sp|Q9XGM2|MRE11_ARATH ----> Double-strand break repair protein MRE11
Intron 1 GTGCTCGAAG ... AAGTCATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.6 | 19 | 45 | 38 |
| A2 | 69.23 | 16 | 36 | 36 |
| A3 | 62.59 | 26 | 45 | 42 |
| A4 | 66.1 | 10 | 17 | 22 |
| A5 | 75 | 5 | 15 | 15 |
| A6 | 67.35 | 8 | 17 | 16 |
| A7 | 61.4 | 44 | 73 | 67 |
| A8 | 66.28 | 29 | 64 | 50 |
| A9 | 66.46 | 27 | 51 | 56 |
| A10 | 60.49 | 32 | 47 | 51 |
>TRINITY_DN108862_c0_g1_i4 from sample A3 / Example spliced isoformTATTATTGTTTGCTTCCTATTTGATATTTTGAAGTGTCCTAATATTAGAATGGTGCTATTATTGGCGTTTGATGACTTTTTCCGATTCCTAAATGTTTTCAGGTCAGAGGACGTCTCAATAATGCTAATTTGCCTAGACTATCTGGAATGCTAGATCATGAAAGATATTTTTTAAAGCCCAGAAGCTCCAGTTTGAGTCA
GGCAGAAGATAAGGATCGTGTGCTACCTCCTGAAAAAGGAAATTGTGAAAAGCTAAGAATGAAAGGTAACCATTCTGGAATCAAGACAGACATTTCTTCAACGTCAATGATCAACAGACACAAAGACCGGGAGCATAAATTGGGTGTTCAACATAAGAGTAATAATGATAGCCGAGCAAGGCCAAGTGAAAGACCTGGTT
TCAGGCCAACTATGCATGAAGAGAATCAGGCAGCTAGCTCAACTGCAATAATAAACGGAAAGATCTCTCAGAAGCCTCGATCTAGTTCAGCCACATCAGCTATTTCTTCACAATGTGTTGTTCATCCAGGTACAAACAGGATCAACTTTGCCCCTGGATTAGGTAATGGCAAACGTTCAGCACAAACAATATCTTCATCA
CCCTCAGTTGCACAATGGGTTGGGCAGAGGCCAGTAAAGACAGCCCGAATTGCAAGACGAATTAACTTGGCTCCAACTGCAATTCAAGTTGATGATAGAAGTTTTGCAGAAGGTTTTGGTTATAATGACACTTCTGGTGGTGAGAGTGCTAAACCTGATTCCCATGCAATCTTGGGGTCAGATGTTGCAGGACGTTTATC
CAACTGTAAGCCTTTTTCCCATGGCAAAGTAAAGACTGATAATTTAAATTCCTCTACTGGGTTATCAGAAAGAGGGCATATAGAAGGGGGTCATAAGAGAAAATCTATGGACAAGAGAAAAACTAATGCAGTTGTAGAGGTAACATTTAAACAAGCAGATCCAAGTCTTGCAACACTGGTTTTGTCTACAAATAATTCAG
AGGTTTCTTCTAAAGAAGGCAATAGAGATGGCATACGTAGACAAGGAAGAAGCAGGAGGCGTTCTGCTTCTGCAGGGATCAGGGTATGTAAAGCTGGTGACAAAATAGATATAACTTCGAACACAAAGCAGCTTCGAAGTATGAGGATGGTTTTTGATAAAGTGAAAAACAAGCCAAGCCAACCTCTGACCAAAAAAAGG
TCATCTGATTGCAAGTCCTTTACTAGATCCAGGTGCACAGTAAATAGTGTGTCATCAGACCTTACAGGGGAAATGGATGATGATCGTGAAGAAATTGTAGCAGCTGCTGAAGCTGCTATTAATACAAGGGATGTTGCATGTTCTGGGCCATTTTGGAAGGAAATGGAGCATTACTTTGCAGTTCCTACAAAAGATGATAC
