sp|Q9FIJ2|NDUA2_ARATH ----> NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2

Intron 1 GTTTGTACTA ... AACACTCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	18.27	378	97	72
A2	19.18	316	78	72
A3	18.93	439	95	110
A4	14.8	239	49	34
A5	17.47	189	37	43
A6	19.79	3243	686	914
A7	18.64	3341	699	832
A8	19.66	3586	727	1028
A9	18.3	3670	740	904
A10	17.71	2874	594	643

>TRINITY_DN39631_c4_g1_i5 from sample A9 / Example spliced isoform

AACAAAACAGAAAAGTCATAGATGCAAACGACTGCCTAGGTCGTTCAGCGAGCAAGGGAAGGCAGAGGCGATAACGGTAATAACATTGGGGGAGGAAAATGGCGTGGAGAGCGCAGTTGTCTCGAAATCTCAAGGAGCTCCGCATTCATCTCTGCCAAACCTCGCCATCCAGTGCTTCTACCAGAGACTTCATTCTCTCT
AATTATATGGACTTGAAGACCCTAAATCCAAGCTTTCCAATTTTGATTCGAGAGTGCAGTGGAATTGAGCCAAGAATATGGGCCAGATATCAGTATGGAGTAGAAAAGAGTGTGGCATTGGATGGATTGACAGCAGGCCAAATCACTGAAAAAGTCAAGGAACTAGTAAGAGCTGGTGCTGAGATTTCTGCTAAAACAGG
ATCTTGAAGTTATTTTTTTTCATGCTCACTGCCACTCTTGATGTAGTGTTGGCTGATCCAGATATGTTTGGTTTCATACTTTATGAAATAAGTGCATCTAAGCAGGCACCACATCCACCAGTTTCAAACCTGATTTTTTAATCACATACAATTACATCAGGAGCTTGAGTGGGCTTCATTGCTTGAATTGGTTCTGTTGT
GTTTTATTAAACTAATGCTTATATTTCTGTTGTGTTTTATTAAACTAATACTTACATTTTCAAACAAGTCTCTAATTTTTTAAAGAATCGTCAAACTATAAAGGTTTGTTGTGTACATGATAGTATGATACTATGCTGTGAAATATACACAGCTTTTGATTATCATTTAACCTCAATTTTTTTCCGAAGCAGGAGGATGT
TACAATGAGATTTTAAGGCTGTGAAGAGAAACAGCACAACTGATTCTGCTGCTTTCCCACC

>TRINITY_DN39631_c4_g1_i4 from sample A9 / Example unspliced isoform:

AACAAAACAGAAAAGTCATAGATGCAAACGACTGCCTAGGTCGTTCAGCGAGCAAGGGAAGGCAGAGGCGATAACGGTAATAACATTGGGGGAGGAAAATGGCGTGGAGAGCGCAGTTGTCTCGAAATCTCAAGGAGCTCCGCATTCATCTCTGCCAAACCTCGCCATCCAGTGCTTCTACCAGAGACTTCATTCTCTCT
AATTATATGGACTTGAAGACCCTAAATCCAAGCTTTCCAATTTTGATTCGAGAGTGCAGTGGAATTGAGCCAAGAATATGGGCCAGATATCgtttgtactaaccctcaggcaagggccagattgttctattgattgaattgcctctgagaggcacagtctattatgaaagttagtttttctgagtacaaaggaagggttc
aacactccagAGTATGGAGTAGAAAAGAGTGTGGCATTGGATGGATTGACAGCAGGCCAAATCACTGAAAAAGTCAAGGAACTAGTAAGAGCTGGTGCTGAGATTTCTGCTAAAACAGGATCTTGAAGTTATTTTTTTTCATGCTCACTGCCACTCTTGATGTAGTGTTGGCTGATCCAGATATGTTTGGTTTCATACTT
TATGAAATAAGTGCATCTAAGCAGGCACCACATCCACCAGTTTCAAACCTGATTTTTTAATCACATACAATTACATCAGGAGCTTGAGTGGGCTTCATTGCTTGAATTGGTTCTGTTGTGTTTTATTAAACTAATGCTTATATTTCTGTTGTGTTTTATTAAACTAATACTTACATTTTCAAACAAGTCTCTAATTTTTT
AAAGAATCGTCAAACTATAAAGGTTTGTTGTGTACATGATAGTATGATACTATGCTGTGAAATATACACAGCTTTTGATTATCATTTAACCTCAATTTTTTTCCGAAGCAGGAGGATGTTACAATGAGATTTTAAGGCTGTGAAGAGAAACAGCACAACTGATTCTGCTGCTTTCCCACC