NA ----> NA

Intron 1 GTCCCAGCAT ... TGAAGGGGAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	0	177	0	0
A2	0	148	0	0
A3	0	174	0	0
A4	0	139	0	0
A5	0	55	0	0
A6	0	305	0	0
A7	0	831	0	0
A8	0	746	0	0
A9	0	474	0	0
A10	0	679	0	0

>TRINITY_DN42817_c0_g2_i8 from sample A6 / Example spliced isoform

AGGATTGGTAAGAAGGGGAGGTGATTTCAGGGTTTGTAAGAGCTGAAGATGAGCCAAATTTGCAGGGTGCTTGCAATTTGCTGGAAGATTCACGAGGAGCGGAATTTTCCCATTTGATATCATTGCTGGGAGAAGAACAGATAGAGAGGAATCAGGATTGGTAAGAAGGGGAGGTCATTTCAGGGTTTGTAAGAGCTGAA
GATGAGCCAAATTTGCAGGGTGCTTGCAATTTGCTGGAAGATTCACGAGGAGCGGAATTTTCCCATTGCTATCATTGCTGGGAGAAGAACAGTCATTTCAGGGTTTGTAAGAGCTGAAGATGAGCCAAATTTGCTGGGTGCTTGCAATTTGCTGGCAGATTCACGAGGAGCGATAGAGAGGAACCCAACAGATTTGAGGA
TTGGTATGAAGGGGAGGTGATTTCAGGGTTCTTAAGAGCTGAGCCTGCAATTTTGGGAGAAATATTGTTGAAGATGGGATTGTTCAAGATGAGCCAAATTTGCTGGGTGCTTGCAATTTTGGGAGAAAGAAAGTTGAAGA

>TRINITY_DN42817_c0_g2_i10 from sample A6 / Example unspliced isoform:

GAAGATTCACGAGGAGCGGAATTTTCCCATTTGATATCATTGCTGGGAGAAGAACAGATAGAGAGGAACAGGATTGGTAAGAAGGGGAGGTCATTTCAGGGTTTTTTCAGAGCTGAAGATGAGTCAAATTTGCTGAGTGCTTGCAATTTGCTGGCAGATTCACGAGGAGCGGCATTCATTGCTGGGAGAAGAACAGGCAT
TTTCCCTTTGCTATCATTGCTTGGAGAAGAACAGATAGAGAGGAACAGGATTGGTAAGAAGGGGAGgtcccagcatatttcaggattggtatgaaggggagGTGATTTCAGGGTT

Intron 2 GTTTGTGTAA ... TTTTTTCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	67.24	48	84	113
A2	73.91	27	61	92
A3	77.7	30	100	109
A4	72.73	30	84	76
A5	72.83	25	70	64
A6	47.64	122	101	121
A7	52.6	237	252	274
A8	47.18	337	320	282
A9	62.08	153	241	260
A10	43.79	215	140	195

>TRINITY_DN49069_c1_g3_i1 from sample A7 / Example spliced isoform

AATTTTGGGAGAAAGATTGTTGAGGATGAGCCAAATTTGCTGGGTGCTTGCAATTTTGGGAGAAAGAAAGTTGAAGAAGAGCCACATCTTCTGGCTTGGCCAGAGCCAAACCAAGAAAAGACGAGAGAGTAGCGTAGAATAACTTTTGTGGTTGAATTATTGTTTTGTTTTTGTGTTTTTTGTTTCAAGCATGGCCATGC
TTATTTTACCTTCATTATGTGTGGATTTCTGTTTTCCATTATTTCTTTTTATTTTTATTTTTTATAATTCTTTCCTTTTCGTTTTGGGTTTTCTTGGTTAGTCTCTGTTTTTTGGTCTGGTTTGTTTGGGATCTAGAGGGAGGATGGAGGACTAAAATATCACCGGGTGGTGAACTGTGAAGGTGGTAAAGGAGTGCAGA
GCCAAAATTAGGTGCGCAAATCACTGATGCTGGAGATTTTCGGGATTGCAGGTGGAGAAGAGAGAGTTATTTTGAAGTGTTTTACATAAATACAAAAAAGGAGATGAGTAGTGACTGAAAGCTTTTTGCAAGAGATGAGTA