AGATTACCTGAAGCAATATGTTGATTTTGTTTGTAAGACAACACCAACATCTTCCAGCCAACCCACATGCTCGTCAAATAAAAAATTGGATAATGATGCTTTGGGGCTCTTTGGCAGTCTGAAAAAACTGCCGTCATTATCAGAGGTGGTTCTTTCTGCTTTTACCACTGAGGATGTGACTGAACAAAGAACAAGGATTC
AAGATGATGGTGAACAGCATGGCAACTTTGATTACATGTCCGAGGTATCACCTTCTGGAATTTGTAATGATATTGACTGTGGGTCCAAGGGTTCTAGCAGAAGGAAATCAGAGATGGGAGCAGAAATGAACAGAGATAATGATAGAGTAAACAGGTGTTATGCATGTTCTACATCCTCAAATGCCCATCAAATATATTTA
TCAGGAGTCCTTTTCCAAAATGATGAAACTGGATTGGAAGGAGATGTTGAAGATTCAGAGTTGGATGCTTTGGATGAAAGACATCCACGAGTCTGGCAGAAGAATCAAGATGATCTAATTTCTGGCCACCAATCTGATAGCACGGTTTCTTCCATATTTACAGATGCAATTGAGTACAAAAACATGTGTTTGGAATCTCT
AGACAGTAGGATTCTACAGGAACTTCAACATACGCTTCCAGAAGCCGTGCCTGATCTAGCATTGAGAGAAGATGACGAAATATCGGAGTACCTTCACAAACTTCAGAATGAACTTCAACAACAGGAAGCCAAAAATAAAGCACGAATATACAATCTGGAAAAGGCTGTTTTGAGGAAGCGGCAATTTGAAGACAGGGAGC
GAGAGCATCTTGCTATGAACAAGCTTTTGGAGAGAGCTTTTAATCGACGCATAGGACACCGAGGTACAAATTTCTCTCCAAAGAGTTCAGGAAGCAGGGTTGCAAAGCAGGCTGCATTGTCTTTTGCAAAGCGGACATTAGAAAGGTGTCGAAACTTTGATGCAACAGGCAGGAGTTGCTTTACTGAAGCCACCTTGAAG
GAAAAGCTTTTCTGTATAAATTCCAAGGAGACAGACATAAAATCTACTGCAGATACAACCGAGTGCAAGACTCTCCCAGCAAATTCAAATTCTGGAGATGTTTCTACTTTGGCTTCGGAGAATTCTGGTCATCTTGTAGCTCAGCAGATACAGAAGAAAGACATGGAAAGCAAGGAACAATCCGATTCATGCCAGGCAGC
TACATCTTCATTAGAACAAACTGGTCGGAAAGATGATTCAGGTTCTATACGAACAAGAAATAAGGAAGTGCTCCTTGAGGATGTAGTTAGAAGCAGTGACCTAAGAAACTCATCTGTTCCTGGAACTTCTCTAATTGGATGGAGAAAGGGCAAGCATGGTGAGAGGGAGCAAGAGGGAAAGGGAAAGAATAAGGAGATCA
TAGCCAGAATGAACAATGCTAAGAGTGGTCGACACTGTTCAAGGAATGTCATGGGAGAGAGAGAAACGAAAAGAAAACCAAGGCAGAGAAATGCTCAGCTATCAAAGGAGGTGAATGATCTACCGAGCAAGCCCACTGAAGGACAAAACAAATGTTCATCAAATTTTAATGAAAATGCTAGGGATAAAAGCATTAAAGCG
AAGGGTGAATTTAAAATAGGAACTAGTCCTGGTATTTCTCAGGATGTACAATGTGAATCTGAGGGAGCCATTGATTTGTGGGTGGGTGACCAACATCATGACTTGAGTACATTTTGGAATTTTGAGGAGGATATCTTGCCTGATGCAGCGGGTGATTATAATCTTGAAGTGCCCATGGATGACCTTTTTGACATTAGAAT
GATCTGAGAACATGTTCTCTCAGGTTTTAACTTTTTATGGCTTTAGTTTGATTCAATAGCTGTACAGTACAGACAATATTTGTAAGGATTCAGCAAAAAGAGAACTAAAGCAATGAGTTATCTTTTGCTGATGAATGCCACTTGTACCATAGTAGGATAGATGTATTCCTTTGAAATATTTATATATAAGTTAGCTATTG
