NA ----> NA
Intron 1 GTTTTTTCCT ... TATTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.1 | 13 | 8 | 6 |
| A2 | 40.91 | 26 | 18 | 8 |
| A3 | 44.44 | 15 | 12 | 5 |
| A4 | 42.86 | 4 | 3 | 0 |
| A5 | 50 | 1 | 1 | 0 |
| A6 | 70.83 | 28 | 68 | 7 |
| A7 | 70.64 | 32 | 77 | 4 |
| A8 | 67.93 | 49.2 | 104.2 | 15 |
| A9 | 65.03 | 50 | 93 | 5 |
| A10 | 67.06 | 28 | 57 | 3 |
>TRINITY_DN43058_c0_g2_i4 from sample A6 / Example spliced isoformCATGAAGGGAAGTCATCTTCTAAGGTTCTTTCAGATATGCGACTGAAGGAAGACTGGGAGCAGCGTATTATTGGACCAAGTATGCCACCTTTCACAAAGGGCCATGGATGTGTTGCAGGCCTGGAGAAATTGAAAGGAGATAAATATAAAGATGAAGAGAGAAGGGATCGAGCTAAACATGATTCAAAAATGCACAAGAA
CACAGAACGAGAGATCAGAGTAACAAAATCAAAGAAAAAACATGAAAAAAGAAACAAGTCGGAAAAGAGAAAGGGGAAAAAAGAGAAAAGGAAAAAGAGGAGAGATGGATGAGTTAGTTTTTATAAGTAGCCCATGACTATTCAGGCTTTCAAATTCCATGCATTTGATCTGTTCTTGCCCAGGAAGGCATGCACTAGTA
GAAATAATTTTGGGTTGCACTTTATGTATGCACCAGCGTGCACCACTAGAAATCATTTTGGGTTGCACTTAATGTATGCACCAGCTGGCAGTCAGTGGCACAGGGTCAGTAAAGCTTTGTCGACCTGGGGAATATATAAATTTTAACATGCATGCCATTTCGACCTGATAACCCGTGTTTGCTGGAGTGCAGTGTGAATT
TGTTTGCAAGCCCATTCAAAGGTGTCCTGTTATCTTGGATTAAGCCAGAGTGAAACAGATGTCTCCAAAGTGCTTAGCCAAGCAACAAGACAGAAGTCTTTTACCGTGACTCATCCAAGCTTCAAGCCTTATGTGGGAAACTGTTTTAAGACGAGAATGATTGTAGGAAGTCTTGTAATGCAGCTCTCAAGAATTTCTTA
AGAATACAAGAACATTTGTAGGGAGGTCTTGTGATACATCATTCAAGAACTTCTTGGGAAGATATGAACGCTTGTGAGCAAGTCTTACGATGCATCATTCAAGAACTTCTTGAGAAGATAAGATTGCTTGTAGGCAAGTCTTGTGATGCGTCTTTCGATAACTTCCTATCAAGCCATATGTGGGAGACTGTTCTAGAAGA
TAATAATGCTTGTAGGCAAGTCTGGTGGTGCATCCATCAAGAACTTCGTTAGAAGATAAGAATGCTTGTAGGAAATTCTTGTGATACATCTTGCAAGAGCTTTTCCACATGCAACAATACTTTAGGTTTTGCATTCATGATATTCTCTCTGAACTACAAAAGGTTTGGTACAGTTGTAATGAAGAAAAATGGCTAAATAG
ATTTTTTCCACTGAGCTGGGTCTCCTATGTATCTTGACAAAAATGTAGAGCAGAATTAAAGAATCTTCTGTAGGGACT
>TRINITY_DN43058_c0_g2_i2 from sample A6 / Example unspliced isoform:CATGAAGGGAAGTCATCTTCTAAGGTTCTTTCAGATATGCGACTGAAGGAAGACTGGGAGCAGCGTATTATTGGACCAAGTATGCCACCTTTCACAAAGGGCCATGGATGTGTTGCAGGCCTGGAGAAATTGAAAGGAGATAAATATAAAGATGAAGAGAGAAGGGATCGAGCTAAACATGATTCAAAAATGCACAAGAA
CACAGAACGAGAGATCAGAGTAACAAAATCAAAGAAAAAACATGAAAAAAGAAACAAGTCGGAAAAGAGAAAGGGGAAAAAAGAGAAAAGGAAAAAGAGGAGAGATGGATGAGTTAGTTTTTATAAGTAGCCCATGACTATTCAGGCTTTCAAATTCCATGCATTTGATCTGTTCTTGCCCAGGAAGGCATGCACTAGTA