>TRINITY_DN49069_c1_g3_i3 from sample A7 / Example unspliced isoform:

AATTTTGGGAGAAAGATTGTTGAGGATGAGCCAAATTTGCTGGGTGCTTGCAATTTTGGGAGAAAGAAAGTTGAAGAAGAGCCACATCTTCTGGCTTGGCCAGAGCCAAACCAAGAAAAGACGAGAGAGTAGCGTAGAATAACTTTTGTGGTTGAATTATTGTTTTGTTTTTGTGTTTTTTGTTTCAAGCATGGCCATGC
TTATTTTACCTTCATTATGTGTGGATTTCTGTTTTCCATTATTTCTTTTTATTTTTATTTTTTATAATTCTTTCCTTTTCGTTTTGGGTTTTCTTGGTTAGTCTCTGTTTTTTGGTCTGGTTTGTTTGGGATCTAGAGGGAGGATGGAGGACTAAAATATCACCGGGTGGTGAACTGTGAAGGTGGTAAAGgtttgtgta
aatttaaatccctattgcattaatgtgtaaatttaatccgtattgaattttttcatcatgttctgttttgtccaggagtgcagagccagtttcatcatgttctattttttccagGAGTGCAGAGCCAAAATTAGGTGCGCAAATCACTGATGCTGGAGATTTTCGGGATTGCAGGTGGAGAAGAGAGAGTTATTTTGAAG
TGTTTTACATAAATACAAAAAAGGAGATGAGTAGTGACTGAAAGCTTTTTGCAAGAGATGAGTA

Intron 3 ATTTCAGGGT ... AGAGAGGAAC

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	80.45	26	77	137
A2	75.21	29	57	119
A3	76.44	47	124	181
A4	76.9	32	75	138
A5	73.4	25	38	100
A6	75.58	58	109	250
A7	76.11	132	242	599
A8	76.47	150	275	700
A9	74.04	108	230	386
A10	79.42	93	225	493

>TRINITY_DN42817_c0_g2_i4 from sample A6 / Example spliced isoform

GAAGATTCACGAGGAGCGGAATTTTCCCATTTGATATCATTGCTGGGAGAAGAACAGATAGAGAGGAACAGGATTGATTCACGAGGAGCGGCATTCATTGCTGGGAGAAGAACAGATAGAGAGGAACAGGATTGGTAAGAAGGGGAGGTCCCAGCATATTTCAGGATTGGTATGAAGGGGAGGTGATTTCAGGGTTTTTA
AGAGCTGAGCCTGCAATTTTGGGAGAAATATTGTTGAAGATGGGATTGTTCAAGATGAGCCAAATTTGCTGGGTGCTTGCAATTTTGGGAGAAAGAAAGTTGAAGAAGAACCACATCTCCTGGCTTGGCCAGAGCCAAATCAAGAAAAGACGAGAGAGTAGCGTAGAATAACTTTTGTGGTTGAATTATTGGTCTGTTTT
TGTGTTTTTTGTTTCAAGCATGGCCATGCTTATTTTA

>TRINITY_DN42817_c0_g2_i11 from sample A6 / Example unspliced isoform:

GAGGAACAGGATTGGTAAGAAGGGGAGGTCatttcagggttttttcagagctgaagatgagtcaaatttgctgagtgcttgcaatttgctggcagattcacgaggagcggcattcattgctgggagaagaacaggcattttccctttgctatcattgcttggagaagaacagatagagaggaacCCAGCATATTTCAGGA
TTGGTATGAAGGGGAGGTGATTTCAGGGTTTTTAAGAGCTGAGCCTGCAATTTTGGGAGAAATATTGTTGAAGATGGGATTGTTCAAGATGAGCCAAATTTGCTGGGTGCTTGCAATTTTGGGAGAAAGAAAGTTGAAGAAGAACCACATCTCCTGGCTTGGCCAGAGCCAAATCAAGAAAAGACGAGAGAGTAGCGTAG
AATAACTTTTGTGGTTGAATTATTGGTCTGTTTTTGTGTTTTTTGTTTCAAGCATGGCCATGCTTATTTTA