GTGCATTATGCATTTCAAAAACTGCATGCATCAATTGCTCCGCTTGTAATGATGTGCAAATGTTGATTCCTCACTTGGTTCCATAAAAGCTTGCGTTCTCTCCCAGTTTATGGCAGGTATTCAGTTGTGATTGTAGCCTTTGATTCTATAAAGGTGCCAAACTTGGCAGTGAATTCATTCAGTGCTGTTTGTGACTTACT
CATGAGGTTGTTGTAGTTAGTGATATTATGGTACAATAGC
>TRINITY_DN108862_c0_g1_i9 from sample A3 / Example unspliced isoform:ACCAAACCAGTTCAAATTCTACAGATATGGGGTCTCGCATAACAGATGATAGAAACAAATCTGCAGTACCTAATAAGCGAGTTCGCACATCAATGGTGGACACAAGGGTCAGAGGACGTCTCAATAATGCTAATTTGCCTAGACTATCTGGAATGCTAGATCATGAAAGATATTTTTTAAAGCCCAGAAGCTCCAGTTTG
AGTCAGGCAGAAGATAAGGATCGTGTGCTACCTCCTGAAAAAGGAAATTGTGAAAAGCTAAGAATGAAAGGTAACCATTCTGGAATCAAGACAGACATTTCTTCAACGTCAATGATCAACAGACACAAAGACCGGGAGCATAAATTGGGTGTTCAACATAAGAGTAATAATGATAGCCGAGCAAGGCCAAGTGAAAGACC
TGGTTTCAGGCCAACTATGCATGAAGAGAATCAGGCAGCTAGCTCAACTGCAATAATAAACGGAAAGATCTCTCAGAAGCCTCGATCTAGTTCAGCCACATCAGCTATTTCTTCACAATGTGTTGTTCATCCAGGTACAAACAGGATCAACTTTGCCCCTGGATTAGGTAATGGCAAACGTTCAGCACAAACAATATCTT
CATCACCCTCAGTTGCACAATGGGTTGGGCAGAGGCCAGTAAAGACAGCCCGAATTGCAAGACGAATTAACTTGGCTCCAACTGCAATTCAAGTTGATGATAGAAGTTTTGCAGAAGGTTTTGGTTATAATGACACTTCTGGTGGTGAGAGTGCTAAACCTGATTCCCATGCAATCTTGGGGTCAGATGTTGCAGGACGT
TTATCCAACTGTAAGCCTTTTTCCCATGGCAAAGTAAAGACTGATAATTTAAATTCCTCTACTGGGTTATCAGAAAGAGGGCATATAGAAGGGGGTCATAAGAGAAAATCTATGGACAAGAGAAAAACTAATGCAGTTGTAGAGGTAACATTTAAACAAGCAGATCCAAGTCTTGCAACACTGGTTTTGTCTACAAATAA
TTCAGAGGTTTCTTCTAAAGAAGGCAATAGAGATGGCATACGTAGACAAGGAAGAAGCAGGAGGCGTTCTGCTTCTGCAGGGATCAGGGTATGTAAAGCTGGTGACAAAATAGATATAACTTCGAACACAAAGCAGCTTCGAAGTATGAGGATGGTTTTTGATAAAGTGAAAAACAAGCCAAGCCAACCTCTGACCAAAA
AAAGGTCATCTGATTGCAAGTCCTTTACTAGATCCAGGTGCACAGTAAATAGTGTGTCATCAGACCTTACAGGGGAAATGGATGATGATCGTGAAGAAATTGTAGCAGCTGCTGAAGCTGCTATTAATACAAGGGATGTTGCATGTTCTGGGCCATTTTGGAAGGAAATGGAGCATTACTTTGCAGTTCCTACAAAAGAT
GATACAGATTACCTGAAGCAATATGTTGATTTTGTTTGTAAGACAACACCAACATCTTCCAGCCAACCCACATGCTCGTCAAATAAAAAATTGGATAATGATGCTTTGGGGCTCTTTGGCAGTCTGAAAAAACTGCCGTCATTATCAGAGGTGGTTCTTTCTGCTTTTACCACTGAGGATGTGACTGAACAAAGAACAAG
GATTCAAGATGATGGTGAACAGCATGGCAACTTTGATTACATGTCCGAGGTATCACCTTCTGGAATTTGTAATGATATTGACTGTGGGTCCAAGGGTTCTAGCAGAAGGAAATCAGAGATGGGAGCAGAAATGAACAGAGATAATGATAGAGTAAACAGGTGTTATGCATGTTCTACATCCTCAAATGCCCATCAAATAT
