACAGATCGCTTGCAGGATTTACGATTTCGATGTTGACGGACACAAGTCAAATAACATTAATGTTTGCAACACTGAAACAGATGTTTATCAAAGTGGATATGATGTTGGCAATGGGGGTAGAGATTTGTCCCAAAAAGAGGCCCAATGGAGACACAAAATGTTCGGAGGAGTTG
GTGATTCGCAAGGGCATAAAGTGCAGGAACTGGTGTTTTTGTTAGACTTGCTGGCTCTCCCAGTTTCGTCATTTGGGAAGACATTAAAATCTGTGTTCGTCTCTCTGGACATACTGAAGTTGGGTTTTAGGTTTAAACAAGATTTGATGTACTTGGCTGGATCTTTCTCCAGAGAAGAGGTTCATTCTTGCTTTGACAAG
GTAGATCCTTACATAGATGTTGGAAAATTATACTTCCACTTACAAAACCAAGAAGAACCATGGTTGCTAAGCAAAGGAAGAAAAATGTTGATTCAACAAAGCAAAAGCTTGTCATCTATATGTGAGGAAGTGCTTGGTGTCCGCCTTTCCAAAGCAATTGATAGACCAAGCACAAGAAGAGAGAAGAATACTCTTGACAC
GAGAAATCAAACTTTTGAGACGTCATATGAAGCCCAGCAATCAAGCATATAGGGTGAAGAATCTTGCCAAGCAAGAACAACTTCATGAGGTCATTAAGATGTTTAATCTCAAAATATGCGAGTACCAACTTATGTCTAGGTGTATTAAATGCAACGGAATATTCATTGAAAAATCATTGACAGCAATTGAAGCTGTAGCT
GCTACAACAACAGAACAAGTGATTCCAGAGTTTCTATTAGATCGTGATTTAGAATTTTGGCAGTGCTCACATTGTCGGCAAATATATTGGGAGGGTACCCAATACCATAATGCGATTCAACAATTCTCCAGTGTTTGTAAGGTTTCTGAGTGATTTTGGAGTCAACTTTTTTTGAATGACCATACCTCGTATAAACTTTG
AGGGAATCCGTTATTATGTGATGATTATGCAAATACAACTTTATTTTCTAAGAGATAAAATGATTGACACCAACTCACATCTTGTGGGACATTCTTCTTATAAGAAAGGACGTGCAAGAGATAAAATAATTGACACCAACTCACATCTTGTGGGACATTCTTCTTATAAGAAAGGACACGCTTCCTAATATGGAACCTTA
TTTTGTATTAATTAAGTGAATGGTAGTATATGGCTTATTCCCTAAATGTGTGTCTTAC
>TRINITY_DN111810_c1_g3_i5 from sample A2 / Example unspliced isoform:GTAGGGTAATAGATAAAGTGAATATTGTGTACATGGCCAGAGTGTTGCTTTTCAATGAAGATTTGGTATATACACTCTTGTAAATAAATTTTATAGGAAGTCAATTTCCAAGTTTCCAACACTTTTACAAACGAAGTTAGGACGCTGCCCAGTCAAGTCAGTCATTCGAAACTGGTCGGACGGCGTTACCCAGCCCGTTT
GAAAATTTGTTTGCCCTGGCCACTAATGAAACCCTCACATAGCGACCGAATCCGAGGCTAGGATTTTCCGCCATTTCTCTAAACGTTGTGCTGCAGAATCTATCCGTTGGGAAACTGAGTGCGCGTGCGAGAGAGAGAGAGCGCGCGGATTATGTATGCTCAGATCATCATGTGGTGTTACCTCTAATTGTTATCACTTA
CAATGACTGTCTCCACACAAATTCAGGTATTCATAACAAGCAACAGGAGAAAATGTTCTGCAAATACAAATAAAATCAGTACAACCAGTAGAGGATTTAATAATAATTCATTTGAAAGAAAGGGCTAAACAGCTGCATTACAGTTCCTGTCTTTTGGTCCTCCCAGGCCACAATTTCTTGACTGAATATACAGAGCAATA
