sp|Q9LZK5|DNJ19_ARATH ----> DnaJ protein ERDJ3B
Intron 1 GTATGCAAGG ... TTTTTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0.85 | 205 | 3 | 0 |
| A2 | 0.55 | 208.5 | 2 | 0 |
| A3 | 1.01 | 173 | 3 | 0 |
| A4 | 1.2 | 138.3 | 0 | 3 |
| A5 | 0 | 80.8 | 0 | 0 |
| A6 | 0 | 630 | 0 | 0 |
| A7 | 0.6 | 945.3 | 0 | 10 |
| A8 | 0.66 | 790.5 | 2 | 7 |
| A9 | 0.14 | 817 | 0 | 2 |
| A10 | 0.21 | 801.8 | 0 | 3 |
>TRINITY_DN38187_c0_g1_i1 from sample A8 / Example spliced isoformTCCCTCCCTCTTCACAAGGATTGTGTAGTCTGGAACAACGTTAAGCGACGGAGGCACAGACCAGGCGGTCGAGACGACAAGAAATACAATAGCTTGATCATATATTCCGTCAATCACCAGAGGTTTCGAATCCGAAACCCCCAATGAGGCTCGCGGGGGGTCTGCTGCTGCTGTTTCTCTTCGCAGTCTCATATTTAGAC
AGATCGATTGCTGGGAAGAATTTTTACGATGTTCTGCAAGTTCCGAAAGGTGCTTCGGAAGATCAGATAAAGAAGGCATATAGGAAACTGGCTTTGAAATATCACCCAGACAAGAACCCTGGAAACGAAGAAGCAACAAAGCGTTTTGCAGAAATTAACAATGCATATGAAGTGCTCACTGATCGTGAAAAGAGAGAAAT
TTATGATAGACATGGGGAAGAAGGTCTAAAGCAACATGCTGCTAACGGTGGCGGAAGGGGGGGAGGTGGCATGAACTTTCAAGATATTTTTGGCAGCTTCTTTGGTGGTGGTGGTGGACAAGGCGAAGAAGAAGAGGAGAAGACTGTGAAAGGGCATGATGTCATCGTTGACTTGCATGCGACTTTGGAGGATCTTTATA
TGGGGAGCTCATTAAAGGTCTGGAGGGAAAAGAATGTCGTGAAGCCAGCCCCTGGTAAGAGACAATGTAATTGCAGAAATGAGGTCTATCACAAGCAGATCGGTCCAGGAATGTTTCAGCAAATCACACAGCAGGTGTGTGAGGAGTGCCCCAATGTCAAGTATGAACGAGAAGGCGAGTTTGTTACTGTCGATATAGAG
AAGGGAATGCGAGATGGACAGGAGATAGTATTTTATGAGGATGGAGAGCCTGCTGTAGATGGAGAAGCCGGTGATCTAAAGTTTAAAATTTACACAGCACCGCATGAAAGGTTCAGAAGGGAAGGCAACGACTTACATACTACAGTTACAATTACGCTGCGGGATTCTCTTGTTGGGTTTGAGAAGAGTATCCCTCACCT
TGATGGCCATTCAGTGGCCGTTGGTTCAAAAGGAATCACCAAACCTAAAGAGGTCAGGCGCATTCGAGGAGAAGGCATGCCTGTACACCTGAGTACAAGTAAAGGGAATTTGTTCGTGACCTATGAGGTTTTGTTCCCAAGTAGTCTCACAGAAGAACAGAAAAGAAAAATCAAAGAAGTCTTTGCGTCATGATTGCATA
TTGACATATTAGAGAAACGAAAGTTTTGTCAGATTGTCAGAAATTCATATTCAAATGAGGTCTCCGTTGTATTCAACTACAGTTACATTGTATTGTTTCACCCAGGGCCCCACTTTCTGGAGTCTACTAAGGTTTTTGTACAATTGATAGCAAGCTAATATCAATTTACATTTCTTTACATACGCAGGAGCTGAGGCTAA
GTAGTAGGTAGCATCGGCTTGAATATTCAGTGATATGAACTTGTATAACACACTAAATAACCCACTATCCTCAAAAACCATACAATGCCAGGTCAACTACACAAACATATATAGCACTTACACAATACTGTATATGTAGTTCAACAATCAAGAAATCTAAAGAGTTTAAGACCGTTGTGCAACAATAATACACGCCATGA
AGATTTGTTGCCATCCAAAAATTTTCTGGAGTGTTTTCACTTTTCACTATTTCTTTTGATGACTACGTGATTCCAGAACTAATCAGTTAGACAACTTGCTTTCTTCAAGAACAAGTCTTTATCATGCTTACAGAAATGGTCGTTACAAACAAGTCCACAAATTGCAACTTTTGTCACACAGCCCGATAAACTTCTCTTTA
TGAAGAATTGACAGAATAATTTGTGTTTCCTCAATGGCAAGATTATAAATTTATTAAGGATGGCTGTAAAACAGAATTTTGTTTTATGCTGCAAATTTTACCCAAGATTATTGTTTTTTATTGTTTAATATCTTGAATAAAGGAAAATATTTCTAGGCATTACCTATACATGTAATTATTTGAACGACCG
