sp|A8MS85|SPT61_ARATH ----> Transcription elongation factor SPT6 homolog
Intron 1 GTAAGTGTTT ... TATTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.53 | 247 | 59 | 46 |
| A2 | 20.47 | 202 | 52 | 52 |
| A3 | 15.01 | 218 | 44 | 33 |
| A4 | 20.61 | 104 | 27 | 27 |
| A5 | 16.36 | 69 | 13 | 14 |
| A6 | 15.56 | 19 | 6 | 1 |
| A7 | 23.26 | 33 | 12 | 8 |
| A8 | 13.33 | 13 | 0 | 4 |
| A9 | 18.03 | 25 | 7 | 4 |
| A10 | 19.67 | 49 | 12 | 12 |
>TRINITY_DN124182_c2_g1_i6 from sample A2 / Example spliced isoformAAAGAAATCTCTAATGTATTACAGATGTTTCATGATCAAAAACTGGAAGTTCCATTTATTGCTATGTATCGAAAAGAAAAGTGCCTTAATTTGATTCAAGAACAAGAGGAAGAACAGAATTCGACAGACAATGGAGACAAAGATGAAAATCCTAAATTGAAAATGTACAAGGCATTGTGGGCAATACAGCGGTGGGATAG
GAAGTGGCTTTTGCTTCAAAGGAGAAAGAATGCTCTCAAAGCATCGTATGAGAAGCGTGCAGCAGAAGAAGCAAGCAGAGATGACAATAAATTGAATATTCTAGAATCAGTTTTACAGTCCCTTGTTAATGCGGAGTCTGAACGTATTGTTGATGACATTGATGCAAAGTTTAACTTGCATTTTCCACCTGATGAAGTTG
AAATAGAAGAAGGCCAGTTTAAAAGACCAAAACGTAAATCTTTGTACAGCATTTGTCGCAAGTCTGGATTAGGAGGCCTGTCACAGAAGTTTAGTCTCAGTTCGGAACAGCTAGGCGAGAATCTACAGTTAATGTACAAGAAACATGAAGTTGAAGATGCCAATGTCACACCAGAGGAGGTGGCTGCTGAATTTTCTGCC
AGAGAATTTGGTGATTCTCAGTCGGTACTTAAAGGTGCCAGGCACATGGCAGCTATAGAAATCAGTTGTGAGCCTACTGTTAAGGAACATGCTCGAAGTGTCTATATGGATAAAGCATTGGTAAGTACAAGGCCCACAACTGATGGAGACAGTGCCATAGATTCCTTTCATCAATATGCAGGGGTGAAGTGGCTAGTTAA
CAAGCCAATTAGTATGTTTGACGATGCCCAGTGGCTTCTCATTCAGAAGGCCGAAGAGGAGAAACTTCTCCAAGTTACTATTGGTTTGCCTAAAGAAGTAATAGATGATTTAATGGGGGAATTAGAAAGTCATTACCTAAGTGATGGGGTCAGCAGAGCTGCCCAGCTATGGAATGAGCAGCGAAAATTAATAGTGAAGG
AAGCCTTATCCCAGTACATTTTACCTAATATGGAGAAGGAAGCACGAATGGTGCTAACAACAAGGGCCAAAAGTTGGTTGGTTCAGGATTATGGGATGCAGCTATGGAAGAAAGCATCAGTTGCTCCCTATAAGCGTCAAAAACGTGATGAGGACCATGCGGATGAAGTTTCAGAAGCACGTGTGATGGCCTGCTGCCAG
GGTTCTTTTAAAGATCCTACAACATTTGTGATGCTAGATTCTTCGGGTGAAGTACTGGATACTCTTTTTACGTCACATTTCAGTATTCGTTCAAAGAACCCTGCTCAGATAAAGCGAAAAGAAATTGATCAACAGCGTTTTTTGAAGTTTATGATGGATCATCAACCTCATGTAGTTGCTTTGGGAGCATCAAACATACA
ATGTAAACACTTGAAGGATGGTATCTATGAGGCCATATTTAAGATTGTGGAGGAGCATCCACGTGAATTTACAGATGGACTGGACAATTTAAATGTGCTTTATGGAGATGTGGTTTTGCCCAGCCTTTATGAGAAGTCCCGCATCTCTCAGGACCAGTTACCAACACAAAAAGGTCTTGTTCGACGTGCCACGGCTCTTG
