sp|O22558|STY8_ARATH ----> Serine/threonine-protein kinase STY8
Intron 1 GTATGTTATC ... TGTGTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.74 | 215 | 42 | 91 |
| A2 | 31.55 | 115 | 14 | 53 |
| A3 | 32.5 | 162 | 23 | 78 |
| A4 | 26.22 | 121 | 24 | 43 |
| A5 | 28.17 | 51 | 10 | 20 |
| A6 | 34.77 | 182 | 11 | 97 |
| A7 | 34.48 | 363 | 43 | 191 |
| A8 | 30.15 | 461 | 68 | 199 |
| A9 | 33.12 | 313 | 43 | 155 |
| A10 | 27.27 | 288 | 42 | 108 |
>TRINITY_DN46669_c1_g5_i2 from sample A7 / Example spliced isoformGTTTACTGTGGCGAGGCGGAACACCAAAAAACAATGGAAGGGAAAGAGGCTGCGTGCCCGCGGATGAGTTGGAGCTGAGATTCCAGCGGATATGCTGCGAATCAATTGAAATATTAGTGGCCAACGGGCTCGGACTGATCGAGCGATTGCCCGGGGGATTCGAACCCTGTATCTGCTGCTGCTGCTCTGGTTGAAGTGAT
ATTGTGAAGCAAGAAGCTTTGATTCAATAGCAGCAGCGCTTGGCGCCATGTGTCCTCCACAGTGCAGATTTTGCATATATATTTATATTTTTGTCTATATATGTCTCTGTTAATGGCCTTTAACAGCATGATTCAATGGGCTGCCCAGAGCAGGCCTCAGCACATTTAAGCCTCGGTTTTGTTTCTAGCTGCTGCTGGAT
CGTCCAGGGTTCGAATCTTGGGGACAGCGAGCTTGAATTGCTTGGCAAAGTTGGCGGTTTGTGCCGGAGGAATCATGTCCGAAGCCGAAGAGGAGAGTTCCAATTCGTTGCAGCAACGGGTGAAGTTCCTTTGCAGCTTCGGCGGCAGCATTCTGCCGCGGCCTTCTGATGGAAAGCTCCGGTATGTTGGGGGGGAAACC
CGGATTGTGTGCGTGAACAGGGATATTAGCTTTTCGGAGTTCGTCTTGAAGATGGCGGAGTTTTGCGGCGAGGATTTTATAATTAAGTATCAGCTTCCCGAGGAGGAGGACCTGGATGCCCTGGTCTCTGTGCTCTGCGACGATGATCTCGCTAACATGATGGAGGAATACGATAGGCTTGAGGCGGCGGAGGGATTCAC
GCGGCTGCGGGTTTTCCTGTTCTCGGCCGGGGAGGGTTACAATGTCTCCGCTGTCTGTATTGAAGGAGACGATGCTGATCAGAGGTATGTTGAAGCTTTAAATTCTTTGCCTGAGTCTGGTGACCCTAGAAAACAGGGTTTCGGTCAGTGGATCCATAGAGCCGAGTCCTTTAATTCCTTGAATTCTTTGAATTGTGTCT
TGCCCCCTGATAATGGAACTTGGAGCAGAGCTGAGTCCTTTAGTTCCTTGAGTTCCTTGAATTGTGTTGTACCGCCCGATAATGGATCCATACCCAGGAGGATTCGGATTCCTCATCAGGTCGGTGTTAATGTTAATTCTCCCAGGCAACAGCTCATGCATGGCCAGTCCCCACCGATGTCGCCTCTGGGCCATCCCCGC
CAACCTTTGTCTCCCCTGAGGCATGCTCCGCAGCCAGCAGCAGCTTCTTTTCAGTTAGAAGAGCCCGAGGTCTACCATCATGAGCAGCCCTGGACATTAGGGAGCCTTCTGCGTGCTCAGGATTTGATGTGTTCGGGTTCTACTGGTTCGCATGTTTCCTATTGGGATTCTATGAAGGGTCATTCTGAAGATATGCACCC
TGCTGCTGAAGATAATTTCAGCAGGATGCAGATGAATCATGAGCACAGTATGAAAGTTTTCCCAGCGAACGAAAATTACGGAGGAAACTCAAACTCGCAAGACTTGAATAGCCCGAGAGGTAGGATTGAAGTTGGCAATCATTGGCCTGAAGATAAACCTGCCCCTCTTGATATCTTGTCTTGCCAACCTCTTGCCCACC
ATGGTCCTCCGAACATGCATCTCTTCCACCAGGCTGCTGCTGATTACCATCCAACCGATGTGCCTATAGTTCCTCCTGAATTCGCCTCCATGAAACCACCGCAGAGAAATCTTGCTAGTCCCCGAACCATGTCTAACAGCAGATTGTCTGAAAGTTTAGAATGGAATGAGAATAGCCCGAGAGGTAGGATTGAAGTTGGC
AATCATTGGCCTGAAGATAAACCTGCCCCTGCTGATATCTTGTCTTGCCAGCCTCTTGCCCATCACGGTCCTCAGAACATGCATCTCCTGCACCATGCTGCTGCTGAGTACCATCCAACCGATGTGCCTATGGTTCCTTCTGAATTCGCCACCCCAAAACTACCACAGAGAAATCTTGCTATTCCCCGAACCATGTCTAA
CAGCAGATTGTCTGAAAGTTTAGAATGGAATGAAGCGCAGCATCTGTCTCCTCGACACATGCCCTATCATGCAGCAAGCCTTCCAATGACTCGTGATGAAGTTGACCGTGAATTTGCCTGCTCAAGGCTGTCACAAGGAAAACCTGTGATGCGGAGCAGAATATATGACGGTCTAGGACGAAATGAAATACAGCGTCCCA
TGGATGATGACGAAATTGACTGGAATTTAGAAAGGCAGAAGTATATTCAAGCAGTTTGGAGTCACAATGGTGGTTTCCCCGAGGTTAAAGAAAGAAAACTTGATCACAGCAACATCCAACCAGCTGGACATTTTGAACCTCGAAATTCTCTTCCAAATCATTGCTGTCATTTACCCGATGACAGGCATGTTACATGGCAT
TGCAAGCCTTCAAATGCCAATGAAGAGTTAGGGTTGACAGGTCAAAATATAAAGCATGCACAGGGAATGTTCGAGGGGAACTCTGTATTTGAAAGCCACTATGATAGGCAAGGTATATCTGAGGTAAGAAGTCCAGTTAAACACTGTGAACAGATGACATCGTATCAGGACAAACATGGATCAAGCCGGCTAGAAGCCCA
GATTCATAATCCCCACTATATGGTCATGGAAGGCTTGCCAATGCAAAATGGAAGTGTTAAAGGGGATCAGCCAGTACCCTGTATGGATAATATTCGTACTCATATTGGCTATGAGGAGAGGTTAGACAGAGCAAGGACCTGGGTTCTGAATTCAAGAGATACAAAATATACAACTTTTGGAGGAACGCCACCTGAAGTTC
TTACCAGAGAAGAAGTTATATGCAGAGATGGGTGTCAAACCCATTGCTCTGGGCATGATTCTGGAGGTTGTTACGGGTTTAAGTCAGATGTATCCTACCATGAGCCATCTGGTGATTTGTACAAGCATGCTACTGCTAATCAAGTTGAGACTTCTACACGTGTACTGCCTAATCAACAACATAGGGTCAATGAAAATCAT
TTAGAGGGTGTCTCAGTATTTCATTTGGGGTCCAGTTATGGGCAAAGCCATTGGGGTTATAGTTCGGCAGACGAAACGAGACAGGGGGTTGCTCCAGCTAAAAGCAATGTCGAGAACCCAGAAATGCCACGGCATTCTTACATATCTTATGAAATAAATGCAGCAGATACACGCAATGCTCCACTCTACATGCCAGATAA
CCTTTCACGAAAAGAGATTGAAAACACCTCGGGATATGATGGAGATCTGCACAAAGAATTTAATCAAGATTTGAGCTCAAAGATCACTGAGGAGATGAAATGTGTTGAGTCTGCCAATGTTCCATCTCATCGCCAGATGCCCAGGCAGCCTGGAATGCTTACTGAACAGGCTTCTGATGCATTTGTTAATTTGGAAAGCA