TCAAATCCATTGGCAATTAGAATGGATGAAAGACTTGAGCAGGAGCTGCAAAGCTTCTGGAAGAATCCAGTGTCTAGGGACAGAATAGTCTTTGTGGGTTCCGACGATTCAGATGAATTCGGTCTCTTCTGTTGGGCTATGGAGAGATCTTATATTGTTGGAATGGACAGTGAGTGGAAGCCCTCCTTTCTTTCAAATAT
CAGCGGCAATCCCCGAGTCTCGATTTTACAGATCGCTTGCAGGATTTACGATTTCGATGTTGACGGACACAAGTCAAATAACATTAATGTTTGCAACACTGAAACAGATGTTTATCAAAGTGGATATGATGTTGGCAATGGGGGTAGAGATTTGTCCCAAAAAGAGGCCCAATGGAGACACAAAATGTTCGGAGGAGTTG
GTGATTCGCAAGGGCATAAAGTGCAGGAACTGGTGTTTTTGTTAGACTTGCTGGCTCTCCCAGTTTCGTCATTTGGGAAGACATTAAAATCTGTGTTCGTCTCTCTGGACATACTGAAGTTGGGTTTTAGGTTTAAACAAGATTTGATGTACTTGGCTGGATCTTTCTCCAGAGAAGAGGTTCATTCTTGCTTTGACAAG
GTAGATCCTTACATAGATGTTGGAAAATTATACTTCCACTTACAAAACCAAGAAGAACCATGGTTGCTAAGCAAAGGAAGAAAAATGTTGATTCAACAAAGCAAAAGCTTGTCATCTATATGTGAGGAAGTGCTTGGTGTCCGCCTTTCCAAAgtcaagctggaagtgaggcaactagcccgggcttctctactgcaatt
gttgggttgaaagaattactcatgtcacaagaatgtgatggcaatgagaacgtcttgaggtcaacgcttggaaatgctgtagacatagttaatgcgactttaaaagggcagttattaatggcttcaattactgtattgcgtgcaaattatgtaagaagaaagggaatttctttctgtgagccagttttaaatattgcaca
aattcttggggagaggattttgttgagtgaatgtgaaactaaagcaaagtcaggtagccggaagggaaggagtcgacgatcacggacaactgagaaatgtaaaacagaacagatagaaagctatagtgaatggcaaggacctccaccatgggaccctttacttggtggtgatggagttcctagatttctttgtgatgtta
tggttgaaggtttggcaaaacagcttcgctgtgttggtattgatgccgcaactccatctgtaaagaaggctgaaccaagGCAATTGATAGACCAAGCACAAGAAGAGAGAAGAATACTCTTGACACGAGAAATCAAACTTTTGAGACGTCATATGAAGCCCAGCAATCAAGCATATAGGGTGAAGAATCTTGCCAAGCAA
GAACAACTTCATGAGGTCATTAAGATGTTTAATCTCAAAATATGCGAGTACCAACTTATGTCTAGGTGTATTAAATGCAACGGAATATTCATTGAAAAATCATTGACAGCAATTGAAGCTGTAGCTGCTACAACAACAGAACAAGTGATTCCAGAGTTTCTATTAGATCGTGATTTAGAATTTTGGCAGTGCTCACATTG
TCGGCAAATATATTGGGAGGGTACCCAATACCATAATGCGATTCAACAATTCTCCAGTGTTTGTAAGGTTTCTGAGTGATTTTGGAGTCAACTTTTTTTGAATGACCATACCTCGTATAAACTTTGAGGGAATCCGTTATTATGTGATGATTATGCAAATACAACTTTATTTTCTAAGAGATAAAATGATTGACACCAAC
TCACATCTTGTGGGACATTCTTCTTATAAGAAAGGACGTGCAAGAGATAAAATAATTGACACCAACTCACATCTTGTGGGACATTCTTCTTATAAGAAAGGACACGCTTCCTAATATGGAACCTTATTTTGTATTAATTAAGTGAATGGTAGTATATGGCTTATTCCCTAAATGTGTGTCTTAC
