NA ----> NA
Intron 1 GTGACCCTCA ... GTCTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 2 | 3 |
| A2 | 85.71 | 1 | 6 | 6 |
| A3 | 87.5 | 1 | 7 | 7 |
| A4 | 36.84 | 6 | 4 | 3 |
| A5 | 45.45 | 3 | 4 | 1 |
| A6 | 61.9 | 8 | 15 | 11 |
| A7 | 67.21 | 10 | 33 | 8 |
| A8 | 61.54 | 15 | 21 | 27 |
| A9 | 61.36 | 17 | 41 | 13 |
| A10 | 54.29 | 24 | 34 | 23 |
>TRINITY_DN38073_c0_g1_i3 from sample A7 / Example spliced isoformTATCGTGCCACCTTATCATGCACCCATTTCTCATTTATTGAAGCAGGTTTTTAATCAGGTTGGAATGACAGAGTCACCATGCTTTCAGTTTCCTTCTTCTCACTCTCCTCCTTCGGTCGGTCAGGCAGAAACTTGGCCGATTCAGGTAGAAGGGTGAGACCACAAACGAGAGCAATTGCAGTGTCCGAAGCTAAAGTCGA
TGGCCCACTTGAGTAGAAGAGTGGTTTCAGTTCGTCATGGAGCAAGAATATTTTGTTAGTTCATCTAACCTTATCTCTCAAACACCCGGAAAAACTCTGGTTACTGTGGGTATGATGTATCGTGCTGTGTGTGACTTTGAAAGAAACCTTGGGATAGGGATGAAAGGAATGCAGATAGGCAAGCTAAATTTGAAGAAAAA
TTGGTTGCGCTGGTTAAAGTGTTGGATAAGGACTGACAAGAGGATGAAGCCCTCAAGCAAAGCATCCAGAAACGCCTGGGGTATCTAGTGGGTTGTGGCGAAGAAGGAACTGGATCTACATAGAGGAAAAAAACTCCCTCAGGCCCGGAAAAGAAGAAGCGCTCCTCGTGTGTTTACGGCACTGTATTACCATCTGTACA
GCTGACATCATCAACATGTGAGTTGCCGCAGTAATAAGAGAGGTCCGCTGCTTTTTAAAGAGAAAATTTGGCTTGATATTTTCTTCATTTCTGCTATTAGACTGCCTTAACAGGAGAAACCACTATGGTGATGTTTGTAAAAAAAGGGAAATGACCAGAGGTTGGAATGTTTTAGCCCATACAGCTGACATCGTCAACAT
GTGAGTTGCTGCAGTAATTAGAGAGGTCCGCTGCCTTTTAAAGAGGAAATTTGGCTCCACATTTTCTCCATTTCTGCTATTCGTTTGCCTTAACAGCAGAAACTACCATGGTGATGTTTGTGAAAAAGGGAATGAGCAGAGGTTGGAATGTACTGGCCCAGCTGGGATTTAGGCATTGCAACATAAAAGCAACAGGAAAT
TAATATCAACATGCATCTCCAACTCATATGAGATTCCATAGAATCTGTCAACATCAGGGCTTCTTTTAGCTTAACAGGGCATGCTCAAGATGTTAACTTTTTATATTTACTATACTATGATACAGTTAAATGTAATGTTTTGATAGCTTCTTGGGACACTTTGTAATTGTGAATGCAATTGAGCAATAGCAATTTAACCT
CTAGAATCATCCATAACAGCATACATTATAGCCAAGACCGTCTATGAAAATATATTAATTTTTT
>TRINITY_DN38073_c0_g1_i2 from sample A7 / Example unspliced isoform:TATCGTGCCACCTTATCATGCACCCATTTCTCATTTATTGAAGCAGGTTTTTAATCAGGTTGGAATGACAGAGTCACCATGCTTTCAGTTTCCTTCTTCTCACTCTCCTCCTTCGGTCGGTCAGGCAGAAACTTGGCCGATTCAGGTAGAAGGGTGAGACCACAAACGAGAGCAATTGCAGTGTCCGAAGCTAAAGTCGA
TGGCCCACTTGAGTAGAAGAGTGGTTTCAGTTCGTCATGGAGCAAGAATATTTTGTTAGTTCATCTAACCTTATCTCTCAAACACCCGGAAAAACTCTGGTTACTGTGGGTATGATGTATCGTGCTGTGTGTGACTTTGAAAGAAACCTTGGGATAGGGATGAAAGGAATGCAGATAGGCAAGCTAAATTTGAAGAAAAA