GAAATAATTTTGGGTTGCACTTTATGTATGCACCAGCGTGCACCACTAGAAATCATTTTGGGTTGCACTTAATGTATGCACCAGCTGGCAGTCAGTGGCACAGgttttttcctgccggatttgagttgctatgtactagttttaaattaacttttaataggatcttgcagtctttggtaaacaatgacgcagtttatatc
cctacgaaatataggagaggaattgattgattctgtatatttattattaacacacttgaaattctgtaattgttggtgttaagtctcaaaatgctattaactgttctttctccctttccactgaaaatcctacaaagagccgtgtgttaggattagggaattttcaattttgttattgcttttaaaagtttctctccatt
tatatcgtttgcttgtttgtatttttcagGGTCAGTAAAGCTTTGTCGACCTGGGGAATATATAAATTTTAACATGCATTCCATTTTGACCTGACAACCCGTGTTTGCTGGAGTGCAGTGTGAATTTGTTTGCAAGCCCATTCAAAGGTGTCCTGTTATCTTGGATTAAGCCAGAGTGAAACAGATGTCTCCAAAGTGCT
TAGCCAAGCAACAAGACAGAAGTCTTTTACCGTGACTCATCCAAGCTTCAAGCCTTATGTGGGAAACTGTTTTAAGACGAGAATGATTGTAGGAAGTCTTGTAATGCAGCTCTCAAGAATTTCTTAAGAATACAAGAACATTTGTAGGGAGGTCTTGTGATACATCATTCAAGAACTTCTTGGGAAGATATGAACGCTTG
TGAGCAAGTCTTACGATGCATCATTCAAGAACTTCTTGAGAAGATAAGATTGCTTGTAGGCAAGTCTTGTGATGCGTCTTTCGATAACTTCCTATCAAGCCATATGTGGGAGACTGTTCTAGAAGATAATAATGCTTGTAGGCAAGTCTGGTGGTGCATCCATCAAGAACTTCGTTAGAAGATAAGAATGCTTGTAGGAA
ATTCTTGTGATACATCTTGCAAGAGCTTTTCCACATGCAACAATACTTTAGGTTTTGCATTCATGATATTCTCTCTGAACTACAAAAGGTTTGGTACAGTTGTAATGAAGAAAAATGGCTAAATAGATTTTTTCCACTGAGCTGGGTCTCCTATGTATCTTGACAAAAATGTAGAGCAGAATTAAAGAATCTTCTGTAGG
GACT
Intron 2 GTTTTTTCCT ... TGGAGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.84 | 11 | 8 | 13 |
| A2 | 54.1 | 14 | 18 | 15 |
| A3 | 60 | 11 | 12 | 21 |
| A4 | 47.83 | 6 | 3 | 8 |
| A5 | 62.5 | 3 | 1 | 9 |
| A6 | 66.86 | 28 | 68 | 45 |
| A7 | 65.48 | 29 | 77 | 33 |
| A8 | 64.43 | 43.3 | 104 | 53 |
| A9 | 56.64 | 49 | 93 | 35 |
| A10 | 55.26 | 34 | 57 | 27 |
>TRINITY_DN43058_c0_g2_i3 from sample A6 / Example spliced isoformCATGAAGGGAAGTCATCTTCTAAGGTTCTTTCAGATATGCGACTGAAGGAAGACTGGGAGCAGCGTATTATTGGACCAAGTATGCCACCTTTCACAAAGGGCCATGGATGTGTTGCAGGCCTGGAGAAATTGAAAGGAGATAAATATAAAGATGAAGAGAGAAGGGATCGAGCTAAACATGATTCAAAAATGCACAAGAA
CACAGAACGAGAGATCAGAGTAACAAAATTAAAGAAAAAACGTGAAAAAAGAGACAAGTCGGAAAAGAGAAAGGGGAAAAAAGAGAAAAGGAAAAAGAGGAGAGATGGATGAGTTAGTTTTTATCTAAGTAGCCCATGACTATTCAGGCTTTCAAATTCCATGCATTTGATCTGTTCTTGCCCAGGAAGGCATGCACTAG
TAGAAATAATTTTGGGTTGCACTTTATGTATGCACCAGCGTGCACCACTAGAAATCATTTTGGGTTGCACTTAATGTATGCACCAGCTGGCAGTCAGTGGCACAGTGTGAATTTGTTTGCAAGCCCATTCAAAGGTGTCCTGTTATCTTGGATTAAGCCAGAGTGAAACAGATGTCTCCAAAGTGCTTAGCCAAGCAACA
