NA ----> NA
Intron 1 GTACAATCCA ... CCCCTCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 2 | 2 |
| A2 | 100 | 0 | 2 | 4 |
| A3 | 100 | 0 | 1 | 6 |
| A4 | 100 | 0 | 6 | 1 |
| A5 | 75 | 1 | 2 | 4 |
| A6 | 72.84 | 11 | 32 | 27 |
| A7 | 73.49 | 11 | 37 | 24 |
| A8 | 84.62 | 2 | 8 | 14 |
| A9 | 89.47 | 3 | 26 | 25 |
| A10 | 73.58 | 7 | 16 | 23 |
>TRINITY_DN43565_c0_g1_i1 from sample A6 / Example spliced isoformAGCTGGAGACGTCTGTGATTGCAGAAGCAGGGCTCAATCCCTCACATGGAATCCAATATCGGCTGCCTAACAAACGCAGCACCAATTCCGCAGGTGTCCCAATTGCCATAAAACTTATGGGCCACCCTTCATTCCCAATAGATTAGCGAGTTCGGGACAAAACAAGGAGATTGACTCTGTAAATTTAGCTATACCCCAAA
CAACTCCAGAAGACCTTAAAAGTACCGAACAATTGTCTTTCAGAAACCTCTCAAATAGGTCTTCAACGCCACCAAATTCTTCATGCGAGGCACCAGCTAAACAAGACATAGATAACAATGCTACCCCACTAACAGGTCAAGGGCCTCATGTTCAGTCTCCTCGTGTTCATCCACCAGTGAGACCAGCTATGCATTCTCCT
GCTTTCCCTTCACCCATTTGCATCTATCATCCTTTCTTACCCTGTAGACTACATGGTTATTGGCATCCCCCACTACACATGTGTCCTATGGCTGGACCTGTGCCTCCTTTCTCTTCCATGCATCCTGTATATCCTTCAAAATTTAGCTATGTTGAACCTGAGTTGAATAGAGTGGGCGCACCGCCCACAAATCTAGCGGG
TACACCGACACCCACTGTAATTGGTACTGCAGCTGAGAACTGGCATGGAAATGGAGATTCTGAAGACTTGCAAGATAGAGCAATTGAAGATGCATATGAGCGAGAGGATGAAGAGGATGAGCCCATATTTGTTTTAACAGATGAGTGGATGGAGTTTTTTGCTAAATCTGAGGCCAGAAGACAAGAAAAGAAGAAAAAGC
GACAGAAAGAGTTAAAGAAAATACGCAGAGCTGAGAGATCAGCACAACTGAAGCCCACTGGTGGGCTTGAAATATCGCCCTCTTTCTTGTTTGTGTCCGAAGAAGGGACATCTGCTAGTGCATTAGATGGTAGGTAAGAAGGGACTTGAAATATCACCTTCTTACTTTACATTTTTTTTCTTTTTTCCTGAGGGAGCCTG
CCACTGTCAGAATATGTATTGGTTATTCCTTTCAAAAGTCATGTGGGTATTTTTCGATTCTGATTTCATTGTATCTGTTATGCCCAAGTACGTGGCAAACCCTTAATATAATATCATCCGTTTTTATCGTTTTTAAGTTTGAAGTTTTGATCATATGTTCATCCAACAAAGCTTTTTGTAATTTCTTCTTAGGAAATCTT
TTAGCTAATTTCTTCTAAAGAGAATCTTTTATCGTGTTATGTATCTTCTACTGATGTATTAAGGCCTAGGAATTTAGTAAAGGCTGACTTTTTTGTAGGTGTGATTAATCATGTAATAAGGCCTGTGACATTAAAATTTAAAATAGGAGTAGGTGAGTGCTAATTTTGTAATGAGGCCACAGTGATTAATTAAGGCCAAC