TTGGTTGCGCTGGTTAAAGTGTTGGATAAGGACTGACAAGAGGATGAAGCCCTCAAGCAAAGCATCCAGAAACGCCTGGGGTATCTAGTGGGTTGTGGCGAAGAAGGAACTGGATCTACATAGAGGAAAAAAACTCCCTCAGGCCCGGAAAAGAAGAAGCGCTCCTCGTGTGTTTACGGCACTGTATTACCATCTGTACA
GgtgaccctcagtttttgagactcgggaggcttatatataaacaaaaacaaacaaaaaaattatttacccaaaaaatatcagcaaatagaataattctgtctttaccaatcagcaatcacctgtctgtacagCTGACATCATCAACATGTGAGTTGCCGCAGTAATAAGAGAGGTCCGCTGCTTTTTAAAGAGAAAATTT
GGCTTGATATTTTCTTCATTTCTGCTATTAGACTGCCTTAACAGGAGAAACCACTATGGTGATGTTTGTAAAAAAAGGGAAATGACCAGAGGTTGGAATGTTTTAGCCCATACAGCTGACATCGTCAACATGTGAGTTGCTGCAGTAATTAGAGAGGTCCGCTGCCTTTTAAAGAGGAAATTTGGCTCCACATTTTCTCC
ATTTCTGCTATTCGTTTGCCTTAACAGCAGAAACTACCATGGTGATGTTTGTGAAAAAGGGAATGAGCAGAGGTTGGAATGTACTGGCCCAGCTGGGATTTAGGCATTGCAACATAAAAGCAACAGGAAATTAATATCAACATGCATCTCCAACTCATATGAGATTCCATAGAATCTGTCAACATCAGGGCTTCTTTTAG
CTTAACAGGGCATGCTCAAGATGTTAACTTTTTATATTTACTATACTATGATACAGTTAAATGTAATGTTTTGATAGCTTCTTGGGACACTTTGTAATTGTGAATGCAATTGAGCAATAGCAATTTAACCTCTAGAATCATCCATAACAGCATACATTATAGCCAAGACCGTCTATGAAAATATATTAATTTTTT
Intron 2 GTAGTTTCAG ... GTCTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 2 | 3 |
| A2 | 80 | 1 | 2 | 6 |
| A3 | 83.33 | 1 | 3 | 7 |
| A4 | 40 | 6 | 5 | 3 |
| A5 | 33.33 | 3 | 2 | 1 |
| A6 | 48.39 | 8 | 4 | 11 |
| A7 | 41.18 | 10 | 6 | 8 |
| A8 | 52.38 | 15 | 6 | 27 |
| A9 | 37.04 | 17 | 7 | 13 |
| A10 | 41.46 | 24 | 11 | 23 |
>TRINITY_DN38501_c0_g4_i3 from sample A6 / Example spliced isoformCTTCTCACTCTCCTCCTTCGGTCGGTCAGGCAGAAACTTGGCCGATTCAGGTAGAAGGGTGAGACCACAAACGAGAGCAATTGCAGTGTCCGAAGCTAAAGTCGATGGCCCACTTGAGTAGAAGAGTGGTTTCAGTTCGTCATGGAGCAAGAATATTTTGTTAGTTCATCTAACCTTATCTCTCAAACACCCGGAAAAAC
TCTGGTTACTGTGGGTATGATGTATCGTGCTGTGTGTGACTTTGAAAGAAACCTTGGGATAGGGATGAAAGGAATGCAGATAGGCAAGCTAAATTTGAAGAAAAATTGGTTGCGCTGGTTAAAGTGTTGGATAAGGACTGACAAGAGGATGAAGCCCTCAAGCAAAGCATCCAGAAACGCCTGGGGTATCTAGTGGGTTG
TGGCGAAGAAGGAACTGGATCTACATAGAGGAAAAAAACTCCCTCAGGCCCGGAAAAGAAGAAGCGCTCCTCGTGTGTTTACGGCACTGTATTACCATCTGTACAGCTGACATCATCAACATGTGAGTTGCCGCAGTAATAAGAGAGGTCCGCTGCTTTTTAAAGAGAAAATTTGGCTTGATATTTTCTTCATTTCTGCT