>TRINITY_DN38187_c0_g1_i5 from sample A8 / Example unspliced isoform:GAAGGGAATGCGAGATGGACAGgtatgcaaggggattctgtttaccagcataacttctggtcttgaaatgttgtacaaggagatagattctgtttcctaatggctatttttgtaatttcgagcagacaaatgtgacttttaattcgattagtacttctgcctttggatcctatgtgcattctttcaggattttaaatgtt
tgtgggtagtttcaactttcaatctaattgcatggatttgctcacgcctttttattattattttatattgctatgatgtctttgattgttgctatatctttgtaattagacatgggagttgcattgatgaaggaggcatcttcgtactttgagcacagatgggtcataagcttgcatttatgcttgaatcctttgttcat
ttctatcactgtacattaaacctgcatctctgttctagaataatggaacatcccatatggtgcttcatgtaggttcttgaatgatcctcatggtggttaaaaatacctagattgttatgatgtccacaaatgatagaaagaatgcccattgttcaaactcattgaagagcacaagtgtttgatttgtccaatttttagcg
catgtactgttagtgtgtgtgatgtttggaaagttggttggttgctgtgcattgattgatatggttgttacttctgtggtgggtttttcgcagGAGATAGTATTTTATGAGGATGGAGAGCCTGCTGTAGATGGAGAAGCCGGTGATCTAAAGGTTTGATATTTGCTAAGAATTACTTGTAAATATTGAAGTTGTATTGA
AACTAAATTCAATTGAGACAATGTTTCTGCAGTTTAAAATTTACACAGCACCGCATGAAAGGTTCAGAAGGGAAGGCAACGACTTACATACTACAGTTACAATTACGCTGGTCAGTATGAATTTTTACATTATGCCAGTTGTTTCCTAGGATTTGAATTTGAAACCTAAATAATATGGATTACAACAATTCCCTAAGCCT
TTTCTTGACCTGGAAATAATTTTTTTTGCCATTCCATGTATCTAACTGAGGGCACTTGTAATGCAGCGGGATTCTCTTGTTGGGTTTGAGAAGAGTATCCCTCACCTTGATGGCCATTCAGTGGCCGTCGGTTCAAAAGTAAGAATGCAATCTTTCCTTTTTTATGTCTTTGCTTCTTCAGTTCATTATTTTGTTTTCTT
GGTTTGGCTCTAAAGCTTGTCTCCTATTTGTCACATAAAATATTCTTCTTAGCTGAAAGAATAGATCAGATTGAAAAAAATTCAGTAATCTAGTAACCTTGATAAATGTCATTTGATTGGGGTGCTTAGTTTTCTCAGGCACCCTCATTTATTCAGCCTATCCATCCTGATCCGAATTTATTCATTGTCAGCTTCTTTAA
GAACATGTGCTGTTTGTCTGCAGGGAATCACCAAACCTAAAGAGGT
Intron 2 GTCAGTATGA ... TGTAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0.59 | 172.7 | 1 | 0 |
| A2 | 0 | 173.3 | 0 | 0 |
| A3 | 2.3 | 174.7 | 4 | 0 |
| A4 | 2.11 | 142.3 | 3 | 0 |
| A5 | 0 | 66.7 | 0 | 0 |
| A6 | 0 | 778 | 0 | 0 |
| A7 | 0.3 | 1017.7 | 3 | 0 |
| A8 | 0.4 | 1029.7 | 4 | 1 |
| A9 | 0 | 816 | 0 | 2 |
| A10 | 0 | 790.3 | 0 | 1 |
>TRINITY_DN38187_c0_g1_i1 from sample A8 / Example spliced isoformTCCCTCCCTCTTCACAAGGATTGTGTAGTCTGGAACAACGTTAAGCGACGGAGGCACAGACCAGGCGGTCGAGACGACAAGAAATACAATAGCTTGATCATATATTCCGTCAATCACCAGAGGTTTCGAATCCGAAACCCCCAATGAGGCTCGCGGGGGGTCTGCTGCTGCTGTTTCTCTTCGCAGTCTCATATTTAGAC
AGATCGATTGCTGGGAAGAATTTTTACGATGTTCTGCAAGTTCCGAAAGGTGCTTCGGAAGATCAGATAAAGAAGGCATATAGGAAACTGGCTTTGAAATATCACCCAGACAAGAACCCTGGAAACGAAGAAGCAACAAAGCGTTTTGCAGAAATTAACAATGCATATGAAGTGCTCACTGATCGTGAAAAGAGAGAAAT
TTATGATAGACATGGGGAAGAAGGTCTAAAGCAACATGCTGCTAACGGTGGCGGAAGGGGGGGAGGTGGCATGAACTTTCAAGATATTTTTGGCAGCTTCTTTGGTGGTGGTGGTGGACAAGGCGAAGAAGAAGAGGAGAAGACTGTGAAAGGGCATGATGTCATCGTTGACTTGCATGCGACTTTGGAGGATCTTTATA