ATGACACTATATCTAACAGTGCCTGTTCTCATCCTCGGACCTCATCAAGGCTCTTCTTACCTGATAGCCTTACTCTTTCATCATCACCTGAAGTCTTATTATCTGCATTATCTTCTTCACATCCAAGAAGCAGTAACCTAAACTCCACTGGTCCTCCAGTGTATGACCAAAGTCCAGCAAGTAGCGTTAACATTACTGGG
CCAGAGGAATTATTGATAGAAAATGAAAGAGGAAGGCAATGCAATGATCCAGAAAAGCCTGAGACAAAGGATTTCCAAATTGGACAGTCGACAGAGAAATTTGCTTCAGACATGGGTGTTAGAAATGATGAAAATTTGGGGAAGAGGATGCTTGACAATTGTTTGAAGGATAAGTCAGAGGTGGATCTTTCTGGAAAATC
CACAAATAAAAAATCAGCAGGGCAGAGTTCTAGTTTGTCATGTTCACCCATTACTTCAACAACTAAGTATGAAGAGAAACAGGTCTCTACTGCAAGTGCAAAAGGAGAAGATTGTAAGGAGTCAAAGCATAAATCTGTGACTCTGGGGTTGGTTGCAGAAGACAGCTTACCAGAGAAAAGAGCTTCAGTGGAAAATCCTT
TAGAATTAGTTGAAGACTTCGAAAAAGGTTCTGTGGACATGGCAAAGAATAATTCTTTAGTCCCTGAGGCACATGCTCTTGCCCAAGGGTTGCAGACAATAAAAAATGACGACTTAGAAGAAATACGAGAGCTGGGTTCGGGTACATATGGAACTGTTTATTATGGAAAATGGAAAGGATCAGATGTTGCCATTAAGCGG
ATAAAAGCCAGTTGTTTTACAGGAAGTCTGCCAGAGCAAGAACGAATGAGAGGAGACTTCTGGAGAGAGGCAAGTATTTTAGGTCAATTGCACCATCCCAATGTTGTGGCTTTCTATGGCATAGTTGTAGATGGTCCAGATGGGACTCTGGCAACTGTCACAGAGTATATGGTGAATGGATCTCTCAAGCAAGTTCTAAA
CAAGAAGGACAGAACAATTGATCGACGCAAAAGACTCTTTATAGCCCGTGATGCTGCATGTGGTATGCAATATTTGCATGAAAAGAACATTGTCCACTTTGATTTGAAGTGTGATAATCTTTTGGTTAATATGAGAGATCCTCATCGACCCATTTGCAAGATTGGTGATCTGGGCTTATCAAAGATAAAACAAAGAACAT
TGGTGTCTGCTGGTGTTCGGGGAACTTTGCCATGGATGGCACCAGAGCTTCTAAGTGGAAAAAGTGGCATGGTGACTGATAAGGTTGATGTATATTCATTTGGAATAGTCATGTGGGAACTCCTCACAGGAGAAGAGCCTTATGCAAAAATGCACTGTGGTGAAATAATAGGAGGTATCATGAGTAATACATTGCGTCCC
CCAATTCCAAGTTGGTGCGAGCCTAGTTGGAGATCTTTGATGGAAAGGTGTTGGTCATCTGACCCAGGACAGAGACCTTCCTTTACAGAAATTGCTACAGAATTAAGGACAATGGGTGAAGCAATGAATCTAAAATAAAGGGGCCAGTCTGGTAAATAAGATTGCAAGCCAAGCCTCAAAATATTAGTTTCATTCCATAG
ACCTGTTCTAGTGCTTGATAGCCCAGTCAATCCAGAAATGAGACGAGCTATCCTTGTTTCAGAAGCTACATAGTAAGTTGAAGGGTTGCGGGGAGCCCCTTTGGATGGCTTTGGTGAATGCAGAAAATGCCCCCTTTTTTGAGTTTGTTTTGCAAATATTGATAAAGAGTATCCTACACTACCAGTCTGAAGGTATACTG
CATATAGACACCTAGTTCATATCAGCATACAAAAACTGTTAAACATACATCTATTCAGTTGGCTTGTTGGGCAAGGAGTAGAGAAGGATTTTTCCATACTACTATACAAGATGATATCTTGTAGAGGTGTATTTTTTACGAGTGTATGTTCCTTGACACTAGACAGGGAAAGCATAATCTTAAGCCCATTGTATCATGTA
AGAGATGGGTTATTGGTATGGTTGGGAAATGAGGATTGATGTGGTGTAGATGTTTTGTCGGTGGTTGCAGATCGAGAGGAAACACGAAACTGTTCCTCCACAAATACCATCCAAACCATAAGTCCACAAATGAGATCTAATTCCTAGCTTAATAGTAGGTGTTGAAATATAGAAGGTTTGGCTCTTAATTTTTTAGGTCA
TAGTGGTAATGTGAAAGGTGTGTCAACACGGCCATTTTACCGCTATTTTAACAGTTTTGAAGGCAACCAATATGCCTTGTTTATATCAAGTCAAGATATTAGTTAAATTGGTATAGAAGTCAACACCAAAAGTTCGGTCAATTATGTCTAGCAAGTTGCTAGTGTTCCCTCCTTCCAAAAACTGCTATGATTTATTGTAG
AGGCAGAAGTATGTATATTTCTTATTCTTTGAAATGCACGGGAGTTTTCTTTCTTCAATATAGTGTTGA
>TRINITY_DN46669_c1_g5_i1 from sample A7 / Example unspliced isoform:GTTTACTGTGGCGAGGCGGAACACCAAAAAACAATGGAAGGGAAAGAGGCTGCGTGCCCGCGGATGAGTTGGAGCTGAGATTCCAGCGGATATGCTGCGAATCAATTGAAATATTAGTGGCCAACGGGCTCGGACTGATCGAGCGATTGCCCGGGGGATTCGAACCCTGTATCTGCTGCTGCTGCTCTGGTTGAAGTGAT
ATTGTGAAGCAAGAAGCTTTGATTCAATAGCAGCAGCGCTTGGCGCCATGTGTCCTCCACAGTGCAGATTTTGCATATATATTTATATTTTTGTCTATATATGTCTCTGTTAATGGCCTTTAACAGCATGATTCAATGGGCTGCCCAGAGCAGGCCTCAGCACATTTAAGCCTCGGTTTTGTTTCTAGCTGCTGCTGGAT
CGTCCAGGGTTCGAATCTTGGGGACAGCGAGCTTGAATTGCTTGGCAAAGTTGGCGGTTTGTGCCGGAGGAATCATGTCCGAAGCCGAAGAGGAGAGTTCCAATTCGTTGCAGCAACGGGTGAAGTTCCTTTGCAGCTTCGGCGGCAGCATTCTGCCGCGGCCTTCTGATGGAAAGCTCCGGTATGTTGGGGGGGAAACC
CGGATTGTGTGCGTGAACAGGGATATTAGCTTTTCGGAGTTCGTCTTGAAGATGGCGGAGTTTTGCGGCGAGGATTTTATAATTAAGTATCAGCTTCCCGAGGAGGAGGACCTGGATGCCCTGGTCTCTGTGCTCTGCGACGATGATCTCGCTAACATGATGGAGGAATACGATAGGCTTGAGGCGGCGGAGGGATTCAC
GCGGCTGCGGGTTTTCCTGTTCTCGGCCGGGGAGGGTTACAATGTCTCCGCTGTCTGTATTGAAGGAGACGATGCTGATCAGAGGTATGTTGAAGCTTTAAATTCTTTGCCTGAGTCTGGTGACCCTAGAAAACAGGGTTTCGGTCAGTGGATCCATAGAGCCGAGTCCTTTAATTCCTTGAATTCTTTGAATTGTGTCT
TGCCCCCTGATAATGGAACTTGGAGCAGAGCTGAGTCCTTTAGTTCCTTGAGTTCCTTGAATTGTGTTGTACCGCCCGATAATGGATCCATACCCAGGAGGATTCGGATTCCTCATCAGGTCGGTGTTAATGTTAATTCTCCCAGGCAACAGCTCATGCATGGCCAGTCCCCACCGATGTCGCCTCTGGGCCATCCCCGC
