sp|O23304|BLUS1_ARATH ----> Serine/threonine-protein kinase BLUS1
Intron 1 GTTCTTGTTT ... TTCACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.61 | 34 | 11 | 19 |
| A2 | 31.25 | 44 | 16 | 24 |
| A3 | 26.89 | 40.8 | 10 | 20 |
| A4 | 28.78 | 19.8 | 10 | 6 |
| A5 | 31.12 | 14.4 | 6 | 7 |
| A6 | 23.04 | 18 | 4.8 | 6 |
| A7 | 25.36 | 36.8 | 5 | 20 |
| A8 | 20.52 | 17.6 | 3 | 6 |
| A9 | 22.36 | 27.8 | 5 | 11 |
| A10 | 21.04 | 37.6 | 2 | 18 |
>TRINITY_DN111557_c0_g2_i6 from sample A3 / Example spliced isoformACAGAATCGACGCTTTTCTTAAACCATGGTTAAGTGCGCGCATCCCCCTTGCGGAGCATGGCATTCGCTTTAAGAAGAAAACATTGTAATATGCAGGCTCCCCTTCCCTGTCAGCGCTGGGCATGGAGTTCATGGTCCTGAATATAATAAAGCTTGATAGTCCTCAACAGTAATGCTGACGGCTATGGCCAGGGTTTGAA
GACAAGGTCCAGGCCACGTGCAGAAGCGTAATACTGACGGTACTTCATTATTGCCAACACCTTCTTTTATTCCGCACTGCTCCATTCTGTCTAGAGGCTTCGGCTTGTACGAATTCGGAGAATAATCACAGCTGCGCTTGCCGACGAAATCGAAGGGTATGTTTGGAGCCTTGGTTGGTTGCCATGCTGGTGGTATAAGT
GTGACCAGATTTTAGCACAAAGTTTCCTGACAAATAAGAACCATGGACCAAGAAACCGAGAAGAAATATCCAGCATTGTCATCTGATTACAAACTGTACGAGGAGGTTGGTCAAGGTGTTAGTGCATGTGTATACCGGGCACTTTGCATACCATTCAATGAGATTGTTGCTGTCAAAGTTTTGGACTTGGAGAAGTGCAA
TAGCAATCTGGATGGGGTTCGTCGAGAAGCACAAATAATGAGCTTGATTGACCATCCCAATGTTTTGAAGGCACATTGTTCTTTTATAGTAGAACATACTCTTTGGGTTGTAATGCCATACATGTCCGGGGGATCTTGTCTTCATATAATGAAATCTGCCTACCCAGATGGGTTTGAGGAGCAAATCATCGCAACATTTT
TGCGGGAAGTTTTGAGGGCACTGGAGTATCTACATAGTCATGGACATATACATCGAGATGTTAAGGCAGGGAACATCTTAGTTGAGGCAAGCGGCGCAGTTAAGTTAGCAGACTTTGGTGTCTCTGCTTGCATGTTTGACTCTGGCGATAGGCAACGCTCCAGGAACACTTTCGTGGGGACTCCATGCTGGATGGCACCT
GAAGTTATGGAACAACTTCATGGTTACGATTTCAAAGCTGATATATGGTCCCTTGGGATAACTGCATTAGAGCTTGCTCATGGTCATGCTCCATTTTCCAAATATCCTCCAATGAAGGTCTTGCTTATGACCTTGCAGAATGCACCCCCAGGTCTTGACTATGAAAGGGACAAGAAATTTTCCAAGTCTTTCAAGGAAAT
GGTAGCTATGTGCCTAGTAAAGGATCCTACAAAGCGACCAACATCAACAAAGCTTTTGAAACATCACTTCTTCAAGCATGCCCGTTCAAATGACTATGTGGCTCGAACAGTGCTTGATGGCTTACCTCCTCTTGGTGAACGCTGTAAGATCTTGAAGCTAAGAGAAATGGACAGAGTGGCACAAAATAAAATGGCTTATG
AAGAGAAAGAAGAGAGATCACAGAGTGAATACATCCGAGGTATTAGTGCTTGGAATTTTAATCTGGAGGATTTGAAGGCTCAGGCTGCTATGATTCAAGATGATGAAATCACCTCCTCAAAGGAACAGCCAGGGAATGTGAAACCAACGAAAGGGAGCAAGGAGTTGTCAAGAATGGCATCACAGTATGAGTCTCCTATT
ACTCGTAGTTCTCTCAAGGTGGAGACTTCTGAGAAGGATGGAGACTATGTTATGCCGGTTCAGCCAGGCCCTCTGTTATCTTCGTTGTCACTTCAATCTGGAAATGGTCTCAAAGAGCAATTTGATGTTATTGAGGATGACAGCCCAATTTGGCAGGAGTGTATCAAGTCCCAACACTCTAGAATGGATGCGTTGCAGGC
ACAGCAGAAAGATGATATTGAAAGTGTCAGGGATAGAAGGCCTGATTCAGATAAAGATCTTGGTGTTATAGAAGATGCTTACCGTGGTTCTATACACAGCCGCAAAGTTTTTAGTGGGCCACTTGGCTCAGAACACGTCATCACTTCTTCTAGAGGGGGAACTGGAGATGGAGACAGGGAAAGGCATGAAAGACGACCTC
AGCATAGAAATTTTAGTGGCCCATTATTGCATGGGTCAAAAGATATTGATAGCTCTTCCGAACCATCTAAATTATTAGAAGATAAATTGAAAGTAGCATTTGTACAGCAAAAAGGGCGCTTCAAAGTTACATCCGAGGATGTAGATCTCAATGAGACCCCCTCTCAAGCCACTTCAATGTCTCGGCCATCTTCTGCACCC
TGGAACAATGCTGCAACTATATCTTCTTCTGCAATCCTTCCACAGTTACAAAATATTCTAGAACAGAATATTATGCAAAGGGATCAAATAATTTTTTTGATGAAACATGCGAGCCAGGGAGAAATTCCTCCAGCTCGCCGCTTAACTGAGCTCAACTCCAAATCCACCACTTCAAGTGCTGCTGAAAATTTCATGTCAGA
ACCACTTTCTGATCGAGAACGCGGGATACTACAACAAGTCCATGAGATGGAACACAGGGTTGCAAGTCTTGATGATGAGTTGCAAAGAGTGAAGATGAGAAATATTCAGCTTGAACGACAACTGAATGCTGCCTTCAACAGGGAAGAGGAGGAAAGGATCAAAAGAGAGGAGGCAGCTCGTGAACAGGGATGAATAGGGT
GTTTTTTTTCTGCCTTAATGGAAGAGTTCAATCCAGAAGAATCTGGAGATGTTGAATTCAGGGGAAAATTTCCAGTTGCTCATATTTTGTAAATTCAGGCTATGGTGTGGTGGTTTATGATTGATCATCTTAATATATTCTTTCATTCTGCTCGATCTTGCAGAATATGGTGTCCATGTAATTTAGTATTTATGTTGAGA
TTCCAAACGACAAAAGATGGTTACGTGTCTGTAAAGGAGCCATTTTTTTTCAAAGGGTCCTAAAAAGTTGCACCTATTTGCTCTGGATCTGAACATGTATGTAGTCAATATTTGTCCTACAGAAAACTGTGGCAAGAGATAAATGATTCAGTCTGATTGGCTAAACTGGTAAAGATTGCTTTATGTTCAGTTTGTTTGGT
AGGGGAATCTTGTAAGATTTTCCAAGCTTTATGTCCAAGCTGCTGCTCTAAAATACATTTAGTAAGATTGTCCAAGCTTTAGGGGAATCTTGTAAGATTGTCCATGCCCATGGTTTCTTTTAGATTAATCATCAATATTGTGAGTGG