ATTAGACTGCCTTAACAGGAGAAACCACTATGGTGATGTTTGTAAAAAAAGGGAAATGACCAGAGGTTGGAATGTTTTAGCCCATACAGCTGACATCGTCAACATGTGAGTTGCTGCAGTAATTAGAGAGGTCCGCTGCCTTTTAAAGAGGAAATTTGGCTCCACATTTTCTCCATTTCTGCTATTCGTTTGCCTTAACA
GCAGAAACTACCATGGTGATGTTTGTGAAAAAGGGAATGAGCAGAGGTTGGAATGTACTGGCCCAGCTGGGATTTAGGCATTGCAACATAAAAGCAACAGGAAATTAATATCAACATGCATCTCCAACTCATATGAGATTCCATAGAATCTGTCAACATCAGGGCTTCTTTTAGCTTAACAGGGCATGCTCAAGATGTTA
ACTTTTTATATTTACTATACTATGATACAGTTAAATGTAATGTTTTGATAGCTTCTTGGGACACTTTGTAATTGTGAATGCAATTGAGCAATAGCAATTTAACCTCTAGAATCATCCATAACAGCATACATTATAGCCAAGACCGTCTATGAAAATATATTAATTTTTAAGGGTCTTATTTCTGGTTATCTTGTGTTATT
GGTTGTGTAAGCATGGCTCCAGAAAAGCTATCCATACGTACCTTATCCTCAAAGGTCTCAATAATTACTTCCG
>TRINITY_DN38501_c0_g4_i4 from sample A6 / Example unspliced isoform:CTTCTCACTCTCCTCCTTCGGTCGGTCAGGCAGAAACTTGGCCGATTCAGGTAGAAGGGTGAGACCACAAACGAGAGCAATTGCAGTGTCCGAAGCTAAAGTCGATGGCCCACTTGAGTAGAAGAGTGGTTTCAGTTCGTCATGGAGCAAGAATATTTTGTTAGTTCATCTAACCTTATCTCTCAAACACCCGGAAAAAC
TCTGGTTACTGTGGGTATGATGTATCGTGCTGTGTGTGACTTTGAAAGAAACCTTGGGATAGGGATGAAAGGAATGCAGATAGGCAAGCTAAATTTGAAGAAAAATTGGTTGCGCTGGTTAAAGTGTTGGATAAGGACTGACAAGAGGATGAAGCCCTCAAGCAAAGCATCCAGAAACGCCTGGGGTATCTAGTGGGTTG
TGGCGAAGAAGGAACTGGATCTACATAGAGGAAAAAAACTCCCTCAGGCCCGGAAAAGAAGAAGCGCTCCTCGTGTGTTTACGGCACTGTATTACCATCTGTACAGgtagtttcagttttattatgttgtctgtgtccgttttgaaaccaaatgggtgactattttatgtgttctgttgttaaattatgtttgggtctct
agtctttcggatagtaagatttctagtttgagtcagaaaggcaaaatgtttactattagctctgttttgaacaaatctatatgtaatcatatctccaggtatgttgtataggtgaccctcagtttttgagactcgggaggcttatatataaacaaaaacaaacaaaaaaattatttacccaaaaaatatcagcaaataga
ataattctgtctttaccaatcagcaatcacctgtctgtacagCTGACATCATCAACATGTGAGTTGCCGCAGTAATAAGAGAGGTCCGCTGCTTTTTAAAGAGAAAATTTGGCTTGATATTTTCTTCATTTCTGCTATTAGACTGCCTTAACAGGAGAAACCACTATGGTGATGTTTGTAAAAAAAGGGAAATGACCAGA
GGTTGGAATGTTTTAGCCCATACAGCTGACATCGTCAACATGTGAGTTGCTGCAGTAATTAGAGAGGTCCGCTGCCTTTTAAAGAGGAAATTTGGCTCCACATTTTCTCCATTTCTGCTATTCGTTTGCCTTAACAGCAGAAACTACCATGGTGATGTTTGTGAAAAAGGGAATGAGCAGAGGTTGGAATGTACTGGCCC
AGCTGGGATTTAGGCATTGCAACATAAAAGCAACAGGAAATTAATATCAACATGCATCTCCAACTCATATGAGATTCCATAGAATCTGTCAACATCAGGGCTTCTTTTAGCTTAACAGGGCATGCTCAAGATGTTAACTTTTTATATTTACTATACTATGATACAGTTAAATGTAATGTTTTGATAGCTTCTTGGGACAC