CAACCTTTGTCTCCCCTGAGGCATGCTCCGCAGCCAGCAGCAGCTTCTTTTCAGTTAGAAGAGCCCGAGGTCTACCATCATGAGCAGCCCTGGACATTAGGGAGCCTTCTGCGTGCTCAGGATTTGATGTGTTCGGGTTCTACTGGTTCGCATGTTTCCTATTGGGATTCTATGAAGGGTCATTCTGAAGATATGCACCC
TGCTGCTGAAGATAATTTCAGCAGGATGCAGATGAATCATGAGCACAGTATGAAAGTTTTCCCAGCGAACGAAAATTACGGAGGAAACTCAAACTCGCAAGACTTGAATAGCCCGAGAGGTAGGATTGAAGTTGGCAATCATTGGCCTGAAGATAAACCTGCCCCTCTTGATATCTTGTCTTGCCAACCTCTTGCCCACC
ATGGTCCTCCGAACATGCATCTCTTCCACCAGGCTGCTGCTGATTACCATCCAACCGATGTGCCTATAGTTCCTCCTGAATTCGCCTCCATGAAACCACCGCAGAGAAATCTTGCTAGTCCCCGAACCATGTCTAACAGCAGATTGTCTGAAAGTTTAGAATGGAATGAGAATAGCCCGAGAGGTAGGATTGAAGTTGGC
AATCATTGGCCTGAAGATAAACCTGCCCCTGCTGATATCTTGTCTTGCCAGCCTCTTGCCCATCACGGTCCTCAGAACATGCATCTCCTGCACCATGCTGCTGCTGAGTACCATCCAACCGATGTGCCTATGGTTCCTTCTGAATTCGCCACCCCAAAACTACCACAGAGAAATCTTGCTATTCCCCGAACCATGTCTAA
CAGCAGATTGTCTGAAAGTTTAGAATGGAATGAAGCGCAGCATCTGTCTCCTCGACACATGCCCTATCATGCAGCAAGCCTTCCAATGACTCGTGATGAAGTTGACCGTGAATTTGCCTGCTCAAGGCTGTCACAAGGAAAACCTGTGATGCGGAGCAGAATATATGACGGTCTAGGACGAAATGAAATACAGCGTCCCA
TGGATGATGACGAAATTGACTGGAATTTAGAAAGGCAGAAGTATATTCAAGCAGTTTGGAGTCACAATGGTGGTTTCCCCGAGGTTAAAGAAAGAAAACTTGATCACAGCAACATCCAACCAGCTGGACATTTTGAACCTCGAAATTCTCTTCCAAATCATTGCTGTCATTTACCCGATGACAGGCATGTTACATGGCAT
TGCAAGCCTTCAAATGCCAATGAAGAGTTAGGGTTGACAGGTCAAAATATAAAGCATGCACAGGGAATGTTCGAGGGGAACTCTGTATTTGAAAGCCACTATGATAGGCAAGGTATATCTGAGGTAAGAAGTCCAGTTAAACACTGTGAACAGATGACATCGTATCAGGACAAACATGGATCAAGCCGGCTAGAAGCCCA
GATTCATAATCCCCACTATATGGTCATGGAAGGCTTGCCAATGCAAAATGGAAGTGTTAAAGGGGATCAGCCAGTACCCTGTATGGATAATATTCGTACTCATATTGGCTATGAGGAGAGGTTAGACAGAGCAAGGACCTGGGTTCTGAATTCAAGAGATACAAAATATACAACTTTTGGAGGAACGCCACCTGAAGTTC
TTACCAGAGAAGAAGTTATATGCAGAGATGGGTGTCAAACCCATTGCTCTGGGCATGATTCTGGAGGTTGTTACGGGTTTAAGTCAGATGTATCCTACCATGAGCCATCTGGTGATTTGTACAAGCATGCTACTGCTAATCAAGTTGAGACTTCTACACGTGTACTGCCTAATCAACAACATAGGGTCAATGAAAATCAT
TTAGAGGGTGTCTCAGTATTTCATTTGGGGTCCAGTTATGGGCAAAGCCATTGGGGTTATAGTTCGGCAGACGAAACGAGACAGGGGGTTGCTCCAGCTAAAAGCAATGTCGAGAACCCAGAAATGCCACGGCATTCTTACATATCTTATGAAATAAATGCAGCAGATACACGCAATGCTCCACTCTACATGCCAGATAA
CCTTTCACGAAAAGAGATTGAAAACACCTCGGGATATGATGGAGATCTGCACAAAGAATTTAATCAAGATTTGAGCTCAAAGATCACTGAGGAGATGAAATGTGTTGAGTCTGCCAATGTTCCATCTCATCGCCAGATGCCCAGGCAGCCTGGAATGCTTACTGAACAGGCTTCTGATGCATTTGTTAATTTGGAAAGCA
ATGACACTATATCTAACAGTGCCTGTTCTCATCCTCGGACCTCATCAAGGCTCTTCTTACCTGATAGCCTTACTCTTTCATCATCACCTGAAGTCTTATTATCTGCATTATCTTCTTCACATCCAAGAAGCAGTAACCTAAACTCCACTGGTCCTCCAGTGTATGACCAAAGTCCAGCAAGTAGCGTTAACATTACTGGG
CCAGAGGAATTATTGATAGAAAATGAAAGAGGAAGGCAATGCAATGATCCAGAAAAGCCTGAGACAAAGGATTTCCAAATTGGACAGTCGACAGAGAAATTTGCTTCAGACATGGGTGTTAGAAATGATGAAAATTTGGGGAAGAGGATGCTTGACAATTGTTTGAAGGATAAGTCAGAGGTGGATCTTTCTGGAAAATC
CACAAATAAAAAATCAGCAGGGCAGAGTTCTAGTTTGTCATGTTCACCCATTACTTCAACAACTAAGTATGAAGAGAAACAGGTCTCTACTGCAAGTGCAAAAGGAGAAGATTGTAAGGAGTCAAAGCATAAATCTGTGACTCTGGGGTTGGTTGCAGAAGACAGCTTACCAGAGAAAAGAGCTTCAGTGGAAAATCCTT
TAGAATTAGTTGAAGACTTCGAAAAAGGTTCTGTGGACATGGCAAAGAATAATTCTTTAGTCCCTGAGGCACATGCTCTTGCCCAAGGGTTGCAGACAATAAAAAATGACGACTTAGAAGAAATACGAGAGCTGGGTTCGGGTACATATGGAACTGTTTATTATGGAAAATGGAAAGGATCAGATGTTGCCATTAAGCGG
ATAAAAGCCAGTTGTTTTACAGGAAGTCTGCCAGAGCAAGAACGAATGAGAGGAGACTTCTGGAGAGAGGCAAGTATTTTAGGTCAATTGCACCATCCCAATGTTGTGGCTTTCTATGGCATAGTTGTAGATGGTCCAGATGGGACTCTGGCAACTGTCACAGAGTATATGGTGAATGGATCTCTCAAGCAAGTTCTAAA
CAAGAAGGACAGAACAATTGATCGACGCAAAAGACTCTTTATAGCCCGTGATGCTGCATGTGGTATGCAATATTTGCATGAAAAGAACATTGTCCACTTTGATTTGAAGTGTGATAATCTTTTGGTTAATATGAGAGATCCTCATCGACCCATTTGCAAGATTGGTGATCTGGGCTTATCAAAGATAAAACAAAGAACAT
TGGTGTCTGCTGGTGTTCGGGGAACTTTGCCATGGATGGCACCAGAGCTTCTAAGTGGAAAAAGTGGCATGGTGACTGATAAGgtatgttatcattacgattcatgtttattgttgtttaaagtttgctggttgcagtgattttcatcattagcgttttatcctccagtcttcatcatcaagctgttgtgttacagGTTG
ATGTATATTCATTTGGAATAGTCATGTGGGAACTCCTCACAGGAGAAGAGCCTTATGCAAAAATGCACTGTGGTGAAATAATAGGAGGTATCATGAGTAATACATTGCGTCCCCCAATTCCAAGTTGGTGCGAGCCTAGTTGGAGATCTTTGATGGAAAGGTGTTGGTCATCTGACCCAGGACAGAGACCTTCCTTTACA
