NA ----> NA
Intron 1 GCGGGAGTCT ... TTTCTGATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75 | 7 | 15 | 27 |
| A2 | 80.77 | 5 | 15 | 27 |
| A3 | 75.86 | 7 | 16 | 28 |
| A4 | 87.5 | 1 | 5 | 9 |
| A5 | 62.26 | 10 | 10 | 23 |
| A6 | 63.64 | 2 | 1 | 6 |
| A7 | 92.31 | 1 | 11 | 13 |
| A8 | 60 | 3 | 3 | 6 |
| A9 | 64.71 | 3 | 4 | 7 |
| A10 | 58.97 | 8 | 7 | 16 |
>TRINITY_DN44305_c1_g2_i4 from sample A9 / Example spliced isoformGGTCAAATAGACTATACTTGTAACGCCCGAGTTACCCTGAGAAATCCGTCAACAGGCCGTCACTTCCTCAAAATAGATGGCGGAGCTGGAGGGATTTCAAAATATGTTCGACAGCAGTTTGAAGCCTCAGTTGCTGTATCAGGTCACGGCTTCTCATTTTCCGGACGAGAAGCAGCCATCCCCAGACCCTGCGCAGTTGT
CTGCTGCGGCTTCCGTCATTCGGAGGCATAAGCTGTTGTCGGAAGCGAAGCAAACCGATGGCTGGAAAGCTGCTGTTGATGCTTGGAACGAACGCATTGTCAATTATGTTTCCAGTAAAATGCCAGACAAGTGTTGGGCTGGAATATGCATGCTAGGAGTGACTTGTCAGGAGTGTAATCGCCAACGATTTTTGGAATCT
TACTCCACTTGGTTTCAAAAGCTTCTTGTACATCTAAAGCCTCCAACTGATTCAGCTTTTCTTAGAGTGGCTGCATGTGCTTCGCTTTCAGACCTTTTAACTAGGTTGGGAAGCTTCCCCAGTGTCAAGAAAGAAGGAACCTCTCTTGCTGGAAAACTTGTACAACCAGTTTTGCAACTACTTGCTCAAGATGATTCGGA
AGATGTATTGAATGATGCAGCTGATCTATTTTGTGTTATGTTGAAGTGTTTTCCATCTTCTCTTCAACAACAATATGATAATGCAGAGTCTGTTCTGGCGTCCAAGATTCTGTATGGAAAATGCAGTATACAAATTTGCCAGAAATTTGCTCGGTGCTTGGCCTTTCTTCCCAGGGCTCGGAGTGATGGGGATAGCTGGT
ATTCAATGATGCAAAAGGTGTTGCTTGCAATAAATGAACATTTAAATGATGCCTTCCAAGGCTTTGAGGATGGTAATATAGTAAGTGAAGCAGTTGCTCCTTTGCTTCCACCTGGAAAGGATCCGCCTCCTCCTTTGGGAGGTGAACATGTGGCAAAAGAAGCTGTAGAGAAAACGAGAAACAAGTTCTTCCAACTGCTT
GTACCCAGAGTTTCTTCACTGATGCACTGCTGTTGTGTGATGCTTACAAATCCTTATCCGGTGCAGGTGACCATTCCTCTTGGGCCACTGCTGGCTCTTATTTCAAGAATTCTCAATGTAAATGGTTCACCATATCAACAGCCTCTTGGTATCATTGGTCAGAAGCACACATTTCTATGCATCGAACTTCCTGCATTGCA
CTCATATGCTTTGGATTTACTTGCTGCTATTGTCAAGGGTGTACGCAGTCAATTGCTACCTCGTGCAGCAAATATTGTTAGACTTTTGACAGAATATTTCAGACGGTGCCTCTCACCAGCCCTGCGGATCAAGCTATATTCTAATGCACGGGCCTTACTTATTTCTATGGGAGTTGGAATGGCTTCATATCTTGCACCAG
CTGTCATTTACAATGCGATAGCGGATTTGAAGGGTTCAAATTGTGGAGCTAGTTTAAACTCTCCAAATATAGCTGGGAAACCAAAATCATGCACAACGGGTGGTGGTGGCTTGGTGCAATCAAGCGCCCCACGAAAGAGGAAACACATCAGTGGGATATCAGGAGGCTATCCTGCATCCAGTGGGTTGGAAAGCGAGTTG
GCTACAAATGATGCTGTGGTGTCAATTCCAGTACAAATAAGTGCGCTCAAAGCCCTTGAAGCATTACTTACTGTGGGTGGATCTTTGCGTTCTGATCGTTGGAGAGCAGAGGTGGATTTGGTTCTGATTACTGTGGCAATGAATGCTTCAACTAATTCGTCCATCCTGCGGTTTTGTGACGAGGAAAATGTCTCTTGTTT
CGATGATGCAACATCTTTCACTACAGCAGATTTTCAGTTGGCAGCATATAAAGCTCTTTTGGCATCATTACTTTCGCCATGTTGTCACCGACCCCCTTACCTATCTCAAGGACTTGCATTATTTCGTAAAGGGAGGCAAGAATCTGGAACAGAACTTGCTGAATTCTGTGCCCATGCACTTTTAGCCCTTGAACCACTCA
TTCATCCACGCAGCCTTCCATATGTTGGCACACCTGCAATGGCCACAACTATGGCAACAGGCAAGGGAATCCAAGGAAATTTGGCTTCGCATATACAAAAATCTAATGTCTTCTTTCCAAATCCAGATGGCGGTCCATCTGCCCCTGGAGCTTCTGGTAGCATGTCTTTTGGATCGTCAATAAGAACTTTTCAGCATGGC
TTTCAACTTGGAGAAGATGATCTTTGTCAAGATGATGAAATATATCTGGGCTGGCTTGGAAATGGCGAGGACTCAAATGCAGATCAGCAACACCTTTATGATAATACTGAAATGCCCATTGAGAGTCTTGTAGAGACACTTACAGAGAATGGAGGATTACAATGCTCTGCTCTTGATGAAATGACAAACATGGCTTCTAT
