sp|Q6YSY5|MTS1_ORYSJ ----> O-methyltransferase 1, chloroplastic

Intron 1 GTAAGGAGAA ... TCAATGCAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	68.42	3	4	9
A2	50.18	15.2	16	14.5
A3	48.09	12	14	8.2
A4	40.16	16.8	6.8	15.8
A5	71.43	1	1	4
A6	38.1	14	5	12.2
A7	47.37	20	14	22
A8	31.07	17.8	6.8	9.2
A9	44.25	47.8	31.6	44.3
A10	31.43	24	13	9

>TRINITY_DN111979_c2_g1_i3 from sample A2 / Example spliced isoform

CGCATATGAACTTCTAGTGCGTTCTGTCCTTACACGGTATCGAATTTCTGCGCTGATTGAACACTCTCTAATATGTCCATATTCTGAAAGTGAGAGAGTCATTTGGGAGTGTACTAGATTGACGCCCATCTTTGATGCAAAGGAGGGGGTCAACAGGATGCCGAAATGCAAAAGCGGGCTCTGCAAGCAGCCACCCATGC
AGCTGCCTTGCGCTTTCTAGAGTCCCATCGTTCAGAGCCACTGTTTCATGATCCATATGCTGGATGCTTTGTTGAACTGGAGCTTTATAAGGAAATCTCTTTAGATATTCATAATGTTTCGACAAGCTCTTTGAACTATTATTGTCTTGCAACAAGATTTATTGATGATAAACTGCTTGGTAATGTAAATATGCATAGCA
GCATACGACAGATTGTCTTGTTGACAGATGGCATGGATACTCGGCCTTTCAGGTTGAAATGGCCACCTATGACCATGCTTTTTGACATATCCTTTGAGCCTGTCTTTGAGATGGCATCCAAGAAATTGAAAGAAGTTGGAGTGAAGACATCAAGAAACTCTGTATTCCGACATATTCCTGATGAATCGTCAGACATACAA
GAGAAGCTAAAGGGCATGGGTTATAGAGGTGACAGGCTCAGTATCTGGGCAATCCAGGGTTTTCATCCAATGACTTCAGACAGATTTGAAGAGATCGTTTATCAAATTAGCTGTCTAGCTATGAAAGACAGTCAACTTGTGGGAGAGATACCCCTTACTATTATCAATGCAGATGCTGGTGCAGAGGACCATGCTAGAAG
ATGGATTGAGAAGGTTCTCAATCGCAATGGTTTTTTGGTGGATTTCATTTCATATGAAGATGTTGCAAGGGATGTTTGCCAGAAACACTTGATCAATGGTGGTCAGCATCTTGTGACAGTTGATGGTGGAGAATTGAGAAGTGTTCTTTTTGTAGCTCAACAACAGCGCCTTTCTGATGATCAGCTAGAGTTCGTAAGAA
GAGAGATGGAGCTTGCAGAAGAAGCAGGAGATGAAGATGGTTTTGAAGACATGTAATAGGGAAAAACACTGATTTCCAAGTGCAGGAGTTAAGGGAGAAGATGAATCTTGAAGGAAGAAACAGAGACGAGGATCTTTTATAACGTATAGTAGGGAAATAGGAGCTTATTAAAGAACCCCTACTCATGTTGAGTGATTCTG
TATTCTCCAAATGTTGCAGTATGGGTTCCTGGCTCTACTTCCATCTTGCAAGTGGAGCAATTCCATTAATGCTTAACATAGGATGTCTTCAGAAATTTGACATTTAGCATTTTACTTTCATAAAGCAAAACAAACATGAACTCGTATATCCCATAGTTGAGATTTATAGTGAGATACAAATACTTTTCTACTGACTACAT
TGACTATGCCATAATGTTCAAAGTGAGCATGGGCAAAGAGTGCTATCCCAGACAATAATTAATTTCCACCAAAA

>TRINITY_DN111979_c2_g1_i4 from sample A2 / Example unspliced isoform:

CGCATATGAACTTCTAGTGCGTTCTGTCCTTACACGGTATCGAATTTCTGCGCTGATTGAACACTCTCTAATATGTCCATATTCTGAAAGTGAGAGAGTCATTTGGGAGTGTACTAGATTGACGCCCATCTTTGgtaaggagaattgaatatgacaagcttatttctcgctaccaaaaccttgaactttccatggaattt
taccaaacaatgtggaatttatgtgaaatcatctaaattcagtttgagattcaatgcaagATGCAAAGGAGGGGGTCAACAGGATGCCGAAATGCAAAAGCGGGCTCTGCAAGCAGCCACCCATGCAGCTGCCTTGCGCTTTCTAGAGTCCCATCGTTCAGAGCCACTGTTTCATGATCCATATGCTGGATGCTTTGTTG
AACTGGAGCTTTATAAGGAAATCTCTTTAGATATTCATAATGTTTCGACAAGCTCTTTGAACTATTATTGTCTTGCAACAAGATTTATTGATGATAAACTGCTTGGTAATGTAAATATGCATAGCAGCATACGACAGAT

Intron 2 GTGTTTATTG ... GTGACTCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	25	18	6	0
A2	17.5	33	7	0
A3	33.9	39	20	0
A4	18.52	44	10	0
A5	13.33	13	2	0
A6	29.89	61	26	0
A7	32.69	70	34	0
A8	21.31	48	13	0
A9	34.78	45	24	2
A10	35.48	40	22	0

>TRINITY_DN41772_c1_g5_i7 from sample A9 / Example spliced isoform

CGCATATGAACTTCTAGTGCGTTCTGTCCTTACACGGTATCGAATTTCTGCGCTGATTGAACACTCTCTAATATGTCCATATTCTGAAAGTGAGAGAGTCATTTGGGAGTGTACTAGATTGACGCCCATCTTTGGTAAGGAGAATTGAATATGACAAGCTTATTTCTCGCTACCAAAACCTTGAACTTTCCATGGAATTT
TACCAAACAATGTGGAATTTATGTGAAATCATCTAAATTCAGTTTGAGATTCAATGCAAGATGCAAAGGAGGGGGTCAACAGGATGCCGAAATGCAAAAGCGGGCTCTGCAAGCAGCCACCCATGCAGCTGCCTTGCGCTTTCTAGAGTCCCATCGTTCAGAGCCACTGTTTCATGATCCATATGCTGGATGCTTTGTTG
AACTGGAGCTTTATAAGGAAATCTCTTTAGATATTCATAATGTTTCGACAAGCTCTTTGAACTATTATTGTCTTGCAACAAGATTTATTGATGATAAACTGCTTGGTAATGTAAATATGCATAGCAGCATACGACAGATTGTCTTGTTGACAGATGGCATGGATACTCGGCCTTTCAGGTTGAAATGGCCACCTATGACC
ATGCTTTTTGACATATCCTTTGAGCCTGTCTTTGAGATGGCATCCAAGAAATTGAAAGAAGTTGGAGTGAAGACATCAAGAAACTCTGTATTCCGACATATTCCTGATGAATCGTCAGACATACAAGAGAAGCTAAAGGGCATGGGTTATAGAGGTGACAGGCTCAGTATCTGGGCAATCCAGGGTTTTCATCCAATGAC
TTCAGACAGATTTGAAGAGATCGTTTATCAAATTAGCTGTCTAGCTATGAAAGACAGTCAACTTGTGGGAGAGATACCCCTTACTATTATCAATGCAGATGCTGGTGCAGAGGACCATGCTAGAAGATGGATTGAGAAGGTTCTCAATCGCAATGGTTTTTTGGTGGATTTCATTTCATATGAAGATGTTGCAAGGGATG
TTTGCCAGAAACACTTGATCAATGGTGGTCAGCATCTTGTGACAGTTGATGGTGGAGAATTGAGAAGTGTTCTTTTTGTAGCTCAACAACAGCGCCTTTCTGATGATCAGGAATGACCTCTTCATTTCTGTTACCATATTCTTATGCCTGACATTTGTGTGTGTGTGTGTGTGTGTGAGGGAAGGTGTTTGACCTCCCAG
AGTTGTTTTCAATCTGTCAACAAAGGGGCTTAACACATGT