GAAATTGCTACAGAATTAAGGACAATGGGTGAAGCAATGAATCTAAAATAAAGGGGCCAGTCTGGTAAATAAGATTGCAAGCCAAGCCTCAAAATATTAGTTTCATTCCATAGACCTGTTCTAGTGCTTGATAGCCCAGTCAATCCAGAAATGAGACGAGCTATCCTTGTTTCAGAAGCTACATAGTAAGTTGAAGGGTT
GCGGGGAGCCCCTTTGGATGGCTTTGGTGAATGCAGAAAATGCCCCCTTTTTTGAGTTTGTTTTGCAAATATTGATAAAGAGTATCCTACACTACCAGTCTGAAGGTATACTGCATATAGACACCTAGTTCATATCAGCATACAAAAACTGTTAAACATACATCTATTCAGTTGGCTTGTTGGGCAAGGAGTAGAGAAGG
ATTTTTCCATACTACTATACAAGATGATATCTTGTAGAGGTGTATTTTTTACGAGTGTATGTTCCTTGACACTAGACAGGGAAAGCATAATCTTAAGCCCATTGTATCATGTAAGAGATGGGTTATTGGTATGGTTGGGAAATGAGGATTGATGTGGTGTAGATGTTTTGTCGGTGGTTGCAGATCGAGAGGAAACACGA
AACTGTTCCTCCACAAATACCATCCAAACCATAAGTCCACAAATGAGATCTAATTCCTAGCTTAATAGTAGGTGTTGAAATATAGAAGGTTTGGCTCTTAATTTTTTAGGTCATAGTGGTAATGTGAAAGGTGTGTCAACACGGCCATTTTACCGCTATTTTAACAGTTTTGAAGGCAACCAATATGCCTTGTTTATATC
AAGTCAAGATATTAGTTAAATTGGTATAGAAGTCAACACCAAAAGTTCGGTCAATTATGTCTAGCAAGTTGCTAGTGTTCCCTCCTTCCAAAAACTGCTATGATTTATTGTAGAGGCAGAAGTATGTATATTTCTTATTCTTTGAAATGCACGGGAGTTTTCTTTCTTCAATATAGTGTTGA
Intron 2 GTGGATATCT ... TCTCTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.63 | 270 | 98 | 26.5 |
| A2 | 32.25 | 251 | 119.5 | 10 |
| A3 | 31.49 | 235 | 108 | 12 |
| A4 | 26.48 | 211 | 76 | 13 |
| A5 | 30.66 | 95 | 42 | 9.5 |
| A6 | 28.87 | 138 | 56 | 9.5 |
| A7 | 25.62 | 479 | 165 | 23 |
| A8 | 27.38 | 402 | 151.5 | 28.5 |
| A9 | 25.36 | 409 | 139 | 12 |
| A10 | 25.58 | 480 | 165 | 19 |
>TRINITY_DN112509_c0_g1_i4 from sample A1 / Example spliced isoformCGGAACACCAAAAAACAATGGAAGGGAAAGAGGCTGCGTGCCCGCGGATGAGTTGGAGCTGAGATTCCAGCGGATATGCTGCGAATCAATTGAAATATTAGTGGCCAACGGGCTCGGACTGATCGAGCGATTGCCCGGGGGATTCGAACCCTGTATCTGCTGCTGCTGCTCTGGTTGAAGTGATATTGTGAAGCAAGAAG
CTTTGATTCAATAGCAGCAGCGCTTGGCGCCATGTGTCCTCCACAGTGCAGATTTTGCATATATATTTATATTTTTGTCTATATATGTCTCTGTTAATGGCCTTTAACAGCATGATTCAATGGGCTGCCCAGAGCAGGCCTCAGCACATTTAAGCCTCGGTTTTGTTTCTAGCTGCTGCTGGATCGTCCAGGGTTCGAAT
CTTGGGGACAGCGAGCTTGAATTGCTTGGCAAAGTTGGCGGTTTGTGCCGGAGGAATCATGTCCGAAGCCGAAGAGGAGAGTTCCAATTCGTTGCAGCAACGGGTGAAGTTCCTTTGCAGCTTCGGCGGCAGCATTCTGCCGCGGCCTTCTGATGGGAAGCTCCGGTATGTTGGGGGGGAAACCCGGATTGTGTGCGTGA
ACAGGGATATTAGCTTTTCGGAGTTCGTCTTGAAGATGGCGGAGTTTTGCGGCGAGGATTTTATAATTAAGTATCAGCTTCCCGAGGAGGAGGACCTGGATGCCCTGGTCTCTGTGCTCTGCGACGATGATCTCGCTAACATGATGGAGGAATACGATAGGCTTGAGGCGGCGGAGGGATTCACGCGGCTGCGGGTTTTC
CTGTTCTCGGCCGGGGAGGGTTACAATGTCTCCGCTGTCTGTATTGAAGGAGACGATGCTGATCAGAGGTATGTTGAAGCTTTAAATTCTTTGCCTGAGTCTGGTGACCCTAGAAAACAGGGTTTCGGTCAGTGGATCCATAGAGCCGAGTCCTTTAATTCCTTGAATTCTTTGAATTGTGTCTTGCCCCCTGATAATGG
AACTTGGAGCAGAGCTGAGTCCTTTAGTTCCTTGAGTTCCTTGAATTGTGTTGTACCGCCCGATAATGGATCCATACCCAGGAGGATTCGGATTCCTCATCAGGTCGGTGTTAATGTTAATTCTCCCAGGCAACAGCTCATGCATGGCCAGTCCCCACCGATGTCGCCTCTGGGCCATCCCCGCCAACCTTTGTCTCCCC
TGAGGCATGCTCCGCAGCCAGCAGCAGCTTCTTTTCAGTTAGAAGAGCCCGAGGTCTACCATCATGAGCAGCCCTGGACATTAGGGAGCCTTCTGCGTGCTCAGGATTTGATGTGTTCGGGTTCTACTGGTTCGCATGTTTCCTATTGGGATTCTATGAAGGGTCATTCTGAAGATATGCACCCTGCTGCTGAAGATAAT
TTCAGCAGGATGCAGATGAATCATGAGCACAGTATGAAAGTTTTCCCAGCGAACGAAAATTACGGAGGAAACTCAAACTCGCAAGACTTGAATAGCCCGAGAGGTAGGATTGAAGTTGGCAATCATTGGCCTGAAGATAAACCTGCCCCTCTTGATATCTTGTCTTGCCAACCTCTTGCCCACCATGGTCCTCCGAACAT
GCATCTCTTCCACCAGGCTGCTGCTGATTACCATCCAACCGATGTGCCTATAGTTCCTCCTGAATTCGCCTCCATGAAACCACCGCAGAGAAATCTTGCTAGTCCCCGAACCATGTCTAACAGCAGATTGTCTGAAAGTTTAGAATGGAATGAGAATAGCCCGAGAGGTAGGATTGAAGTTGGCAATCATTGGCCTGAAG
ATAAACCTGCCCCTGCTGATATCTTGTCTTGCCAGCCTCTTGCCCATCACGGTCCTCAGAACATGCATCTCCTGCACCATGCTGCTGCTGAGTACCATCCAACCGATGTGCCTATGGTTCCTTCTGAATTCGCCACCCCAAAACTACCACAGAGAAATCTTGCTATTCCCCGAACCATGTCTAACAGCAGATTGTCTGAA
AGTTTAGAATGGAATGAAGCGCAGCATCTGTCTCCTCGACACATGCCCTATCATGCAGCAAGCCTTCCAATGACTCGTGATGAAGTTGACCGTGAATTTGCCTGCTCAAGGCTGTCACAAGGAAAACCTGTGATGCGGAGCAGAATATATGACGGTCTAGGACGAAATGAAATACAGCGTCCCATGGATGATGACGAAAT
TGACTGGAATTTAGAAAGGCAGAAGTATATTCAAGCAGTTTGGAGTCACAATGGTGGTTTCCCCGAGGTTAAAGAAAGAAAACTTGATCACAGCAACATCCAACCAGCTGGACATTTTGAACCTCGAAATTCTCTTCCAAATCATTGCTGTCATTTACCCGATGACAGGCATGTTACATGGCATTGCAAGCCTTCAAATG