ACAGTCTCCAGTTAATGATGAAATGCAGTCCATTCCCATTGTAGGTCTTAATAGTCCCTTCAGTTGTTCCAACATAGGAACTCTTCCAGTGGGGCCAGTTGAAACTGATAGGACTGACCCATTGAATATGTGTGAAGCTCAACAGCTTAAAGTGGATGAAACCCGAGATGCTAAGGTAGTAGCATCAATGAATGAAAATA
TTGGAATCACACAATGCGATCCGACAGCTACAGAGATAGGAAGCAATGGCAGGGAAACTGTTCTTGCTGAAGCTGCAACCAGTCATAGAGAAGCTCTTGTCACTGAAGCTGTAGAAACAACTGTAAATGTTCAAAATTCTAAGCAGGAAAGTGCAACTAGACTAACGGCAGATGACCAACTACTGGAAAACTTATCAGCC
CGATTTCCTTTCAAACCCTTACCTGTTTCTTCCACTGCAGAATCAGATTCTGATGCAATCCCAGATATTGTTGATGGTGATCCAGACACGGAATAATTAAATTGCCTTTTTTAAGTTTCAACTCAAATGCTTTTATAACCAATGCATTGTAGTTCACCAATCTGTTGAAAGCCGGAACAAACACAGTACTGCACCAAACA
CTTGTGTAACTAATATTACAGTTCTTGATTTTTCTACTTGCTTTTTGCTTGCAAGTGAATTTCTCATATTTTGGAAAGTATTGCTGTCACAAAAATTGTATCAGATGAGGAAATTATGGCTGCCTTGTACACTGTATTAGCATATTTGGCAGCCGATGTAAATTGGGAAATTTTGTTTTCTTGGTTCTTACATGCAGATC
GAAGATCACATGTCAAAAAGTCATGAGTTGTCTTTTAATGGGAAAATGTAATCTGAGTTTTGAGAATTTGTTTTACTGTTCACTGCAGTTTATTAAATTTGAGGCATCCATCTAGATGCAACAATCTGATCGTTCGAGGTTTTGGTAATTATAATTGTACAATTTGCTTTCCATGTGAATGGAGAAAACACATCAATCTG
CCACCCACAGTACGTCTTACAAATCTCCTCACCCAAACATCTAAATTAATCGAATTCAGTTTATTTTTTATTATTGGAAATGCAAATAAAATGGAGCAAC
>TRINITY_DN44305_c1_g2_i1 from sample A9 / Example unspliced isoform:GGTCAAATAGACTATACTTGTAACGCCCGAGTTACCCTGAGAAATCCGTCAACAGGCCGTCACTTCCTCAAAATAGgcgggagtctctaaaagtatcaatttctggagtctttctgatagATGGCGGAGCTGGAGGGATTTCAAAATATGTTCGACAGCAGTTTGAAGCCTCAGTTGCTGTATCAGGTCACGGCTTCTCA
TTTTCCGGACGAGAAGCAGCCATCCCCAGACCCTGCGCAGTTGTCTGCTGCGGCTTCCGTCATTCGGAGGCATAAGCTGTTGTCGGAAGCGAAGCAAACCGATGGCTGGAAAGCTGCTGTTGATGCTTGGAACGAACGCATTGTCAATTATGTTTCCAGTAAAATGCCAGACAAGTGTTGGGCTGGAATATGCATGCTAG
GAGTGACTTGTCAGGAGTGTAATCGCCAACGATTTTTGGAATCTTACTCCACTTGGTTTCAAAAGCTTCTTGTACATCTAAAGCCTCCAACTGATTCAGCTTTTCTTAGAGTGGCTGCATGTGCTTCGCTTTCAGACCTTTTAACTAGGTTGGGAAGCTTCCCCAGTGTCAAGAAAGAAGGAACCTCTCTTGCTGGAAAA
CTTGTACAACCAGTTTTGCAACTACTTGCTCAAGATGATTCGGAAGATGTATTGAATGATGCAGCTGATCTATTTTGTGTTATGTTGAAGTGTTTTCCATCTTCTCTTCAACAACAATATGATAATGCAGAGTCTGTTCTGGCGTCCAAGATTCTGTATGGAAAATGCAGTATACAAATTTGCCAGAAATTTGCTCGGTG
CTTGGCCTTTCTTCCCAGGGCTCGGAGTGATGGGGATAGCTGGTATTCAATGATGCAAAAGGTGTTGCTTGCAATAAATGAACATTTAAATGATGCCTTCCAAGGCTTTGAGGATGGTAATATAGTAAGTGAAGCAGTTGCTCCTTTGCTTCCACCTGGAAAGGATCCGCCTCCTCCTTTGGGAGGTGAACATGTGGCAA
AAGAAGCTGTAGAGAAAACGAGAAACAAGTTCTTCCAACTGCTTGTACCCAGAGTTTCTTCACTGATGCACTGCTGTTGTGTGATGCTTACAAATCCTTATCCGGTGCAGGTGACCATTCCTCTTGGGCCACTGCTGGCTCTTATTTCAAGAATTCTCAATGTAAATGGTTCACCATATCAACAGCCTCTTGGTATCATT
GGTCAGAAGCACACATTTCTATGCATCGAACTTCCTGCATTGCACTCATATGCTTTGGATTTACTTGCTGCTATTGTCAAGGGTGTACGCAGTCAATTGCTACCTCGTGCAGCAAATATTGTTAGACTTTTGACAGAATATTTCAGACGGTGCCTCTCACCAGCCCTGCGGATCAAGCTATATTCTAATGCACGGGCCTT
