sp|Q9SX77|SDH5_ARATH ----> Succinate dehydrogenase subunit 5, mitochondrial

Intron 1 GTAAGAGAAT ... TGCTTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	29.95	101	38	17
A2	34.45	160.5	80	9
A3	35.45	178.5	92	4
A4	31.27	109	46	1
A5	31.58	67	29	2
A6	33.37	687	323	10
A7	32.59	567	253	4
A8	34.83	331	165	5
A9	31.11	523.5	213	9
A10	32.85	509	233	0

>TRINITY_DN107024_c0_g1_i3 from sample A2 / Example spliced isoform

GCGAGTCGCGACTAATAAATCAGTGATTCGTGTGATTGTTCTGTTATTTTACTGCGTATCTGATTGTTGGAAGGAAGGCAGCTATGGCGAGTCTAATAGCAGCCAGGCTTGGCACGTCCTCGAGGTTGAAGCCTGCGTTTGCCCATCTTTTGCGAGCAAATATATTGTCAAAACTTCTAGTTGGAGGGCATGAGCATGTT
CGGAATATAACTTCTCATGTAGCACTGGACTCTCAGGCTGGTAGAAAGGATCTCAGGCTTCCATTTGCAGTCAAAACTTCTATACGATCATTTTGTTCAGACATCAGTGCATTACCCCAAGTAACAGACCTCGATGTTAAGAATGCACTGAAGGACGTATTGGCTGCAGATTGGGAGGAGCTTCCTGAACCTTTACAGGC
TGATGTTATGAATGCATTGTCAAAGGAAACAGATGATAAGGCTGGACAGGAAGCTCTAACAAATGCATGGCGTGCAGCTGAGGCAGTGGAGCAGTTCTCTGGAGTTTTGGAATCCTTGAAAATGGAGCTAGATGAAATAAGTGGGCATACAGGCGAGAATGTGAGACCCTTGCCAGTGGAAATTCAAGATGCTTTACAGG
CTGCATATAAACGTTACAGCAATTACTTGGAGGCATTTGGCCCAGATGAAACTTACTTGAGAAAGAAAGTTGAAACAGAGCTAGGCCGTCAAATGATTTATATAAAGATGCGATGTAGTGGGCTTGGCGCAGAATGGGGAAAGGTTACACTTATTGGCACCTCTGGACTTTCTGGCTCATACATTGAGCAGCGTAGTTAA
CCTTGTTAAAGCTATCCCTGAGAGGCCGGGGATACAGTTTGAGCATAAAGCTCGTGGAACCTTGTCAAATTTTCAATTTATGTTATGCATACTGCATAGCATGATTTAGATGGAAGATGGGTGCAGCATTTGTGCACTTGCTGTTTTTCACCAGGAATTGGGTTAGTGACGCTGTTGGTTGTTGTGAAGACTATTGATAT
AGATTCTGGGATTGTGGAACAAACTTGTATTTGAAGAGAATAAAAGAATGGCCTTGTACATCATACATTTCTCATAGAAGAATCTGGTTAATGCTAGAGCTTGTATGGCTGTTTTGGCATATAAACTAAAAATACATGTAATCACTATTATGAGATCCGTTTTTTTACTGAAGTGGGCATTCAGATGTGCTTCAGCCTTC
CTTACACCATCTGGTTGATTGTCATACTCTGGTATGTCTTATTGGATTATGGCTTCTTAACCTACATCTTACCCTAAC

>TRINITY_DN107024_c0_g1_i4 from sample A2 / Example unspliced isoform:

GCGAGTCGCGACTAATAAATCAGTGATTCGTGTGATTGTTCTGTTATTTTACTGCGTATCTGATTGTTGGAAGGAAGGCAGCTATGGCGAGTCTAATAGCAGCCAGGCTTGGCACGTCCTCGAGGTTGAAGCCTGCGTTTGCCCATCTTTTGCGAGCAAATATATTGTCAAAACTTCTAGTTGGAGGGCATGAGCATGTT
CGGAATATAACTTCTCATGTAGCACTGGgtaagagaatgcaaattctcatttccatgtcactatgtttcttagtttgattcgtaatttttatcttatgtgctaagtttatgttgttgcttttcagACTCTCAGGCTGGTAGAAAGGATCTCAGGTAGGCATTGAGAGATTTATTAGGACTATCATACATATGTGCTATCT
GGAAAATAGCATTTGCATGTTCGACAAATATGGTCATGACTATTGAATGCTTTCCATGCTTCCATTTGCAG

Intron 2 GTTCGTTTTT ... TCTTGTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	20.94	168	34	55
A2	20	162	26	55
A3	20.78	143	31	44
A4	21.48	117	12	52
A5	17.71	72	10	21
A6	22.84	951	192	371
A7	21.72	872	159	325
A8	22.68	670	139	254
A9	19.84	717	138	217
A10	20.83	625.3	95	234