ATGGTAGGTATAATGTGTGCTATTAATTATGTAATGAGGCTATAATCATTAAGTAATGCCAACTGGAACAAATGTTGCATTCGCTAGAGTGCTACCATTGGCTTGTGGAACAGGGACCAATGCCAAGTACTTTTGGAGGTCCTCAAATACCTAAGCAGAGCGCTTAATTAAACATGGATTTTCTTTTTGGCTTATTTTTG
TTTTCCTAATCAACAATTGCGCGAAGAGAATTTGTAAGGGTCATTTTAGAAATCCT
>TRINITY_DN43565_c0_g1_i3 from sample A6 / Example unspliced isoform:TCCAGCCTCCCCTTACGAAATCCACGTATACAGGCTATATAATAAAATTCAAAACGGAATCTGGGTTCTCTTGGTCTGCTCTCCTCAACTAGTGCTCCTAACTGTATGTTCGGCAAAGCACGAACAACTTAAAGCTAAGGCGATTTGTTGGTCTGTTCATTCGTCGGAGAGTCGCTTGAATTTTTTTTCGAAGTCCTACT
GCATAAGCTGGAGACGTCTGTGATTGCAGAAGCAGGGCTCAATCCCTCACATGGAATCCAATATCGGCTGCCTAACAAACGCAGCACCAATTCCGCAGgtacaatccacaccccactctgtttgtttacatcgaccgccattttatcaatacccatttcatagttgccctcctcattactggttctctcagtcattaatg
cattctcatgccccaattcaaacccctcccagGTGTCCCAATTGCCATAAAACTTATGGGCCACCCTTCATTCCCAATAGATTAGCGAGTTCGGGACAAAACAAGGAGATTGACTCTGTAAATTTAGCTATACCCCAAACAACTCCAGAAGACCTTAAAAGTACCGAACAATTGTCTTTCAGAAACCTCTCAAATAGGTC
TTCAACGCCACCAAATTCTTCATGCGAGGCACCAGCTAAACAAGACATAGATAACAATGCTACCCCACTAACAGGTCAAGGGCCTCATGTTCAGTCTCCTCGTGTTCATCCACCAGTGAGACCAGCTATGCATTCTCCTGCTTTCCCTTCACCCATTTGCATCTATCATCCTTTCTTACCCTGTAGACTACATGGTTATT
GGCATCCCCCACTACACATGTGTCCTATGGCTGGACCTGTGCCTCCTTTCTCTTCCATGCATCCTGTATATCCTTCAAAATTTAGCTATGTTGAACCTGAGTTGAATAGAGTGGGCGCACCGCCCACAAATCTAGCGGGTACACCGACACCCACTGTAATTGGTACTGCAGCTGAGAACTGGCATGGAAATGGAGATTCT
GAAGACTTGCAAGATAGAGCAATTGAAGATGCATATGAGCGAGAGGATGAAGAGGATGAGCCCATATTTGTTTTAACAGATGAGTGGATGGAGTTTTTTGCTAAATCTGAGGCCAGAAGACAAGAAAAGAAGAAAAAGCGACAGAAAGAGTTAAAGAAAATACGCAGAGCTGAGAGATCAGCACAACTGAAGCCCACTGG
TGGGCTTGAAATATCGCCCTCTTTCTTGTTTGTGTCCGAAGAAGGGACATCTGCTAGTGCATTAGATGGTAGGTAAGAAGGGACTTGAAATATCACCTTCTTACTTTACATTTTTTTTCTTTTTTCCTGAGGGAGCCTGCCACTGTCAGAATATGTATTGGTTATTCCTTTCAAAAGTCATGTGGGTATTTTTCGATTCT
GATTTCATTGTATCTGTTATGCCCAAGTACGTGGCAAACCCTTAATATAATATCATCCGTTTTTATCGTTTTTAAGTTTGAAGTTTTGATCATATGTTCATCCAACAAAGCTTTTTGTAATTTCTTCTTAGGAAATCTTTTAGCTAATTTCTTCTAAAGAGAATCTTTTATCGTGTTATGTATCTTCTACTGATGTATTA