>TRINITY_DN41772_c1_g5_i3 from sample A9 / Example unspliced isoform:

CGCATATGAACTTCTAGTGCGTTCTGTCCTTACACGGTATCGAATTTCTGCGCTGATTGAACACTCTCTAATATGTCCATATTCTGAAAGTGAGAGAGTCATTTGGGAGTGTACTAGATTGACGCCCATCTTTGGTAAGGAGAATTGAATATGACAAGCTTATTTCTCGCTACCAAAACCTTGAACTTTCCATGGAATTT
TACCAAACAATGTGGAATTTATGTGAAATCATCTAAATTCAGTTTGAGATTCAATGCAAGATGCAAAGGAGGGGGTCAACAGGATGCCGAAATGCAAAAGCGGGCTCTGCAAGCAGCCACCCATGCAGCTGCCTTGCGCTTTCTAGAGTCCCATCGTTCAGAGCCACTGTTTCATGATCCATATGCTGGATGCTTTGTTG
AACTGGAGCTTTATAAGGAAATCTCTTTAGATATTCATAATGTTTCGACAAGCTCTTTGAACTATTATTGTCTTGCAACAAGATTTATTGATGATAAACTGCTTGGTAATGTAAATATGCATAGCAGCATACGACAGATTGTCTTGTTGACAGATGGCATGGATACTCGGCCTTTCAGGTTGAAATGGCCACCTATGACC
ATGCTTTTTGACATATCCTTTGAGCCTGTCTTTGAGATGGCATCCAAGAAATTGAAAGAAGTTGGAGTGAAGACATCAAGAAACTCTGTATTCCGACATATTCCTGATGAATCGTCAGACATACAAGAGAAGCTAAAGGGCATGGGTTATAGAGGTGACAGGCTCAGTATCTGGGCAATCCAGGGTTTTCATCCAATGAC
TTCAGACAGATTTGAAGAGATCGTTTATCAAATTAGCTGTCTAGCTATGAAAGACAGTCAACTTGTGGGAGAGATACCCCTTACTATTATCAATGCAGATGCTGGTGCAGAGgtgtttattgaatttttgttgttacaaacttacaacctatgctattggtattaattgggcagatggtaactgtccaaacatgttattt
gtgactccagGACCATGCTAGAAGATG

Intron 3 GTAAGGAGAA ... CTAAATTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	61.63	4	4	8
A2	52.33	14.5	15.5	16.3
A3	60.1	7.8	14	9.3
A4	45.68	11.7	6.9	12.7
A5	100	0	1	4
A6	34.34	14.7	5	10.3
A7	50.49	14.1	13.8	15
A8	37.39	12.8	6.9	8.3
A9	56.17	25	31.7	32.3
A10	37.85	18.9	13	10

>TRINITY_DN111979_c2_g1_i6 from sample A2 / Example spliced isoform

CGCATATGAACTTCTAGTGCGTTCTGTCCTTACACGGTATCGAATTTCTGCGCTGATTGAACACTCTCTAATATGTCCATATTCTGAAAGTGAGAGAGTCATTTGGGAGTGTACTAGATTGACGCCCATCTTTGTTTGAGATTCAATGCAAGATGCAAAGGAGGGGGTCAACAGGATGCCGAAATGCAAAAGCGGGCTCT
GCAAGCAGCCACCCATGCAGCTGCCTTGCGCTTTCTAGAGTCCCATCGTTCAGAGCCACTGTTTCATGATCCATATGCTGGATGCTTTGTTGAACTGGAGCTTTATAAGGAAATCTCTTTAGATATTCATAATGTTTCGACAAGCTCTTTGAACTATTATTGTCTTGCAACAAGATTTATTGATGATAAACTGCTTGGTA
ATGTAAATATGCATAGCAGCATACGACAGAT