ACTTATTTCTATGGGAGTTGGAATGGCTTCATATCTTGCACCAGCTGTCATTTACAATGCGATAGCGGATTTGAAGGGTTCAAATTGTGGAGCTAGTTTAAACTCTCCAAATATAGCTGGGAAACCAAAATCATGCACAACGGGTGGTGGTGGCTTGGTGCAATCAAGCGCCCCACGAAAGAGGAAACACATCAGTGGGA
TATCAGGAGGCTATCCTGCATCCAGTGGGTTGGAAAGCGAGTTGGCTACAAATGATGCTGTGGTGTCAATTCCAGTACAAATAAGTGCGCTCAAAGCCCTTGAAGCATTACTTACTGTGGGTGGATCTTTGCGTTCTGATCGTTGGAGAGCAGAGGTGGATTTGGTTCTGATTACTGTGGCAATGAATGCTTCAACTAAT
TCGTCCATCCTGCGGTTTTGTGACGAGGAAAATGTCTCTTGTTTCGATGATGCAACATCTTTCACTACAGCAGATTTTCAGTTGGCAGCATATAAAGCTCTTTTGGCATCATTACTTTCGCCATGTTGTCACCGACCCCCTTACCTATCTCAAGGACTTGCATTATTTCGTAAAGGGAGGCAAGAATCTGGAACAGAACT
TGCTGAATTCTGTGCCCATGCACTTTTAGCCCTTGAACCACTCATTCATCCACGCAGCCTTCCATATGTTGGCACACCTGCAATGGCCACAACTATGGCAACAGGCAAGGGAATCCAAGGAAATTTGGCTTCGCATATACAAAAATCTAATGTCTTCTTTCCAAATCCAGATGGCGGTCCATCTGCCCCTGGAGCTTCTG
GTAGCATGTCTTTTGGATCGTCAATAAGAACTTTTCAGCATGGCTTTCAACTTGGAGAAGATGATCTTTGTCAAGATGATGAAATATATCTGGGCTGGCTTGGAAATGGCGAGGACTCAAATGCAGATCAGCAACACCTTTATGATAATACTGAAATGCCCATTGAGAGTCTTGTAGAGACACTTACAGAGAATGGAGGA
TTACAATGCTCTGCTCTTGATGAAATGACAAACATGGCTTCTATACAGTCTCCAGTTAATGATGAAATGCAGTCCATTCCCATTGTAGGTCTTAATAGTCCCTTCAGTTGTTCCAACATAGGAACTCTTCCAGTGGGGCCAGTTGAAACTGATAGGACTGACCCATTGAATATGTGTGAAGCTCAACAGCTTAAAGTGGA
TGAAACCCGAGATGCTAAGGTAGTAGCATCAATGAATGAAAATATTGGAATCACACAATGCGATCCGACAGCTACAGAGATAGGAAGCAATGGCAGGGAAACTGTTCTTGCTGAAGCTGCAACCAGTCATAGAGAAGCTCTTGTCACTGAAGCTGTAGAAACAACTGTAAATGTTCAAAATTCTAAGCAGGAAAGTGCAA
CTAGACTAACGGCAGATGACCAACTACTGGAAAACTTATCAGCCCGATTTCCTTTCAAACCCTTACCTGTTTCTTCCACTGCAGAATCAGATTCTGATGCAATCCCAGATATTGTTGATGGTGATCCAGACACGGAATAATTAAATTGCCTTTTTTAAGTTTCAACTCAAATGCTTTTATAACCAATGCATTGTAGTTCA
CCAATCTGTTGAAAGCCGGAACAAACACAGTACTGCACCAAACACTTGTGTAACTAATATTACAGTTCTTGATTTTTCTACTTGCTTTTTGCTTGCAAGTGAATTTCTCATATTTTGGAAAGTATTGCTGTCACAAAAATTGTATCAGATGAGGAAATTATGGCTGCCTTGTACACTGTATTAGCATATTTGGCAGCCGA
TGTAAATTGGGAAATTTTGTTTTCTTGGTTCTTACATGCAGATCGAAGATCACATGTCAAAAAGTCATGAGTTGTCTTTTAATGGGAAAATGTAATCTGAGTTTTGAGAATTTGTTTTACTGTTCACTGCAGTTTATTAAATTTGAGGCATCCATCTAGATGCAACAATCTGATCGTTCGAGGTTTTGGTAATTATAATT
GTACAATTTGCTTTCCATGTGAATGGAGAAAACACATCAATCTGCCACCCACAGTACGTCTTACAAATCTCCTCACCCAAACATCTAAATTAATCGAATTCAGTTTATTTTTTATTATTGGAAATGCAAATAAAATGGAGCAAC
Intron 2 GTATGGAACT ... AATTTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.93 | 17 | 1 | 8 |
| A2 | 13.21 | 23 | 3 | 4 |
| A3 | 10.71 | 25 | 1 | 5 |
| A4 | 15 | 17 | 4 | 2 |
| A5 | 13.51 | 16 | 2 | 3 |
| A6 | 13.04 | 10 | 1 | 2 |
| A7 | 12.9 | 27 | 2 | 6 |
| A8 | 25 | 3 | 0 | 2 |
| A9 | 3.7 | 13 | 0 | 1 |
| A10 | 14.29 | 15 | 0 | 5 |
>TRINITY_DN124368_c0_g1_i4 from sample A1 / Example spliced isoformATAGGTCTATACCTTAAACCCATTTGCAAAACTCTCCACATTTAAAGCTGCAAGCCTCTGTTGCGGCCATAGGATGATTTCATAGCTTGTCAATCTGTATATCGTATATTACTCATGGGCCAAGGCCTTCAAACTTTCAGAAGCCCCCATTAGCTTCAAAACAAGTTCTTAAAAAATTTACATTCTGATATATTTAACAG