AGGCCTAGGAATTTAGTAAAGGCTGACTTTTTTGTAGGTGTGATTAATCATGTAATAAGGCCTGTGACATTAAAATTTAAAATAGGAGTAGGTGAGTGCTAATTTTGTAATGAGGCCACAGTGATTAATTAAGGCCAACATGGTAGGTATAATGTGTGCTATTAATTATGTAATGAGGCTATAATCATTAAGTAATGCCA
ACTGGAACAAATGTTGCATTCGCTAGAGTGCTACCATTGGCTTGTGGAACAGGGACCAATGCCAAGTACTTTTGGAGGTCCTCAAATACCTAAGCAGAGCGCTTAATTAAACATGGATTTTCTTTTTGGCTTATTTTTGTTTTCCTAATCAACAATTGCGCGAAGAGAATTTGTAAGGGTCATTTTAGAAATCCT
Intron 2 GTACAATCCA ... TGCAAGATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.64 | 2 | 2 | 5 |
| A2 | 100 | 0 | 2 | 3 |
| A3 | 56.67 | 1 | 1 | 1.7 |
| A4 | 49.28 | 6 | 6 | 5.7 |
| A5 | 48.48 | 3 | 2 | 3.7 |
| A6 | 58.96 | 29 | 32 | 51.3 |
| A7 | 73.23 | 11.3 | 37 | 25 |
| A8 | 55.71 | 16 | 8 | 32.3 |
| A9 | 56.21 | 24 | 25.3 | 36.3 |
| A10 | 56.41 | 17 | 16 | 28 |
>TRINITY_DN43565_c0_g1_i2 from sample A6 / Example spliced isoformTCCAGCCTCCCCTTACGAAATCCACGTATACAGGCTATATAATAAAATTCAAAACGGAATCTGGGTTCTCTTGGTCTGCTCTCCTCAACTAGTGCTCCTAACTGTATGTTCGGCAAAGCACGAACAACTTAAAGCTAAGGCGATTTGTTGGTCTGTTCATTCGTCGGAGAGTCGCTTGAATTTTTTTTCGAAGTCCTACT
GCATAGAAAGCTGGAGACGTCTGTGATTGCAGAAGCAGGGCTCAATCCCTCACATGGAATCCAATATCGGCTGCCTAACAAACGCAGCACCAATTCCGCAGAGCAATTGAAGATGCATATGAGCGAGAGGATGAAGAGGATGAGCCCATATTTGTTTTAACAGATGAGTGGATGGAGTTTTTTGCTAAATCTGAGGCCAG
AAGACAAGAAAAGAAGAAAAAGCGACAGAAAGAGTTAAAGAAAATACGCAGAGCTGAGAGATCAGCACAACTGAAGCCCACTGGTGGGCTTGAAATATCGCCCTCTTTCTTGTTTGTGTCCGAAGAAGGGACATCTGCTAGTGCATTAGATGGTAGGTAAGAAGGGACTTGAAATATCACCTTCTTACTTTACATTTTTT
TTCTTTTTTCCTGAGGGAGCCTGCCACTGTCAGAATATGTATTGGTTATTCCTTTCAAAAGTCATGTGGGTATTTTTCGATTCTGATTTCATTGTATCTGTTATGCCCAAGTACGTGGCAAACCCTTAATATAATATCATCCGTTTTTATCGTTTTTAAGTTTGAAGTTTTGATCATATGTTCATCCAACAAAGCTTTTT
GTAATTTCTTCTTAGGAAATCTTTTAGCTAATTTCTTCTAAAGAGAATCTTTTATCGTGTTATGTATCTTCTACTGATGTATTAAGGCCTAGGAATTTAGTAAAGGCTGACTTTTTTGTAGGTGTGATTAATCATGTAATAAGGCCTGTGACATTAAAATTTAAAATAGGAGTAGGTGAGTGCTAATTTTGTAATGAGGC