>TRINITY_DN111557_c0_g2_i1 from sample A3 / Example unspliced isoform:ACAGAATCGACGCTTTTCTTAAACCATGGTTAAGTGCGCGCATCCCCCTTGCGGAGCATGGCATTCGCTTTAAGAAGAAAACATTGTAATATGCAGGCTCCCCTTCCCTGTCAGCGCTGGGCATGGAGTTCATGGTCCTGAATATAATAAAGCTTGATAGTCCTCAACAGTAATGCTGACGGCTATGGCCAGGGTTTGAA
GACAAGGTCCAGGCCACGTGCAGAAGCGTAATACTGACGGTACTTCATTATTGCCAACACCTTCTTTTATTCCGCACTGCTCCATTCTGTCTAGAGGCTTCGGCTTGTACGAATTCGGAGAATAATCACAGCTGCGCTTGCCGACGAAATCGAAGGGTATGTTTGGAGCCTTGGTTGGTTGCCATGCTGGTGGTATAAGT
GTGACCAGATTTTAGCACAAAGTTTCCTGACAAATAAGAACCATGGACCAAGAAACCGAGAAGAAATATCCAGCATTGTCATCTGATTACAAACTGTACGAGGAGGTTGGTCAAGGTGTTAGTGCATGTGTATACCGGGCACTTTGCATACCATTCAATGAGATTGTTGCTGTCAAAGTTTTGGACTTGGAGAAGTGCAA
TAGCAATCTGGATGGGGTTCGTCGAGAAGCACAAATAATGAGCTTGATTGACCATCCCAATGTTTTGAAGGCACATTGTTCTTTTATAGTAGAACATACTCTTTGGGTTGTAATGCCATACATGTCCGGGGGATCTTGTCTTCATATAATGAAATCTGCCTACCCAGATGGGTTTGAGGAGCAAATCATCGCAACATTTT
TGCGGGAAGTTTTGAGGGCACTGGAGTATCTACATAGTCATGGACATATACATCGAGATGTTAAGGCAGGGAACATCTTAGTTGAGGCAAGCGGTGCAGTTAAGTTAGCGGACTTTGGTGTCTCTGCTTGCATGTTTGACTCTGGCGATAGGCAACGCTCCAGGAACACTTTCGTGGGGACTCCATGCTGgttcttgttt
ctagctgttcacttcattatggctttatacttttctgttttatgaagtgattgtaatggattgggtgctactgctaactgctgagtggaattcttctgttttcagcttaacattcctgtcttgtattttttgtttgaaataagaaagatgttcccttcttttccaattgttgttcactgcagGATGGCACCTGAAGTTAT
GGAACAACTTCATGGTTACGATTTCAAAGCTGATATATGGTCCCTTGGGATAACTGCATTAGAGCTTGCTCATGGTCATGCTCCATTTTCCAAATATCCTCCAATGAAGGTCTTGCTTATGACCTTGCAAAATGCACCTCCAGGTCTTGACTATGAAAGGGACAAGAAATTTTCCAAGTCTTTCAAGGAAATGGTAGCTA
TGTGCCTAGTAAAGGATCCTACAAAGCGACCAACATCAACAAAGCTTTTGAAACATCACTTCTTCAAGCATGCCCGTTCAAATGACTATGTGGCTCGAACAGTGCTTGATGGCTTACCTCCTCTTGGTGAACGCTGTAAGATCTTGAAGCTAAGAGAAATGGACAGAGTGGCACAAAATAAAATGGCTTATGAAGAGAAA
GAAGAGAGATCACAGAGTGAATACATCCGAGGTATTAGTGCTTGGAATTTTAATCTGGAGGATTTGAAGGCTCAGGCTGCTATGATTCAAGATGATGAAATCACCTCCTCAAAGGAACAGCCAGGGAATGTGAAACCAACGAAAGGGAGCAAGGAGTTGTCAAGAATGGCATCACAGTATGAGTCTCCTATTACTCGTAG
TTCTCTCAAGGTGGAGACTTCTGAGAAGGATGGAGACTATGTTATGCCGGTTCAGCCAGGCCCTCTGTTATCTTCGTTGTCACTTCAATCTGGAAATGGTCTCAAAGAGCAATTTGATGTTATTGAGGATGACAGCCCAATTTGGCAGGAGTGTATCAAGTCCCAACACTCTAGAATGGATGCGTTGCAGGCACAGCAGA
AAGATGATATTGAAAGTGTCAGGGATAGAAGGCCTGATTCAGATAAAGATCTTGGTGTTATAGAAGATGCTTACCGTGGTTCTATACACAGCCGCAAAGTTTTTAGTGGGCCACTTGGCTCAGAACACGTCATCACTTCTTCTAGAGGGGGAACTGGAGATGGAGACAGGGAAAGGCATGAAAGACGACCTCAGCATAGA
AATTTTAGTGGCCCATTATTGCATGGGTCAAAAGATATTGATAGCTCTTCCGAACCATCTAAATTATTAGAAGATAAATTGAAAGTAGCATTTGTACAGCAAAAAGGGCGCTTCAAAGTTACATCCGAGGATGTAGATCTCAATGAGACCCCCTCTCAAGCCACTTCAATGTCTCGGCCATCTTCTGCACCCTGGAACAA
TGCTGCAACTATATCTTCTTCTGCAATCCTTCCACAGTTACAAAATATTCTAGAACAGAATATTATGCAAAGGGATCAAATAATTTTTTTGATGAAACATGCGAGCCAGGGAGAAATTCCTCCAGCTCGCCGCTTAACTGAGCTCAACTCCAAATCCACCACTTCAAGTGCTGCTGAAAATTTCATGTCAGAACCACTTT
CTGATCGAGAACGCGGGATACTACAACAAGTCCATGAGATGGAACACAGGGTTGCAAGTCTTGATGATGAGTTGCAAAGAGTGAAGATGAGAAATATTCAGCTTGAACGACAACTGAATGCTGCCTTCAACAGGGAAGAGGAGGAAAGGATCAAAAGAGAGGAGGCAGCTCGTGAACAGGGATGAATAGGGTGTTTTTTT
TCTGCCTTAATGGAAGAGTTCAATCCAGAAGAATCTGGAGATGTTGAATTCAGGGGAAAATTTCCAGTTGCTCATATTTTGTAAATTCAGGCTATGGTGTGGTGGTTTATGATTGATCATCTTAATATATTCTTTCATTCTGCTCGATCTTGCAGAATATGGTGTCCATGTAATTTAGTATTTATGTTGAGATTCCAAAC
GACAAAAGATGGTTACGTGTCTGTAAAGGAGCCATTTTTTTTCAAAGGGTCCTAAAAAGTTGCACCTATTTGCTCTGGATCTGAACATGTATGTAGTCAATATTTGTCCTACAGAAAACTGTGGCAAGAGATAAATGATTCAGTCTGATTGGCTAAACTGGTAAAGATTGCTTTATGTTCAGTTTGTTTGGTAGGGGAAT
CTTGTAAGATTTTCCAAGCTTTATGTCCAAGCTGCTGCTCTAAAATACATTTAGTAAGATTGTCCAAGCTTTAGGGGAATCTTGTAAGATTGTCCATGCCCATGGTTTCTTTTAGATTAATCATCAATATTGTGAGTGG
Intron 2 GTAAGAACCC ... CTCTATGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25 | 36 | 0 | 12 |
| A2 | 25 | 42 | 3 | 14 |
| A3 | 20.93 | 34 | 0 | 9 |