TATTCATTATATACAGGCGGGAGTCTCTAAAAGTATCAATTTCTGGAGTCTTTCTGATAGATGGCGGAGCTGGAGGGATTTCAAAATATGTTCGACAGCAGTTTGAAGCCTCAGTTGCTGTATCAGGTCACGGCTTCTCATTTTCCGGACGAGAAGCAGCCATCCCCAGACCCTGCGCAGTTGTCTGCTGCAGCTTCCGT
CATTCGGAGGCATAAGCTGTTGTCGGAAGCGAAGCAAACCGATGGCTGGAAAGCTGCTGTTGATGCTTGGAACGAACGCATTGTCAATTATGTTTCCAGTAAAATGCCAGACAAGTGTTGGGCTGGAATATGCATGCTAGGAGTGACTTGCCAGGAGTGTAATCGCCAACGATTTTTGGAATCTTACTCCACTTGGTTTC
AAAAGCTTCTTGTACATCTAAAGCCTCCAACTGATTCAGCTTTTCTTAGAGTGGCTGCATGTGCTTCGCTTTCAGACCTTGTAACTAGGTTGGGAAGCTTCCCCAGTGTCAAGAAAGAAGGAACCTCTCTTGCTGGAAAACTTGTACAACCAGTTTTGCAACTACTTGGTCAAGATGATTCGGAAGATGTATTGAATGAC
GCAGCTGATCTATTTTGTGTTATGTTGAAGTGTTTTCCATCTTCTCTTCAACAACAATATGATAATGCAGAGTCTGTTCTGGCGTCCAAGATTTTGTATGGAAAATGCAGTATACAAATTTGCCAGAAATTTGCTCGGTGCTTGGCCTTTCTTCCCAGGGCTCGGAGTGATGGGGATAGCTGGTATTCAATGATGCAAAA
GGTGTTGCTTGCAATAAATGAACATTTAAATGATGCCTTCCAAGGCTTTGAGGATGGTAATATAGTAAGTGAAGCAGTTGCTCCTTTGCTTCCACCTGGAAAGGATCCGCCTCCTCCTTTGGGAGGTGAACATGTGGCAAAAGAAGCTGTAGAGAAAACGAGAAACAAGTTCTTCCAACTGCTTGTACCCAGAGTTTCTT
CACTGATGCACTGCTGTTGTGTGATGCTTACAAATCCTTATCCGGTGCAGGTGACCATTCCTCTTGGGCCACTGCTGGCTCTTATTTCAAGAATTCTCAACGTAAATGGTTCACCATATCAACAGCCTCTTGGTATCATTGGTCAGAAGCACACATTTCTATGCATCGAACTTCCTGCATTGCACTCATATGCTTTGGAT
TTACTTGCTGCTATTGTCAAGGGTGTACGCAGTCAATTGCTTCCTCGTGCAGCAAATATTGTTAGACTTTTGACAGAATATTTCAGACGGTGCCTCTCACCAGCCCTGCGGATCAAGCTATATTCTAATGCACGGGCCTTACTTATTTCTATGGGAGTTGGAATGGCTTCATATCTTGCACCAGCTGTCATTTACAATGC
GATAGCGGATTTGAAGGGTTCAAATTGTGGAGCTAGTTTGAACTCTCCAAATATAGCTGGGAAACCAAAATCATGCACAACGGGTGGTGGTGGCTTGGTGCAATCAAGCGCCCCACGAAAGAGGAAACACATCAGTGGGATATCAGGAGGCTATCCTGCATCCAGTGGGTTGGAAAGCGAGTTGGCTACAAATGATGCTG
TGGTGTCAATTCCAGTACAAATAAGTGCGCTCAAAGCCCTTGAAGCATTACTTACTGTGGGTGGATCTTTGCGTTCTGATCGTTGGAGAGCAGAGGTGGATTTGGTTCTGATTACTGTGGCAATGAATGCTTCAACTAATTCGTCCATCCTGCGGTTTTGTGACGAGGAAAATGTCTCTTGTTTCGAAGATGCAACATCT
TTCACTACAGCAGATTTTCAGTTGGCAGCATATAAAGCTCTTTTGGCATCATTACTTTCGCCATGTTGTCACCGACCCCCTTACCTATCTCAAGGACTTGCATTATTTCGTAAAGGGAGGCAAGAATCTGGAACAGAACTTGCTGAATTCTGTGCCCATGCACTTTTAGCCCTTGAACCACTCATTCATCCACGCAGCCT
TCCATATGTTGGCACACCTGCAATGGCCACAACTATGGCAACAGGCAAGGGAATCCAAGGAAATTTGGCTTCGCATATACAAAAATCTAATGTCTTCTTTCCAAATCCAGATGGCGGTCCATCTGCCCCTGGAGCTTCTGGTAGCATGTCTTTTGGATCGTCAATAAGAACTTTTCAGCATGGCTTTCAACTTGGAGAAG
ATGATCTTTGTCAAGATGATGAAATATATCTGGGCTGGCTTGGAAATGGCGAGGACTCAAATGCAGATCAGCAACACCTTTATGATAATACTGAAATGCCCATTGAGAGTCTTGTAGAGACACTTACAGAGAATGGAGGATTACAATGCTGTGCTCTTGATGAAATGACAAACATGGCTTCTATACAGTCTCCAGTTAAT
GATGAAATGCAGTCCATTCCCGTTGTAGGTCTTAATAGTCCCTTCAGTTGTTCCAACATAGGAACTCTTCCAGTGGGGCCAGTTGAAACTGATAGGACTGACCCATTGAATATGTGTGAAGCTCAACAGCTTAAAGTGGATGAAACCCGAGATGCTAAGGTAGTAGCATCAATGAATGAAAATATTGGAATCACACAATG
CGATCCGACAGCTACAGAGATAGGAAGCAATGGCAGGGAAACTGTTCTTGCTGAAGCTGCAACCAGTCATAGAGAAGCTCTTGTCACTGAAGCTGTAGAAACAACTGTAAATGTTCAAAATTCTAAGCAGGAGAGTGCAACTAGACTAACGGCAGATGACCAACTACTGGAAAACTTATCAGCCCGATTTCCTTTCAAAC