Intron 6 GTCATTAAGA ... TCATTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75.68 | 36 | 113 | 111 |
| A2 | 76.43 | 31 | 98 | 103 |
| A3 | 69.59 | 26 | 57 | 62 |
| A4 | 81.22 | 17 | 59 | 88 |
| A5 | 63.64 | 12 | 16 | 26 |
| A6 | 71.16 | 77 | 183 | 197 |
| A7 | 72.37 | 130 | 357 | 324 |
| A8 | 71.78 | 167 | 424.3 | 425 |
| A9 | 73.82 | 101 | 298.7 | 271 |
| A10 | 72.38 | 79 | 215 | 199 |
>TRINITY_DN111433_c8_g1_i4 from sample A3 / Example spliced isoformAATAGATAAAGTGAATATTGTGTACATGGCCAGAGTGTTGCTTTTCAATGAAGATTTGGTATATACACTCTTGTAAATAAATTTTATAGGAAGTCAATTTCCAAGTTTCCAACACTTTTACAAACGAAGTTAGGACGCTGCCCAGTCAAGTCAGTCATTCGAAACTGGTCGGACGGCGTTACCCAGCCCGTTTGAAAATT
TGTTTGCCCTGGCCACTAATGAAACCCTCACATAGCGACCGAATCCGAGGCTAGGATTTTCCGCCATTTCTCTAAACGTTGTGCTGCAGAATCTATCCGTTGGGAAACTGAGTGCGCGTGCGAGAGAGAGAGAGCGCGCGGATTATGTATGCTCAGATCATCATGTGGTGTTACCTCTAATTGTTATCACTTACAATGAC
TGTCTCCACACAAATTCAGGTATTCATAACAAGCAACAGGAGAAAATGTTCTGCAAATACAAATAAAATCAGTACAACCAGTAGAGGATTTAATAATAATTCATTTGAAAGAAAGGGCTAAACAGCTGCATTACAGTTCCTGTCTTTTGGTCCTCCCAGGCCACAATTTCTTGACTGAATATACAGAGCAATATCAAATC
CATTGGCAATTAGAATGGATGAAAGACTTGAGCAGGAGCTGCAAAGCTTCTGGAAGAATCCAGTGTCTAGGGACAGAATAGTCTTTGTGGGTTCCGACGATTCAGATGAATTCGGTCTCTTCTGTTGGGCTATGGAGAGATCTTATATTGTTGGAATGGACAGTGAGTGGAAGCCCTCCTTTCTTTCAAATATCAGCGGC
AATCCCCGAGTCTCGATTTTACAGATCGCTTGCAGGATTTATGATTTCGATGTTGACGGACACAAGTCAAATAACATTAATGTTTGCAACACTGAAACAGATGTTTATCAAAGTGGATATGATGTTGGCAATGGGGGTAGAGATTTGTCCCAAAAAGAGGCCCAATGGAGACACAAAATGTTCGGAGGAGTTGGTGATTC
GCAAGGGCATAAAGTGCAGGAACTGGTGTTTTTGTTAGACTTGCTGGCTCTCCCAGTTTCGTCATTTGGGAAGACATTAAAATCTGTGTTCGTCTCTCTGGACATACTGAAGTTGGGTTTTAGGTTTAAACAAGATTTGATGTACTTGGCTGGATCTTTCTCCAGAGAAGAGGTTCATTCTTGCTTTGACAAGGTAGATC
CTTACATAGATGTTGGAAAATTATACTTCCACTTACAAAACCAAGAAGAACCATGGTTGCTAAGCAAAGGAAGAAAAATGTTGATTCAACAAAGCAAAAGCTTGTCATCTATATGTGAGGAAGTGCTTGGTGTCCGCCTTTCCAAAGATCTTCAATGTAGTGATTGGGAACAAAGGCCTCTTACAGATGATCAAATAACA