| A4 | 55 | 9 | 2 | 11 |
| A5 | 33.33 | 14 | 0 | 7 |
| A6 | 16.67 | 15 | 0 | 3 |
| A7 | 20.93 | 34 | 0 | 9 |
| A8 | 31.25 | 11 | 0 | 5 |
| A9 | 18.52 | 22 | 0 | 5 |
| A10 | 17.82 | 41.5 | 1 | 9 |
>TRINITY_DN121311_c0_g3_i4 from sample A2 / Example spliced isoformGCTGTTCACTTCATTATGGCTTTATACTTTTCTGTTTTATGAAGTGATTGTAATGGATTGGGTGCTACTGCTAACTGCTGAGTGGAATTCTTCTGTTTTCAGCTTAACATTCCTGTCTTGTATTTTTTGTTTGAAATAAGAAAGATGTTCCCTTCTTTTCCAATTGTTGTTCACTGCAGGATGGCACCTGAAGTTATGGA
ACAACTTCATGGTTACGATTTCAAAGCTGATATATGGTCCCTTGGGATAACTGCATTAGAGCTTGCTCATGGTCATGCTCCATTTTCCAAATATCCTCCAATGAAGGTCTTGCTTATGACCTTGCAAAATGCACCTCCAGGTCTTGACTATGAAAGGGACAAGAAATTTTCCAAGGCATGTTTGCTGAGATTTTCTAACT
ATAAATCAAAGATTTACGCTAAATCTTGTTTTTTTTTCAAAACTGTATCT
>TRINITY_DN121311_c0_g3_i2 from sample A2 / Example unspliced isoform:GCTGTTCACTTCATTATGGCTTTATACTTTTCTGTTTTATGAAGTGATTGTAATGGATTGGGTGCTACTGCTAACTGCTGAGTGGAATTCTTCTGTTTTCAGCTTAACATTCCTGTCTTGTATTTTTTGTTTGAAATAAGAAAGATGTTCCCTTCTTTTCCAATTGTTGTTCACTGCAGGATGGCACCTGAAGTTATGGA
ACAACTTCATGGTTACGATTTCAAgtaagaaccctatgcttagattttgcagttgcagtgattgtaacaaacaatttaactgtttgaagaacacagatgggctattcttattttatgtgtttcttatgtgaatgatctccatggcaaatgattctctatgaagAGCTGATATATGGTCCCTTGGGATAACTGCATTAGAG
CTTGCTCATGGTCATGCTCCATTTTCCAAATATCCTCCAATGAAGGTCTTGCTTATGACCTTGCAGAATGCACCCCCAGGTCTTGACTATGAAAGGGACAAGAAATTTTCCAAGTCTTTCAAGGAAATGGTAGCTATGTGCCTGGTAAAGGATCCTACAAAGCGACCAACATCAACAAAGCTTTTGAAACATCACTTCTT
CAAGCATGCCCGTTCAAATGACTATGTGGCTCGAACAGTGCTTGATGGCTTACCTCCTCTTGGTGAACGCTGTAAGATCTTGAAGCTAAGAGAAATGGACAGAGTGGCACAAAATAAAATGGCTTATGAAGAGAAAGAAGAGAGATCACAGAGTGAATACATCCGAGGTATTAGTGCTTGGAATTTTAATCTGGAGGATT
TGAAGGCTCAGGCTGCTATGATTCAAGATGATGAAATCACCTCCTCAAAGGAACAGCCAGGGAATGTGAAACCAACGAAAGGGAGCAAGGAGTTGTCAAGAATGGCATCACAGTATGAGTCTCCTATTACTCGTAGTTCTCTCAAGGTGGAGACTTCTGAGAAGGATGGAGACTATGTTATGCCGGTTCAGCCAGGCCCT
CTGTTATCTTCGTTGTCACTTCAATCTGGAAATGGTCTCAAAGAGCAATTTGATGTTATTGAGGATGACAGCCCAATTTGGCAGGAGTGTATCAAGTCCCAACACTCTAGAATGGATGCGTTGCAGGCACAGCAGAAAGACGATATTGAAAGTGTCAGGGATAGAAGGCCTGATTCAGGTAAAGATCTTGGTGTTATAGA
AGATGCTTACCGTGGTTCTATACACAGCCGCAAAGTTTTTAGTGGGCCACTTGGCTCAGAACACGTCATCACTTCTTCTAGAGGGGGAACTGGAGATGGAGACAGGGAAAGGCATGAAAGACGACCTCAGCATAGAAATTTTAGTGGCCCATTATTGCATGGGTCAAAAGATATTGATAGCTCTTCCGAACCATCTAAAT
TATTAGAAGATAAATTGAAAGTAGCATTTGTACAGCAAAAAGGGCGCTTCAAAGTTACATCCGAGGATGTAGATCTCAATGAGACCCCCTCTCAAGCCACTTCAATGTCTCGGCCATCTTCTGCACCCTGGAACAATGCTGCAACTATATCTTCTTCTGCAATCCTTCCACAGTTACAAAATATTCTAGAACAGAATATT
ATGCAAAGGGATCAAATAATTTTTTTGATGAAACATGCGAGCCAGGGAGAAATTCCTCCAGCTCGCCGCTTAACTGAGCTCAACTCCAAATCCACCACTTCAAGTGCTGCTGAAAATTTCATGTCAGAACCACTTTCTGATCGAGAACGCGGGATACTACAACAAGTCCATGAGATGGAACACAGGGTTGCAAGTCTTGA
TGATGAGTTGCAAAGAGTGAAGATGAGAAATATTCAGCTTGAACGACAACTGAATGCTGCCTTCAACAGGGAAGAGGAGGAAAGGATCAAAAGAGAGGAAGCAGCTCGTGAACAGGGATGAATAGGGTGTTTTTTTTCTGCCTTAATGGAAGAGTTCAATCCAGAAGAATCTGGAGATGTTGAATTCAGGGGAAAATTTC
CAGTTGCTCATATTTTGTAAATTCAGGCTATGGTGTGGTGGTTTATGATTGATCATCTTAATATATTCTTTCATTCTGCTCGATCTTGCAGAATATGGTGTCCATGTAATTTAGTATTTATGTTGAGATTCCAAACGACAAAAGATGGTTACGTGTCTGTAAAGGAGCCATTTTTTTTCAAAGGGTCCTAAAAAGTTGCA
CCTATTTGCTCTGGATCTGAACATGTATGTAGTCAATATTTGTCCTACAGAAAACTGTGGCAAGAGATAAATGATTCAGTCTGATTGGCTAAACTGGTAAAGATTGCTTTATGTTCAGTTTGTTTGGTAGGGGAATCTAGTAAGATTTTCCAAGCTGCTGCTGTAAAATACATTTCGTAAGATTGTCCATGCC
Intron 3 GTCTTGACTA ... ATTTTCCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 81.79 | 10 | 48 | 50 |
| A2 | 73.44 | 10 | 29.7 | 29.7 |
| A3 | 76.01 | 10 | 31.7 | 33.7 |
| A4 | 72.19 | 11 | 26 | 32.3 |
| A5 | 90.43 | 1 | 13 | 9.3 |
| A6 | 100 | 0 | 12.3 | 10.3 |
| A7 | 80.69 | 7 | 29.3 | 32 |
| A8 | 78.17 | 6 | 22.3 | 23 |
| A9 | 70.28 | 12 | 25.3 | 33 |
| A10 | 72.45 | 12 | 29 | 35 |