TTTGTAATTGTGAATGCAATTGAGCAATAGCAATTTAACCTCTAGAATCATCCATAACAGCATACATTATAGCCAAGACCGTCTATGAAAATATATTAATTTTTAAGGGTCTTATTTCTGGTTATCTTGTGTTATTGGTTGTGTAAGCATGGCTCCAGAAAAGCTATCCATACGTACCTTATCCTCAAAGGTCTCAATAA
TTACTTCCG
Intron 3 GTATGTTGTA ... GTCTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 2 | 3 |
| A2 | 85.71 | 1 | 6 | 6 |
| A3 | 85.71 | 1 | 5 | 7 |
| A4 | 36.84 | 6 | 4 | 3 |
| A5 | 45.45 | 3 | 4 | 1 |
| A6 | 61.9 | 8 | 15 | 11 |
| A7 | 67.74 | 10 | 34 | 8 |
| A8 | 61.54 | 15 | 21 | 27 |
| A9 | 61.36 | 17 | 41 | 13 |
| A10 | 54.29 | 24 | 34 | 23 |
>TRINITY_DN38501_c0_g4_i3 from sample A6 / Example spliced isoformCTTCTCACTCTCCTCCTTCGGTCGGTCAGGCAGAAACTTGGCCGATTCAGGTAGAAGGGTGAGACCACAAACGAGAGCAATTGCAGTGTCCGAAGCTAAAGTCGATGGCCCACTTGAGTAGAAGAGTGGTTTCAGTTCGTCATGGAGCAAGAATATTTTGTTAGTTCATCTAACCTTATCTCTCAAACACCCGGAAAAAC
TCTGGTTACTGTGGGTATGATGTATCGTGCTGTGTGTGACTTTGAAAGAAACCTTGGGATAGGGATGAAAGGAATGCAGATAGGCAAGCTAAATTTGAAGAAAAATTGGTTGCGCTGGTTAAAGTGTTGGATAAGGACTGACAAGAGGATGAAGCCCTCAAGCAAAGCATCCAGAAACGCCTGGGGTATCTAGTGGGTTG
TGGCGAAGAAGGAACTGGATCTACATAGAGGAAAAAAACTCCCTCAGGCCCGGAAAAGAAGAAGCGCTCCTCGTGTGTTTACGGCACTGTATTACCATCTGTACAGCTGACATCATCAACATGTGAGTTGCCGCAGTAATAAGAGAGGTCCGCTGCTTTTTAAAGAGAAAATTTGGCTTGATATTTTCTTCATTTCTGCT
ATTAGACTGCCTTAACAGGAGAAACCACTATGGTGATGTTTGTAAAAAAAGGGAAATGACCAGAGGTTGGAATGTTTTAGCCCATACAGCTGACATCGTCAACATGTGAGTTGCTGCAGTAATTAGAGAGGTCCGCTGCCTTTTAAAGAGGAAATTTGGCTCCACATTTTCTCCATTTCTGCTATTCGTTTGCCTTAACA
GCAGAAACTACCATGGTGATGTTTGTGAAAAAGGGAATGAGCAGAGGTTGGAATGTACTGGCCCAGCTGGGATTTAGGCATTGCAACATAAAAGCAACAGGAAATTAATATCAACATGCATCTCCAACTCATATGAGATTCCATAGAATCTGTCAACATCAGGGCTTCTTTTAGCTTAACAGGGCATGCTCAAGATGTTA
ACTTTTTATATTTACTATACTATGATACAGTTAAATGTAATGTTTTGATAGCTTCTTGGGACACTTTGTAATTGTGAATGCAATTGAGCAATAGCAATTTAACCTCTAGAATCATCCATAACAGCATACATTATAGCCAAGACCGTCTATGAAAATATATTAATTTTTAAGGGTCTTATTTCTGGTTATCTTGTGTTATT
GGTTGTGTAAGCATGGCTCCAGAAAAGCTATCCATACGTACCTTATCCTCAAAGGTCTCAATAATTACTTCCG
>TRINITY_DN38501_c0_g4_i2 from sample A6 / Example unspliced isoform:CTTCTCACTCTCCTCCTTCGGTCGGTCAGGCAGAAACTTGGCCGATTCAGGTAGAAGGGTGAGACCACAAACGAGAGCAATTGCAGTGTCCGAAGCTAAAGTCGATGGCCCACTTGAGTAGAAGAGTGGTTTCAGTTCGTCATGGAGCAAGAATATTTTGTTAGTTCATCTAACCTTATCTCTCAAACACCCGGAAAAAC