TGGGGAGCTCATTAAAGGTCTGGAGGGAAAAGAATGTCGTGAAGCCAGCCCCTGGTAAGAGACAATGTAATTGCAGAAATGAGGTCTATCACAAGCAGATCGGTCCAGGAATGTTTCAGCAAATCACACAGCAGGTGTGTGAGGAGTGCCCCAATGTCAAGTATGAACGAGAAGGCGAGTTTGTTACTGTCGATATAGAG
AAGGGAATGCGAGATGGACAGGAGATAGTATTTTATGAGGATGGAGAGCCTGCTGTAGATGGAGAAGCCGGTGATCTAAAGTTTAAAATTTACACAGCACCGCATGAAAGGTTCAGAAGGGAAGGCAACGACTTACATACTACAGTTACAATTACGCTGCGGGATTCTCTTGTTGGGTTTGAGAAGAGTATCCCTCACCT
TGATGGCCATTCAGTGGCCGTTGGTTCAAAAGGAATCACCAAACCTAAAGAGGTCAGGCGCATTCGAGGAGAAGGCATGCCTGTACACCTGAGTACAAGTAAAGGGAATTTGTTCGTGACCTATGAGGTTTTGTTCCCAAGTAGTCTCACAGAAGAACAGAAAAGAAAAATCAAAGAAGTCTTTGCGTCATGATTGCATA
TTGACATATTAGAGAAACGAAAGTTTTGTCAGATTGTCAGAAATTCATATTCAAATGAGGTCTCCGTTGTATTCAACTACAGTTACATTGTATTGTTTCACCCAGGGCCCCACTTTCTGGAGTCTACTAAGGTTTTTGTACAATTGATAGCAAGCTAATATCAATTTACATTTCTTTACATACGCAGGAGCTGAGGCTAA
GTAGTAGGTAGCATCGGCTTGAATATTCAGTGATATGAACTTGTATAACACACTAAATAACCCACTATCCTCAAAAACCATACAATGCCAGGTCAACTACACAAACATATATAGCACTTACACAATACTGTATATGTAGTTCAACAATCAAGAAATCTAAAGAGTTTAAGACCGTTGTGCAACAATAATACACGCCATGA
AGATTTGTTGCCATCCAAAAATTTTCTGGAGTGTTTTCACTTTTCACTATTTCTTTTGATGACTACGTGATTCCAGAACTAATCAGTTAGACAACTTGCTTTCTTCAAGAACAAGTCTTTATCATGCTTACAGAAATGGTCGTTACAAACAAGTCCACAAATTGCAACTTTTGTCACACAGCCCGATAAACTTCTCTTTA
TGAAGAATTGACAGAATAATTTGTGTTTCCTCAATGGCAAGATTATAAATTTATTAAGGATGGCTGTAAAACAGAATTTTGTTTTATGCTGCAAATTTTACCCAAGATTATTGTTTTTTATTGTTTAATATCTTGAATAAAGGAAAATATTTCTAGGCATTACCTATACATGTAATTATTTGAACGACCG
>TRINITY_DN38187_c0_g1_i5 from sample A8 / Example unspliced isoform:GAAGGGAATGCGAGATGGACAGGTATGCAAGGGGATTCTGTTTACCAGCATAACTTCTGGTCTTGAAATGTTGTACAAGGAGATAGATTCTGTTTCCTAATGGCTATTTTTGTAATTTCGAGCAGACAAATGTGACTTTTAATTCGATTAGTACTTCTGCCTTTGGATCCTATGTGCATTCTTTCAGGATTTTAAATGTT
TGTGGGTAGTTTCAACTTTCAATCTAATTGCATGGATTTGCTCACGCCTTTTTATTATTATTTTATATTGCTATGATGTCTTTGATTGTTGCTATATCTTTGTAATTAGACATGGGAGTTGCATTGATGAAGGAGGCATCTTCGTACTTTGAGCACAGATGGGTCATAAGCTTGCATTTATGCTTGAATCCTTTGTTCAT
TTCTATCACTGTACATTAAACCTGCATCTCTGTTCTAGAATAATGGAACATCCCATATGGTGCTTCATGTAGGTTCTTGAATGATCCTCATGGTGGTTAAAAATACCTAGATTGTTATGATGTCCACAAATGATAGAAAGAATGCCCATTGTTCAAACTCATTGAAGAGCACAAGTGTTTGATTTGTCCAATTTTTAGCG
CATGTACTGTTAGTGTGTGTGATGTTTGGAAAGTTGGTTGGTTGCTGTGCATTGATTGATATGGTTGTTACTTCTGTGGTGGGTTTTTCGCAGGAGATAGTATTTTATGAGGATGGAGAGCCTGCTGTAGATGGAGAAGCCGGTGATCTAAAGGTTTGATATTTGCTAAGAATTACTTGTAAATATTGAAGTTGTATTGA
AACTAAATTCAATTGAGACAATGTTTCTGCAGTTTAAAATTTACACAGCACCGCATGAAAGGTTCAGAAGGGAAGGCAACGACTTACATACTACAGTTACAATTACGCTGgtcagtatgaatttttacattatgccagttgtttcctaggatttgaatttgaaacctaaataatatggattacaacaattccctaagcct
tttcttgacctggaaataattttttttgccattccatgtatctaactgagggcacttgtaatgcagCGGGATTCTCTTGTTGGGTTTGAGAAGAGTATCCCTCACCTTGATGGCCATTCAGTGGCCGTCGGTTCAAAAGTAAGAATGCAATCTTTCCTTTTTTATGTCTTTGCTTCTTCAGTTCATTATTTTGTTTTCTT