TATGCTGCTGCAGATGCACATTGCCTACTTGCAGTTTTTGACGTCTTTTATCAAAATTTCCTTGACTTGCATCAAGGCGGTCAAGCTGGAAGTGAGGCAACTAGCCCGGGCTTCTCTACTGCAATTGTTGGGTTGAAAGAATTACTCATGTCACAAGAATGTGATGGCAATGAGAACGTCTTGAGGTCAACGCTTGGAAA
TGCTGTAGACATAGTTAATGCGACTTTAAAAGGGCAGTTATTAATGGCTTCAATTACTGTATTGCGTGCAAATTATGTAAGAAGAAAGGGAATTTCTTTCTGTGAGCCAGTTTTAAATATTGCACAAATTCTTGGGGAGAGGATTTTGTTGAGTGAATGTGAAACTAAAGCAAAGTCAGGTAGCCGGAAGGGAAGGAGTC
GACGATCACGGACAACTGAGAAATGTAAAACAGAACAGATAGAAAGCTATAGTGAATGGCAAGGACCTCCACCATGGGACCCTTTACTTGGTGGTGACGGAGTTCCTAGATTTCTTTGTGATGTTATGGTTGAAGGTTTGGCAAAACAGCTTCGCTGTGTTGGTATTGATGCCGCAACTCCATCTGTAAAGAAGGCTGAA
CCAAGGCAATTGATAGACCAAGCACAAGAAGAGAGAAGAATACTCTTGACACGAGACATCAAACTTTTGAGACGTCATATGAAGCCCAGCAATCAAGCATATAGGGTGAAGAATCTTGCCAAGCAAGAACAACTTCATGAGCAATTGAAGCTGTAGCTGCTACAACAACAGAACAAGTGATTCCAGAGTTTCTATTAGAT
CGTGATTTAGAATTTTGGCAGTGCTCACATTGTCGGCAAATATATTGGGAGGGTACCCAATACCATAATGCGATTCAACAATTCTCCAGTGTTTGTAAGGTTTCTGAGTGATTTTGGAGTCAACTTTTTTTGAATGACCATACCTCGTATAAACTTTGAGGGAATCCGTTATTATGTGATGATTATGCAAATACAACTTT
ATTTTCTAAGAGATAAAATGATTGACACCAACTCACATCTTGTGGGACATTCTTCTTATAAGAAAGGACGTGCAAGAGATAAAATAATTGACACCAACTCACATCTTGTGGGACATTCTTCTTATAAGAAAGGACACGCTTCCTAATATGGAACCTTATTTTGTATTAATTAAGTGAATGGTAGTATATGGCTTATTCCC
TAA
>TRINITY_DN111433_c8_g1_i8 from sample A3 / Example unspliced isoform:AATAGATAAAGTGAATATTGTGTACATGGCCAGAGTGTTGCTTTTCAATGAAGATTTGGTATATACACTCTTGTAAATAAATTTTATAGGAAGTCAATTTCCAAGTTTCCAACACTTTTACAAACGAAGTTAGGACGCTGCCCAGTCAAGTCAGTCATTCGAAACTGGTCGGACGGCGTTACCCAGCCCGTTTGAAAATT
TGTTTGCCCTGGCCACTAATGAAACCCTCACATAGCGACCGAATCCGAGGCTAGGATTTTCCGCCATTTCTCTAAACGTTGTGCTGCAGAATCTATCCGTTGGGAAACTGAGTGCGCGTGCGAGAGAGAGAGAGCGCGCGGATTATGTATGCTCAGATCATCATGTGGTGTTACCTCTAATTGTTATCACTTACAATGAC
TGTCTCCACACAAATTCAGGTATTCATAACAAGCAACAGGAGAAAATGTTCTGCAAATACAAATAAAATCAGTACAACCAGTAGAGGATTTAATAATAATTCATTTGAAAGAAAGGGCTAAACAGCTGCATTACAGTTCCTGTCTTTTGGTCCTCCCAGGCCACAATTTCTTGACTGAATATACAGAGCAATATCAAATC