CCAATGAAGAGTTAGGGTTGACAGGTCAAAATATAAAGCATGCACAGGGAATGTTCGAGGGGAACTCTGTATTTGAAAGCCACTATGATAGGCAAGGTATATCTGAGGTAAGAAGTCCAGTTAAACACTGTGAACAGATGACATCGTATCAGGACAAACATGGATCAAGCCGGCTAGAAGCCCAGATTCATAATCCCCAC
TATATGGTCATGGAAGGCTTGCCAATGCAAAATGGAAGTGTTAAAGGGGATCAGCCAGTACCCTGTATGGATAATATTCGTACTCATATTGGCTATGAGGAGAGGTTAGACAGAGCAAGGACCTGGGTTCTGAATTCAAGAGATACAAAATATACAACTTTTGGAGGAACGCCACCTGAAGTTCTTACCAGAGAAGAAGT
TATATGCAGAGATGGGTGTCAAACCCATTGCTCTGGGCATGATTCTGGAGGTTGTTACGGGTTTAAGTCAGATGTATCCTACCATGAGCCATCTGGTGATTTGTACAAGCATGCTACTGCTAATCAAGTTGAGACTTCTACACGTGTACTGCCTAATCAACAACATAGGGTCAATGAAAATCATTTAGAGGGTGTCTCAG
TATTTCATTTGGGGTCCAGTTATGGGCAAAGCCATTGGGGTTATAGTTCGGCAGACGAAACGAGACAGGGGGTTGCTCCAGCTAAAAGCAATGTCGAGAACCCAGAAATGCCACGGCATTCTTACATATCTTATGAAATAAATGCAGCAGATACACGCAATGCTCCACTCTACATGCCAGATAACCTTTCACGAAAAGAG
ATTGAAAACACCTCGGGATATGATGGAGATCTGCACAAAGAATTTAATCAAGATTTGAGCTCAAAGATCACTGAGGAGATGAAATGTGTTGAGTCTGCCAATGTTCCATCTCATCGCCAGATGCCCAGGCAGCCTGGAATGCTTACTGAACAGGCTTCTGATGCATTTGTTAATTTGGAAAGCAATGACACTATATCTAA
CAGTGCCTGTTCTCATCCTCGGACCTCATCAAGGCTCTTCTTACCTGATAGCCTTACTCTTTCATCATCACCTGAAGTCTTATTATCTGCATTATCTTCTTCACATCCAAGAAGCAGTAACCTAAACTCCACTGGTCCTCCAGTGTATGACCAAAGTCCAGCAAGTAGCGTTAACATTACTGGGCCAGAGGAATTATTGA
TAGAAAATGAAAGAGGAAGGCAATGCAATGATCCAGAAAAGCCTGAGACAAAGGATTTCCAAATTGGACAGTCGACAGAGAAATTTGCTTCAGACATGGGTGTTAGAAATGATGAAAATTTGGGGAAGAGGATGCTTGACAATTGTTTGAAGGATAAGTCAGAGGTGGATCTTTCTGGAAAATCCACAAATAAAAAATCA
GCAGGGCAGAGTTCTAGTTTGTCATGTTCACCCATTACTTCAACAACTAAGTATGAAGAGAAACAGGTCTCTACTGCAAGTGCAAAAGGAGAAGATTGTAAGGAGTCAAAGCATAAATCTGTGACTCTGGGGTTGGTTGCAGAAGACAGCTTACCAGAGAAAAGAGCTTCAGTGGAAAATCCTTTAGAATTAGTTGAAGA
CTTCGAAAAAGGTTCTGTGGACATGGCAAAGAATAATTCTTTAGTCCCTGAGGCACATGCTCTTGCCCAAGGGTTGCAGACAATAAAAAATGACGACTTAGAAGAAATACGAGAGCTGGGTTCGGGTACATATGGAACTGTTTATTATGGAAAATGGAAAGGATCAGATGTTGCCATTAAGCGGATAAAAGCCAGTTGTT
TTACAGGAAGTCTGCCAGAGCAAGAACGAATGAGAGGAGACTTCTGGAGAGAGGCAAGTATTTTAGGTCAATTGCACCATCCCAATGTTGTGGCTTTCTATGGCATAGTTGTAGATGGTCCAGATGGGACTCTGGCAACTGTCACAGAGTATATGGTGAATGGATCTCTCAAGCAAGTTCTAAACAAGAAGGACAGAACA
ATTGATCGACGCAAAAGACTCTTTATAGCCCGTGATGCTGCATGTGGTATGCAATATTTGCATGAAAAGAACATTGTCCACTTTGATTTGAAGTGTGATAATCTTTTGGTTAATATGAGAGATCCTCATCGACCCATTTGCAAGATTGGTGATCTGGGCTTATCAAAGATAAAACAAAGAACATTGGTGTCTGCTGGTGT
TCGGGGAACTTTGCCATGGATGGCACCAGAGCTTCTAAGTGGAAAAAGTGGCATGGTGACTGATAAGGTTGATGTATATTCATTTGGAATAGTCATGTGGGAACTCCTCACAGGAGAAGAGCCTTATGCAAAAATGCACTGTGGTGAAATAATAGGAGGTATCATGAGTAATACATTGCGTCCCCCAATTCCAAGTTGGT
GCGAGCCTAGTTGGAGATCTTTGATGGAAAGGTGTTGGTCATCTGACCCAGGACAGAGACCTTCCTTTACAGAAATTGCTACAGAATTAAGGACAATGGGTGAAGCAATGAATCTAAAATAAAGGGGCCAGTCTGGTAAATAAGATTGCAAGCCAAGCCTCAAAATATTAGTTTCATTCCATAGACCTGTTCTAGTGCTT
GATAGCCCAGTCAATCCAGAAATGAGACGAGCTATCCTTGTTTCAGAAGCTACATAGTAAGTTGAAGGGTTGCGGGGAGCCCCTTTGGATGGCTTTGGTGAATGCAGAAAATGCCCCCTTTTTTGAGTTTGTTTTGCAAATATTGATAAAGAGTATCCTACACTACCAGTCTGAAGGTATACTGCATATAGACACCTAGT
TCATATCAGCATACAAAAACTGTTAAACATACATCTATTCAGTTGGCTTGTTGGGCAAGGAGTAGAGAAGGATTTTTCCATACTACTATACAAGATGATATCTTGTAGAGGTGTATTTTTTACGAGTGTATGTTCCTTGACACTAGACAGGGAAAGCATAATCTTAAGCCCATTGTATCATGTAAGAGATGGGTTATTGG
TATGGTTGGGAAATGAGGATTGATGTGGTGTAGATGTTTTGTCGGTGGTTGCAGATCGAGAGGAAACACGAAACTGTTCCTCCACAAATACCATCCAAACCATAAGTCCACAAATGAGATCTAATTCCTAGCTTAATAGTAGGTGTTGAAATATAGAAGGTTTGGCTCTTAATTTTTTAGGTCATAGTGGTAATGTGAAA
GGTGTGTCAACACGGCCATTTTACCGCTATTTTAACAGTTTTGAAGGCAACCAATATGCCTTGTTTATATCAAGTCAAGATATTAGTTAAATTGGTATAGAAGTCAACACCAAAAGTTCGGTCAATTATGTCTAGCAAGTTGCTAGTGTTCCCTCCTTCCAAAAACTGCTATGATTTATTGTAGAGGCAGAAGTATGTAT
ATTTCTTATTCTTTGAAATGCACGGGAGTTTTCTTTCTTCAATATAGTGTTG
>TRINITY_DN112509_c0_g1_i3 from sample A1 / Example unspliced isoform:CGGAACACCAAAAAACAATGGAAGGGAAAGAGGCTGCGTGCCCGCGGATGAGTTGGAGCTGAGATTCCAGCGGATATGCTGCGAATCAATTGAAATATTAGTGGCCAACGGGCTCGGACTGATCGAGCGATTGCCCGGGGGATTCGAACCCTGTATCTGCTGCTGCTGCTCTGGTTGAAGTGATATTGTGAAGCAAGAAG