>TRINITY_DN37875_c0_g1_i3 from sample A7 / Example spliced isoform

TTTCAAATGGAGGATCCTTTTTGTATTTTTATTAAGAGATCGCCTCCACACACACAACCCCTTGAGATCCATGTGTATTGTGCATATTCTGTCTGTGACCTTTTCACATTTGGCCTCCATTTATAACAGGGGCAGTATGCACAGATCGTCAAAACTTCTAGTTGGAGGGCATGAGCATGTTCGGAATATAACTTCTCATG
TAGCACTGGACTCTCAGGCTGGTAGAAAGGATCTCAGGCTTCCATTTGCAGTCAAAACTTCTATACGATCATTTTGTTCAGACATCAGTGCATTACCCCAAGTAACAGACCTCGATGTTAAGAATGCACTGAAGGACGTATTGGCTGCAGATTGGGAGGAGCTTCCTGAACCTTTACAGGCTGATGTTATGAATGCATTG
TCAAAGGAAACAGATGATAAGGCTGGACAGGAAGCTCTAACAAATGCATGGCGTGCAGCTGAGGCAGTGGAGCAGTTCTCTGGAGTTTTGGAATCCTTGAAAATGGAGCTAGATGAAATAAGTGGGCATACAGGCGAGAATGTGAGACCCTTGCCAGTGGAAATTCAAGATGCTTTACGGGCTGCATATAAACGTTACAG
CAATTACTTGGAGGCATTTGGCCCAGATGAAACTTACTTGAGAAAGAAAGTTGAAACAGAGCTAGGCCGTCAAATGATTTATATAAAGATGCGATGTAGTGGGCTTGGCGCAGAATGGGGAAAGGTTACACTTATTGGCACCTCTGGACTTTCTGGCTCATACATTGAGCAGCGTAGTTAACCTTGTTAAAGCTATCCCT
GAGAGGCCGGGGATACAGTTTGAGCATAAAGCTCGTGGAACCTTGTCAAATTTTCAATTTATGTTATGCATACTGCATAGCATGATTTAGATGGAAGATGGGTGCAGCATTTGTGCACTTGCTGTTTTTCACCAGGAATTGGGTTAGTGACGCTGTTGGTTGTTGTGAAGACTATTGATATAGATTCTGGGATTGTGGAA
CAAACTTGTATTTGAAGAGAATAAAAGAATGGCCTTGTACATCATACATTTCTCATAGAAGAATCTGGTTAATGCTAGAGCTTGTATGGCTGTTTTGGCATATAAACTAAAAATACATGTAATCACTATTATGAGATCCGTTTTTTTACTGAAGTGGGCATTCAGATGTGCTTCAGCCTTCCTTACACCATCTGGTTGAT
TGTCATACTCTGGTATGTCTTATTGGATTATGGCTTCTTAACCTACATCTTACCCTAACAACTAGTTTTTTC

>TRINITY_DN37875_c0_g1_i2 from sample A7 / Example unspliced isoform:

GTCGCGACTAATAAATCAGTGATTCGTGTGATTGTTCTGTTATTTTACTGCGTATCTGATTGTTGGAAGGAAGGCAGCTATGGCGAGTCTAATAGCAGCCAGGCTTGGCACGTCCTCGAGGTTGAAGCCTGCGTTTGCCCATCTTTTGCGAGCAAATATATTGTCAAAACTTCTAGTTGGAGGGCATGAGCATGTTCGGA
ATATAACTTCTCATGTAGCACTGGACTCTCAGGCTGGTAGAAAGGATCTCAGGCTTCCATTTGCAGTCAAAACTTCTATACGATCATTTTGTTCAGACATCAGTGCATTACCCCAAGTAACAGACCTCGATGTTAAGAATGCACTGAAGGACGTATTGGCTGCAGATTGGGAGGAGCTTCCTGAACCTTTACAGGCTGAT
GTTATGAATGCATTGTCAAAGGAAACAGATGATAAGGCTGGACAGGAAGCTCTAACAAATGCATGGCGTGCAGCTGAGGCAGTGGAGCAGTTCTCTGGAGTTTTGGAATCCTTGAAAATGGAGCTAGATGAAATAAGTGGGCATACAGGCGAGgttcgtttttgttttttcaagatactgagatactcattaagtatatc
tcgtgtttatgaacattcattttatttccttagctgaatatcaaggctttaatgctcaaatctaaaccaagcaaatggggtaaaacaaaattatattagaatatatacaggcgttaacaaaatacatggacgatttttaagttagacataataaattgatggttctgtacatggaattggcttgagggaatgtcagtttt
aatttaactttcatgctaaataagtttcaaaggttgtaatggctgtaatcctgacagggatacagcctcaacaggagtgagttcctctcttttgatattatgtatttgtatggtctcattgtagatggaattcttgtgcagAATGTGAGACCCTTGCCAGTGGAAATTCAAGATGCTTTACGGGCTGCATATAAACGTTA
CAGCAATTACTTGGAGGCATTTGGCCCAGATGAAACTTACTTGAGAAAGAAAGTTGAAACAGAGCTAGGCCGTCAAATGATTTATATAAAGATGCGATGTAGTGGGCTTGGCGCAGAATGGGGAAAGGTTACACTTATTGGCACCTCTGGACTTTCTGGCTCATACATTGAGCAGCGTAGTTAACCTTGTTAAAGCTATC
CCTGAGAGGCCGGGGATACAGTTTGAGCATAAAGCTCGTGGAACCTTGTCAAATTTTCAATTTATGTTATGCATACTGCATAGCATGATTTAGATGGAAGATGGGTGCAGCATTTGTGCACTTGCTGTTTTTCACCAGGAATTGGGTTAGTGACGCTGTTGGTTGTTGTGAAGACTATTGATATAGATTCTGGGATTGTG
GAACAAACTTGTATTTGAAGAGAATAAAAGAATGGCCTTGTACATCATACATTTCTCATAGAAGAATCTGGTTAATGCTAGAGCTTGTATGGCTGTTTTGGCATATAAACTAAAAATACATGTAATCACTATTATGAGATCCGTTTTTTTACTGAAGTGGGCATTCAGATGTGCTTCAGCCTTCCTTACACCATCTGGTT
GATTGTCATACTCTGGTATGTCTTATTGGATTATGGCTTCTTAACCTACATCTTACCCTAACAACTAGTTTTTTC