>TRINITY_DN121311_c0_g3_i6 from sample A2 / Example spliced isoformGCTCTCTTTTGAGGAAATGGTGCATACTGTTGGATAATTAAAAATGGGATTGTTGAAGCACTTCCTTGTCTTTGGTTATGTATATATTACTTCTACAGTGCCATTAACTGTTTGTATTTACTAGTGGACATTAATGCACATTTTGTTTCATTACAATTCACTTTCACTTGAGTTTTCCTTCCTTTTCTTTCAGTTCTTTT
AAGATTGGATAGTGTCTGTGATGCAGGTCTTGCTTATGACCTTGCAGAATGCACCCCCAGTCTTTCAAGGAAATGGTAGCTATGTGCCTGGTAAAGGATCCTACAAAGCGACCAACATCAACAAAGCTTTTGAAACATCACTTCTTCAAGCATGCCCGTTCAAATGACTATGTGGCTCGAACAGTGCTTGATGGCTTACC
TCCTCTTGGTGAACGCTGTAAGATCTTGAAG
>TRINITY_DN121311_c0_g3_i2 from sample A2 / Example unspliced isoform:GCTGTTCACTTCATTATGGCTTTATACTTTTCTGTTTTATGAAGTGATTGTAATGGATTGGGTGCTACTGCTAACTGCTGAGTGGAATTCTTCTGTTTTCAGCTTAACATTCCTGTCTTGTATTTTTTGTTTGAAATAAGAAAGATGTTCCCTTCTTTTCCAATTGTTGTTCACTGCAGGATGGCACCTGAAGTTATGGA
ACAACTTCATGGTTACGATTTCAAGTAAGAACCCTATGCTTAGATTTTGCAGTTGCAGTGATTGTAACAAACAATTTAACTGTTTGAAGAACACAGATGGGCTATTCTTATTTTATGTGTTTCTTATGTGAATGATCTCCATGGCAAATGATTCTCTATGAAGAGCTGATATATGGTCCCTTGGGATAACTGCATTAGAG
CTTGCTCATGGTCATGCTCCATTTTCCAAATATCCTCCAATGAAGGTCTTGCTTATGACCTTGCAGAATGCACCCCCAGgtcttgactatgaaagggacaagaaattttccaagTCTTTCAAGGAAATGGTAGCTATGTGCCTGGTAAAGGATCCTACAAAGCGACCAACATCAACAAAGCTTTTGAAACATCACTTCTT
CAAGCATGCCCGTTCAAATGACTATGTGGCTCGAACAGTGCTTGATGGCTTACCTCCTCTTGGTGAACGCTGTAAGATCTTGAAGCTAAGAGAAATGGACAGAGTGGCACAAAATAAAATGGCTTATGAAGAGAAAGAAGAGAGATCACAGAGTGAATACATCCGAGGTATTAGTGCTTGGAATTTTAATCTGGAGGATT
TGAAGGCTCAGGCTGCTATGATTCAAGATGATGAAATCACCTCCTCAAAGGAACAGCCAGGGAATGTGAAACCAACGAAAGGGAGCAAGGAGTTGTCAAGAATGGCATCACAGTATGAGTCTCCTATTACTCGTAGTTCTCTCAAGGTGGAGACTTCTGAGAAGGATGGAGACTATGTTATGCCGGTTCAGCCAGGCCCT
CTGTTATCTTCGTTGTCACTTCAATCTGGAAATGGTCTCAAAGAGCAATTTGATGTTATTGAGGATGACAGCCCAATTTGGCAGGAGTGTATCAAGTCCCAACACTCTAGAATGGATGCGTTGCAGGCACAGCAGAAAGACGATATTGAAAGTGTCAGGGATAGAAGGCCTGATTCAGGTAAAGATCTTGGTGTTATAGA
AGATGCTTACCGTGGTTCTATACACAGCCGCAAAGTTTTTAGTGGGCCACTTGGCTCAGAACACGTCATCACTTCTTCTAGAGGGGGAACTGGAGATGGAGACAGGGAAAGGCATGAAAGACGACCTCAGCATAGAAATTTTAGTGGCCCATTATTGCATGGGTCAAAAGATATTGATAGCTCTTCCGAACCATCTAAAT
TATTAGAAGATAAATTGAAAGTAGCATTTGTACAGCAAAAAGGGCGCTTCAAAGTTACATCCGAGGATGTAGATCTCAATGAGACCCCCTCTCAAGCCACTTCAATGTCTCGGCCATCTTCTGCACCCTGGAACAATGCTGCAACTATATCTTCTTCTGCAATCCTTCCACAGTTACAAAATATTCTAGAACAGAATATT
ATGCAAAGGGATCAAATAATTTTTTTGATGAAACATGCGAGCCAGGGAGAAATTCCTCCAGCTCGCCGCTTAACTGAGCTCAACTCCAAATCCACCACTTCAAGTGCTGCTGAAAATTTCATGTCAGAACCACTTTCTGATCGAGAACGCGGGATACTACAACAAGTCCATGAGATGGAACACAGGGTTGCAAGTCTTGA
TGATGAGTTGCAAAGAGTGAAGATGAGAAATATTCAGCTTGAACGACAACTGAATGCTGCCTTCAACAGGGAAGAGGAGGAAAGGATCAAAAGAGAGGAAGCAGCTCGTGAACAGGGATGAATAGGGTGTTTTTTTTCTGCCTTAATGGAAGAGTTCAATCCAGAAGAATCTGGAGATGTTGAATTCAGGGGAAAATTTC
CAGTTGCTCATATTTTGTAAATTCAGGCTATGGTGTGGTGGTTTATGATTGATCATCTTAATATATTCTTTCATTCTGCTCGATCTTGCAGAATATGGTGTCCATGTAATTTAGTATTTATGTTGAGATTCCAAACGACAAAAGATGGTTACGTGTCTGTAAAGGAGCCATTTTTTTTCAAAGGGTCCTAAAAAGTTGCA
CCTATTTGCTCTGGATCTGAACATGTATGTAGTCAATATTTGTCCTACAGAAAACTGTGGCAAGAGATAAATGATTCAGTCTGATTGGCTAAACTGGTAAAGATTGCTTTATGTTCAGTTTGTTTGGTAGGGGAATCTAGTAAGATTTTCCAAGCTGCTGCTGTAAAATACATTTCGTAAGATTGTCCATGCC
Intron 4 GTAGGTAAAG ... TTTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30 | 35 | 12 | 18 |
| A2 | 20 | 30 | 10 | 5 |
| A3 | 23.53 | 26 | 7 | 9 |
| A4 | 23.08 | 20 | 2 | 10 |
| A5 | 33.33 | 6 | 2 | 4 |
| A6 | 19.35 | 50 | 6 | 18 |
| A7 | 21.31 | 72 | 18 | 21 |
| A8 | 23.58 | 94 | 27 | 31 |
| A9 | 20.55 | 58 | 17 | 13 |
| A10 | 19.63 | 88 | 22 | 21 |
>TRINITY_DN41951_c0_g1_i2 from sample A9 / Example spliced isoformTTCGGAGACAAACAGCCCCAACCACGAGGCGATCTGACCCACTGGAGGCCATAACTTTTAACCCTAACCACAGAAGCGGCGCTTTTCTTAAACCATGGTTAAGTGCGCGCATCCCCCTTGCGGAGCATGGCATTCGCTTTAAAAAGAAAACATTGTAATATGCAGGCTCCCCTTCCCTGTCAGCGCTGGTCATGGAGTTC