GGTTTGGCTCTAAAGCTTGTCTCCTATTTGTCACATAAAATATTCTTCTTAGCTGAAAGAATAGATCAGATTGAAAAAAATTCAGTAATCTAGTAACCTTGATAAATGTCATTTGATTGGGGTGCTTAGTTTTCTCAGGCACCCTCATTTATTCAGCCTATCCATCCTGATCCGAATTTATTCATTGTCAGCTTCTTTAA
GAACATGTGCTGTTTGTCTGCAGGGAATCACCAAACCTAAAGAGGT
Intron 3 GTAAGAATGC ... TTGTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.93 | 157 | 56 | 8 |
| A2 | 14.04 | 153 | 38 | 12 |
| A3 | 15.15 | 126 | 37 | 8 |
| A4 | 18.28 | 114 | 38 | 13 |
| A5 | 18.46 | 53 | 21 | 3 |
| A6 | 15.15 | 759 | 152 | 119 |
| A7 | 15.05 | 972.3 | 233.7 | 111 |
| A8 | 14.17 | 978 | 216 | 107 |
| A9 | 16.38 | 849.3 | 211.7 | 121 |
| A10 | 15.14 | 723 | 185 | 73 |
>TRINITY_DN43574_c0_g1_i2 from sample A7 / Example spliced isoformGAAGGGAATGCGAGATGGACAGGTATGCAAGGGGATTCTGTTTACCAGCATAACTTCTGGTCTTGAAATGTTGTACAAGGAGATAGATTCTGTTTCCTAATGGCTATTTTTGTAATTTCGAGCAGACAAATGTGACTTTTAATTCGATTAGTACTTCTGCCTTTGGATCCTATGTGCATTCTTTCAGGATTTTAAATGTT
TGTGGGTAGTTTCAACTTTCAATCTAATTGCATGGATTTGCTCACGCCTTTTTTTATTATTTTATATTGCTATGATGTCTTTGATTGTTGCTATATCTTTGTAATTAGACATGGGAGTTGCATTGATGAAGGAGGCATCTTCGTACTTTGAGCACAGATGGGTCATAAGCTTGCATTTATGCTTGAATCCTTTGTTCATT
TCTATCACTGTACATTAAACCTGCATCTCTGTTCTAGAATAATGGAACATCCCATATGGTGCTTCATGTAGGTTCTTGAATGATCCTCATGGTGGTTAAAAATACCTAGATTGTTATGATGTCCACAAATGATAGAAAGAATGCCCATTGTTCAAACTCATTGAAGAGCACAAGTGTTTGATTTGTCCAATTTTTAGCGC
ATGTACTGTTAGTGTGTGTGATGTTTGGAAAGTTGGTTGGTTGCTGTGCATTGATTGATATGGTTGTTACTTCTGTGGTGGGTTTTTCGCAGGAGATAGTATTTTATGAGGATGGAGAGCCTGCTGTAGATGGAGAAGCCGGTGATCTAAAGGTTTGATATTTGCTAAGAATTACTTGTAAATATTGAAGTTGTATTGAA
ACTAAATTCAATTGAGACAATGTTTCTGCAGTTTAAAATTTACACAGCACCGCATGAAAGGTTCAGAAGGGAAGGCAACGACTTACATACTACAGTTACAATTACGCTGCGGGATTCTCTTGTTGGGTTTGAGAAGAGTATCCCTCACCTTGATGGCCATTCAGTGGCCGTTGGTTCAAAAGGAATCACCAAACCTAAAG
AGGTCAGGCGCATTCGAGGAGAAGGCATGCCTGTACACCTGAGTACAAGTAAAGGGAATTTGTTCGTGACCTATGAGGTTTTGTTCCCAAGTAGTCTCACAGAAGAACAGAAAAGAAAAATCAAAGAAGTCTTTGCGTCATGATTGCATATTGACATATTAGAGAAACGAAAGTTTTGTCAGATTGTCAGAAATTCATAT
TCAAATGAGGTCTCCGTTGTATTCAACTACAGTTACATTGTATTGTTTCACCCAGGGCCCCACTTTCTGGAGTCTACTAAGGTTTTTGTACAATTGATAGCAAGCTAATATCAATTTACATTTCTTTACATACGCAGGAGCTGAGGCTAAGTAGTAGGTAGCATCGGCTTGAATATTCAGTGATATGAACTTGTATAACA
CACTAAATAACCCACTATCCTCAAAAACCATACAATGCCAGGTCAACTACACAAACATATATAGCACTTACACAATACTGTATATGTAGTTCAACAATCAAGAAATCTAAAGAGTTTAAGACCGTTGTGCAACAATAATACACGCCATGAAGATTTGTTGCCATCCAAAAATTTTCTGGAGTGTTTTCACTTTTCACTAT
TTCTTTTGATGACTACGTGATTCCAGAACTAATCAGTTAGACAACTTGCTTTCTTCAAGAACAAGTCTTTATCATGCTTACAGAAATGGTCGTTACAAACAAGTCCACAAATTGCAACTTTTGTCACACAGCCCGATAAACTTCTCTTTATGAAGAATTGACAGAATAATTTGTGTTTCCTCAATGGCAAGATTATAAAT