CTTTGATTCAATAGCAGCAGCGCTTGGCGCCATGTGTCCTCCACAGTGCAGATTTTGCATATATATTTATATTTTTGTCTATATATGTCTCTGTTAATGGCCTTTAACAGCATGATTCAATGGGCTGCCCAGAGCAGGCCTCAGCACATTTAAGCCTCGGTTTTGTTTCTAGCTGCTGCTGGATCGTCCAGGGTTCGAAT
CTTGGGGACAGCGAGCTTGAATTGCTTGGCAAAGTTGGCGGTTTGTGCCGGAGGAATCATGTCCGAAGCCGAAGAGGAGAGTTCCAATTCGTTGCAGCAACGGGTGAAGTTCCTTTGCAGCTTCGGCGGCAGCATTCTGCCGCGGCCTTCTGATGGGAAGCTCCGGTATGTTGGGGGGGAAACCCGGATTGTGTGCGTGA
ACAGGGATATTAGCTTTTCGGAGTTCGTCTTGAAGATGGCGGAGTTTTGCGGCGAGGATTTTATAATTAAGTATCAGCTTCCCGAGGAGGAGGACCTGGATGCCCTGGTCTCTGTGCTCTGCGACGATGATCTCGCTAACATGATGGAGGAATACGATAGGCTTGAGGCGGCGGAGGGATTCACGCGGCTGCGGGTTTTC
CTGTTCTCGGCCGGGGAGGGTTACAATGTCTCCGCTGTCTGTATTGAAGGAGACGATGCTGATCAGAGGTATGTTGAAGCTTTAAATTCTTTGCCTGAGTCTGGTGACCCTAGAAAACAGGGTTTCGGTCAGTGGATCCATAGAGCCGAGTCCTTTAATTCCTTGAATTCTTTGAATTGTGTCTTGCCCCCTGATAATGG
AACTTGGAGCAGAGCTGAGTCCTTTAGTTCCTTGAGTTCCTTGAATTGTGTTGTACCGCCCGATAATGGATCCATACCCAGGAGGATTCGGATTCCTCATCAGGTCGGTGTTAATGTTAATTCTCCCAGGCAACAGCTCATGCATGGCCAGTCCCCACCGATGTCGCCTCTGGGCCATCCCCGCCAACCTTTGTCTCCCC
TGAGGCATGCTCCGCAGCCAGCAGCAGCTTCTTTTCAGTTAGAAGAGCCCGAGGTCTACCATCATGAGCAGCCCTGGACATTAGGGAGCCTTCTGCGTGCTCAGGATTTGATGTGTTCGGGTTCTACTGGTTCGCATGTTTCCTATTGGGATTCTATGAAGGGTCATTCTGAAGATATGCACCCTGCTGCTGAAGATAAT
TTCAGCAGGATGCAGATGAATCATGAGCACAGTATGAAAGTTTTCCCAGCGAACGAAAATTACGGAGGAAACTCAAACTCGCAAGACTTGAATAGCCCGAGAGGTAGGATTGAAGTTGGCAATCATTGGCCTGAAGATAAACCTGCCCCTCTTGATATCTTGTCTTGCCAACCTCTTGCCCACCATGGTCCTCCGAACAT
GCATCTCTTCCACCAGGCTGCTGCTGATTACCATCCAACCGATGTGCCTATAGTTCCTCCTGAATTCGCCTCCATGAAACCACCGCAGAGAAATCTTGCTAGTCCCCGAACCATGTCTAACAGCAGATTGTCTGAAAGTTTAGAATGGAATGAGAATAGCCCGAGAGGTAGGATTGAAGTTGGCAATCATTGGCCTGAAG
ATAAACCTGCCCCTGCTGATATCTTGTCTTGCCAGCCTCTTGCCCATCACGGTCCTCAGAACATGCATCTCCTGCACCATGCTGCTGCTGAGTACCATCCAACCGATGTGCCTATGGTTCCTTCTGAATTCGCCACCCCAAAACTACCACAGAGAAATCTTGCTATTCCCCGAACCATGTCTAACAGCAGATTGTCTGAA
AGTTTAGAATGGAATGAAGCGCAGCATCTGTCTCCTCGACACATGCCCTATCATGCAGCAAGCCTTCCAATGACTCGTGATGAAGTTGACCGTGAATTTGCCTGCTCAAGGCTGTCACAAGGAAAACCTGTGATGCGGAGCAGAATATATGACGGTCTAGGACGAAATGAAATACAGCGTCCCATGGATGATGACGAAAT
TGACTGGAATTTAGAAAGGCAGAAGTATATTCAAGCAGTTTGGAGTCACAATGGTGGTTTCCCCGAGGTTAAAGAAAGAAAACTTGATCACAGCAACATCCAACCAGCTGGACATTTTGAACCTCGAAATTCTCTTCCAAATCATTGCTGTCATTTACCCGATGACAGGCATGTTACATGGCATTGCAAGCCTTCAAATG
CCAATGAAGAGTTAGGGTTGACAGGTCAAAATATAAAGCATGCACAGGGAATGTTCGAGGGGAACTCTGTATTTGAAAGCCACTATGATAGGCAAGGTATATCTGAGGTAAGAAGTCCAGTTAAACACTGTGAACAGATGACATCGTATCAGGACAAACATGGATCAAGCCGGCTAGAAGCCCAGATTCATAATCCCCAC
TATATGGTCATGGAAGGCTTGCCAATGCAAAATGGAAGTGTTAAAGGGGATCAGCCAGTACCCTGTATGGATAATATTCGTACTCATATTGGCTATGAGGAGAGGTTAGACAGAGCAAGGACCTGGGTTCTGAATTCAAGAGATACAAAATATACAACTTTTGGAGGAACGCCACCTGAAGTTCTTACCAGAGAAGAAGT
TATATGCAGAGATGGGTGTCAAACCCATTGCTCTGGGCATGATTCTGGAGGTTGTTACGGGTTTAAGTCAGATGTATCCTACCATGAGCCATCTGGTGATTTGTACAAGCATGCTACTGCTAATCAAGTTGAGACTTCTACACGTGTACTGCCTAATCAACAACATAGGGTCAATGAAAATCATTTAGAGGGTGTCTCAG
TATTTCATTTGGGGTCCAGTTATGGGCAAAGCCATTGGGGTTATAGTTCGGCAGACGAAACGAGACAGGGGGTTGCTCCAGCTAAAAGCAATGTCGAGAACCCAGAAATGCCACGGCATTCTTACATATCTTATGAAATAAATGCAGCAGATACACGCAATGCTCCACTCTACATGCCAGATAACCTTTCACGAAAAGAG
ATTGAAAACACCTCGGGATATGATGGAGATCTGCACAAAGAATTTAATCAAGATTTGAGCTCAAAGATCACTGAGGAGATGAAATGTGTTGAGTCTGCCAATGTTCCATCTCATCGCCAGATGCCCAGGCAGCCTGGAATGCTTACTGAACAGGCTTCTGATGCATTTGTTAATTTGGAAAGCAATGACACTATATCTAA
CAGTGCCTGTTCTCATCCTCGGACCTCATCAAGGCTCTTCTTACCTGATAGCCTTACTCTTTCATCATCACCTGAAGTCTTATTATCTGCATTATCTTCTTCACATCCAAGAAGCAGTAACCTAAACTCCACTGGTCCTCCAGTGTATGACCAAAGTCCAGCAAGTAGCGTTAACATTACTGGGCCAGAGGAATTATTGA
TAGAAAATGAAAGAGGAAGGCAATGCAATGATCCAGAAAAGCCTGAGACAAAGGATTTCCAAATTGGACAGTCGACAGAGAAATTTGCTTCAGACATGGGTGTTAGAAATGATGAAAATTTGGGGAAGAGGATGCTTGACAATTGTTTGAAGGATAAGTCAGAGGTGGATCTTTCTGGAAAATCCACAAATAAAAAATCA
GCAGGGCAGAGTTCTAGTTTGTCATGTTCACCCATTACTTCAACAACTAAGTATGAAGAGAAACAGGTCTCTACTGCAAGTGCAAAAGGAGAAGATTGTAAGGAGTCAAAGCATAAATCTGTGACTCTGGGGTTGGTTGCAGAAGACAGCTTACCAGAGAAAAGAGCTTCAGTGGAAAATCCTTTAGAATTAGTTGAAGA
