NA ----> NA
Intron 1 GTATGAAACC ... ATACATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.14 | 9 | 11 | 14 |
| A2 | 64.1 | 7 | 13 | 12 |
| A3 | 67.44 | 7 | 16 | 13 |
| A4 | 62.26 | 10 | 15 | 18 |
| A5 | 77.78 | 3 | 10 | 11 |
| A6 | 57.89 | 12 | 11 | 22 |
| A7 | 65.71 | 18 | 23 | 46 |
| A8 | 61.9 | 8 | 5 | 21 |
| A9 | 64.1 | 14 | 23 | 27 |
| A10 | 58.06 | 13 | 14 | 22 |
>TRINITY_DN43789_c0_g1_i3 from sample A6 / Example spliced isoformTATCAATCCGTTCAGTGTCTTTTCAATATTTAATTGGATTGGTAAACAACTGCGCGTTAATCCCGTTTATCAACCCTTTCGGCGTTTTTCTTTTATGAGCAATTATGAATTTATGAGTCTTCATGGGCTGCTTCTGGTTGCTATCTGTAAAAGAATACATTTTGGCAAGTCTTAGAGCTACAAGGACATGTCCCTGACTC
CCTACACATTAACACTTTTCTAAACCTGCTTGCATGTCAGAGCTCCAGGAACACATTTCTTAGGCGAATTCCTTCCCAGAACTGACATGGGTTTCCACTTTTAACTGCCGACGTGGAAGGCACAGATCCAAATGTTCTGGCAGCACAGAAGTTCCGATAGAATTGCATTTTGCCAGCAAATAGAGAAGACACCCTGAAAA
AATCCTTTGGTAGAACAAATAAGTGCTCAATATCCAGAAAACCAAATGAAGTGGGTGCATCCATGGGATCCCCATCCTCCCAGTTCCAGCCGGCTTTTACCTGAATGCATTCGGCCATATCCCTCCTTTGAAGGATGGTTCTTCCGCATTGTGGACCCTGGCAAATGCGTGAGCTTAGCAGTGATCATTGCGACCAATTA
CGCCACCTGGGAGAGCCAATGTACTATTGTCTTCTGTATTGATGATGGAGAAATCCGAAACACTGATGGCAGCAAACATGGTGGGCGTACTCACAGAGTCCAGGCAATAGTAAAGGATGCAAGAATAACGAGTCTCTCTCATTTACAAGACAATAATACAAATTCATCAGAACCACTGGGATTCGAATGGGAGGCACCTG
AACTTGGAAAGGTTATTGTAAGGCCAAATGAAACCAAGATAGATATTTGTGTGATGGGATATCATTTGAAAGCCAGTTTGAAATCACAGATACATTGGAACCCATCTTCTTCTTATAAAGGTCCCGAGGGATGGGCAAGGATTCTTCCAATCATGCCTACACATTGGCATATTTATAGTATTGGCTCAGAAGCTTCTTAT
GAGTTTAGCAACAATAATGAGATATCTATTAATAGTCAAGGATGGGCTCACGAGGAAAAGAATTGGGGAGTGACATTTCCAGATGGCCACATATGGTTGCAAGCAATTTCAGATGACAATTCTGCACAGTTGGTTTTTGCAGGTGGTTACTACAAACTAGGAGGTGTCGTGAAGACACCATATATTGGTGCAATGGGCTT
TTGGTCACCAAGTCATCAAATTGAAATGAGAAATATTGATATAGGCACAATGTTCATGGATATATGTGCTATTCCTCGTGAAGGAAAATTTTCCATCAAAGCAATTAATCCATCGTATACTATCCTGATAACAAGTTTGGCAGACCCCGAAAGTTTTTGTGAGCCAATATTGGCACCAGTGGGGAAGTTAGAGTGGAAAC
CAGCTTGTCGAGAATCTTATCTTGCAAATGTAAAGGTGGAAGTCTACGCTCATAGGGTTTGGGGAATACCAATTAATAAAACACTGGTCTCAAGTCAAAGTTTTAATCGAGCTGCTCTGGAGTTCGGAGAAGATCTATGTCATGAGGACTGATATAATTGTATCTCTATTTTCAGTTGTATAACAGGAATATGAAACAAC
ATTCTCAAGCTATCCTCACGCAAAAGAGCTGAGAAAAACACGATTATTTCTGTATATCACAAAAATAAATTTGTTCTGCACATGCACTGGTTTGTATGTATTGTAGAAGAGTCTAATTGGGATAAATGCTTTTTATCTAATAAGAAAAAGCCCCATTTCTCGGTTCTGTCTTATCCTGCACTTGTAATAGTTTGCTTTTA