GACGGTATCTGCAAAATCCATTAGCTATGGTTGCAACGTTATGTGGTCCTGGCAGAGAGATATTATCATTAAAGCTTCATTCATTAGAACATTTCCTTAATCCAGATGAAAGATATGAAGCTATTGAACAGGTAATGGTTACAGTAACAAATCAAGTTGGTGTTGATATAAACTTGGCTGCTTCCCATGAGTGGATGTTT
TCGCCACTGCAATTTGTAGCAGGCCTTGGACCGAGAAAAGCTGCATCCTTACAGAGGGCTATTTTAAGGGCTGGGCGGGTTTACACCCGTAGAGAGTTGTTGACTACCCTTGGAGCAATGAAGCGGCTTGTATTTATAAATGCTGCAGGTTTCTTAAGGGTTAGAGGGACTGGACAGGCAGCAACTGGTAATCATGTCAT
GGATCCATTAGATGATACCAGAATTCATCCTGAATCATATGAACTAGCCAAGAAAATGGCTGAGGATGTATATTGTGAAGATGTGGGACAGGAGATAGACGATATGGACGAAGAAGCACAAGAAATGGCTATTGAACATGTGAAAAGTAATCCGGATGTGCTTAAAGCCCTCGATATTGATGAATATGGTAGAAGTGTGG
AGCAACGGACAGGTGATAGGAAAAATGAAACACTTAATGACATGAAAATTGAGCTAGTTCAAGGTTTTCAGGAATGGCGGCCTCAATATAAACCTCCGACTCAGGATGAGGAATTTTACTTGCTTACTGGAGAAAGTGATGAGACTCTTGCTGAAGGCAAGATAGTACAAGCAACTGTCCGCTTTGTCCAAAATCAGCGT
GTAATATGTGATCTGGAATCAGGCTTGACAGGAATGATTATGAAGGAAGAACTTTCTGATGATAGAGATATTGATCCAATAGAAAAGATCACTGAAGGCAGCATCCTTACCTGTCGGGTGAAATGTATTCAGAAAGCAAAGTACTTGTTGGATTTGACTTGCAAAGCAAGTGAGTTAAGGGGTGATCACTGGCAGAGTGG
ACAGATTAAGGACCCTTACTATGCAAAAGAGGAATCTCTCTTACACAGTGAGCAGGAAAAAACAAAGAAAGAAAAGGAGCTTGCAAAAAAATCTTTCAAAGCGAGGATGATAGTGCATCCGCGATTTCAGAACATATCAGCAGAAGCAGCCATTGAGGCCCTTTCAGACAAGGATGCAGGAGAATGTGTGATCCGCCCAA
GCTACCGAGGTCCATCTTATTTGACACTAACTTTGAAAGTCTGTGATGGAGTTTATGCTCACAAGGACATTATTGAGGGAGGCAAAGACAACAAGGATATGACCACTTACCTTCGTCTTGGGAAAACACTGTCGATTGGGGAAGACACATTTGAAGATCTAGACGAGGTCATTGACAGATATGTGGATCCCCTAGTGAGC
AATCTGAAGGCAATCCTTGCTTACAGGAAATTTAGAAGGGGCACAAAAGCAGAGGTTGATGATGTGTTGCGGAAAGAAAAATATGAAAATCCAACAAGAATTCCATATTATTTATCTGTTTCACATGAACATCCTGGTGCATTTATTCTCTCTTATATCAGGAGTACAAATCCGCACCATGAATATGTGGGGTTATATCC
TAAGGGTTTCAAGTTCAGGAAAAGGATGTTTGACAATCTTGACAAACTTATTGCCTATTTTCAAAAGCACATCAATGATCTTGTTCAAGATTCTCTTCCTCCAATAAGATCTGTTGCTGCAATGGTTCCCATGAAGAGCCCGGGTCCAGGAGGATCTGCAGGAGGAGGCGGTTCTGTTGGCAGTGGCTGGGGAGGTTCTG
CGACAAATAGTGGCGCAGGAGGGGATGGTGGATGGCAGGGCCACTCAGCTACAGATTGGGAAAGGTCCTCAACACCAGGTTCAAGGACAGGTGGAAATGATTTTAATCATAATAATGCCAGTGACGGGCCTCCAAGTGGGTTACCCAGGCCACCATATGGTCGTGATAGGGTAAGGGGAGGAAGAGCCGGTGGTGGTCGG
TTTGGCAGTTGGAATGAAGGGCGAGGAGGTGGTTTTGGTAGGGGTGGGAGTGATGGTAGGGGTGGAAGTATGAGAGGTAGGTGGAGTGAGGATGGAAATAGACGGGGAAGAAACTTTGTCAGGGATAGAGGTGGTGGCAGGGGATCATACGAGTCAAACATGAGCACTAGATGGGGGCAAACTTCTGAAGCTAAAGATGC