CTTCGAAAAAGGTTCTGTGGACATGGCAAAGAATAATTCTTTAGTCCCTGAGGCACATGCTCTTGCCCAAGGGTTGCAGACAATAAAAAATGACGACTTAGAAGAAATACGAGAGCTGGGTTCGGGTACATATGGAACTGTTTATTATGGAAAATGGAAAGGATCAGATGTTGCCATTAAGCGGATAAAAGCCAGTTGTT
TTACAGGAAGTCTGCCAGAGCAAGAACGAATGgtggatatctttccctctgaaaagttttgtatttttgttttaaagttcatgcacctcagcaagaatgaatttctggaagtggtgtagatctaagcttttatcacctgtgaagagtacaagcttctatgtttctattgtttttaaattttcaaaagcaccttcatttga
ttcgagtatcttgatatttaggttcaatgggctaacattctcttgtctcttacagAGAGGAGACTTCTGGAGAGAGGCAAGTATTTTAGGTCAATTGCACCATCCCAATGTTGTGGCTTTCTATGGCATAGTTGTAGATGGTCCAGATGGGACTCTGGCAACTGTCACAGAGTATATGGTGAATGGATCTCTCAAGCAAG
TTCTAAACAAGAAGGACAGAACAATTGATCGACGCAAAAGACTCTTTATAGCCCGTGATGCTGCATGTGGTATGCAATATTTGCATGAAAAGAACATTGTCCACTTTGATTTGAAGTGTGATAATCTTTTGGTTAATATGAGAGATCCTCATCGACCCATTTGCAAGGTATGCTGCATTATTAGGAATTTGGAAATGCTT
GTCACTATTGTTTATTTTTCAAAAAGCTTATGCATGTTTGTCACCATTATTTGTGTTGTTAAAAGCCTGTGAAATTATTTGAATTCTGATGATGCTTCATAAAGAATATCTACATCTCCTTTGTCAATATGGTAGTTGCTACTTAGGTAAAATGTAACCCTCGTTTTCCCCATGGGTTCTCCATGCTATATGCTTCCATG
GAAAATTTCAAATGTGTATATAGTATGTCTTGAAGATCCTAGTTTGCAATATCTATATGGCACAAGTGCCTG
Intron 3 GTAAATAAAT ... TTCACTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.38 | 194 | 18.8 | 38 |
| A2 | 18.9 | 133 | 13.4 | 31 |
| A3 | 19.19 | 139 | 15.2 | 33 |
| A4 | 15.29 | 144 | 11.8 | 26 |
| A5 | 6.98 | 80 | 11.6 | 6 |
| A6 | 20.41 | 78 | 8.4 | 20 |
| A7 | 19.01 | 196 | 20.4 | 46 |
| A8 | 17.77 | 162 | 18 | 35 |
| A9 | 15.27 | 172 | 18 | 31 |
| A10 | 17.77 | 162 | 17 | 35 |
>TRINITY_DN112509_c0_g1_i4 from sample A1 / Example spliced isoformCGGAACACCAAAAAACAATGGAAGGGAAAGAGGCTGCGTGCCCGCGGATGAGTTGGAGCTGAGATTCCAGCGGATATGCTGCGAATCAATTGAAATATTAGTGGCCAACGGGCTCGGACTGATCGAGCGATTGCCCGGGGGATTCGAACCCTGTATCTGCTGCTGCTGCTCTGGTTGAAGTGATATTGTGAAGCAAGAAG
CTTTGATTCAATAGCAGCAGCGCTTGGCGCCATGTGTCCTCCACAGTGCAGATTTTGCATATATATTTATATTTTTGTCTATATATGTCTCTGTTAATGGCCTTTAACAGCATGATTCAATGGGCTGCCCAGAGCAGGCCTCAGCACATTTAAGCCTCGGTTTTGTTTCTAGCTGCTGCTGGATCGTCCAGGGTTCGAAT
CTTGGGGACAGCGAGCTTGAATTGCTTGGCAAAGTTGGCGGTTTGTGCCGGAGGAATCATGTCCGAAGCCGAAGAGGAGAGTTCCAATTCGTTGCAGCAACGGGTGAAGTTCCTTTGCAGCTTCGGCGGCAGCATTCTGCCGCGGCCTTCTGATGGGAAGCTCCGGTATGTTGGGGGGGAAACCCGGATTGTGTGCGTGA
ACAGGGATATTAGCTTTTCGGAGTTCGTCTTGAAGATGGCGGAGTTTTGCGGCGAGGATTTTATAATTAAGTATCAGCTTCCCGAGGAGGAGGACCTGGATGCCCTGGTCTCTGTGCTCTGCGACGATGATCTCGCTAACATGATGGAGGAATACGATAGGCTTGAGGCGGCGGAGGGATTCACGCGGCTGCGGGTTTTC
CTGTTCTCGGCCGGGGAGGGTTACAATGTCTCCGCTGTCTGTATTGAAGGAGACGATGCTGATCAGAGGTATGTTGAAGCTTTAAATTCTTTGCCTGAGTCTGGTGACCCTAGAAAACAGGGTTTCGGTCAGTGGATCCATAGAGCCGAGTCCTTTAATTCCTTGAATTCTTTGAATTGTGTCTTGCCCCCTGATAATGG
AACTTGGAGCAGAGCTGAGTCCTTTAGTTCCTTGAGTTCCTTGAATTGTGTTGTACCGCCCGATAATGGATCCATACCCAGGAGGATTCGGATTCCTCATCAGGTCGGTGTTAATGTTAATTCTCCCAGGCAACAGCTCATGCATGGCCAGTCCCCACCGATGTCGCCTCTGGGCCATCCCCGCCAACCTTTGTCTCCCC
TGAGGCATGCTCCGCAGCCAGCAGCAGCTTCTTTTCAGTTAGAAGAGCCCGAGGTCTACCATCATGAGCAGCCCTGGACATTAGGGAGCCTTCTGCGTGCTCAGGATTTGATGTGTTCGGGTTCTACTGGTTCGCATGTTTCCTATTGGGATTCTATGAAGGGTCATTCTGAAGATATGCACCCTGCTGCTGAAGATAAT
TTCAGCAGGATGCAGATGAATCATGAGCACAGTATGAAAGTTTTCCCAGCGAACGAAAATTACGGAGGAAACTCAAACTCGCAAGACTTGAATAGCCCGAGAGGTAGGATTGAAGTTGGCAATCATTGGCCTGAAGATAAACCTGCCCCTCTTGATATCTTGTCTTGCCAACCTCTTGCCCACCATGGTCCTCCGAACAT
GCATCTCTTCCACCAGGCTGCTGCTGATTACCATCCAACCGATGTGCCTATAGTTCCTCCTGAATTCGCCTCCATGAAACCACCGCAGAGAAATCTTGCTAGTCCCCGAACCATGTCTAACAGCAGATTGTCTGAAAGTTTAGAATGGAATGAGAATAGCCCGAGAGGTAGGATTGAAGTTGGCAATCATTGGCCTGAAG
ATAAACCTGCCCCTGCTGATATCTTGTCTTGCCAGCCTCTTGCCCATCACGGTCCTCAGAACATGCATCTCCTGCACCATGCTGCTGCTGAGTACCATCCAACCGATGTGCCTATGGTTCCTTCTGAATTCGCCACCCCAAAACTACCACAGAGAAATCTTGCTATTCCCCGAACCATGTCTAACAGCAGATTGTCTGAA
AGTTTAGAATGGAATGAAGCGCAGCATCTGTCTCCTCGACACATGCCCTATCATGCAGCAAGCCTTCCAATGACTCGTGATGAAGTTGACCGTGAATTTGCCTGCTCAAGGCTGTCACAAGGAAAACCTGTGATGCGGAGCAGAATATATGACGGTCTAGGACGAAATGAAATACAGCGTCCCATGGATGATGACGAAAT
TGACTGGAATTTAGAAAGGCAGAAGTATATTCAAGCAGTTTGGAGTCACAATGGTGGTTTCCCCGAGGTTAAAGAAAGAAAACTTGATCACAGCAACATCCAACCAGCTGGACATTTTGAACCTCGAAATTCTCTTCCAAATCATTGCTGTCATTTACCCGATGACAGGCATGTTACATGGCATTGCAAGCCTTCAAATG