ATGGTCCTGAATATAATAAAGCTTGATAGTCCTCAACAGTAATGCTGACGGCTATGGCCAGGGTTTGAAGACAAGGTCCAGGCCACGTGCAGAAGCGTAATACTGACGGTACTTCATTATTGCCAACACCTTCTTTTATTCCGCACTGCTCCATTCTGTCCAGAGGCTTCGGCTTGTACGAATTCGGAGAATAATCACAG
CTGCGCTTGCCGACGAAATCGAAGGGTATGTTTGGAGCCTTGGTTGGTTGCCATGCTGGTGTGACCAGATTTTAGCACAAAGTTTCCTGACAAATAAGAACCATGGACCAAGAAACCGAGAAGAAATATCCAGCATTGTCATCTGATTACAAACTGTACGAGGAGGTTGGTCAAGGTGTTAGTGCAGCTGTATACCGGGC
ACTTTGCATACCATTCAATGAGATTGTTGCTGTCAAAGTTTTGGACTTGGAGAAGTGCAATAGCAATCTGGATGGGGTTCGTCGAGAAGCACAAATAATGAGCTTGATTGACCATCCCAATGTTTTGAAGGCACATTGTTCTTTTATAGTAGAACATACTCTTTGGGTTGTAATGCCATACATGTCCGGGGGATCTTGTC
TTCATATAATGAAATCTGCCTACCCAGATGGGTTTGAGGAGCAAATCATCGCAACATTTTTGCGGGAAGTTTTGAGGGCACTGGAGTATCTACATAGTCATGGACATATACATCGAGATGTTAAGGCAGGGAACATCTTAGTTGAGGCAAGCGGCGCAGTTAAGTTAGCAGACTTTGGTGTCTCTGCTTGCATGTTTGAC
TCTGGTGATAGGCAACGCTCCAGGAACACTTTCGTGGGGACTCCATGCTGGATGGCACCTGAAGTTATGGAACAACTTCATGGTTACGATTTCAAAGCTGATATATGGTCCCTTGGGATAACTGCATTAGAGCTTGCTCATGGTCATGCTCCATTTTCCAAATATCCTCCAATGAAGGTCTTGCTTATGACCTTGCAGAA
TGCACCCCCAGGTCTTGACTATGAAAGGGACAAGAAATTTTCCAAGTCTTTCAAGGAAATGGTAGCTATGTGCCTAGTAAAGGATCCTACAAAGCGACCAACATCAACAAAGCTTTTGAAACATCACTTCTTCAAGCATGCCCGTTCAAATGACTATGTGGCTCGAACAGTGCTTGATGGCTTACCTCCTCTTGGTGAAC
GCTGTAAGATCTTGAAGCTAAGAGAAATGGACAGAGTGGCACAAAATAAAATGGCTTATGAAGAGAAAGAAGAGAGATCACAGAGTGAATACATCCGAGGTATTAGTGCTTGGAATTTTAATCTGGAGGATTTGAAGGCTCAGGCTGCTATGATTCAAGATGATGAAATCACCTCCTCAAAGGAACAGCCAGGGAATGTG
AAACCAACGAAAGGGAGCAAGGAGTTGTCAAGAATGGCATCACAGTATGAGTCTCCTATTACTCGTAGTTCTCTCAAGGTGGAGACTTCTGAGAAGGATGGAGACTATGTTATGCCGGTTCAGCCAGGCCCTCTGTTATCTTCGTTGTCACTTCAATCTGGAAATGGTCTCAAAGAGCAATTTGATGTTATTGAGGATGA
CAGCCCAATTTGGCAGGAGTGTATCAAGTCCCAACACTCTAGAATGGATGCGTTGCAGGCACAGCAGAAAGATGATATTGAAAGTGTCAGGGATAGAAGGCCTGATTCAGATAAAGATCTTGGTGTTATAGAAGATGCTTACCGTGGTTCTATACACAGCCGCAAAGTTTTTAGTGGGCCACTTGGCTCAGAACACGTCA
TCACTTCTTCTAGAGGGGGAACTGGAGATGGAGACAGGGAAAGGCATGAAAGACGACCTCAGCATAGAAATTTTAGTGGCCCATTATTGCATGGGTCAAAAGATATTGATAGCTCTTCCGAACCATCTAAATTATTAGAAGATAAATTGAAAGTAGCATTTGTACAGCAAAAAGGGCGCTTCAAAGTTACATCCGAGGAT
GTAGATCTCAATGAGACCCCCTCTCAAGCCACTTCAATGTCTCGGCCATCTTCTGCACCCTGGAACAATGCTGCAACTATATCTTCTTCTGCAATCCTTCCACAGTTACAAAATATTCTAGAACAGAATATTATGCAAAGGGATCAAATAATTTTTTTGATGAAACATGCAAGCCAGGGAGAAATTCCTCCAGCTCGCCG
CTTAACTGAGCTCAACTCCAAATCCACCACTTCAAGTGCTGCTGAAAATTTCATGTCAGAACCACTTTCTGATCGAGAACGCGGGATACTACAACAAGTCCATGAGATGGAACACAGGGTTGCAAGTCTTGATGATGAGTTGCAAAGAGTGAAGATGAGAAATATTCAGCTTGAACGACAACTGAATGCTGCCTTCAACA
GGGAAGAGGAGGAAAGGATCAAAAGAGAGGAAGCAGCTCGTGAACAGGGATGAATAGGGTGTTTTTTTTCTGCCTTAATGGAAGAGTTCAATCCAGAAGAATCTGGAGATGTTGAATTCAGGGGAAAATTTCCAGTTGCTCATATTTTGTAAATTCAGGCTATGGTGTGGTGGTTTATGATTGATCATCTTAATATATTC
TTTCATTCTGCTCGATCTTGCAGAATATGGTGTCCATGTAATTTAGTATTTATGTTGAGATTCCAAACGACAAAAGATGGTTACGTGTCTGTAAAGGAGCCATTTTTTTTCAAAGGGTCCTAAAAAGTTGCACCTATTTGCTCTGGATCTGAACATGTATGTAGTCAATATTTGTCCTACAGAAAACTGTGGCAAGAGAT
AAATGATTCAGTCTGATTGGCTAAACTGGTAAAGATTGCTTTATGTTCAGTTTGTTTGGTAGGGGAATCTTGTAAGATTTTCCAAGCTTTATGTCCAAGCTGCTGCTCTAAAATACATTTAGTAAGATTGTCCAAGCTTTAGGGGAATCTTGTAAGATTGTCCATGCCCATGGTTTCTTTTAGATTAATCATCAATATTG
TGAGTGGTATGGTGAACTATCTAGGGGCTATCTAGCCAGTTTAATACCTATAATTGTCAGGTTATGGTGTGGTGGTTTCTGATTGATCATCTTAATGTATTCTTTCATTCTGCTCGATCTTGCAGAATATGGTGTCCATGTAATTTAGTATTTATGTTGAGATTCCAGACGACAAAAGATGGTTACGAGTCTGTAAAGGA
ACCATTTTTTTTCAAATGGTCTCCTGAAATTTTGCACCTATTTGCTCTGGATCTGAACATGTATGTAGTCAATATTTGTCCTACAGAAAACTGTGGCAAGAGATAAATGATTCAGTCTGATTGGCTAAACTGGTAAAGATTGCTTTATGTTCAGTTTGTTTGGTAGGGGAATCTAGTAAGATTTTCCAAGCTGCTGCTGT
AAAATACATTTCGTAAGATTGTCCATGCCCATGTTAGTTTCTGTTAGATAAATCTCTAATATTGTGATAGTATGGTGAACTATCTAGGGGCTATCTGGCCAGTTTGTCTTTCTGGGCGTTAATTGATGTATGAATGCAATTTACTTGCCAGGTTTTTACCCTAATGGCATTGAAAACTTCCAATAGCTTTAACGAGCCTA
AAGCACTAGCGTTTATGATCAAACCATGAAGAACTATTCAATATGAATCAAAAGTTGTGTGGGGCA