TCTGGTTACTGTGGGTATGATGTATCGTGCTGTGTGTGACTTTGAAAGAAACCTTGGGATAGGGATGAAAGGAATGCAGATAGGCAAGCTAAATTTGAAGAAAAATTGGTTGCGCTGGTTAAAGTGTTGGATAAGGACTGACAAGAGGATGAAGCCCTCAAGCAAAGCATCCAGAAACGCCTGGGGTATCTAGTGGGTTG
TGGCGAAGAAGGAACTGGATCTACATAGAGGAAAAAAACTCCCTCAGGCCCGGAAAAGAAGAAGCGCTCCTCGTGTGTTTACGGCACTGTATTACCATCTGTACAGgtatgttgtataggtgaccctcagtttttgagactcgggaggcttatatataaacaaaaacaaacaaaaaaattatttacccaaaaaatatcag
caaatagaataattctgtctttaccaatcagcaatcacctgtctgtacagCTGACATCATCAACATGTGAGTTGCCGCAGTAATAAGAGAGGTCCGCTGCTTTTTAAAGAGAAAATTTGGCTTGATATTTTCTTCATTTCTGCTATTAGACTGCCTTAACAGGAGAAACCACTATGGTGATGTTTGTAAAAAAAGGGAAA
TGACCAGAGGTTGGAATGTTTTAGCCCATACAGCTGACATCGTCAACATGTGAGTTGCTGCAGTAATTAGAGAGGTCCGCTGCCTTTTAAAGAGGAAATTTGGCTCCACATTTTCTCCATTTCTGCTATTCGTTTGCCTTAACAGCAGAAACTACCATGGTGATGTTTGTGAAAAAGGGAATGAGCAGAGGTTGGAATGT
ACTGGCCCAGCTGGGATTTAGGCATTGCAACATAAAAGCAACAGGAAATTAATATCAACATGCATCTCCAACTCATATGAGATTCCATAGAATCTGTCAACATCAGGGCTTCTTTTAGCTTAACAGGGCATGCTCAAGATGTTAACTTTTTATATTTACTATACTATGATACAGTTAAATGTAATGTTTTGATAGCTTCT
TGGGACACTTTGTAATTGTGAATGCAATTGAGCAATAGCAATTTAACCTCTAGAATCATCCATAACAGCATACATTATAGCCAAGACCGTCTATGAAAATATATTAATTTTTAAGGGTCTTATTTCTGGTTATCTTGTGTTATTGGTTGTGTAAGCATGGCTCCAGAAAAGCTATCCATACGTACCTTATCCTCAAAGGT
CTCAATAATTACTTCCG
Intron 4 GTAGTTTCAG ... ATATCTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60 | 2 | 2 | 4 |
| A2 | 20 | 6 | 2 | 1 |
| A3 | 37.5 | 5 | 3 | 3 |
| A4 | 38.46 | 4 | 5 | 0 |
| A5 | 27.27 | 4 | 2 | 1 |
| A6 | 25 | 15 | 4 | 6 |
| A7 | 18.07 | 34 | 6 | 9 |
| A8 | 17.65 | 21 | 6 | 3 |
| A9 | 17.17 | 41 | 7 | 10 |
| A10 | 22.73 | 34 | 11 | 9 |
>TRINITY_DN38501_c0_g4_i2 from sample A6 / Example spliced isoformCTTCTCACTCTCCTCCTTCGGTCGGTCAGGCAGAAACTTGGCCGATTCAGGTAGAAGGGTGAGACCACAAACGAGAGCAATTGCAGTGTCCGAAGCTAAAGTCGATGGCCCACTTGAGTAGAAGAGTGGTTTCAGTTCGTCATGGAGCAAGAATATTTTGTTAGTTCATCTAACCTTATCTCTCAAACACCCGGAAAAAC
TCTGGTTACTGTGGGTATGATGTATCGTGCTGTGTGTGACTTTGAAAGAAACCTTGGGATAGGGATGAAAGGAATGCAGATAGGCAAGCTAAATTTGAAGAAAAATTGGTTGCGCTGGTTAAAGTGTTGGATAAGGACTGACAAGAGGATGAAGCCCTCAAGCAAAGCATCCAGAAACGCCTGGGGTATCTAGTGGGTTG