CACAGTGATTAATTAAGGCCAACATGGTAGGTATAATGTGTGCTATTAATTATGTAATGAGGCTATAATCATTAAGTAATGCCAACTGGAACAAATGTTGCATTCGCTAGAGTGCTACCATTGGCTTGTGGAACAGGGACCAATGCCAAGTACTTTTGGAGGTCCTCAAATACCTAAGCAGAGCGCTTAATTAAACATGG
ATTTTCTTTTTGGCTTATTTTTGTTTTCCTAATCAACAATTGCGCGAAGAGAATTTGTAAGGGTCATTTTAGAAATCCT
>TRINITY_DN43565_c0_g1_i3 from sample A6 / Example unspliced isoform:TCCAGCCTCCCCTTACGAAATCCACGTATACAGGCTATATAATAAAATTCAAAACGGAATCTGGGTTCTCTTGGTCTGCTCTCCTCAACTAGTGCTCCTAACTGTATGTTCGGCAAAGCACGAACAACTTAAAGCTAAGGCGATTTGTTGGTCTGTTCATTCGTCGGAGAGTCGCTTGAATTTTTTTTCGAAGTCCTACT
GCATAAGCTGGAGACGTCTGTGATTGCAGAAGCAGGGCTCAATCCCTCACATGGAATCCAATATCGGCTGCCTAACAAACGCAGCACCAATTCCGCAGgtacaatccacaccccactctgtttgtttacatcgaccgccattttatcaatacccatttcatagttgccctcctcattactggttctctcagtcattaatg
cattctcatgccccaattcaaacccctcccaggtgtcccaattgccataaaacttatgggccacccttcattcccaatagattagcgagttcgggacaaaacaaggagattgactctgtaaatttagctataccccaaacaactccagaagaccttaaaagtaccgaacaattgtctttcagaaacctctcaaataggtc
ttcaacgccaccaaattcttcatgcgaggcaccagctaaacaagacatagataacaatgctaccccactaacaggtcaagggcctcatgttcagtctcctcgtgttcatccaccagtgagaccagctatgcattctcctgctttcccttcacccatttgcatctatcatcctttcttaccctgtagactacatggttatt
ggcatcccccactacacatgtgtcctatggctggacctgtgcctcctttctcttccatgcatcctgtatatccttcaaaatttagctatgttgaacctgagttgaatagagtgggcgcaccgcccacaaatctagcgggtacaccgacacccactgtaattggtactgcagctgagaactggcatggaaatggagattct
gaagacttgcaagatagAGCAATTGAAGATGCATATGAGCGAGAGGATGAAGAGGATGAGCCCATATTTGTTTTAACAGATGAGTGGATGGAGTTTTTTGCTAAATCTGAGGCCAGAAGACAAGAAAAGAAGAAAAAGCGACAGAAAGAGTTAAAGAAAATACGCAGAGCTGAGAGATCAGCACAACTGAAGCCCACTGG
TGGGCTTGAAATATCGCCCTCTTTCTTGTTTGTGTCCGAAGAAGGGACATCTGCTAGTGCATTAGATGGTAGGTAAGAAGGGACTTGAAATATCACCTTCTTACTTTACATTTTTTTTCTTTTTTCCTGAGGGAGCCTGCCACTGTCAGAATATGTATTGGTTATTCCTTTCAAAAGTCATGTGGGTATTTTTCGATTCT
GATTTCATTGTATCTGTTATGCCCAAGTACGTGGCAAACCCTTAATATAATATCATCCGTTTTTATCGTTTTTAAGTTTGAAGTTTTGATCATATGTTCATCCAACAAAGCTTTTTGTAATTTCTTCTTAGGAAATCTTTTAGCTAATTTCTTCTAAAGAGAATCTTTTATCGTGTTATGTATCTTCTACTGATGTATTA