>TRINITY_DN41951_c0_g1_i1 from sample A9 / Example unspliced isoform:CGTTGCAGGCACAGCAGAAAGATGATATTGAAAGTGTCAGGGATAGAAGGCCTGATTCAGATAAAGATCTTGGTGTTATAGAAGATGCTTACCGTGGTTCTATACACAGCCGCAAAGTTTTTAGTGGGCCACTTGGCTCAGAACACGTCATCACTTCTTCTAGAGGGGGAACTGGAGATGGAGACAGGGAAAGGCATGAA
AGACGACCTCAGCATAGAAATTTTAGTGGCCCATTATTGCATGGGTCAAAAGATATTGATAGCTCTTCCGAACCATCTAAATTATTAGAAGATAAATTGAAAGTAGCATTTGTACAGCAAAAAGGGCGCTTCAAAGTTACATCCGAGGATGTAGATCTCAATGAGACCCCCTCTCAAGCCACTTCAATGTCTCGGCCATC
TTCTGCACCCTGGAACAATGCTGCAACTATATCTTCTTCTGCAATCCTTCCACAGTTACAAAATATTCTAGAACAGAATATTATGCAAAGGGATCAAATAATTTTTTTGATGAAACATGCAAGCCAGGGAGAAATTCCTCCAGCTCGCCGCTTAACTGAGCTCAACTCCAAATCCACCACTTCAAGTGCTGCTGAAAATT
TCATGTCAGAACCACTTTCTGATCGAGAACGCGGGATACTACAACAAGTCCATGAGATGGAACACAGgtaggtaaagaaatttcttaatgctaagcaaattttattatgctgtctgagatatggacaaatatgaatgtaatctgtttgagatattgacaaatatgaatgtcttactgtttttttcagGGTTGCAAGTCTT
GATGATGAGTTGCAAAGAGTGAAGATGAGAAATATTCAGCTTGAACGACAACTGAATGCTGCCTTCAACAGGGAAGAGGAGGAAAGGATCAAAAGAGAGGAAGCAGCTCGTGAACAGGGATGAATAGGGTGTTTTTTTTCTGCCTTAATGGAAGAGTTCAATCCAGAAGAATCTGGAGATGTTGAATTCAGGGGAAAATT
TCCAGTTGCTCATATTTTGTAAATTCAGGCTATGGTGTGGTGGTTTATGATTGATCATCTTAATATATTCTTTCATTCTGCTCGATCTTGCAGAATATGGTGTCCATGTAATTTAGTATTTATGTTGAGATTCCAAACGACAAAAGATGGTTACGTGTCTGTAAAGGAGCCATTTTTTTTCAAAGGGTCCTAAAAAGTTG
CACCTATTTGCTCTGGATCT
Intron 5 GTGGGGACTC ... TTCACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.48 | 37 | 15 | 19 |
| A2 | 33.33 | 44 | 20 | 24 |
| A3 | 29.2 | 40 | 13 | 20 |
| A4 | 29.87 | 27 | 17 | 6 |
| A5 | 33.33 | 16 | 9 | 7 |
| A6 | 27.66 | 17 | 7 | 6 |
| A7 | 27.93 | 40 | 11 | 20 |
| A8 | 23.08 | 15 | 3 | 6 |
| A9 | 26.44 | 32 | 12 | 11 |
| A10 | 24.79 | 44 | 11 | 18 |
>TRINITY_DN109344_c0_g1_i3 from sample A4 / Example spliced isoformGGAGGCCATAACTTTTAACCCTAACCACAGAATCGACGCTTTTCTTAAACCATGGTTAAGTGCGCGCATCCCCCTTGCGGAGCATGGCATTCGCTTTAAGAAGAAAACATTGTAATATGCAGGCTCCCCTTCCCTGTCAGCGCTGGGCATGGAGTTCATGGTCCTGAATATAATAAAGCTTGATAGTCCTCAACAGTAAT
GCTGACGGCTATGGCCAGGGTTTGAAGACAAGGTCCAGGCCACGTGCAGAAGCGTAATACTGACGGTACTTCATTATTGCCAACACCTTCTTTTATTCCGCACTGCTCCATTCTGTCCAGAGGCTTCGGCTTGTACGAATTCGGAGAATAATCACAGCTGCGCTTGCCGACGAAATCGAAGGGTATGTTTGGAGCCTTGG
TTGGTTGCCATGCTGGTGTGACCAGATTTTAGCACAAAGTTTCCTGACAAATAAGAACCATGGACCAAGAAACCGAGAAGAAATATCCAGCATTGTCATCTGATTACAAACTGTACGAGGAGGTTGGTCAAGGTGTTAGTGCAGCTGTATACCGGGCACTTTGCATACCATTCAATGAGATTGTTGCTGTCAAAGTTTTG
GACTTGGAGAAGTGCAATAGCAATCTGGATGGGGTTCGTCGAGAAGCACAAATAATGAGCTTGATTGACCATCCCAATGTTTTGAAGGCACATTGTTCTTTTATAGTAGAACATACTCTTTGGGTTGTAATGCCATACATGTCCGGGGGATCTTGTCTTCATATAATGAAATCTGCCTACCCAGATGGGTTTGAGGAGCA
AATCATCGCAACATTTTTGCGGGAAGTTTTGAGGGCACTGGAGTATCTACATAGTCATGGACATATACATCGAGATGTTAAGGCAGGGAACATCTTAGTTGAGGCAAGCGGTGCAGTTAAGTTAGCGGACTTTGGTGTCTCTGCTTGCATGTTTGACTCTGGCGATAGGCAACGCTCCAGGAACACTTTCGATGGCACCT
GAAGTTATGGAACAACTTCATGGTTACGATTTCAAAGCTGATATATGGTCCCTTGGGATAACTGCATTAGAGCTTGCTCATGGTCATGCTCCATTTTCCAAATATCCTCCAATGAAGGTCTTGCTTATGACCTTGCAAAATGCACCTCCAGGTCTTGACTATGAAAGGGACAAGAAATTTTCCAAGTCTTTCAAGGAAAT
GGTAGCTATGTGCCTGGTAAAGGATCCTACAAAGCGACCAACATCAACAAAGCTTTTGAAACATCACTTCTTCAAGCATGCCCGTTCAAATGACTATGTGGCTCGAACAGTGCTTGATGGCTTACCTCCTCTTGGTGAACGCTGTAAGATCTTGAAGCTAAGAGAAATGGACAGAGTGGCACAAAATAAAATGGCTTATG
AAGAGAAAGAAGAGAGATCACAGAGTGAATACATCCGAGGTATTAGTGCTTGGAATTTTAATCTGGAGGATTTGAAGGCTCAGGCTGCTATGATTCAAGATGATGAAATCACCTCCTCAAAGGAACAGCCAGGGAATGTGAAACCAATGAAAGGGAGTAAGGAGTTGTCAAGAATGGCATCACAGTATGAGTCTCCTATT
ACTCGTAGTTCTCTCAAGGTGGAGACTTCTGAGAAGGATGGAGACTATGTTATGCCGGTTCAGCCAGGCCCTCTGTTATCTTCGTTGTCACTTCAATCTGGAAATGGTCTCAAAGAGCAATTTGATGTTATTGAGGATGACAGCCCAATTTGGCAGGAGTGTATCAAGTCCCAACACTCTAGAATGGATGATGCGTTGCA