>TRINITY_DN111979_c2_g1_i4 from sample A2 / Example unspliced isoform:

CGCATATGAACTTCTAGTGCGTTCTGTCCTTACACGGTATCGAATTTCTGCGCTGATTGAACACTCTCTAATATGTCCATATTCTGAAAGTGAGAGAGTCATTTGGGAGTGTACTAGATTGACGCCCATCTTTGgtaaggagaattgaatatgacaagcttatttctcgctaccaaaaccttgaactttccatggaattt
taccaaacaatgtggaatttatgtgaaatcatctaaattcagTTTGAGATTCAATGCAAGATGCAAAGGAGGGGGTCAACAGGATGCCGAAATGCAAAAGCGGGCTCTGCAAGCAGCCACCCATGCAGCTGCCTTGCGCTTTCTAGAGTCCCATCGTTCAGAGCCACTGTTTCATGATCCATATGCTGGATGCTTTGTTG
AACTGGAGCTTTATAAGGAAATCTCTTTAGATATTCATAATGTTTCGACAAGCTCTTTGAACTATTATTGTCTTGCAACAAGATTTATTGATGATAAACTGCTTGGTAATGTAAATATGCATAGCAGCATACGACAGAT

Intron 4 GTAAGGAGAA ... AGATGCAAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	61.9	4	4	9
A2	50.38	14.8	15.1	14.7
A3	48.3	13.2	14	10.7
A4	41.21	15.8	6.8	15.3
A5	71.43	1	1	4
A6	40.43	13	5	12.7
A7	44.34	24.2	13.6	25
A8	36.49	17.8	6.8	13.7
A9	43.16	46.3	31.3	39
A10	33.93	24.3	13	12

>TRINITY_DN40176_c2_g1_i6 from sample A6 / Example spliced isoform

CGGTATCGAATTTCTGCGCTGATTGAACACTCTCTAATATGTCCATATTCTGAAAGTGAGAGAGTCATTTGGGAGTGTACTAGATTGACGCCCATCTTTGGAGGGGGTCAACAGGATGCCGAAATGCAAAAGCGGGCTCTACAAGCAGCCACCCATGCAGCTGCCTTGCGCTTCCTAGAGTCCCATCGTTCAGAGCCACT
GTTTCATGATCCATATGCTGGATGCTTTGTTGAACTGGAGCTTTATAAGGAAATCTCTTTAGATATTCATAATGTTTCGACAAGCTCTTTGAACTATTATTGTCTTGCAACAAGATTTATTGATGATAAACTGCTTGGTAATGTAAATATGCATAGCAGCATACGACAGATTGTCTTGTTGACAGATGGCATGGATACTC
GGCCTTTCAGGTTGAAATGGCCACCTATGACCATGCTTTTTGACATATCCTTTGAGCCTGTCTTTGAGATGGCATCCAAGAAATTGAAAGAAGTTGGAGTGAAGACATCAAGAAACTCTGTATTCCGACATATTCCTGATGAATCGTCAGACATACAAGAGAAGCTAAAGGGCATGGGTTATAGAGGTGACAGGCTCAGT
ATCTGGGCAATCCAGGGTTTTCATCCAATGACTTCAGACAGATTTGAAGAGATCGTTTATCAAATTAGCTGTCTAGCTATGAAAGACAGTCAACTTGTGGGAGAGATACCCCTTACTATTATCAATGCAGATGCTGGTGCAGAGGACCATGCTAGAAGATGGATTGAGAAGGTTCTCAATCGCAATGGTTTTTTGGTGGA
TTTCATTTCATATGAAGATGTTGCAAGGGATGTTTGCCAGAAACACTTGATCAATGGTGGTCAGCATCTTGTGACAGTTGATGGTGGAGAATTGAGAAGTGTTCTTTTTGTAGCTCAACAACAGCGCCTTTCTGATGATCAGCTAGAGTTCGTAAGAAGAGAGATGGAGCTTGCAGAAGAAGCAGGAGATGAAGATGGTT
TTGAAGACATGTAATAGGGAAAAACACTGATTTCCAAGTGCAGGAGTTAAGGGAGAAGATGAATCTTGAAGGAAGAAACAGAGACGAGGATCTTTTATAACGTATAGTAGGGAAATAGGAGCTTATTAAAGAACCCCTACTCATGTTGAGTGATTCTGTATTCTCCAAATGTTGCAGTATGGGTTCCCCGCTCTACTTCC
ATCTTGCAAGTGGAGCAATTCCATTAATGCTTACCATAGGATGTCTTCAGAAATTTGACATTTAGCATTTTACTTTCATAAAGCAAAACAAACATGAACTCGTATATCCCATAGTTGAGATTTATAGTGAGATACAAATACTTTTCTACTGACTACATTGACTATGCCATAATGTTCAAAGTGAGCATGGGCAAAGAGTG
CTATCCCAGACAATAATTAATTTCCACCAAAAGGCAAATCTCTGAGAGTTAAAAGTTTTGCTGTCTATATTTCTGGGACTTTAGTGACTAAATTGAGCTGATTAAAGTTGTTTTGCAATTAAAAATATGAAAAACTGCTACATCTATACCTGC