TGGCGAAGAAGGAACTGGATCTACATAGAGGAAAAAAACTCCCTCAGGCCCGGAAAAGAAGAAGCGCTCCTCGTGTGTTTACGGCACTGTATTACCATCTGTACAGGTATGTTGTATAGGTGACCCTCAGTTTTTGAGACTCGGGAGGCTTATATATAAACAAAAACAAACAAAAAAATTATTTACCCAAAAAATATCAG
CAAATAGAATAATTCTGTCTTTACCAATCAGCAATCACCTGTCTGTACAGCTGACATCATCAACATGTGAGTTGCCGCAGTAATAAGAGAGGTCCGCTGCTTTTTAAAGAGAAAATTTGGCTTGATATTTTCTTCATTTCTGCTATTAGACTGCCTTAACAGGAGAAACCACTATGGTGATGTTTGTAAAAAAAGGGAAA
TGACCAGAGGTTGGAATGTTTTAGCCCATACAGCTGACATCGTCAACATGTGAGTTGCTGCAGTAATTAGAGAGGTCCGCTGCCTTTTAAAGAGGAAATTTGGCTCCACATTTTCTCCATTTCTGCTATTCGTTTGCCTTAACAGCAGAAACTACCATGGTGATGTTTGTGAAAAAGGGAATGAGCAGAGGTTGGAATGT
ACTGGCCCAGCTGGGATTTAGGCATTGCAACATAAAAGCAACAGGAAATTAATATCAACATGCATCTCCAACTCATATGAGATTCCATAGAATCTGTCAACATCAGGGCTTCTTTTAGCTTAACAGGGCATGCTCAAGATGTTAACTTTTTATATTTACTATACTATGATACAGTTAAATGTAATGTTTTGATAGCTTCT
TGGGACACTTTGTAATTGTGAATGCAATTGAGCAATAGCAATTTAACCTCTAGAATCATCCATAACAGCATACATTATAGCCAAGACCGTCTATGAAAATATATTAATTTTTAAGGGTCTTATTTCTGGTTATCTTGTGTTATTGGTTGTGTAAGCATGGCTCCAGAAAAGCTATCCATACGTACCTTATCCTCAAAGGT
CTCAATAATTACTTCCG
>TRINITY_DN38501_c0_g4_i4 from sample A6 / Example unspliced isoform:CTTCTCACTCTCCTCCTTCGGTCGGTCAGGCAGAAACTTGGCCGATTCAGGTAGAAGGGTGAGACCACAAACGAGAGCAATTGCAGTGTCCGAAGCTAAAGTCGATGGCCCACTTGAGTAGAAGAGTGGTTTCAGTTCGTCATGGAGCAAGAATATTTTGTTAGTTCATCTAACCTTATCTCTCAAACACCCGGAAAAAC
TCTGGTTACTGTGGGTATGATGTATCGTGCTGTGTGTGACTTTGAAAGAAACCTTGGGATAGGGATGAAAGGAATGCAGATAGGCAAGCTAAATTTGAAGAAAAATTGGTTGCGCTGGTTAAAGTGTTGGATAAGGACTGACAAGAGGATGAAGCCCTCAAGCAAAGCATCCAGAAACGCCTGGGGTATCTAGTGGGTTG
TGGCGAAGAAGGAACTGGATCTACATAGAGGAAAAAAACTCCCTCAGGCCCGGAAAAGAAGAAGCGCTCCTCGTGTGTTTACGGCACTGTATTACCATCTGTACAGgtagtttcagttttattatgttgtctgtgtccgttttgaaaccaaatgggtgactattttatgtgttctgttgttaaattatgtttgggtctct
agtctttcggatagtaagatttctagtttgagtcagaaaggcaaaatgtttactattagctctgttttgaacaaatctatatgtaatcatatctccagGTATGTTGTATAGGTGACCCTCAGTTTTTGAGACTCGGGAGGCTTATATATAAACAAAAACAAACAAAAAAATTATTTACCCAAAAAATATCAGCAAATAGA
ATAATTCTGTCTTTACCAATCAGCAATCACCTGTCTGTACAGCTGACATCATCAACATGTGAGTTGCCGCAGTAATAAGAGAGGTCCGCTGCTTTTTAAAGAGAAAATTTGGCTTGATATTTTCTTCATTTCTGCTATTAGACTGCCTTAACAGGAGAAACCACTATGGTGATGTTTGTAAAAAAAGGGAAATGACCAGA