AGGCCTAGGAATTTAGTAAAGGCTGACTTTTTTGTAGGTGTGATTAATCATGTAATAAGGCCTGTGACATTAAAATTTAAAATAGGAGTAGGTGAGTGCTAATTTTGTAATGAGGCCACAGTGATTAATTAAGGCCAACATGGTAGGTATAATGTGTGCTATTAATTATGTAATGAGGCTATAATCATTAAGTAATGCCA
ACTGGAACAAATGTTGCATTCGCTAGAGTGCTACCATTGGCTTGTGGAACAGGGACCAATGCCAAGTACTTTTGGAGGTCCTCAAATACCTAAGCAGAGCGCTTAATTAAACATGGATTTTCTTTTTGGCTTATTTTTGTTTTCCTAATCAACAATTGCGCGAAGAGAATTTGTAAGGGTCATTTTAGAAATCCT
Intron 3 GTGTCCCAAT ... TGCAAGATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.43 | 2 | 0 | 5 |
| A2 | 100 | 0 | 0 | 3 |
| A3 | 66.67 | 1 | 0 | 2 |
| A4 | 50 | 6 | 0 | 6 |
| A5 | 57.14 | 3 | 1 | 4 |
| A6 | 64.2 | 29 | 11 | 52 |
| A7 | 68.42 | 12 | 11 | 26 |
| A8 | 68 | 16 | 2 | 34 |
| A9 | 61.29 | 24 | 3 | 38 |
| A10 | 62.22 | 17 | 7 | 28 |
>TRINITY_DN43565_c0_g1_i2 from sample A6 / Example spliced isoformTCCAGCCTCCCCTTACGAAATCCACGTATACAGGCTATATAATAAAATTCAAAACGGAATCTGGGTTCTCTTGGTCTGCTCTCCTCAACTAGTGCTCCTAACTGTATGTTCGGCAAAGCACGAACAACTTAAAGCTAAGGCGATTTGTTGGTCTGTTCATTCGTCGGAGAGTCGCTTGAATTTTTTTTCGAAGTCCTACT
GCATAGAAAGCTGGAGACGTCTGTGATTGCAGAAGCAGGGCTCAATCCCTCACATGGAATCCAATATCGGCTGCCTAACAAACGCAGCACCAATTCCGCAGAGCAATTGAAGATGCATATGAGCGAGAGGATGAAGAGGATGAGCCCATATTTGTTTTAACAGATGAGTGGATGGAGTTTTTTGCTAAATCTGAGGCCAG
AAGACAAGAAAAGAAGAAAAAGCGACAGAAAGAGTTAAAGAAAATACGCAGAGCTGAGAGATCAGCACAACTGAAGCCCACTGGTGGGCTTGAAATATCGCCCTCTTTCTTGTTTGTGTCCGAAGAAGGGACATCTGCTAGTGCATTAGATGGTAGGTAAGAAGGGACTTGAAATATCACCTTCTTACTTTACATTTTTT
TTCTTTTTTCCTGAGGGAGCCTGCCACTGTCAGAATATGTATTGGTTATTCCTTTCAAAAGTCATGTGGGTATTTTTCGATTCTGATTTCATTGTATCTGTTATGCCCAAGTACGTGGCAAACCCTTAATATAATATCATCCGTTTTTATCGTTTTTAAGTTTGAAGTTTTGATCATATGTTCATCCAACAAAGCTTTTT
GTAATTTCTTCTTAGGAAATCTTTTAGCTAATTTCTTCTAAAGAGAATCTTTTATCGTGTTATGTATCTTCTACTGATGTATTAAGGCCTAGGAATTTAGTAAAGGCTGACTTTTTTGTAGGTGTGATTAATCATGTAATAAGGCCTGTGACATTAAAATTTAAAATAGGAGTAGGTGAGTGCTAATTTTGTAATGAGGC
CACAGTGATTAATTAAGGCCAACATGGTAGGTATAATGTGTGCTATTAATTATGTAATGAGGCTATAATCATTAAGTAATGCCAACTGGAACAAATGTTGCATTCGCTAGAGTGCTACCATTGGCTTGTGGAACAGGGACCAATGCCAAGTACTTTTGGAGGTCCTCAAATACCTAAGCAGAGCGCTTAATTAAACATGG