CATTGGCAATTAGAATGGATGAAAGACTTGAGCAGGAGCTGCAAAGCTTCTGGAAGAATCCAGTGTCTAGGGACAGAATAGTCTTTGTGGGTTCCGACGATTCAGATGAATTCGGTCTCTTCTGTTGGGCTATGGAGAGATCTTATATTGTTGGAATGGACAGTGAGTGGAAGCCCTCCTTTCTTTCAAATATCAGCGGC
AATCCCCGAGTCTCGATTTTACAGATCGCTTGCAGGATTTATGATTTCGATGTTGACGGACACAAGTCAAATAACATTAATGTTTGCAACACTGAAACAGATGTTTATCAAAGTGGATATGATGTTGGCAATGGGGGTAGAGATTTGTCCCAAAAAGAGGCCCAATGGAGACACAAAATGTTCGGAGGAGTTGGTGATTC
GCAAGGGCATAAAGTGCAGGAACTGGTGTTTTTGTTAGACTTGCTGGCTCTCCCAGTTTCGTCATTTGGGAAGACATTAAAATCTGTGTTCGTCTCTCTGGACATACTGAAGTTGGGTTTTAGGTTTAAACAAGATTTGATGTACTTGGCTGGATCTTTCTCCAGAGAAGAGGTTCATTCTTGCTTTGACAAGGTAGATC
CTTACATAGATGTTGGAAAATTATACTTCCACTTACAAAACCAAGAAGAACCATGGTTGCTAAGCAAAGGAAGAAAAATGTTGATTCAACAAAGCAAAAGCTTGTCATCTATATGTGAGGAAGTGCTTGGTGTCCGCCTTTCCAAAGTCAAGCTGGAAGTGAGGCAACTAGCCCGGGCTTCTCTACTGCAATTGTTGGGT
TGAAAGAATTACTCATGTCACAAGAATGTGATGGCAATGAGAACGTCTTGAGGTCAACGCTTGGAAATGCTGTAGACATAGTTAATGCGACTTTAAAAGGGCAGTTATTAATGGCTTCAATTACTGTATTGCGTGCAAATTATGTAAGAAGAAAGGGAATTTCTTTCTGTGAGCCAGTTTTAAATATTGCACAAATTCTT
GGGGAGAGGATTTTGTTGAGTGAATGTGAAACTAAAGCAAAGTCAGGTAGCCGGAAGGGAAGGAGTCGACGATCACGGACAACTGAGAAATGTAAAACAGAACAGATAGAAAGCTATAGTGAATGGCAAGGACCTCCACCATGGGACCCTTTACTTGGTGGTGACGGAGTTCCTAGATTTCTTTGTGATGTTATGGTTGA
AGGTTTGGCAAAACAGCTTCGCTGTGTTGGTATTGATGCCGCAACTCCATCTGTAAAGAAGGCTGAACCAAGGCAATTGATAGACCAAGCACAAGAAGAGAGAAGAATACTCTTGACACGAGACATCAAACTTTTGAGACGTCATATGAAGCCCAGCAATCAAGCATATAGGGTGAAGAATCTTGCCAAGCAAGAACAAC
TTCATGAGgtcattaagatgtttaatctcaaaatatgcgagtaccaacttatgtctaggtgtattaaatgcaacggaatattcattgaaaaatcattgacagCAATTGAAGCTGTAGCTGCTACAACAACAGAACAAGTGATTCCAGAGTTTCTATTAGATCGTGATTTAGAATTTTGGCAGTGCTCACATTGTCGGCAA
ATATATTGGGAGGGTACCCAATACCATAATGCGATTCAACAATTCTCCAGTGTTTGTAAGGTTTCTGAGTGATTTTGGAGTCAACTTTTTTTGAATGACCATACCTCGTATAAACTTTGAGGGAATCCGTTATTATGTGATGATTATGCAAATACAACTTTATTTTCTAAGAGATAAAATGATTGACACCAACTCACATC
TTGTGGGACATTCTTCTTATAAGAAAGGACGTGCAAGAGATAAAATAATTGACACCAACTCACATCTTGTGGGACATTCTTCTTATAAGAAAGGACACGCTTCCTAATATGGAACCTTATTTTGTATTAATTAAGTGAATGGTAGTATATGGCTTATTCCCTAA