AGACAGAAGTCTTTTACCGTGACTCATCCAAGCTTCAAGCCTTATGTGGGAAACTGTTTTAAGACGAGAATGATTGTAGGAAGTCTTGTAATGCAGCTCTCAAGAATTTCTTAAGAATACAAGAACATTTGTAGGGAGGTCTTGTGATACATCATTCAAGAACTTCTTGGGAAGATATGAACGCTTGTGAGCAAGTCTTA
CGATGCATCATTCAAGAACTTCTTGAGAAGATAAGATTGCTTGTAGGCAAGTCTTGTGATGCGTCTTTCGATAACTTCCTATCAAGCCATATGTGGGAGACTGTTCTAGAAGATAATAATGCTTGTAGGCAAGTCTGGTGGTGCATCCATCAAGAACTTCGTTAGAAGATAAGAATGCTTGTAGGAAATTCTTGTGATAC
ATCTTGCAAGAGCTTTTCCACATGCAACAATACTTTAGGTTTTGCATTCATGATATTCTCTCTGAACTACAAAAGGTTTGGTACAGTTGTAATGAAGAAAAATGGCTAAATAGATTTTTTCCACTGAGCTGGGTCTCCTATGTATCTTGACAAAAATGTAGAGCAGAATTAAAGAATCTTCTGTAGGGACT
>TRINITY_DN43058_c0_g2_i2 from sample A6 / Example unspliced isoform:CATGAAGGGAAGTCATCTTCTAAGGTTCTTTCAGATATGCGACTGAAGGAAGACTGGGAGCAGCGTATTATTGGACCAAGTATGCCACCTTTCACAAAGGGCCATGGATGTGTTGCAGGCCTGGAGAAATTGAAAGGAGATAAATATAAAGATGAAGAGAGAAGGGATCGAGCTAAACATGATTCAAAAATGCACAAGAA
CACAGAACGAGAGATCAGAGTAACAAAATCAAAGAAAAAACATGAAAAAAGAAACAAGTCGGAAAAGAGAAAGGGGAAAAAAGAGAAAAGGAAAAAGAGGAGAGATGGATGAGTTAGTTTTTATAAGTAGCCCATGACTATTCAGGCTTTCAAATTCCATGCATTTGATCTGTTCTTGCCCAGGAAGGCATGCACTAGTA
GAAATAATTTTGGGTTGCACTTTATGTATGCACCAGCGTGCACCACTAGAAATCATTTTGGGTTGCACTTAATGTATGCACCAGCTGGCAGTCAGTGGCACAGgttttttcctgccggatttgagttgctatgtactagttttaaattaacttttaataggatcttgcagtctttggtaaacaatgacgcagtttatatc
cctacgaaatataggagaggaattgattgattctgtatatttattattaacacacttgaaattctgtaattgttggtgttaagtctcaaaatgctattaactgttctttctccctttccactgaaaatcctacaaagagccgtgtgttaggattagggaattttcaattttgttattgcttttaaaagtttctctccatt
tatatcgtttgcttgtttgtatttttcagggtcagtaaagctttgtcgacctggggaatatataaattttaacatgcattccattttgacctgacaacccgtgtttgctggagtgcagTGTGAATTTGTTTGCAAGCCCATTCAAAGGTGTCCTGTTATCTTGGATTAAGCCAGAGTGAAACAGATGTCTCCAAAGTGCT
TAGCCAAGCAACAAGACAGAAGTCTTTTACCGTGACTCATCCAAGCTTCAAGCCTTATGTGGGAAACTGTTTTAAGACGAGAATGATTGTAGGAAGTCTTGTAATGCAGCTCTCAAGAATTTCTTAAGAATACAAGAACATTTGTAGGGAGGTCTTGTGATACATCATTCAAGAACTTCTTGGGAAGATATGAACGCTTG
TGAGCAAGTCTTACGATGCATCATTCAAGAACTTCTTGAGAAGATAAGATTGCTTGTAGGCAAGTCTTGTGATGCGTCTTTCGATAACTTCCTATCAAGCCATATGTGGGAGACTGTTCTAGAAGATAATAATGCTTGTAGGCAAGTCTGGTGGTGCATCCATCAAGAACTTCGTTAGAAGATAAGAATGCTTGTAGGAA
ATTCTTGTGATACATCTTGCAAGAGCTTTTCCACATGCAACAATACTTTAGGTTTTGCATTCATGATATTCTCTCTGAACTACAAAAGGTTTGGTACAGTTGTAATGAAGAAAAATGGCTAAATAGATTTTTTCCACTGAGCTGGGTCTCCTATGTATCTTGACAAAAATGTAGAGCAGAATTAAAGAATCTTCTGTAGG
GACT