>TRINITY_DN40176_c2_g1_i9 from sample A6 / Example unspliced isoform:

CGGTATCGAATTTCTGCGCTGATTGAACACTCTCTAATATGTCCATATTCTGAAAGTGAGAGAGTCATTTGGGAGTGTACTAGATTGACGCCCATCTTTGgtaaggagaattgaatatgacaagcttatttctcgctaccaaaaccttgaactttccatggaattttaccaaacaatgtggaatttatgtgaaatcatct
aaattcagtttgagattcaatgcaagatgcaaagGAGGGGGTCAACAGGATGCCGAAATGCAAAAGCGGGCTCTACAAGCAGCCACCCATGCAGCTGCCTTGCGCTTCCTAGAGTCCCATCGTTCAGAGCCACTGTTTCATGATCCATATGCTGGATGCTTTGTTGAACTGGAGCTTTATAAGGAAATCTCTTTAGATAT
TCATAATGTTTCGACAAGCTCTTTGAACTATTATTGTCTTGCAACAAGATTTATTGATGATAAACTGCTTGGTAATGTAAATATGCATAGCAGCATACGACAGATTGTCTTGTTGACAGATGGCATGGATACTCGGCCTTTCAGGTTGAAATGGCCACCTATGACCATGCTTTTTGACATATCCTTTGAGCCTGTCTTTG
AGATGGCATCCAAGAAATTGAAAGAAGTTGGAGTGAAGACATCAAGAAACTCTGTATTCCGACATATTCCTGATGAATCGTCAGACATACAAGAGAAGCTAAAGGGCATGGGTTATAGAGGTGACAGGCTCAGTATCTGGGCAATCCAGGGTTTTCATCCAATGACTTCAGACAGATTTGAAGAGATCGTTTATCAAATT
AGCTGTCTAGCTATGAAAGACAGTCAACTTGTGGGAGAGATACCCCTTACTATTATCAATGCAGATGCTGGTGCAGAGGACCATGCTAGAAGATGGATTGAGAAGGTTCTCAATCGCAATGGTTTTTTGGTGGATTTCATTTCATATGAAGATGTTGCAAGGGATGTTTGCCAGAAACACTTGATCAATGGTGGTCAGCA
TCTTGTGACAGTTGATGGTGGAGAATTGAGAAGTGTTCTTTTTGTAGCTCAACAACAGCGCCTTTCTGATGATCAGGAATGACCTCTTCATTTCTGTTACCATATTCTTATGCCTGACATTTGTGTGTGTGTGTGTGTGTGTGAGGGAAGGTGTTTGACCTCCCAGAGTTGTTTTCAATCTGTCAACAAAGGGGCT