GGCACAGCAGAAAGACGATATTGAAAGTGTCAGGGATAGAAGGCCTGATTCAGATAAAGATCTTGGTGTTATAGAAGATGCTTACCGTGGTTCTATACACAGCCGCAAAGTTTTTAGTGGGCCACTTGGCTCAGAACACGTCATCACTTCTTCTAGAGGGGGAACTGGAGATGGAGACAGGGAAAGGCATGAAAGACGAC
CTCAGCATAGAAATTTTAGTGGCCCATTATTGCATGGGTCAAAAGATATTGATAGCTCTTCCGAACCATCTAAATTATTAGAAGATAAATTGAAAGTAGCATTTGTACAGCAAAAAGGGCGCTTCAAAGTTACATCCGAGGATGTAGATCTCAATGAGACCCCCTCTCAAGCCACTTCAATGTCTCGGCCATCTTCTGCA
CCCTGGAACAATGCTGCAACTATATCTTCTTCTGCAATCCTTCCACAGTTACAAAATATTCTAGAACAGAATATTATGCAAAGGGATCAAATAATTTTTTTGATGAAACATGCGAGCCAGGGAGAAATTCCTCCAGCTCGCCGCTTAACTGAGCTCAACTCCAAATCCACCACTTCAAGTGCTGCTGAAAATTTCATGTC
AGAACCACTTTCTGATCGAGAACGCGGGATACTACAACAAGTCCATGAGATGGAACACAGGGTTGCAAGTCTTGATGATGAGTTGCAAAGAGTGAAGATGAGAAATATTCAGCTTGAACGACAACTGAATGCTGCCTTCAACAGGGAAGAGGAGGAAAGGATCAAAAGAGAGGAGGCAGCTCGTGAACAGGGATGAATAT
GGTGTTTTTTTTCTGCCTTCATGGAAGAGTTCAATCCAGAAGAATCTGGAGATGTTGAATTCAGGGGAAAATTTCCAGTTGCTCATATTTTGTAAATTCAGGCTATGGTGTGGTGGTTTATGATTGATCATCTTAATATATTCTTTCATTCTGCTCGATCTTGCAGAATATGGTGTCCATGTAATTTAGTATTTATGTTG
AGATTCCAAACGACAAAAGATGGTTACGTGTCTGTAAAGGAGCCATTTTTTTTCAAAGGGTCCTAAAAAGTTGCACCTATTTGCTCTGGATCTGAACATGTATGTAGTCAATATTTGTCCTACAGAAAACTGTGGCAAGAGATAAATGATTCAGTCTGATTGGCTAAACTGGTAAAGATTGCTTTATGTTCAGTTTGTTT
GGTAGGGGAATCTTGTAAGATTTTCCAAGCTTTATGTCCAAGCTGCTGCTCTAAAATACATTTAGTAAGATTGTCCAAGCTTTAGGGGAATCTTGTAAGATTGTCCATGCCCATGGTTTCTTTTAGATTAATCATCAATATTGTGAGTGGTATGGTGAACTATCTAGGAG
>TRINITY_DN109344_c0_g1_i4 from sample A4 / Example unspliced isoform:ATGGGGTTCGTCGAGAAGCACAAATAATGAGCTTGATTGACCATCCCAATGTTTTGAAGGCACATTGTTCTTTTATAGTAGAACATACTCTTTGGGTTGTAATGCCATACATGTCCGGGGGATCTTGTCTTCATATAATGAAATCTGCCTACCCAGATGGGTTTGAGGAGCAAATCATCGCAACATTTTTGCGGGAAGTT
TTGAGGGCACTGGAGTATCTACATAGTCATGGACATATACATCGAGATGTTAAGGCAGGGAACATCTTAGTTGAGGCAAGCGGCGCAGTTAAGTTAGCAGACTTTGGTGTCTCTGCTTGCATGTTTGACTCTGGCGATAGGCAACGCTCCAGGAACACTTTCgtggggactccatgctggttcttgtttctagctgttca
cttcattatggctttatacttttctgttttatgaagtgattgtaatggattgggtgctactgctaactgctgagtggaattcttctgttttcagcttaacattcctgtcttgtattttttgtttgaaataagaaagatgttcccttcttttccaattgttgttcactgcagGATGGCACCTGAAGTTATGGAACAACTTC
ATGGTTACGATTTCAAAGCTGATATATGGTCCCTTGGGATAACTGCATTAGAGCTTGCTCATGGTCATGCTCCATTTTCCAAATATCCTCCAATGAAGGTCTTGCTTATGACCTTGCAAAATGCACCTCCAGGTCTTGACTATGAAAGGGACAAGAAATTTTCCAAGTCTTTCAAGGAAATGGTAGCTATGTGCCTGGTA
AAGGATCCTACAAAGCGACCAACATCAACAAAGCTTTTGAAACATCACTTCTTCAAGCATGCCCGTTCAAATGACTATGTGGCTCGAACAGTGCTTGATGGCTTACCTCCTCTTGGTGAACGCTGTAAGATCTTGAAGCTAAGAGAAATGGACAGAGTGGCACAAAATAAAATGGCTTATGAAGAGAAAGAAGAGAGATC
ACAGAGTGAATACATCCGAGGTATTAGTGCTTGGAATTTTAATCTGGAGGATTTGAAGGCTCAGGCTGCTATGATTCAAGATGATGAAATCACCTCCTCAAAGGAACAGCCAGGGAATGTGAAACCAACGAAAGGGAGCAAGGAGTTGTCAAGAATGGCATCACAGTATGAGTCTCCTATTACTCGTAGTTCTCTCAAGG
TGGAGACTTCTGAGAAGGATGGAGACTATGTTATGCCGGTTCAGCCAGGCCCTCTGTTATCTTCGTTGTCACTTCAATCTGGAAATGGTCTCAA
Intron 6 GTAAAGATCT ... ATGGAGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.7 | 30 | 79 | 59 |
| A2 | 78.31 | 18 | 56 | 74 |
| A3 | 77.78 | 14 | 65 | 33 |
| A4 | 73.71 | 23 | 69 | 60 |
| A5 | 78.38 | 4 | 22 | 7 |
| A6 | 71.58 | 27 | 65 | 71 |
| A7 | 69.65 | 56 | 107 | 150 |
| A8 | 71.32 | 38 | 97 | 92 |
| A9 | 72.65 | 32 | 75 | 95 |
| A10 | 68.61 | 43 | 76 | 112 |
>TRINITY_DN43772_c1_g1_i2 from sample A7 / Example spliced isoformCCTTGCGGAGCATGGCATTCGCTTTAAGAAGAAAACATTGTAATATGCAGGCTCCCCTTCCCTGTCAGCGCTGGGCATGGAGTTCATGGTCCTGAATATAATAAAGCTTGATAATCCTCAACAGTAATGCTGACGGCTATGGCCAGGGTTTGAAGACAAGGTCCAGGCCACGTGCAGAAGCGTAATACTGACGGTACTTC
ATTATTGCCAACACCTTCTTTTATTCCGCACTGCTCCATTCTGTCCAGAGGCTTCGGCTTGTACGAATTCGGAGAATAATCACAGCTGCGCTTGCCGACGAAATCGAAGGGTATGTTTGGAGCCTTGGTTGGTTGCCATGCTGGTGGTATAAGTGTGACCAGATTTTAGCACAAAGTTTCCTGACAAATAAGAACCATGG
ACCAAGAAACCGAGAAGAAATATCCAGCATTGTCATCTGATTACAAACTGTACGAGGAGGTTGGTCAAGGTGTTAGTGCATGTGTATACCGGGCACTTTGCATACCATTCAATGAGATTGTTGCTGTCAAAGTTTTGGACTTGGAGAAGTGCAATAGCAATCTGGATGGGGTTCGTCGAGAAGCACAAATAATGAGCTTG