TTATTAAGGATGGCTGTAAAACAGAATTTTGTTTTATGCTGCAAATTTTACCCAAGATTATTGTTTTTTATTGTTTAATATCTTGAATAAAGGAAAATATTTCTAG
>TRINITY_DN43574_c0_g1_i1 from sample A7 / Example unspliced isoform:GAAGGGAATGCGAGATGGACAGGTATGCAAGGGGATTCTGTTTACCAGCATAACTTCTGGTCTTGAAATGTTGTACAAGGAGATAGATTCTGTTTCCTAATGGCTATTTTTGTAATTTCGAGCAGACAAATGTGACTTTTAATTCGATTAGTACTTCTGCCTTTGGATCCTATGTGCATTCTTTCAGGATTTTAAATGTT
TGTGGGTAGTTTCAACTTTCAATCTAATTGCATGGATTTGCTCACGCCTTTTTTTATTATTTTATATTGCTATGATGTCTTTGATTGTTGCTATATCTTTGTAATTAGACATGGGAGTTGCATTGATGAAGGAGGCATCTTCGTACTTTGAGCACAGATGGGTCATAAGCTTGCATTTATGCTTGAATCCTTTGTTCATT
TCTATCACTGTACATTAAACCTGCATCTCTGTTCTAGAATAATGGAACATCCCATATGGTGCTTCATGTAGGTTCTTGAATGATCCTCATGGTGGTTAAAAATACCTAGATTGTTATGATGTCCACAAATGATAGAAAGAATGCCCATTGTTCAAACTCATTGAAGAGCACAAGTGTTTGATTTGTCCAATTTTTAGCGC
ATGTACTGTTAGTGTGTGTGATGTTTGGAAAGTTGGTTGGTTGCTGTGCATTGATTGATATGGTTGTTACTTCTGTGGTGGGTTTTTCGCAGGAGATAGTATTTTATGAGGATGGAGAGCCTGCTGTAGATGGAGAAGCCGGTGATCTAAAGGTTTGATATTTGCTAAGAATTACTTGTAAATATTGAAGTTGTATTGAA
ACTAAATTCAATTGAGACAATGTTTCTGCAGTTTAAAATTTACACAGCACCGCATGAAAGGTTCAGAAGGGAAGGCAACGACTTACATACTACAGTTACAATTACGCTGCGGGATTCTCTTGTTGGGTTTGAGAAGAGTATCCCTCACCTTGATGGCCATTCAGTGGCCGTTGGTTCAAAAgtaagaatgcaatctttcc
tttttatgtctttgcttcttcagttaattattttgttttcttggtttggctctaaagcttgtctcctatttgtcacataaaatattcttcttagctgaaagaatagatcagattgaaaaaaattcagtaatctagtaaccttgataaatgtcatttgattggggtgcttagttttctcaggcaccctcatttattcagcc
tatccatcctgatccgaatttattcattgtcagcttctttaagaacatgtgctgtttgtctgcagGGAATCACCAAACCTAAAGAGGTCAGGCGCATTCGAGGAGAAGGCATGCCTGTACACCTGAGTACAAGTAAAGGGAATTTGTTCGTGACCTATGAGGTTTTGTTCCCAAGTAGTCTCACAGAAGAACAGAAAAGA
AAAATCAAAGAAGTCTTTGCGTCATGATTGCATATTGACATATTAGAGAAACGAAAGTTTTGTCAGATTGTCAGAAATTCATATTCAAATGAGGTCTCCGTTGTATTCAACTACAGTTACATTGTATTGTTTCACCCAGGGCCCCACTTTCTGGAGTCTACTAAGGTTTTTGTACAATTGATAGCAAGCTAATATCAATT
TACATTTCTTTACATACGCAGGAGCTGAGGCTAAGTAGTAGGTAGCATCGGCTTGAATATTCAGTGATATGAACTTGTATAACACACTAAATAACCCACTATCCTCAAAAACCATACAATGCCAGGTCAACTACACAAACATATATAGCACTTACACAATACTGTATATGTAGTTCAACAATCAAGAAATCTAAAGAGTT
TAAGACCGTTGTGCAACAATAATACACGCCATGAAGATTTGTTGCCATCCAAAAATTTTCTGGAGTGTTTTCACTTTTCACTATTTCTTTTGATGACTACGTGATTCCAGAACTAATCAGTTAGACAACTTGCTTTCTTCAAGAACAAGTCTTTATCATGCTTACAGAAATGGTCGTTACAAACAAGTCCACAAATTGCA
ACTTTTGTCACACAGCCCGATAAACTTCTCTTTATGAAGAATTGACAGAATAATTTGTGTTTCCTCAATGGCAAGATTATAAATTTATTAAGGATGGCTGTAAAACAGAATTTTGTTTTATGCTGCAAATTTTACCCAAGATTATTGTTTTTTATTGTTTAATATCTTGAATAAAGGAAAATATTTCTAG
Intron 4 GTTTGATATT ... GTTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 8.5 | 219 | 21.9 | 16.3 |