ATTTATCAGGAGTCCTTTTCCAAAATGATGAAACTGGATTGGAAGGAGATGTTGAAGATTCAGAGTTGGATGCTTTGGATGAAAGACATCCACGAGTCTGGCAGAAGAATCAAGATGATCTAATTTCTGGCCACCAATCTGATAGCACGGTTTCTTCCATATTTACAGATGCAATTGAGTACAAAAACATGTGTTTGGAA
TCTCTAGACAGTAGGATTCTACAGGAACTTCAACATACGCTTCCAGAAGCCGTGCCTGATCTAGCATTGAGAGAAGATGACGAAATATCGGAGTACCTTCACAAACTTCAGAATGAACTTCAACAACAGGAAGCCAAAAATAAAGCACGAATATACAATCTGGAAAAGGCTGTTTTGAGGAAGCGGCAATTTGAAGACAG
GGAGCGAGAGCATCTTGCTATGAACAAGCTTTTGGAGAGAGCTTTTAATCGACGCATAGGACACCGAGGTACAAATTTCTCTCCAAAGAGTTCAGGAAGCAGGGTTGCAAAGCAGGCTGCATTGTCTTTTGCAAAGCGGACATTAGAAAGGTGTCGAAACTTTGATGCAACAGGCAGGAGTTGCTTTACTGAAGCCACCT
TGAAGGAAAAGCTTTTCTGTATAAATTCCAAGGAGACAGACATAAAATCTACTGCAGATACAACCGAGTGCAAGACTCTCCCAGCAAATTCAAATTCTGGAGgtgctcgaagctccttggatatgaagtcattagATGTTTCTACTTTGGCTTCGGAGAATTCTGGTCATCTTGTAGCTCAGCAGATACAGAAGAAAGAC
ATGGAAAGCAAGGAACAATCCGATTCATGCCAGGCAGCTACATCTTCATTAGAACAAACTGGTCGGAAAGATGATTCAGGTTCTATACGAACAAGAAATAAGGAAGTGCTCCTTGAGGATGTAGTTAGAAGCAGTGACCTAAGAAACTCATCTGTTCCTGGAACTTCTCTAATTGGATGGAGAAAGGGCAAGCATGGTGA
GAGGGAGCAAGAGGGAAAGGGAAAGAATAAGGAGATCATAGCCAGAATGAACAATGCTAAGAGTGGTCGACACTGTTCAAGGAATGTCATGGGAGAGAGAGAAACGAAAAGAAAACCAAGGCAGAGAAATGCTCAGCTATCAAAGGAGGTGAATGATCTACCGAGCAAGCCCACTGAAGGACAAAACAAATGTTCATCAA
ATTTTAATGAAAATGCTAGGGATAAAAGCATTAAAGCGAAGGGTGAATTTAAAATAGGAACTAGTCCTGGTATTTCTCAGGATGTACAATGTGAATCTGAGGGAGCCATTGATTTGTGGGTGGGTGACCAACATCATGACTTGAGTACATTTTGGAATTTTGAGGAGGATATCTTGCCTGATGCAGCGGGTGATTATAAT
CTTGAAGTGCCCATGGATGACCTTTTTGACATTAGAATGATCTGAGAACATGTTCTCTCAGGTTTTAACTTTTTATGGCTTTAGTTTGATTCAATAGCTGTACAGTACAGACAATATTTGTAAGGATTCAGCAAAAAGAGAACTAAAGCAATGAGTTATCTTTTGCTGATGAATGCCACTTGTACCATAGTAGGATAGAT
GTATTCCTTTGAAATATTTATATATAAGTTAGCTATTGGTGCATTATGCATTTCAAAAACTGCATGCATCAATTGCTCCGCTTGTAATGATGTGCAAATGTTGATTCCTCACTTGGTTCCATAAAAGCTTGCGTTCTCTCCCAGTTTATGGCAGGTATTCAGTTGTGATTGTAGCCTTTGATTCTATAAAGGTGCCAAAC
TTGGCAGTGAATTCATTCAGTGCTGTTTGTGACTTACTCATGAGGTTGTTGTAGTTAGTGATATTATGGTACAATAGC