CCAATGAAGAGTTAGGGTTGACAGGTCAAAATATAAAGCATGCACAGGGAATGTTCGAGGGGAACTCTGTATTTGAAAGCCACTATGATAGGCAAGGTATATCTGAGGTAAGAAGTCCAGTTAAACACTGTGAACAGATGACATCGTATCAGGACAAACATGGATCAAGCCGGCTAGAAGCCCAGATTCATAATCCCCAC
TATATGGTCATGGAAGGCTTGCCAATGCAAAATGGAAGTGTTAAAGGGGATCAGCCAGTACCCTGTATGGATAATATTCGTACTCATATTGGCTATGAGGAGAGGTTAGACAGAGCAAGGACCTGGGTTCTGAATTCAAGAGATACAAAATATACAACTTTTGGAGGAACGCCACCTGAAGTTCTTACCAGAGAAGAAGT
TATATGCAGAGATGGGTGTCAAACCCATTGCTCTGGGCATGATTCTGGAGGTTGTTACGGGTTTAAGTCAGATGTATCCTACCATGAGCCATCTGGTGATTTGTACAAGCATGCTACTGCTAATCAAGTTGAGACTTCTACACGTGTACTGCCTAATCAACAACATAGGGTCAATGAAAATCATTTAGAGGGTGTCTCAG
TATTTCATTTGGGGTCCAGTTATGGGCAAAGCCATTGGGGTTATAGTTCGGCAGACGAAACGAGACAGGGGGTTGCTCCAGCTAAAAGCAATGTCGAGAACCCAGAAATGCCACGGCATTCTTACATATCTTATGAAATAAATGCAGCAGATACACGCAATGCTCCACTCTACATGCCAGATAACCTTTCACGAAAAGAG
ATTGAAAACACCTCGGGATATGATGGAGATCTGCACAAAGAATTTAATCAAGATTTGAGCTCAAAGATCACTGAGGAGATGAAATGTGTTGAGTCTGCCAATGTTCCATCTCATCGCCAGATGCCCAGGCAGCCTGGAATGCTTACTGAACAGGCTTCTGATGCATTTGTTAATTTGGAAAGCAATGACACTATATCTAA
CAGTGCCTGTTCTCATCCTCGGACCTCATCAAGGCTCTTCTTACCTGATAGCCTTACTCTTTCATCATCACCTGAAGTCTTATTATCTGCATTATCTTCTTCACATCCAAGAAGCAGTAACCTAAACTCCACTGGTCCTCCAGTGTATGACCAAAGTCCAGCAAGTAGCGTTAACATTACTGGGCCAGAGGAATTATTGA
TAGAAAATGAAAGAGGAAGGCAATGCAATGATCCAGAAAAGCCTGAGACAAAGGATTTCCAAATTGGACAGTCGACAGAGAAATTTGCTTCAGACATGGGTGTTAGAAATGATGAAAATTTGGGGAAGAGGATGCTTGACAATTGTTTGAAGGATAAGTCAGAGGTGGATCTTTCTGGAAAATCCACAAATAAAAAATCA
GCAGGGCAGAGTTCTAGTTTGTCATGTTCACCCATTACTTCAACAACTAAGTATGAAGAGAAACAGGTCTCTACTGCAAGTGCAAAAGGAGAAGATTGTAAGGAGTCAAAGCATAAATCTGTGACTCTGGGGTTGGTTGCAGAAGACAGCTTACCAGAGAAAAGAGCTTCAGTGGAAAATCCTTTAGAATTAGTTGAAGA
CTTCGAAAAAGGTTCTGTGGACATGGCAAAGAATAATTCTTTAGTCCCTGAGGCACATGCTCTTGCCCAAGGGTTGCAGACAATAAAAAATGACGACTTAGAAGAAATACGAGAGCTGGGTTCGGGTACATATGGAACTGTTTATTATGGAAAATGGAAAGGATCAGATGTTGCCATTAAGCGGATAAAAGCCAGTTGTT
TTACAGGAAGTCTGCCAGAGCAAGAACGAATGAGAGGAGACTTCTGGAGAGAGGCAAGTATTTTAGGTCAATTGCACCATCCCAATGTTGTGGCTTTCTATGGCATAGTTGTAGATGGTCCAGATGGGACTCTGGCAACTGTCACAGAGTATATGGTGAATGGATCTCTCAAGCAAGTTCTAAACAAGAAGGACAGAACA
ATTGATCGACGCAAAAGACTCTTTATAGCCCGTGATGCTGCATGTGGTATGCAATATTTGCATGAAAAGAACATTGTCCACTTTGATTTGAAGTGTGATAATCTTTTGGTTAATATGAGAGATCCTCATCGACCCATTTGCAAGATTGGTGATCTGGGCTTATCAAAGATAAAACAAAGAACATTGGTGTCTGCTGGTGT
TCGGGGAACTTTGCCATGGATGGCACCAGAGCTTCTAAGTGGAAAAAGTGGCATGGTGACTGATAAGGTTGATGTATATTCATTTGGAATAGTCATGTGGGAACTCCTCACAGGAGAAGAGCCTTATGCAAAAATGCACTGTGGTGAAATAATAGGAGGTATCATGAGTAATACATTGCGTCCCCCAATTCCAAGTTGGT
GCGAGCCTAGTTGGAGATCTTTGATGGAAAGGTGTTGGTCATCTGACCCAGGACAGAGACCTTCCTTTACAGAAATTGCTACAGAATTAAGGACAATGGGTGAAGCAATGAATCTAAAATAAAGGGGCCAGTCTGGTAAATAAGATTGCAAGCCAAGCCTCAAAATATTAGTTTCATTCCATAGACCTGTTCTAGTGCTT
GATAGCCCAGTCAATCCAGAAATGAGACGAGCTATCCTTGTTTCAGAAGCTACATAGTAAGTTGAAGGGTTGCGGGGAGCCCCTTTGGATGGCTTTGGTGAATGCAGAAAATGCCCCCTTTTTTGAGTTTGTTTTGCAAATATTGATAAAGAGTATCCTACACTACCAGTCTGAAGGTATACTGCATATAGACACCTAGT
TCATATCAGCATACAAAAACTGTTAAACATACATCTATTCAGTTGGCTTGTTGGGCAAGGAGTAGAGAAGGATTTTTCCATACTACTATACAAGATGATATCTTGTAGAGGTGTATTTTTTACGAGTGTATGTTCCTTGACACTAGACAGGGAAAGCATAATCTTAAGCCCATTGTATCATGTAAGAGATGGGTTATTGG
TATGGTTGGGAAATGAGGATTGATGTGGTGTAGATGTTTTGTCGGTGGTTGCAGATCGAGAGGAAACACGAAACTGTTCCTCCACAAATACCATCCAAACCATAAGTCCACAAATGAGATCTAATTCCTAGCTTAATAGTAGGTGTTGAAATATAGAAGGTTTGGCTCTTAATTTTTTAGGTCATAGTGGTAATGTGAAA
GGTGTGTCAACACGGCCATTTTACCGCTATTTTAACAGTTTTGAAGGCAACCAATATGCCTTGTTTATATCAAGTCAAGATATTAGTTAAATTGGTATAGAAGTCAACACCAAAAGTTCGGTCAATTATGTCTAGCAAGTTGCTAGTGTTCCCTCCTTCCAAAAACTGCTATGATTTATTGTAGAGGCAGAAGTATGTAT
ATTTCTTATTCTTTGAAATGCACGGGAGTTTTCTTTCTTCAATATAGTGTTG
>TRINITY_DN112509_c0_g1_i1 from sample A1 / Example unspliced isoform:ATGCTCTTGCCCAAGGGTTGCAGgtaaataaattgttttttcgtgagtagtggtctattgaaatttgaaacatatattgatctctgcttccatctcatgcgttttatgatctttcactctagACAATAAAAAATGACGACTTAGAAGAAATACGAGAGCTGGGTTCGGGTACATATGGAACTGTTTATTATGGAAAATGG
AAAGGATCAGATGTTGCCATTAAGCGGATAAAAGCCAGTTGTTTTACAGGAAGTCTGCCAGAGCAAGAACGAATG