NA ----> NA
Intron 1 GTCAGTTTAT ... CAGTTATGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 43.4 | 35 | 30 | 26.5 |
| A2 | 66.05 | 13.5 | 22.5 | 28 |
| A3 | 73.64 | 16.5 | 43.5 | 47 |
| A4 | 67.66 | 7.5 | 16 | 15 |
| A5 | 49.55 | 5.5 | 4 | 6.5 |
| A6 | 64.28 | 26.5 | 39.5 | 50 |
| A7 | 65.89 | 88.5 | 131 | 180 |
| A8 | 66.61 | 92 | 144.5 | 199 |
| A9 | 70.46 | 76.5 | 155.5 | 195 |
| A10 | 68.68 | 87.5 | 148.5 | 202 |
>TRINITY_DN35829_c0_g1_i1 from sample A8 / Example spliced isoformCCTTAATCGTCATTCGAATGATGAATAATTTGAACTCCTTCAAATTGGCAGGCAAGAAGTTTCAATTTTGATGGTTGCATGGGAGATAGCTGAACAGAGGTAGCCGTTGCAGAAAAATATTTCACTTCCTCTCACAAACCCGTATCTGGGGCGTTCCATCCAGACGCGACGAGAGTAAATAGATATAAAGAAACTATTTC
TCTGATTCGCTTCATTGAGGTGTGGCCATGTCGTCCTTCCGTTCAGTCAGAGCAGACATCTTCGAAAAGGAAGAGCGGAGGCAGCAATATGGAGCATATATCAGAGGGCTTAATGCTTATGAACGTCATCAAAAGTTTATGGCAGATTATGTTCAATTCTATGGTAAATCTACAACTGGAGAGGAAAGACGTCCTGTTAA
AACAGACCAAGATACACTTAGAGAAGCATACAGGTTTATTCGGAGTGAGGAAGATGATCTGGATTCATCATGGGAACAAAGGCTGGCAAAACGTTATCATGACAAACTATTTAAAGAATATTGCATTGCTGACATGTCAAAATACAAGGAGGGCAAGATTGGACTGAGATGGAGAGTAGAGAAGGAAGTTATCCTGGGAA
AAGGTTAACTTTTCTTACCAGGAAGCAGGAGAAAGCAAGCAGGCACTAGTGAAATTGAGAGCTTGCGAATCGTGCTCTATAAAGTTGAACTACAAGAAAGAGAAAGAAAAGGCACGACAATTACATAAACAAGATAAGGAGAGACAAAAACGAATGAGGCATGATAAAGGAGACAAAAAACGACCATATTGTGAAAGTGA
TGATGGATTGCACAACGAATCAGAGAGGAAGGAGAGAAGGAAAGAAATAGGTACAAAGAGTTCTACAGCAGGTTTCAAGCATGAAAGAGACGCTAACGTTGGTCCAGAGTTTGATGAATATTTTGAAGGAATGTTTCTTTGAACCTGCTGGTGATTAGAAAACCATGATGCACTTTGCACTTAATGATCAATTCTTTCTT
ATTATTATAGACAGTTGATTGTATGGTTTATTCTTTGGAGGATGTACAGAAAGTTATATAATGATAACATTAATCTACGCACTGGTGGAATAAAAAATGTATTAGGACCACATATGTGGTTATTCATGACATGAAATAGTGGCTTCTTCAAGAACATATGTAGAAAAATATCATATAATGGCATTGCATACAACTTGTTA
GTGAGCGATCACTATAAATAGTGGTTATACATGTACTTGGAGATGGTATAGTTGAAAGCTCTTTCAACGGGACCAAATGAACTATCTGTTCGTATGTCTGCCTATTCATGTCTACTGGGCAGATAAAATCTTCCTATATTCAATCTTTGGGTTCCATATCATCTAACCAGTAAGAATGGAAGTGTATTGGTCATCAATTT
CTAACGTTGTCAACCAAAATATATTTACTTAAATAATAGAATGCTCAATGTTATCATCTTAAAAAAAAAAAAAAAAGAAAAAAAAG
>TRINITY_DN35829_c0_g1_i4 from sample A8 / Example unspliced isoform:GTGATGGTGCAGGATCAATGGACAGCTAGTTTAGAAAACAAGTTTCCTTCAGTAATAAAGAGTATGTTGCAAGGCTCTTAGACACTGGCATTGATATTCATGGTGTGTTTTATTCTATGTTATTGGAAATGGGACTGTCAGTACCATGTAAAAGGGGTACTATCGTTAATTATATTGCTTTTAAAATTCAAGTCCAGTCT
ATACTTACTAAAGCTAAAAGCTTACTTAACTCAGAGTGTTCCATTTACATATCATCTACAAAATGGATTTTAGTGTTTTGTTTTTTGTTTCGTGGTTGATTAAGATTTATTTCAGATTCTGATGTGGTTGATAACTTGATAATAGTTAATATTTGGAGTTCTGTTAAAAGTAGTTTTTATTGACTTAATGGCACAGCAAA
GTAGTTTGAATTTCACTTTTGCAAATCTTAATGCATGTGAAAATTTTGGCAATGTCATTAGTCATGCAAATTCATAATGAGGAATGGAATTAACAAGGAATGATGTTGAATAGTAGCCATTTCATAATTTTAGGTGGAAGATATTTCTGAGTTTCAAGCATATGTTGTTTTTGTTTGGACTAACTATTGTAGTTAAACAC
TTGTTTTTGGCAGATTGGACTGAGATGGAGAGTAGAGAAGGAAGTTATCCTGGGAAAAGgtcagtttatctgtggaaacaagaaatgcgatgagagagaaggcctgtccagttatgagGTTAACTTTTCTTACCAGGAAGCAGGAGAAAGCAAGCAGGCACTAGTGAAATTGAGAGCTTGCGAATCGTATGTAATTTATT
TTTTGTTTTGTGTTCACCATCTAAGAGTAGGTTCCATAACATGACTGTAATATATTTAATAGTTAGATGTAAATTTGGGCATTTGTTTTAATATGGACTTAAATCAATAATCATCCAGCTCCTATATTACCATAGGCTTATTTCATTGAATGCCATGAGCCTACATTCTACATTTGAACTAGATTATTTTCTATCTGGTA
TTGATTAATTGGTGACAATTCGAAGATCTTAAGAACCAATGAATATGCACATAGAATTGTAACAATTCAATAATCTAGTCAGGCTATTAAATGTTTATTTGAAGTTTTTGATGGAATAAATACTCTTAAGGAAAGCTAATTCATTCAGTCCAGAGAAGATAGATGTGTAGATACAGAAATCTGTGCAGTAGTGACAAAGG
ATCCTATTTTCTTGAATAATAGTATGTAGAACACAGGCTGCCAGTTGAAGCTCCTCAAAGGTGGTTTCTTCTAAGAGGTTCATCTAGTTAAACCTACAAGGTTGATTTTGCTTACTGAATCGTTACCAAGTGTTATGTATTATTGTTGAACATTCATATTTCTCAAACAGATTTACAAATATATGGTTCTTTCTGC