Intron 2 GTATGTTTTC ... GGTGCCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.21 | 25 | 13 | 2 |
| A2 | 17.86 | 23 | 5 | 2 |
| A3 | 30.56 | 25 | 11 | 3 |
| A4 | 16 | 21 | 4 | 0 |
| A5 | 35.29 | 11 | 6 | 0 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 15.79 | 16 | 3 | 0 |
| A8 | 0 | 4 | 0 | 0 |
| A9 | 10 | 18 | 2 | 0 |
| A10 | 7.69 | 12 | 1 | 0 |
>TRINITY_DN122297_c0_g2_i5 from sample A1 / Example spliced isoformAGTAAAGACAGCCCGAATTGCAAGACGAATTAACTTGGCTCCAACTGCAATTCAAGTTGATGATAGAAGTTTTGCAGAAGGTTTTGGTTATAATGACACTTCTGGTGGTGAGAGTGCTAAACCTGATTCCCATGCAATCTTGGGGTCAGATGTTGCAGGACGTTTATCCAACTGTAAGCCTTTTTCCCATGGCAAAGTAA
AGACTGATAATTTAAATTCCTCTACTGGGTTATCAGAAAGAGGGCATATAGAAGGGGGTCATAAGAGAAAATCTATGGACAAGAGAAAAACTAATGCAGTTGTAGAGGTAACATTTAAACAAGCAGATCCAAGTCTTGCAACACTGGTTTTGTCTACAAATAATTCAGAGGTTTCTTCTAAAGAAGGCAATAGAGATGGC
ATACGTAGACAAGGAAGAAGCAGGAGGCGTTCTGCTTCTGCAGGGATCAGGGTATGTAAAGCTGGTGACAAAATAGATATAACTTCGAACACAAAGCAGCTTCGAAGTATGAGGATGGTTTTTGATAAAGTGAAAAACAAGCCAAGCCAACCTCTGACCAAAAAAAGGTCATCTGATTGCAAGTCCTTTACTAGATCCAG
GTGCACAGTAAATAGTGTGTCATCAGACCTTACAGGGGAAATGGATGATGATCGTGAAGAAATTGTAGCAGCTGCTGAAGCTGCTATTAATACAAGGGATGTTGCATGTTCTGGGCCATTTTGGAAGGAAATGGAGCATTACTTTGCAGTTCCTACAAAAGATGATACAGATTACCTGAAGCAATATGTTGATTTTGTTT
GTAAGACAACACCAACATCTTCCAGCCAACCCACATGCTCGTCAAATAAAAAATTGGATAATGATGCTTTGGGGCTCTTTGGCAGTCTGAAAAAACTGCCGTCATTATCAGAGGTGGTTCTTTCTGCTTTTACCACTGAGGATGTGACTGAACAAAGAACAAGGATTCAAGATGATGGTGAACAGCATGGCAACTTTGAT
TACATGTCCGAGGTATCACCTTCTGGAATTTGTAATGATATTGACTGTGGGTCCAAGGGTTCTAGCAGAAGGAAATCAGAGATGGGAGCAGAAATGAACAGAGATAATGATAGAGTAAACAGGTGTTATGCATGTTCTACATCCTCAAATGCCCATCAAATATATTTATCAGGAGTCCTTTTCCAAAATGATGAAACTGG
ATTGGAAGGAGATGTTGAAGATTCAGAGTTGGATGCTTTGGATGAAAGACATCCACGAGTCTGGCAGAAGAATCAAGATGATCTAATTTCTGGCCACCAATCTGATAGCACGGTTTCTTCCATATTTACAGATGCAATTGAGTACAAAAACATGTGTTTGGAATCTCTAGACAGTAGGATTCTACAGGAACTTCAACATA
CGCTTCCAGAAGCCGTGCCTGATCTAGCATTGAGAGAAGATGACGAAATATCGGAGTACCTTCACAAACTTCAGAATGAACTTCAACAACAGGAAGCCAAAAATAAAGCACGAATATACAATCTGGAAAAGGCTGTTTTGAGGAAGCGGCAATTTGAAGACAGGTAAACTTCTAGTGAAAGCAATCATGAAGTGCTTATG