| A2 | 8.21 | 229 | 22.5 | 13.6 |
| A3 | 7.57 | 206 | 18 | 22.6 |
| A4 | 12.03 | 146 | 21.9 | 18.6 |
| A5 | 14.88 | 81 | 14.7 | 17.7 |
| A6 | 7.24 | 787 | 65.4 | 118.4 |
| A7 | 8.14 | 1047 | 97.1 | 178.5 |
| A8 | 8.09 | 974 | 90.9 | 152.3 |
| A9 | 8.23 | 937 | 90.9 | 114.4 |
| A10 | 7.47 | 855 | 73.2 | 101.8 |
>TRINITY_DN103413_c0_g2_i1 from sample A3 / Example spliced isoformGATTGTGTAGTCTGGAACAACGTTAAGCGACGGAGGCACAGACCAGGCGGTCGAGACGACAAGAAATACAATAGCTTGATCATATATTCCGTCAATCACCAGAGGTTTCGAATCCGAAACCCCCAATGAGGCTCGCGGGGGGTCTGCTGCTGCTGTTTCTCTTCGCAGTCTCATATTTAGACAGATCGATTGCTGGGAAG
AATTTTTACGATGTTCTGCAAGTTCCGAAAGGTGCTTCGGAAGATCAGATAAAGAAGGCATATAGGAAACTGGCTTTGAAATATCACCCAGACAAGAACCCTGGAAACGAAGAAGCAACAAAGCGTTTTGCAGAAATTAACAATGCATATGAAGTGCTCACTGATCGTGAAAAGAGAGAAATTTATGATAGACATGGGGA
AGAAGGTCTAAAGCAACATGCTGCTAACGGTGGCGGAAGGGGGGGAGGTGGCATGAACTTTCAAGATATTTTTGGCAGCTTCTTTGGTGGTGGTGGTGGACAAGGCGAAGAAGAAGAGGAGAAGACTGTGAAAGGGCATGATGTCATCGTTGACTTGCATGCGACTTTGGAGGATCTTTATATGGGGAGCTCATTAAAGG
TCTGGAGGGAAAAGAATGTCGTGAAGCCAGCCCCTGGTAAGAGACAATGTAATTGCAGAAATGAGGTCTATCACAAGCAGATCGGTCCAGGAATGTTTCAGCAAATCACACAGCAGGTGTGTGAGGAGTGCCCCAATGTCAAGTATGAACGAGAAGGCGAGTTTGTTACTGTCGATATAGAGAAGGGAATGCGAGATGGA
CAGGAGATAGTATTTTATGAGGATGGAGAGCCTGCTGTAGATGGAGAAGCCGGTGATCTAAAGTTTAAAATTTACACAGCACCGCATGAAAGGTTCAGAAGGGAAGGCAACGACTTACATACTACAGTTACAATTACGCTGCGGGATTCTCTTGTTGGGTTTGAGAAGAGTATCCCTCACCTTGATGGCCATTCAGTGGC
CGTTGGTTCAAAAGGAATCACCAAACCTAAAGAGGTCAGGCGCATTCGAGGAGAAGGCATGCCTGTACACCTGAGTACAAGTAAAGGGAATTTGTTCGTGACCTATGAGGTTTTGTTCCCAAGTAGTCTCACAGAAGAACAGAAAAGAAAAATCAAAGAAGTCTTTGCGTCATGATTGCATATTGACATATTAGAGAAAC
GAAAGTTTTGTCAGATTGTCAGAAATTCATATTCAAATGAGGTCTCCGTTGTATTCAACTACAGTTACATTGTATTGTTTCACCCAGGGCCCCACTTTCTGGAGTCTACTAAGGTTTTTGTACAATTGATAGCAAGCTAATATCAATTTACATTTCTTTACATACGCAGGAGCTGAGGCTAAGTAGTAGGTAGCATCGGC
TTGAATATTCAGTGATATGAACTTGTATAACACACTAAATAACCCACTATCCTCAAAAACCATACAATGCCAGGTCAACTACACAAACATATATAGCACTTACACAATACTGTATATGTAGTTCAACAATCAAGAAATCTAAAGAGTTTAAGACCGTTGTGCAACAATAATACACGCCATGAAGATTTGTTG
>TRINITY_DN103413_c0_g2_i2 from sample A3 / Example unspliced isoform:ATGGAGAAGCCGGTGATCTAAAGgtttgatatttgctaagaattacttgtaaatattgaagttgtattgaaactaaattcaattgagacaatgtttctgcagTTTAAAATTTACACAGCACCGCATGAAAGGTTCAGAAGGGAAGGCAACGACTTACATACTACAGTTACAATTACGCTGCGGGATTCTCTTGTTGGGTT
TGAGAAGAGTATCCCTCACCTTGATGGCCATTCAGTGGCCGTTGGTTCAAAAGGAATCACCAAACCTAAAGAGGTCAGGCGCATTCGAGGAGAAGGCATGCCTGTACACCTGAGTACAAGTAAAGGGAATTTGTTCGTGACCTATGAGGTTTTGTTCCCAAGTAGTCTCACAGAAGAACAGAAAAGAAAAATCAAAGAAG