TGGTGGAAGCTTTAGTAACCAGCAAGGGGGTGATGGTTGGGGATCGAAAACTGATGAGTGGGGCAGCAATTCAGGCAACAGGATTCAGGATTCTCCTGCCAGAGGAGGTTGGACTGTGAGCTCAGGCGAAAGCGGATGGAGCAAACAAGGCAATGATGGGCATGATATTGGCAAGGTTAGTGATGGTTGGAACTTTGCTA
AAATCAATGATCGAGATGCAACTTCCAAAGACAATGCAGGTGGATGGGACTCTGGTTCTAAAGGTGTTATTGGTGGGTGGGATTCAGATCCCATCGGTGGGAGCAGTGGATGGGATGCTTCAAATAAAGCTGTTCACAATGATGGCAGAACAAATTCTGTCAAGAGCAGTGATAAGTCTAGTGTTGGATGGGGTGCTACT
GAAGCCATGGGCCAGCATAGACAGGCTACAGCTGACGGCTGGGGTGATATCGAAGCAGGCAGGGGCCTGCTTCAACAGGCCACAACTGATAGCTGGGCAATGGATGCAGACAAGGAAACTGACAGTGCATCTAAAGGTTGGACAAAAGATGCTGATGGATGGGGTGATGGAGCAGCAAATCATAAATCAAATGCTGGAGG
TAGCGGGTGGGGGTGACGGGAGAAGTGCAGTGTAACAGGAAGACAACAGAAGAGCAAGAGGAAATGAAGTTGGAGCTGGTCCAAGTCTTTGATAATTTCTACATCCATCCATTTGTAAAAATGTCCTAACATGTTTGAATTGCATTACTTTGCAGAGGATTATGGAATTTTGTTTGAATTGTATTACTTTGCAGAGGATT
ATGGAATTTTATTGTAACAGGTTAAACTAGCAGCAAAGCTGCTTATACCTGCTTTTTAAAAATAGCTTAGAAATATGCATAGTTACTGCTACATAGTAATTGCATCTTACAAAAGATTGATAGTGGGATTAGCATGAAAGCAGTTTAGTACCTGCCTTTTGTGAAAAAATTGATAAAATATAGTTGGATACTAGTAACTA
CGTGGAAAATTAGCAACTGTCTTTTGAGAAAAAAAACTGTCTTTTGAGAAAA
>TRINITY_DN124182_c2_g1_i1 from sample A2 / Example unspliced isoform:AAAGAAATCTCTAATGTATTACAGATGTTTCATGATCAAAAACTGGAAGTTCCATTTATTGCTATGTATCGAAAAGAAAAGTGCCTTAATTTGATTCAAGAACAAGAGGAAGAACAGAATTCGACAGACAATGGAGACAAAGATGAAAATCCTAAATTGAAAATGTACAAGgtaagtgtttagggtaacaacactttttt
ctgcagtgcactctcataactagatgttcacagtatatatcttgtatttttcagGCATTGTGGGCAATACAGCGGTGGGATAGGAAGTGGCTTTTGCTTCAAAGGAGAAAGAATGCTCTCAAAGCATCGTATGAGAAGCGTGCAGCAGAAGAAGCAAGCAGAGATGACAATAAATTGAATATTCTAGAATCAGTTTTACA
GTCCCTTGTTAATGCGGAGTCTGAACGTATTGTTGATGACATTGATGCAAAGTTTAACTTGCATTTTCCACCTGATGAAGTTGAAATAGAAGAAGGCCAGTTTAAAAGACCAAAACGTAAATCTTTGTACAGCATTTGTCGCAAGTCTGGATTAGGAGGCCTGTCACAGAAGTTTAGTCTCAGTTCGGAACAGCTAGGCG
AGAATCTACAGTTAATGTACAAGAAACATGAAGTTGAAGATGCCAATGTCACACCAGAGGAGGTGGCTGCTGAATTTTCTGCCAGAGAATTTGGTGATTCTCAGTCGGTACTTAAAGGTGCCAGGCACATGGCAGCTATAGAAATCAGTTGTGAGCCTACTGTTAAGGAACATGCTCGAAGTGTCTATATGGATAAAGCA
TTGGTAAGTACAAGGCCCACAACTGATGGAGACAGTGCCATAGATTCCTTTCATCAATATGCAGGGGTGAAGTGGCTAGTTAACAAGCCAATTAGTATGTTTGACGATGCCCAGTGGCTTCTCATTCAGAAGGCCGAAGAGGAGAAACTTCTCCAAGTTACTATTGGTTTGCCTAAAGAAGTAATAGATGATTTAATGGG