GGTTGGAATGTTTTAGCCCATACAGCTGACATCGTCAACATGTGAGTTGCTGCAGTAATTAGAGAGGTCCGCTGCCTTTTAAAGAGGAAATTTGGCTCCACATTTTCTCCATTTCTGCTATTCGTTTGCCTTAACAGCAGAAACTACCATGGTGATGTTTGTGAAAAAGGGAATGAGCAGAGGTTGGAATGTACTGGCCC
AGCTGGGATTTAGGCATTGCAACATAAAAGCAACAGGAAATTAATATCAACATGCATCTCCAACTCATATGAGATTCCATAGAATCTGTCAACATCAGGGCTTCTTTTAGCTTAACAGGGCATGCTCAAGATGTTAACTTTTTATATTTACTATACTATGATACAGTTAAATGTAATGTTTTGATAGCTTCTTGGGACAC
TTTGTAATTGTGAATGCAATTGAGCAATAGCAATTTAACCTCTAGAATCATCCATAACAGCATACATTATAGCCAAGACCGTCTATGAAAATATATTAATTTTTAAGGGTCTTATTTCTGGTTATCTTGTGTTATTGGTTGTGTAAGCATGGCTCCAGAAAAGCTATCCATACGTACCTTATCCTCAAAGGTCTCAATAA
TTACTTCCG
Intron 5 GTAGTTTCAG ... TGTTGTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60 | 2 | 2 | 4 |
| A2 | 20 | 6 | 2 | 1 |
| A3 | 33.33 | 7 | 3 | 4 |
| A4 | 38.46 | 4 | 5 | 0 |
| A5 | 27.27 | 4 | 2 | 1 |
| A6 | 25 | 15 | 4 | 6 |
| A7 | 18.52 | 33 | 6 | 9 |
| A8 | 17.65 | 21 | 6 | 3 |
| A9 | 17.17 | 41 | 7 | 10 |
| A10 | 22.73 | 34 | 11 | 9 |
>TRINITY_DN38073_c0_g1_i2 from sample A7 / Example spliced isoformTATCGTGCCACCTTATCATGCACCCATTTCTCATTTATTGAAGCAGGTTTTTAATCAGGTTGGAATGACAGAGTCACCATGCTTTCAGTTTCCTTCTTCTCACTCTCCTCCTTCGGTCGGTCAGGCAGAAACTTGGCCGATTCAGGTAGAAGGGTGAGACCACAAACGAGAGCAATTGCAGTGTCCGAAGCTAAAGTCGA
TGGCCCACTTGAGTAGAAGAGTGGTTTCAGTTCGTCATGGAGCAAGAATATTTTGTTAGTTCATCTAACCTTATCTCTCAAACACCCGGAAAAACTCTGGTTACTGTGGGTATGATGTATCGTGCTGTGTGTGACTTTGAAAGAAACCTTGGGATAGGGATGAAAGGAATGCAGATAGGCAAGCTAAATTTGAAGAAAAA
TTGGTTGCGCTGGTTAAAGTGTTGGATAAGGACTGACAAGAGGATGAAGCCCTCAAGCAAAGCATCCAGAAACGCCTGGGGTATCTAGTGGGTTGTGGCGAAGAAGGAACTGGATCTACATAGAGGAAAAAAACTCCCTCAGGCCCGGAAAAGAAGAAGCGCTCCTCGTGTGTTTACGGCACTGTATTACCATCTGTACA
GGTGACCCTCAGTTTTTGAGACTCGGGAGGCTTATATATAAACAAAAACAAACAAAAAAATTATTTACCCAAAAAATATCAGCAAATAGAATAATTCTGTCTTTACCAATCAGCAATCACCTGTCTGTACAGCTGACATCATCAACATGTGAGTTGCCGCAGTAATAAGAGAGGTCCGCTGCTTTTTAAAGAGAAAATTT
GGCTTGATATTTTCTTCATTTCTGCTATTAGACTGCCTTAACAGGAGAAACCACTATGGTGATGTTTGTAAAAAAAGGGAAATGACCAGAGGTTGGAATGTTTTAGCCCATACAGCTGACATCGTCAACATGTGAGTTGCTGCAGTAATTAGAGAGGTCCGCTGCCTTTTAAAGAGGAAATTTGGCTCCACATTTTCTCC