ATTTTCTTTTTGGCTTATTTTTGTTTTCCTAATCAACAATTGCGCGAAGAGAATTTGTAAGGGTCATTTTAGAAATCCT
>TRINITY_DN43565_c0_g1_i1 from sample A6 / Example unspliced isoform:AGCTGGAGACGTCTGTGATTGCAGAAGCAGGGCTCAATCCCTCACATGGAATCCAATATCGGCTGCCTAACAAACGCAGCACCAATTCCGCAGgtgtcccaattgccataaaacttatgggccacccttcattcccaatagattagcgagttcgggacaaaacaaggagattgactctgtaaatttagctataccccaaa
caactccagaagaccttaaaagtaccgaacaattgtctttcagaaacctctcaaataggtcttcaacgccaccaaattcttcatgcgaggcaccagctaaacaagacatagataacaatgctaccccactaacaggtcaagggcctcatgttcagtctcctcgtgttcatccaccagtgagaccagctatgcattctcct
gctttcccttcacccatttgcatctatcatcctttcttaccctgtagactacatggttattggcatcccccactacacatgtgtcctatggctggacctgtgcctcctttctcttccatgcatcctgtatatccttcaaaatttagctatgttgaacctgagttgaatagagtgggcgcaccgcccacaaatctagcggg
tacaccgacacccactgtaattggtactgcagctgagaactggcatggaaatggagattctgaagacttgcaagatagAGCAATTGAAGATGCATATGAGCGAGAGGATGAAGAGGATGAGCCCATATTTGTTTTAACAGATGAGTGGATGGAGTTTTTTGCTAAATCTGAGGCCAGAAGACAAGAAAAGAAGAAAAAGC
GACAGAAAGAGTTAAAGAAAATACGCAGAGCTGAGAGATCAGCACAACTGAAGCCCACTGGTGGGCTTGAAATATCGCCCTCTTTCTTGTTTGTGTCCGAAGAAGGGACATCTGCTAGTGCATTAGATGGTAGGTAAGAAGGGACTTGAAATATCACCTTCTTACTTTACATTTTTTTTCTTTTTTCCTGAGGGAGCCTG
CCACTGTCAGAATATGTATTGGTTATTCCTTTCAAAAGTCATGTGGGTATTTTTCGATTCTGATTTCATTGTATCTGTTATGCCCAAGTACGTGGCAAACCCTTAATATAATATCATCCGTTTTTATCGTTTTTAAGTTTGAAGTTTTGATCATATGTTCATCCAACAAAGCTTTTTGTAATTTCTTCTTAGGAAATCTT
TTAGCTAATTTCTTCTAAAGAGAATCTTTTATCGTGTTATGTATCTTCTACTGATGTATTAAGGCCTAGGAATTTAGTAAAGGCTGACTTTTTTGTAGGTGTGATTAATCATGTAATAAGGCCTGTGACATTAAAATTTAAAATAGGAGTAGGTGAGTGCTAATTTTGTAATGAGGCCACAGTGATTAATTAAGGCCAAC
ATGGTAGGTATAATGTGTGCTATTAATTATGTAATGAGGCTATAATCATTAAGTAATGCCAACTGGAACAAATGTTGCATTCGCTAGAGTGCTACCATTGGCTTGTGGAACAGGGACCAATGCCAAGTACTTTTGGAGGTCCTCAAATACCTAAGCAGAGCGCTTAATTAAACATGGATTTTCTTTTTGGCTTATTTTTG
TTTTCCTAATCAACAATTGCGCGAAGAGAATTTGTAAGGGTCATTTTAGAAATCCT