TCAAGATTTGACATGATATTGCCAATATCTGATAGATTATTAGTCTTTGACAAGTTATATGATAATAGTTGGGAAAGGCGACTCGTTCATGTCTCAGTTGTTTATGGTTATTTGCAATTTATTTGCTTTTGCTATATTAGCATCCAGTGTGTGTCTTTCAAAGTTCAGAGCTTAGATGGTTCATCCTATCATGGGACAGT
TAAGGGCTTTGGTGCCCTCTCTTTTTATTTCCGATTCCTTGGATAGAAAGTAAACAAGAAATTTAATATGTTGAGTGTTTGGCTCCATATTTTGATAGATTGAT
>TRINITY_DN122297_c0_g2_i1 from sample A1 / Example unspliced isoform:AGTAAAGACAGCCCGAATTGCAAGACGAATTAACTTGGCTCCAACTGCAATTCAAGTTGATGATAGAAGTTTTGCAGAAGGTTTTGGTTATAATGACACTTCTGGTGGTGAGAGTGCTAAACCTGATTCCCATGCAATCTTGGGGTCAGATGTTGCAGGACGTTTATCCAACTGTAAGCCTTTTTCCCATGGCAAAGTAA
AGACTGATAATTTAAATTCCTCTACTGGGTTATCAGAAAGAGGGCATATAGAAGGGGGTCATAAGAGAAAATCTATGGACAAGAGAAAAACTAATGCAGTTGTAGAGGTAACATTTAAACAAGCAGATCCAAGTCTTGCAACACTGGTTTTGTCTACAAATAATTCAGAGGTTTCTTCTAAAGAAGGCAATAGAGATGGC
ATACGTAGACAAGGAAGAAGCAGGAGGCGTTCTGCTTCTGCAGGGATCAGGGTATGTAAAGCTGGTGACAAAATAGATATAACTTCGAACACAAAGCAGCTTCGAAGTATGAGGATGGTTTTTGATAAAGTGAAAAACAAGCCAAGCCAACCTCTGACCAAAAAAAGGTCATCTGATTGCAAGTCCTTTACTAGATCCAG
GTGCACAGTAAATAGTGTGTCATCAGACCTTACAGGGGAAATGGATGATGATCGTGAAGAAATTGTAGCAGCTGCTGAAGCTGCTATTAATACAAGGGgtatgttttcaacttatcagcacacacacatattacattatgtgatttcagagtactgtatttgtagagttactatacaaggctcataattgtgtcgcttct
tcctttgcttgactctatgcagcttttgtaactaattgtcgttcatttgatttattttgtccttctgaatgggtgccacagATGTTGCATGTTCTGGGCCATTTTGGAAGGAAATGGAGCATTACTTTGCAGTTCCTACAAAAGATGATACAGATTACCTGAAGCAATATGTAATTTCTCTTAGACATGTATCAATTCAT
TATGCTTCCTTTTTTGGACCTAATGTTATTCACGCGACATATTTCCTATTTGATTATTTTTTTATTGTTTATTATTTCATCCAATTCTTTGAATCCATAAGACCCATAATATGGTAGATACTTTGGCTGACGCTAATGAGCTGCTTGTAGGAATTGTTAGATTGCCAAGGGCATCCATTGTTATCCTTGGAAAAATGGAA
TTTTACTACTCTTGTGAAGAGGGTATCCGCTGCTACCCTCATTATAGCTAGAGAGTAAAATGTAAGAGTCGTTTTGGCTTAGAATCCACTGCTGAAGGGTATTTGTTCCATCAAAATCACCATAGACATGCACCCAAACTCAGCCAGTTGTCACCTAGAGGACTTTGCCTATAGTTGCTCCCATTATGGTGGTATAATGG
GTAAGGTTGCATTGTTAATACTAAATAGTGGTATCAAAGGCATGTTCAAATCTTTTATCCAAAGGAAAACATTGCCAAATATTATAACTTATAAGTGAATACCAGATTTCTTAGGAGTCCAAGGAGCAAGAATATCTGAAGTAAATAAGACACAACATCTACTAGACCTAAGACAAACTTTGGTCTATTTGTAA