TCTTTGCGTCATGATTGCATATTGACATATTAGAGAAACGAAAGTTTTGTCAGATTGTCAGAAATTCATATTCAAATGAGGTCTCCGTTGTATTCAACTACAGTTACATTGTATTGTTTCACCCAGGGCCCCACTTTCTGGAGTCTACTAAGGTTTTTGTACAATTGATAGCAAGCTAATATCAATTTACATTTCTTTAC
ATACGCAGGAGCTGAGGCTAAGTAGTAGGTAGCATCGGCTTGAATATTCAGTGATATGAACTTGTATAACACACTAAATAACCCACTATCCTCAAAAACCATACAATGCCAGGTCAACTACACAAACATATATAGCACTTACACAATACTGTATATGTAGTTCAACAATCAAGAAATCTAAAGAGTTTAAGACCGTTGTG
CAACAATAATACACGCCATGAAGATTTGTTG
Intron 5 GTATGCAAGG ... TTTTTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0.54 | 278 | 3 | 0 |
| A2 | 0.35 | 283 | 2 | 0 |
| A3 | 0.63 | 238 | 3 | 0 |
| A4 | 0.82 | 181 | 0 | 3 |
| A5 | 0 | 106 | 0 | 0 |
| A6 | 0 | 847 | 0 | 0 |
| A7 | 0.4 | 1260 | 0 | 10 |
| A8 | 0.42 | 1063 | 2 | 7 |
| A9 | 0.09 | 1090 | 0 | 2 |
| A10 | 0.14 | 1065 | 0 | 3 |
>TRINITY_DN43574_c0_g1_i3 from sample A7 / Example spliced isoformTGAACTTCCACGTCGACAGGTAATGTGGCAAGCCTTGAACTTTAAAAGCACTCGTCCTCCCTCCCTCTTCACAAGGATTGTGTAGTCTGGAACAACGTTAAGCGACGGAGGCACAGACCAGGCGGTCGAGACGACAAGAAATACAATAGCTTGATCATATATTCCGTCAATCACCAGAGGTTTCGAATCCGAAACCCCCA
ATGAGGCTCGCGGGGGGTCTGCTGCTGCTGTTTCTCTTCGCAGTCTCATATTTAGACAGATCGATTGCTGGGAAGAATTTTTACGATGTTCTGCAAGTTCCGAAAGGTGCTTCGGAAGATCAGATAAAGAAGGCATATAGGAAACTGGCTTTGAAATATCACCCAGACAAGAACCCTGGAAACGAAGAAGCAACAAAGCG
TTTTGCAGAAATTAACAATGCATATGAAGTGCTCACTGATCGTGAAAAGAGAGAAATTTATGATAGACATGGGGAAGAAGGTCTAAAGCAACATGCTGCTAACGGTGGCGGAAGGGGGGGAGGTGGCATGAACTTTCAAGATATTTTTGGCAGCTTCTTTGGTGGTGGTGGTGGACAAGGCGAAGAAGAAGAGGAGAAGA
CTGTGAAAGGGCATGATGTCATCGTTGACTTGCATGCGACTTTGGAGGATCTTTATATGGGGAGCTCATTAAAGGTCTGGAGGGAAAAGAATGTCGTGAAGCCAGCCCCTGGTAAGAGACAATGTAATTGCAGAAATGAGGTCTATCACAAGCAGATCGGTCCAGGAATGTTTCAGCAAATCACACAGCAGGTGTGTGAG
GAGTGCCCCAATGTCAAGTATGAACGAGAAGGCGAGTTTGTTACTGTCGATATAGAGAAGGGAATGCGAGATGGACAGGAGATAGTATTTTATGAGGATGGAGAGCCTGCTGTAGATGGAGAAGCCGGTGATCTAAAGTTTAAAATTTACACAGCACCGCATGAAAGGTTCAGAAGGGAAGGCAACGACTTACATACTAC
AGTTACAATTACGCTGCGGGATTCTCTTGTTGGGTTTGAGAAGAGTATCCCTCACCTTGATGGCCATTCAGTGGCCGTTGGTTCAAAAGGAATCACCAAACCTAAAGAGGTCAGGCGCATTCGAGGAGAAGGCATGCCTGTACACCTGAGTACAAGTAAAGGGAATTTGTTCGTGACCTATGAGGTTTTGTTCCCAAGTA
GTCTCACAGAAGAACAGAAAAGAAAAATCAAAGAAGTCTTTGCGTCATGATTGCATATTGACATATTAGAGAAACGAAAGTTTTGTCAGATTGTCAGAAATTCATATTCAAATGAGGTCTCCGTTGTATTCAACTACAGTTACATTGTATTGTTTCACCCAGGGCCCCACTTTCTGGAGTCTACTAAGGTTTTTGTACAA
TTGATAGCAAGCTAATATCAATTTACATTTCTTTACATACGCAGGAGCTGAGGCTAAGTAGTAGGTAGCATCGGCTTGAATATTCAGTGATATGAACTTGTATAACACACTAAATAACCCACTATCCTCAAAAACCATACAATGCCAGGTCAACTACACAAACATATATAGCACTTACACAATACTGTATATGTAGTTCA
ACAATCAAGAAATCTAAAGAGTTTAAGACCGTTGTGCAACAATAATACACGCCATGAAGATTTGTTGCCATCCAAAAATTTTCTGGAGTGTTTTCACTTTTCACTATTTCTTTTGATGACTACGTGATTCCAGAACTAATCAGTTAGACAACTTGCTTTCTTCAAGAACAAGTCTTTATCATGCTTACAGAAATGGTCGT