ATTTCTGCTATTCGTTTGCCTTAACAGCAGAAACTACCATGGTGATGTTTGTGAAAAAGGGAATGAGCAGAGGTTGGAATGTACTGGCCCAGCTGGGATTTAGGCATTGCAACATAAAAGCAACAGGAAATTAATATCAACATGCATCTCCAACTCATATGAGATTCCATAGAATCTGTCAACATCAGGGCTTCTTTTAG
CTTAACAGGGCATGCTCAAGATGTTAACTTTTTATATTTACTATACTATGATACAGTTAAATGTAATGTTTTGATAGCTTCTTGGGACACTTTGTAATTGTGAATGCAATTGAGCAATAGCAATTTAACCTCTAGAATCATCCATAACAGCATACATTATAGCCAAGACCGTCTATGAAAATATATTAATTTTTT
>TRINITY_DN38073_c0_g1_i1 from sample A7 / Example unspliced isoform:TATCGTGCCACCTTATCATGCACCCATTTCTCATTTATTGAAGCAGGTTTTTAATCAGGTTGGAATGACAGAGTCACCATGCTTTCAGTTTCCTTCTTCTCACTCTCCTCCTTCGGTCGGTCAGGCAGAAACTTGGCCGATTCAGGTAGAAGGGTGAGACCACAAACGAGAGCAATTGCAGTGTCCGAAGCTAAAGTCGA
TGGCCCACTTGAGTAGAAGAGTGGTTTCAGTTCGTCATGGAGCAAGAATATTTTGTTAGTTCATCTAACCTTATCTCTCAAACACCCGGAAAAACTCTGGTTACTGTGGGTATGATGTATCGTGCTGTGTGTGACTTTGAAAGAAACCTTGGGATAGGGATGAAAGGAATGCAGATAGGCAAGCTAAATTTGAAGAAAAA
TTGGTTGCGCTGGTTAAAGTGTTGGATAAGGACTGACAAGAGGATGAAGCCCTCAAGCAAAGCATCCAGAAACGCCTGGGGTATCTAGTGGGTTGTGGCGAAGAAGGAACTGGATCTACATAGAGGAAAAAAACTCCCTCAGGCCCGGAAAAGAAGAAGCGCTCCTCGTGTGTTTACGGCACTGTATTACCATCTGTACA
Ggtagtttcagttttattatgttgtctgtgtccgttttgaaaccaaatgggtgactattttatgtgttctgttgttaaattatgtttgggtctctagtctttcggatagtaagatttctagtttgagtcagaaaggcaaaatgtttactattagctctgttttgaacaaatctatatgtaatcatatctccaggtatgtt
gtatagGTGACCCTCAGTTTTTGAGACTCGGGAGGCTTATATATAAACAAAAACAAACAAAAAAATTATTTACCCAAAAAATATCAGCAAATAGAATAATTCTGTCTTTACCAATCAGCAATCACCTGTCTGTACAGCTGACATCATCAACATGTGAGTTGCCGCAGTAATAAGAGAGGTCCGCTGCTTTTTAAAGAGAA
AATTTGGCTTGATATTTTCTTCATTTCTGCTATTAGACTGCCTTAACAGGAGAAACCACTATGGTGATGTTTGTAAAAAAAGGGAAATGACCAGAGGTTGGAATGTTTTAGCCCATACAGCTGACATCGTCAACATGTGAGTTGCTGCAGTAATTAGAGAGGTCCGCTGCCTTTTAAAGAGGAAATTTGGCTCCACATTT
TCTCCATTTCTGCTATTCGTTTGCCTTAACAGCAGAAACTACCATGGTGATGTTTGTGAAAAAGGGAATGAGCAGAGGTTGGAATGTACTGGCCCAGCTGGGATTTAGGCATTGCAACATAAAAGCAACAGGAAATTAATATCAACATGCATCTCCAACTCATATGAGATTCCATAGAATCTGTCAACATCAGGGCTTCT
TTTAGCTTAACAGGGCATGCTCAAGATGTTAACTTTTTATATTTACTATACTATGATACAGTTAAATGTAATGTTTTGATAGCTTCTTGGGACACTTTGTAATTGTGAATGCAATTGAGCAATAGCAATTTAACCTCTAGAATCATCCATAACAGCATACATTATAGCCAAGACCGTCTATGAAAATATATTAATTTTTT