CCTTACCTGTTTCTTCCACTGCAGAATCAGATTCTGATGCAATCCCAGATATTGTTGATGGTGATCCAGACACGGAATAATTAAATTGCCTTTTTAAAGTTTCAACTCAAATGCTTTTATAACCAATGCATTGTAGTTCACCAATCTGTTGAAAGCCGGAACAAACACAGTACTGCACCAAACACTTGTGTAACTAATAT
TACAGTTCTTGATTTTTCTACTTGCTTTTTGCTTGCAAGTGAATTTCTCATATTTTGGAAAGTATTGCTGTCACAAAAATTGTATCAGATGAGGAAATTATGGCTGCCTTGTACACTGTATTAGCATATTTGGCAGCCGATGTAAATTGGGAAATTTTGTTTTCTTGGTTCTTACATGCAGATCAAAGAC
>TRINITY_DN124368_c0_g1_i5 from sample A1 / Example unspliced isoform:TTCATTGTTTTTAAATTCAATACTGTATGTATTAGGCTGTTTTTTCTATATTTTAGATTTCTGACGCCTGGATGTGTGTTAATAATAAGTATAGGTAGCATCGTGATAACTTTTGGGGATAGCTTGTTAACAATTTAATTTACATTCTTTACTGCCAGTTGATAAGATTGATGCAATCTTTAAAATTGTGCTGACTATTT
TATGTTTTGGCCGAACCTACAAAGAAATTTGCTCGGTGCTTGGCCTTTCTTCCCAGGGCTCGGAGTGATGGGGATAGCTGGTATTCAATGATGCAAAAGGTGTTGCTTGCAATAAATGAACATTTAAATGATGCCTTCCAAGGCTTTGAGGATGgtatggaactgaagcacatcaattaagtgtttgtctttgttaggat
acatgcaaatctgtactagtttgctgagatgctttacagtctcagtgcattgttgtcagttcaagtgaaaagttatgatttgttttgcttacaaattttgtagGTAATATAGTAAGTGAAGCAGTTGCTCCTTTGCTTCCACCTGGAAAGGATCCGCCTCCTCCTTTGGGAGGTGAACATGTGGCAAAAGAAGCTGTAGA
GAAAACGAGAAACAAGTTCTTCCAACTGCTTGTACCCAGAGTTTCTTCACTGATGCACTGCTGTTGTGTGATGCTTACAAATCCTTATCCGGTGCAGGTGACCATTCCTCTTGGGCCACTGCTGGCTCTTATTTCAAGAATTCTCAACGTAAATGGTTCACCATATCAACAGCCTCTTGGTATCATTGGTCAGAAGCACA
CATTTCTATGCATCGAACTTCCTGCATTGCACTCATATGCTTTGGATTTACTTGCTGCTATTGTCAAGGGTGTACGCAGTCAATTGCTTCCTCGTGCAGCAAATATTGTTAGACTTTTGACAGAATATTTCAGACGGTGCCTCTCACCAGCCCTGCGGATCAAGCTATATTCTAATGCACGGGCCTTACTTATTTCTATG
GGAGTTGGAATGGCTTCATATCTTGCACCAGCTGTCATTTACAATGCGATAGCGGATTTGAAGGGTTCAAATTGTGGAGCTAGTTTGAACTCTCCAAATATAGCTGGGAAACCAAAATCATGCACAACGGGTGGTGGTGGCTTGGTGCAATCAAGCGCCCCACGAAAGAGGAAACACATCAGTGGGATATCAGGAGGCTA
TCCTGCATCCAGTGGGTTGGAAAGCGAGTTGGCTACAAATGATGCTGTGGTGTCAATTCCAGTACAAATAAGTGCGCTCAAAGCCCTTGAAGCATTACTTACTGTGGGTGGATCTTTGCGTTCTGATCGTTGGAGAGCAGAGGTGGATTTGGTTCTGATTACTGTGGCAATGAATGCTTCAACTAATTCGTCCATCCTGC
GGTTTTGTGACGAGGAAAATGTCTCTTGTTTCGAAGATGCAACATCTTTCACTACAGCAGATTTTCAGTTGGCAGCATATAAAGCTCTTTTGGCATCATTACTTTCGCCATGTTGTCACCGACCCCCTTACCTATCTCAAGGACTTGCATTATTTCGTAAAGGGAGGCAAGAATCTGGAACAGAACTTGCTGAATTCTGT
GCCCATGCACTTTTAGCCCTTGAACCACTCATTCATCCACGCAGCCTTCCATATGTTGGCACACCTGCAATGGCCACAACTATGGCAACAGGCAAGGGAATCCAAGGAAATTTGGCTTCGCATATACAAAAATCTAATGTCTTCTTTCCAAATCCAGATGGCGGTCCATCTGCCCCTGGAGCTTCTGGTAGCATGTCTTT
TGGATCGTCAATAAGAACTTTTCAGCATGGCTTTCAACTTGGAGAAGATGATCTTTGTCAAGATGATGAAATATATCTGGGCTGGCTTGGAAATGGCGAGGACTCAAATGCAGATCAGCAACACCTTTATGATAATACTGAAATGCCCATTGAGAGTCTTGTAGAGACACTTACAGAGAATGGAGGATTACAATGCTGTG
CTCTTGATGAAATGACAAACATGGCTTCTATACAGTCTCCAGTTAATGATGAAATGCAGTCCATTCCCGTTGTAGGTCTTAATAGTCCCTTCAGTTGTTCCAACATAGGAACTCTTCCAGTGGGGCCAGTTGAAACTGATAGGACTGACCCATTGAATATGTGTGAAGCTCAACAGCTTAAAGTGGATGAAACCCGAGAT
GCTAAGGTAGTAGCATCAATGAATGAAAATATTGGAATCACACAATGCGATCCGACAGCTACAGAGATAGGAAGCAATGGCAGGGAAACTGTTCTTGCTGAAGCTGCAACCAGTCATAGAGAAGCTCTTGTCACTGAAGCTGTAGAAACAACTGTAAATGTTCAAAATTCTAAGCAGGAGAGTGCAACTAGACTAACGGC