TACAAACAAGTCCACAAATTGCAACTTTTGTCACACAGCCCGATAAACTTCTCTTTATGAAGAATTGACAGAATAATTTGTGTTTCCTCAATGGCAAGATTATAAATTTATTAAGGATGGCTGTAAAACAGAATTTTGTTTTATGCTGCAAATTTTACCCAAGATTATTGTTTTTTATTGTTTAATATCTTGAATAAAGG
AAAATATTTCTAG
>TRINITY_DN43574_c0_g1_i1 from sample A7 / Example unspliced isoform:GAAGGGAATGCGAGATGGACAGgtatgcaaggggattctgtttaccagcataacttctggtcttgaaatgttgtacaaggagatagattctgtttcctaatggctatttttgtaatttcgagcagacaaatgtgacttttaattcgattagtacttctgcctttggatcctatgtgcattctttcaggattttaaatgtt
tgtgggtagtttcaactttcaatctaattgcatggatttgctcacgcctttttttattattttatattgctatgatgtctttgattgttgctatatctttgtaattagacatgggagttgcattgatgaaggaggcatcttcgtactttgagcacagatgggtcataagcttgcatttatgcttgaatcctttgttcatt
tctatcactgtacattaaacctgcatctctgttctagaataatggaacatcccatatggtgcttcatgtaggttcttgaatgatcctcatggtggttaaaaatacctagattgttatgatgtccacaaatgatagaaagaatgcccattgttcaaactcattgaagagcacaagtgtttgatttgtccaatttttagcgc
atgtactgttagtgtgtgtgatgtttggaaagttggttggttgctgtgcattgattgatatggttgttacttctgtggtgggtttttcgcagGAGATAGTATTTTATGAGGATGGAGAGCCTGCTGTAGATGGAGAAGCCGGTGATCTAAAGGTTTGATATTTGCTAAGAATTACTTGTAAATATTGAAGTTGTATTGAA
ACTAAATTCAATTGAGACAATGTTTCTGCAGTTTAAAATTTACACAGCACCGCATGAAAGGTTCAGAAGGGAAGGCAACGACTTACATACTACAGTTACAATTACGCTGCGGGATTCTCTTGTTGGGTTTGAGAAGAGTATCCCTCACCTTGATGGCCATTCAGTGGCCGTTGGTTCAAAAGTAAGAATGCAATCTTTCC
TTTTTATGTCTTTGCTTCTTCAGTTAATTATTTTGTTTTCTTGGTTTGGCTCTAAAGCTTGTCTCCTATTTGTCACATAAAATATTCTTCTTAGCTGAAAGAATAGATCAGATTGAAAAAAATTCAGTAATCTAGTAACCTTGATAAATGTCATTTGATTGGGGTGCTTAGTTTTCTCAGGCACCCTCATTTATTCAGCC
TATCCATCCTGATCCGAATTTATTCATTGTCAGCTTCTTTAAGAACATGTGCTGTTTGTCTGCAGGGAATCACCAAACCTAAAGAGGTCAGGCGCATTCGAGGAGAAGGCATGCCTGTACACCTGAGTACAAGTAAAGGGAATTTGTTCGTGACCTATGAGGTTTTGTTCCCAAGTAGTCTCACAGAAGAACAGAAAAGA
AAAATCAAAGAAGTCTTTGCGTCATGATTGCATATTGACATATTAGAGAAACGAAAGTTTTGTCAGATTGTCAGAAATTCATATTCAAATGAGGTCTCCGTTGTATTCAACTACAGTTACATTGTATTGTTTCACCCAGGGCCCCACTTTCTGGAGTCTACTAAGGTTTTTGTACAATTGATAGCAAGCTAATATCAATT
TACATTTCTTTACATACGCAGGAGCTGAGGCTAAGTAGTAGGTAGCATCGGCTTGAATATTCAGTGATATGAACTTGTATAACACACTAAATAACCCACTATCCTCAAAAACCATACAATGCCAGGTCAACTACACAAACATATATAGCACTTACACAATACTGTATATGTAGTTCAACAATCAAGAAATCTAAAGAGTT
TAAGACCGTTGTGCAACAATAATACACGCCATGAAGATTTGTTGCCATCCAAAAATTTTCTGGAGTGTTTTCACTTTTCACTATTTCTTTTGATGACTACGTGATTCCAGAACTAATCAGTTAGACAACTTGCTTTCTTCAAGAACAAGTCTTTATCATGCTTACAGAAATGGTCGTTACAAACAAGTCCACAAATTGCA
ACTTTTGTCACACAGCCCGATAAACTTCTCTTTATGAAGAATTGACAGAATAATTTGTGTTTCCTCAATGGCAAGATTATAAATTTATTAAGGATGGCTGTAAAACAGAATTTTGTTTTATGCTGCAAATTTTACCCAAGATTATTGTTTTTTATTGTTTAATATCTTGAATAAAGGAAAATATTTCTAG