GGAATTAGAAAGTCATTACCTAAGTGATGGGGTCAGCAGAGCTGCCCAGCTATGGAATGAGCAGCGAAAATTAATAGTGAAGGAAGCCTTATCCCAGTACATTTTACCTAATATGGAGAAGGAAGCACGAATGGTGCTAACAACAAGGGCCAAAAGTTGGTTGGTTCAGGATTATGGGATGCAGCTATGGAAGAAAGCAT
CAGTTGCTCCCTATAAGCGTCAAAAACGTGATGAGGACCATGCGGATGAAGTTTCAGAAGCACGTGTGATGGCCTGCTGCCAGGGTTCTTTTAAAGATCCTACAACATTTGTGATGCTAGATTCTTCGGGTGAAGTACTGGATACTCTTTTTACGTCACATTTCAGTATTCGTTCAAAGAACCCTGCTCAGATAAAGCGA
AAAGAAATTGATCAACAGCGTTTTTTGAAGTTTATGATGGATCATCAACCTCATGTAGTTGCTTTGGGAGCATCAAACATACAATGTAAACACTTGAAGGATGGTATCTATGAGGCCATATTTAAGATTGTGGAGGAGCATCCACGTGAATTTACAGATGGACTGGACAATTTAAATGTGCTTTATGGAGATGTGGTTTT
GCCCAGCCTTTATGAGAAGTCCCGCATCTCTCAGGACCAGTTACCAACACAAAAAGGTCTTGTTCGACGTGCCACGGCTCTTGGACGGTATCTGCAAAATCCATTAGCTATGGTTGCAACGTTATGTGGTCCTGGCAGAGAGATATTATCATTAAAGCTTCATTCATTAGAACATTTCCTTAATCCAGATGAAAGATATG
AAGCTATTGAACAGGTAATGGTTACAGTAACAAATCAAGTTGGTGTTGATATAAACTTGGCTGCTTCCCATGAGTGGATGTTTTCGCCACTGCAATTTGTAGCAGGCCTTGGACCGAGAAAAGCTGCATCCTTACAGAGGGCTATTTTAAGGGCTGGGCGGGTTTACACCCGTAGAGAGTTGTTGACTACCCTTGGAGCA
ATGAAGCGGCTTGTATTTATAAATGCTGCAGGTTTCTTAAGGGTTAGAGGGACTGGACAGGCAGCAACTGGTAATCATGTCATGGATCCATTAGATGATACCAGAATTCATCCTGAATCATATGAACTAGCCAAGAAAATGGCTGAGGATGTATATTGTGAAGATGTGGGACAGGAGATAGACGATATGGACGAAGAAGC
ACAAGAAATGGCTATTGAACATGTGAAAAGTAATCCGGATGTGCTTAAAGCCCTCGATATTGATGAATATGGTAGAAGTGTGGAGCAACGGACAGGTGATAGGAAAAATGAAACACTTAATGACATGAAAATTGAGCTAGTTCAAGGTTTTCAGGAATGGCGGCCTCAATATAAACCTCCGACTCAGGATGAGGAATTTT
ACTTGCTTACTGGAGAAAGTGATGAGACTCTTGCTGAAGGCAAGATAGTACAAGCAACTGTCCGCTTTGTCCAAAATCAGCGTGTAATATGTGATCTGGAATCAGGCTTGACAGGAATGATTATGAAGGAAGAACTTTCTGATGATAGAGATATTGATCCAATAGAAAAGATCACTGAAGGCAGCATCCTTACCTGTCGG
GTGAAATGTATTCAGAAAGCAAAGTACTTGTTGGATTTGACTTGCAAAGCAAGTGAGTTAAGGGGTGATCACTGGCAGAGTGGACAGATTAAGGACCCTTACTATGCAAAAGAGGAATCTCTCTTACACAGTGAGCAGGAAAAAACAAAGAAAGAAAAGGAGCTTGCAAAAAAATCTTTCAAAGCGAGGATGATAGTGCA
TCCGCGATTTCAGAACATATCAGCAGAAGCAGCCATTGAGGCCCTTTCAGACAAGGATGCAGGAGAATGTGTGATCCGCCCAAGCTACCGAGGTCCATCTTATTTGACACTAACTTTGAAAGTCTGTGATGGAGTTTATGCTCACAAGGACATTATTGAGGGAGGCAAAGACAACAAGGATATGACCACTTACCTTCGTC
TTGGGAAAACACTGTCGATTGGGGAAGACACATTTGAAGATCTAGACGAG