AGATGACCAACTACTGGAAAACTTATCAGCCCGATTTCCTTTCAAACCCTTACCTGTTTCTTCCACTGCAGAATCAGATTCTGATGCAATCCCAGATATTGTTGATGGTGATCCAGACACGGAATAATTAAATTGCCTTTTTAAAGTTTCAACTCAAATGCTTTTATAACCAATGCATTGTAGTTCACCAATCTGTTGAA
AGCCGGAACAAACACAGTACTGCACCAAACACTTGTGTAACTAATATTACAGTTCTTGATTTTTCTACTTGCTTTTTGCTTGCAAGTGAATTTCTCATATTTTGGAAAGTATTGCTGTCACAAAAATTGTATCAGATGAGGAAATTATGGCTGCCTTGTACACTGTATTAGCATATTTGGCAGCCGATGTAAATTGGGAA
ATTTTGTTTTCTTGGTTCTTACATGCAGATCAAAGAC
Intron 3 GTCTATACCT ... TTTCTGATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 77.42 | 7 | 2 | 24 |
| A2 | 83.33 | 5 | 2 | 25 |
| A3 | 78.79 | 7 | 0 | 26 |
| A4 | 91.67 | 1 | 4 | 11 |
| A5 | 58.33 | 10 | 2 | 14 |
| A6 | 75 | 2 | 1 | 6 |
| A7 | 92.31 | 1 | 4 | 12 |
| A8 | 66.67 | 3 | 0 | 6 |
| A9 | 76.92 | 3 | 4 | 10 |
| A10 | 65.22 | 8 | 0 | 15 |
>TRINITY_DN44305_c1_g2_i4 from sample A9 / Example spliced isoformGGTCAAATAGACTATACTTGTAACGCCCGAGTTACCCTGAGAAATCCGTCAACAGGCCGTCACTTCCTCAAAATAGATGGCGGAGCTGGAGGGATTTCAAAATATGTTCGACAGCAGTTTGAAGCCTCAGTTGCTGTATCAGGTCACGGCTTCTCATTTTCCGGACGAGAAGCAGCCATCCCCAGACCCTGCGCAGTTGT
CTGCTGCGGCTTCCGTCATTCGGAGGCATAAGCTGTTGTCGGAAGCGAAGCAAACCGATGGCTGGAAAGCTGCTGTTGATGCTTGGAACGAACGCATTGTCAATTATGTTTCCAGTAAAATGCCAGACAAGTGTTGGGCTGGAATATGCATGCTAGGAGTGACTTGTCAGGAGTGTAATCGCCAACGATTTTTGGAATCT
TACTCCACTTGGTTTCAAAAGCTTCTTGTACATCTAAAGCCTCCAACTGATTCAGCTTTTCTTAGAGTGGCTGCATGTGCTTCGCTTTCAGACCTTTTAACTAGGTTGGGAAGCTTCCCCAGTGTCAAGAAAGAAGGAACCTCTCTTGCTGGAAAACTTGTACAACCAGTTTTGCAACTACTTGCTCAAGATGATTCGGA
AGATGTATTGAATGATGCAGCTGATCTATTTTGTGTTATGTTGAAGTGTTTTCCATCTTCTCTTCAACAACAATATGATAATGCAGAGTCTGTTCTGGCGTCCAAGATTCTGTATGGAAAATGCAGTATACAAATTTGCCAGAAATTTGCTCGGTGCTTGGCCTTTCTTCCCAGGGCTCGGAGTGATGGGGATAGCTGGT
ATTCAATGATGCAAAAGGTGTTGCTTGCAATAAATGAACATTTAAATGATGCCTTCCAAGGCTTTGAGGATGGTAATATAGTAAGTGAAGCAGTTGCTCCTTTGCTTCCACCTGGAAAGGATCCGCCTCCTCCTTTGGGAGGTGAACATGTGGCAAAAGAAGCTGTAGAGAAAACGAGAAACAAGTTCTTCCAACTGCTT
GTACCCAGAGTTTCTTCACTGATGCACTGCTGTTGTGTGATGCTTACAAATCCTTATCCGGTGCAGGTGACCATTCCTCTTGGGCCACTGCTGGCTCTTATTTCAAGAATTCTCAATGTAAATGGTTCACCATATCAACAGCCTCTTGGTATCATTGGTCAGAAGCACACATTTCTATGCATCGAACTTCCTGCATTGCA
CTCATATGCTTTGGATTTACTTGCTGCTATTGTCAAGGGTGTACGCAGTCAATTGCTACCTCGTGCAGCAAATATTGTTAGACTTTTGACAGAATATTTCAGACGGTGCCTCTCACCAGCCCTGCGGATCAAGCTATATTCTAATGCACGGGCCTTACTTATTTCTATGGGAGTTGGAATGGCTTCATATCTTGCACCAG
CTGTCATTTACAATGCGATAGCGGATTTGAAGGGTTCAAATTGTGGAGCTAGTTTAAACTCTCCAAATATAGCTGGGAAACCAAAATCATGCACAACGGGTGGTGGTGGCTTGGTGCAATCAAGCGCCCCACGAAAGAGGAAACACATCAGTGGGATATCAGGAGGCTATCCTGCATCCAGTGGGTTGGAAAGCGAGTTG
GCTACAAATGATGCTGTGGTGTCAATTCCAGTACAAATAAGTGCGCTCAAAGCCCTTGAAGCATTACTTACTGTGGGTGGATCTTTGCGTTCTGATCGTTGGAGAGCAGAGGTGGATTTGGTTCTGATTACTGTGGCAATGAATGCTTCAACTAATTCGTCCATCCTGCGGTTTTGTGACGAGGAAAATGTCTCTTGTTT