AACTGTAACTAGTGTTTACTAGTAGGATTAATGGATCATACCTCATTCAATATAACCTGAGCACATTTTGAAGACAGTTTAAATGAAAATCCAAGTGTACTGTCAAATCAGAGTGCACTGTCATTTGTACATGGTTGATTAAATGGAATGGCTACCTCAATCAGAATTTAG
>TRINITY_DN43789_c0_g1_i2 from sample A6 / Example unspliced isoform:TATCAATCCGTTCAGTGTCTTTTCAATATTTAATTGGATTGGTAAACAACTGCGCGTTAATCCCGTTTATCAACCCTTTCGGCGTTTTTCTTTTATGAGCAATTATGAATTTATGAGTCTTCATGGGCTGCTTCTGGTTGCTATCTGTAAAAGAATACATTTTGGCAAGTCTTAGAGCTACAAGGACATGTCCCTGACTC
CCTACACATTAACACTTTTCTAAACCTGCTTGCATGTCAGAGCTCCAGGAACACATTTCTTAGGCGAATTCCTTCCCAGAACTGACATGGGTTTCCACTTTTAACTGCCGACGTGGAAGGCACAGATCCAAATGTTCTGGCAGCgtatgaaacctctttcccatgcaccaagcaaacttacaggggtatttgggctgtgt
gtatttttaattggcatggcagaatgaaacttacaggtgtatttgagctgtgtgtgtttttaatcggcatgacagatttttcaatctgctggaaccgaaaaaactgataacttcaatacatgcagACAGAAGTTCCGATAGAATTGCATTTTGCCAGCAAATAGAGAAGACACCCTGAAAAAATCCTTTGGTAGAACAAA
TAAGTGCTCAATATCCAGAAAACCAAATGAAGTGGGTGCATCCATGGGATCCCCATCCTCCCAGTTCCAGCCGGCTTTTACCTGAATGCATTCGGCCATATCCCTCCTTTGAAGGATGGTTCTTCCGCATTGTGGACCCTGGCAAATGCGTGAGCTTAGCAGTGATCATTGCGACCAATTACGCCACCTGGGAGAGCCAA
TGTACTATTGTCTTCTGTATTGATGATGGAGAAATCCGAAACACTGATGGCAGCAAACATGGTGGGCGTACTCACAGAGTCCAGGCAATAGTAAAGGATGCAAGAATAACGAGTCTCTCTCATTTACAAGACAATAATACAAATTCATCAGAACCACTGGGATTCGAATGGGAGGCACCTGAACTTGGAAAGGTTATTGT
AAGGCCAAATGAAACCAAGATAGATATTTGTGTGATGGGATATCATTTGAAAGCCAGTTTGAAATCACAGATACATTGGAACCCATCTTCTTCTTATAAAGGTCCCGAGGGATGGGCAAGGATTCTTCCAATCATGCCTACACATTGGCATATTTATAGTATTGGCTCAGAAGCTTCTTATGAGTTTAGCAACAATAATG
AGATATCTATTAATAGTCAAGGATGGGCTCACGAGGAAAAGAATTGGGGAGTGACATTTCCAGATGGCCACATATGGTTGCAAGCAATTTCAGATGACAATTCTGCACAGTTGGTTTTTGCAGGTGGTTACTACAAACTAGGAGGTGTCGTGAAGACACCATATATTGGTGCAATGGGCTTTTGGTCACCAAGTCATCAA
ATTGAAATGAGAAATATTGATATAGGCACAATGTTCATGGATATATGTGCTATTCCTCGTGAAGGAAAATTTTCCATCAAAGCAATTAATCCATCGTATACTATCCTGATAACAAGTTTGGCAGACCCCGAAAGTTTTTGTGAGCCAATATTGGCACCAGTGGGGAAGTTAGAGTGGAAACCAGCTTGTCGAGAATCTTA
TCTTGCAAATGTAAAGGTGGAAGTCTACGCTCATAGGGTTTGGGGAATACCAATTAATAAAACACTGGTCTCAAGTCAAAGTTTTAATCGAGCTGCTCTGGAGTTCGGAGAAGATCTATGTCATGAGGACTGATATAATTGTATCTCTATTTTCAGTTGTATAACAGGAATATGAAACAACATTCTCAAGCTATCCTCAC
GCAAAAGAGCTGAGAAAAACACGATTATTTCTGTATATCACAAAAATAAATTTGTTCTGCACATGCACTGGTTTGTATGTATTGTAGAAGAGTCTAATTGGGATAAATGCTTTTTATCTAATAAGAAAAAGCCCCATTTCTCGGTTCTGTCTTATCCTGCACTTGTAATAGTTTGCTTTTAAACTGTAACTAGTGTTTAC
TAGTAGGATTAATGGATCATACCTCATTCAATATAACCTGAGCACATTTTGAAGACAGTTTAAATGAAAATCCAAGTGTACTGTCAAATCAGAGTGCACTGTCATTTGTACATGGTTGATTAAATGGAATGGCTACCTCAATCAGAATTTAG