CGATGATGCAACATCTTTCACTACAGCAGATTTTCAGTTGGCAGCATATAAAGCTCTTTTGGCATCATTACTTTCGCCATGTTGTCACCGACCCCCTTACCTATCTCAAGGACTTGCATTATTTCGTAAAGGGAGGCAAGAATCTGGAACAGAACTTGCTGAATTCTGTGCCCATGCACTTTTAGCCCTTGAACCACTCA
TTCATCCACGCAGCCTTCCATATGTTGGCACACCTGCAATGGCCACAACTATGGCAACAGGCAAGGGAATCCAAGGAAATTTGGCTTCGCATATACAAAAATCTAATGTCTTCTTTCCAAATCCAGATGGCGGTCCATCTGCCCCTGGAGCTTCTGGTAGCATGTCTTTTGGATCGTCAATAAGAACTTTTCAGCATGGC
TTTCAACTTGGAGAAGATGATCTTTGTCAAGATGATGAAATATATCTGGGCTGGCTTGGAAATGGCGAGGACTCAAATGCAGATCAGCAACACCTTTATGATAATACTGAAATGCCCATTGAGAGTCTTGTAGAGACACTTACAGAGAATGGAGGATTACAATGCTCTGCTCTTGATGAAATGACAAACATGGCTTCTAT
ACAGTCTCCAGTTAATGATGAAATGCAGTCCATTCCCATTGTAGGTCTTAATAGTCCCTTCAGTTGTTCCAACATAGGAACTCTTCCAGTGGGGCCAGTTGAAACTGATAGGACTGACCCATTGAATATGTGTGAAGCTCAACAGCTTAAAGTGGATGAAACCCGAGATGCTAAGGTAGTAGCATCAATGAATGAAAATA
TTGGAATCACACAATGCGATCCGACAGCTACAGAGATAGGAAGCAATGGCAGGGAAACTGTTCTTGCTGAAGCTGCAACCAGTCATAGAGAAGCTCTTGTCACTGAAGCTGTAGAAACAACTGTAAATGTTCAAAATTCTAAGCAGGAAAGTGCAACTAGACTAACGGCAGATGACCAACTACTGGAAAACTTATCAGCC
CGATTTCCTTTCAAACCCTTACCTGTTTCTTCCACTGCAGAATCAGATTCTGATGCAATCCCAGATATTGTTGATGGTGATCCAGACACGGAATAATTAAATTGCCTTTTTTAAGTTTCAACTCAAATGCTTTTATAACCAATGCATTGTAGTTCACCAATCTGTTGAAAGCCGGAACAAACACAGTACTGCACCAAACA
CTTGTGTAACTAATATTACAGTTCTTGATTTTTCTACTTGCTTTTTGCTTGCAAGTGAATTTCTCATATTTTGGAAAGTATTGCTGTCACAAAAATTGTATCAGATGAGGAAATTATGGCTGCCTTGTACACTGTATTAGCATATTTGGCAGCCGATGTAAATTGGGAAATTTTGTTTTCTTGGTTCTTACATGCAGATC
GAAGATCACATGTCAAAAAGTCATGAGTTGTCTTTTAATGGGAAAATGTAATCTGAGTTTTGAGAATTTGTTTTACTGTTCACTGCAGTTTATTAAATTTGAGGCATCCATCTAGATGCAACAATCTGATCGTTCGAGGTTTTGGTAATTATAATTGTACAATTTGCTTTCCATGTGAATGGAGAAAACACATCAATCTG
CCACCCACAGTACGTCTTACAAATCTCCTCACCCAAACATCTAAATTAATCGAATTCAGTTTATTTTTTATTATTGGAAATGCAAATAAAATGGAGCAAC
>TRINITY_DN44305_c1_g2_i5 from sample A9 / Example unspliced isoform:GGTCAAATAGACTATACTTGTAACGCCCGAGTTACCCTGAGAAATCCGTCAACAGGCCGTCACTTCCTCAAAATAGgtctataccttaaacccatttgcaaaactctccacatttaaagctgcaagcctctgttgcggccataggatgatttcatagcttttcaatctgtatatcgtatattactcatgggccacggcct
tcaaactttcagaagtccccattagcttcaaaacaagttcttaaaaaagtttacattctgatatatttaacagtattcattatatacaagcgggagtctctaaaagtatcaatttctggagtctttctgatagATGGCGGAGCTGGAGGGATTTCAAAATATGTTCGACAGCAGTTTGAAGCCTCAGTTGCTGTATCAGG
TCACGGCTTCTCATTTTCCGGACGAGAAGCAGCCATCCCCAGACCCTGCGCAGTTGTCTGCTGCGGCTTCCGTCATTCGGAGGCATAAGCTGTTGTCGGAAGCGAAGCAAACCGATGGCTGGAAAGCTGCTGTTGATGCTTGGAACGAACGCATTGTCAATTATGTTTCCAGTAAAATGCCAGACAAGTGTTGGGCTGGA
ATATGCATGCTAGGAGTGACTTGTCAGGAGTGTAATCGCCAACGATTTTTGGAATCTTACTCCACTTGGTTTCAAAAGCTTCTTGTACATCTAAAGCCTCCAACTGATTCAGCTTTTCTTAGAGTGGCTGCATGTGCTTCGCTTTCAGACCTTTTAACTAGGTTGGGAAGCTTCCCCAGTGTCAAGAAAGAAGGAACCTC
TCTTGCTGGAAAACTTGTACAACCAGTTTTGCAACTACTTGCTCAAGATGATTCGGAAGATGTATTGAATGATGCAGCTGATCTATTTTGTGTTATGTTGAAGTGTTTTCCATCTTCTCTTCAACAACAATATGATAATGCAGAGTCTGTTCTGGCGTCCAAGATTCTGTATGGAAAATGCAGTATACAAATTTGCCAGA
AATTTGCTCGGTGCTTGGCCTTTCTTCCCAGGGCTCGGAGTGATGGGGATAGCTGGTATTCAATGATGCAAAAGGTGTTGCTTGCAATAAATGAACATTTAAATGATGCCTTCCAAGGCTTTGAGGATGGTAATATAGTAAGTGAAGCAGTTGCTCCTTTGCTTCCACCTGGAAAGGATCCGCCTCCTCCTTTGGGAGGT
GAACATGTGGCAAAAGAAGCTGTAGAGAAAACGAGAAACAAGTTCTTCCAACTGCTTGTACCCAGAGTTTCTTCACTGATGCACTGCTGTTGTGTGATGCTTACAAATCCTTATCCGGTGCAGGTGACCATTCCTCTTGGGCCACTGCTGGCTCTTATTTCAAGAATTCTCAATGTAAATGGTTCACCATATCAACAGCC
TCTTGGTATCATTGGTCAGAAGCACACATTTCTATGCATCGAACTTCCTGCATTGCACTCATATGCTTTGGATTTACTTGCTGCTATTGTCAAGGGTGTACGCAGTCAATTGCTACCTCGTGCAGCAAATATTGTTAGACTTTTGACAGAATATTTCAGACGGTGCCTCTCACCAGCCCTGCGGATCAAGCTATATTCTA
ATGCACGGGCCTTACTTATTTCTATGGGAGTTGGAATGGCTTCATATCTTGCACCAGCTGTCATTTACAATGCGATAGCGGATTTGAAGGGTTCAAATTGTGGAGCTAGTTTAAACTCTCCAAATATAGCTGGGAAACCAAAATCATGCACAACGGGTGGTGGTGGCTTGGTGCAATCAAGCGCCCCACGAAAGAGGAAA
CACATCAGTGGGATATCAGGAGGCTATCCTGCATCCAGTGGGTTGGAAAGCGAGTTGGCTACAAATGATGCTGTGGTGTCAATTCCAGTACAAATAAGTGCGCTCAAAGCCCTTGAAGCATTACTTACTGTGGGTGGATCTTTGCGTTCTGATCGTTGGAGAGCAGAGGTGGATTTGGTTCTGATTACTGTGGCAATGAA
TGCTTCAACTAATTCGTCCATCCTGCGGTTTTGTGACGAGGAAAATGTCTCTTGTTTCGATGATGCAACATCTTTCACTACAGCAGATTTTCAGTTGGCAGCATATAAAGCTCTTTTGGCATCATTACTTTCGCCATGTTGTCACCGACCCCCTTACCTATCTCAAGGACTTGCATTATTTCGTAAAGGGAGGCAAGAAT
CTGGAACAGAACTTGCTGAATTCTGTGCCCATGCACTTTTAGCCCTTGAACCACTCATTCATCCACGCAGCCTTCCATATGTTGGCACACCTGCAATGGCCACAACTATGGCAACAGGCAAGGGAATCCAAGGAAATTTGGCTTCGCATATACAAAAATCTAATGTCTTCTTTCCAAATCCAGATGGCGGTCCATCTGCC
CCTGGAGCTTCTGGTAGCATGTCTTTTGGATCGTCAATAAGAACTTTTCAGCATGGCTTTCAACTTGGAGAAGATGATCTTTGTCAAGATGATGAAATATATCTGGGCTGGCTTGGAAATGGCGAGGACTCAAATGCAGATCAGCAACACCTTTATGATAATACTGAAATGCCCATTGAGAGTCTTGTAGAGACACTTAC
AGAGAATGGAGGATTACAATGCTCTGCTCTTGATGAAATGACAAACATGGCTTCTATACAGTCTCCAGTTAATGATGAAATGCAGTCCATTCCCATTGTAGGTCTTAATAGTCCCTTCAGTTGTTCCAACATAGGAACTCTTCCAGTGGGGCCAGTTGAAACTGATAGGACTGACCCATTGAATATGTGTGAAGCTCAAC
AGCTTAAAGTGGATGAAACCCGAGATGCTAAGGTAGTAGCATCAATGAATGAAAATATTGGAATCACACAATGCGATCCGACAGCTACAGAGATAGGAAGCAATGGCAGGGAAACTGTTCTTGCTGAAGCTGCAACCAGTCATAGAGAAGCTCTTGTCACTGAAGCTGTAGAAACAACTGTAAATGTTCAAAATTCTAAG
CAGGAAAGTGCAACTAGACTAACGGCAGATGACCAACTACTGGAAAACTTATCAGCCCGATTTCCTTTCAAACCCTTACCTGTTTCTTCCACTGCAGAATCAGATTCTGATGCAATCCCAGATATTGTTGATGGTGATCCAGACACGGAATAATTAAATTGCCTTTTTTAAGTTTCAACTCAAATGCTTTTATAACCAAT
GCATTGTAGTTCACCAATCTGTTGAAAGCCGGAACAAACACAGTACTGCACCAAACACTTGTGTAACTAATATTACAGTTCTTGATTTTTCTACTTGCTTTTTGCTTGCAAGTGAATTTCTCATATTTTGGAAAGTATTGCTGTCACAAAAATTGTATCAGATGAGGAAATTATGGCTGCCTTGTACACTGTATTAGCAT
ATTTGGCAGCCGATGTAAATTGGGAAATTTTGTTTTCTTGGTTCTTACATGCAGATCGAAGATCACATGTCAAAAAGTCATGAGTTGTCTTTTAATGGGAAAATGTAATCTGAGTTTTGAGAATTTGTTTTACTGTTCACTGCAGTTTATTAAATTTGAGGCATCCATCTAGATGCAACAATCTGATCGTTCGAGGTTTT
GGTAATTATAATTGTACAATTTGCTTTCCATGTGAATGGAGAAAACACATCAATCTGCCACCCACAGTACGTCTTACAAATCTCCTCACCCAAACATCTAAATTAATCGAATTCAGTTTATTTTTTATTATTGGAAATGCAAATAAAATGGAGCAAC