ATTGACCATCCCAATGTTTTGAAGGCACATTGTTCTTTTATAGTAGAACATACTCTTTGGGTTGTAATGCCATACATGTCCGGGGGATCTTGTCTTCATATAATGAAATCTGCCTACCCAGATGGGTTTGAGGAGCAAATCATCGCAACATTTTTGCGGGAAGTTTTGAGGGCACTGGAGTATCTACATAGTCATGGACA
TATACATCGAGATGTTAAGGCAGGGAACATCTTAGTTGAGGCAAGCGGTGCAGTTAAGTTAGCGGACTTTGGTGTCTCTGCTTGCATGTTTGACTCTGGTGATAGGCAACGCTCCAGGAACACTTTCGTGGGGACTCCATGCTGGATGGCACCTGAAGTTATGGAACAACTTCATGGTTACGATTTCAAAGCTGATATAT
GGTCCCTTGGGATAACTGCATTAGAGCTTGCTCATGGTCATGCTCCATTTTCCAAATATCCTCCAATGAAGGTCTTGCTTATGACCTTGCAAAATGCACCTCCAGGTCTTGACTATGAAAGGGACAAGAAATTTTCCAAGTCTTTCAAGGAAATGGTAGCTATGTGCCTAGTAAAGGATCCTACAAAGCGACCAACATCA
ACAAAGCTTTTGAAACATCACTTCTTCAAGCATGCCCGTTCAAATGACTATGTGGCTCGAACAGTGCTTGATGGCTTACCTCCTCTTGGTGAACGCTGTAAGATCTTGAAGCTAAGAGAAATGGACAGAGTGGCACAAAATAAAATGGCTTATGAAGAGAAAGAAGAGAGATCACAGAGTGAATACATCCGAGGTATTAG
TGCTTGGAATTTTAATCTGGAGGATTTGAAGGCTCAGGCTGCTATGATTCAAGATGATGAAATCACCTCCTCAAAGGAACAGCCAGGGAATGTGAAACCAATGAAAGGGAGTAAGGAGTTGTCAAGAATGGCATCACAGTATGAGTCTCCTATTACTCGTAGTTCTCTCAAGGTGGAGACTTCTGAGAAGGATGGAGACT
ATGTTATGCCGGTTCAGCCAGGCCCTCTGTTATCTTCGTTGTCACTTCAATCTGGAAATGGTCTCAAAGAGCAATTTGATGTTATTGAGGATGACAGCCCAATTTGGCAGGAGTGTATCAAGTCCCAACACTCTAGAATGGATGATGCGTTGCAGGCACAGCAGAAAGATGATATTGAAAGTGTCAGGGATAGAAGGCCT
GATTCAGGGAAAGGCATGAAAGACGACCTCAGCATAGAAATTTTAGTGGCCCATTATTGCATGGGTCAAAAGATATTGATAGCTCTTCCGAACCATCTAAATTATTAGAAGATAAATTGAAAGTAGCATTTGTACAGCAAAAAGGGCGCTTCAAAGTTACATCCGAGGATGTAGATCTCAATGAGACCCCCTCTCAAGCC
ACTTCAATGTCTCGGCCATCTTCTGCACCCTGGAACAATGCTGCAACTATATCTTCTTCTGCAATCCTTCCACAGTTACAAAATATTCTAGAACAGAATATTATGCAAAGGGATCAAATAATTTTTTTGATGAAACATGCAAGCCAGGGAGAAATTCCTCCAGCTCGCCGCTTAACTGAGCTCAACTCCAAATCCACCAC
TTCAAGTGCTGCTGAAAATTTCATGTCAGAACCACTTTCTGATCGAGAACGCGGGATACTACAACAAGTCCATGAGATGGAACACAGGGTTGCAAGTCTTGATGATGAGTTGCAAAGAGTGAAGATGAGAAATATTCAGCTTGAACGACAACTGAATGCTGCCTTCAACAGGGAAGAGGAGGAAAGGATCAAAAGAGAGG
AAGCAGCTCGTGAACAGGGATGAATATGGTGTTTTTTTTCTGCCTTCATGGAAGAGTTCAATCCAGAAGAATCTGGAGATGTTGAATTCAGGGGAAAATTTCCAGTTGCTCATATTTTGTAAATTCAGGCTATGGTGTGGTGGTTTATGATTGATCATCTTAATATATTCTTTCATTCTGCTCGATCTTGCAGAATATGG
TGTCCATGTAATTTAGTATTTATGTTGAGATTCCAAACGACAAAAGATGGTTACGTGTCTGTAAAGGAGCCATTTTTTTTCAAAGGGTCCTAAAAAGTTGCACCTATTTGCTCTGGATCTGAACATGTATGTAGTCAATATTTGTCCTACAGAAAACTGTGGCAAGAGATAAATGATTCAGTCTGATTGGCTAAACTGGT
AAAGATTGCTTTATGTTCAGTTTGTTTGGTAGGGGAATCTTGCAGAATATGGTGTCCATGTAATTTAGTATTTATGTTGAGATTCCAGACGACAAAAGATGGTTACGAGTCTGTAAAGGAACCATTTTTTTTCAAATGGTCTCCTGAAATTTTGCACCTATTTGCTCTGGATCTGAACATGTATGTAGTCAATATTTGTC
CTACAGAAAACTGTGGCAAGAGATAAATGATTCAGTCTGATTGGCTAAACTGGTAAAGATTGCTTTATGTTCAGTTTGTTTGGTAGGGGAATCT
>TRINITY_DN43772_c1_g1_i1 from sample A7 / Example unspliced isoform:CCTTGCGGAGCATGGCATTCGCTTTAAGAAGAAAACATTGTAATATGCAGGCTCCCCTTCCCTGTCAGCGCTGGGCATGGAGTTCATGGTCCTGAATATAATAAAGCTTGATAATCCTCAACAGTAATGCTGACGGCTATGGCCAGGGTTTGAAGACAAGGTCCAGGCCACGTGCAGAAGCGTAATACTGACGGTACTTC
ATTATTGCCAACACCTTCTTTTATTCCGCACTGCTCCATTCTGTCCAGAGGCTTCGGCTTGTACGAATTCGGAGAATAATCACAGCTGCGCTTGCCGACGAAATCGAAGGGTATGTTTGGAGCCTTGGTTGGTTGCCATGCTGGTGGTATAAGTGTGACCAGATTTTAGCACAAAGTTTCCTGACAAATAAGAACCATGG
ACCAAGAAACCGAGAAGAAATATCCAGCATTGTCATCTGATTACAAACTGTACGAGGAGGTTGGTCAAGGTGTTAGTGCATGTGTATACCGGGCACTTTGCATACCATTCAATGAGATTGTTGCTGTCAAAGTTTTGGACTTGGAGAAGTGCAATAGCAATCTGGATGGGGTTCGTCGAGAAGCACAAATAATGAGCTTG
ATTGACCATCCCAATGTTTTGAAGGCACATTGTTCTTTTATAGTAGAACATACTCTTTGGGTTGTAATGCCATACATGTCCGGGGGATCTTGTCTTCATATAATGAAATCTGCCTACCCAGATGGGTTTGAGGAGCAAATCATCGCAACATTTTTGCGGGAAGTTTTGAGGGCACTGGAGTATCTACATAGTCATGGACA
TATACATCGAGATGTTAAGGCAGGGAACATCTTAGTTGAGGCAAGCGGTGCAGTTAAGTTAGCGGACTTTGGTGTCTCTGCTTGCATGTTTGACTCTGGTGATAGGCAACGCTCCAGGAACACTTTCGTGGGGACTCCATGCTGGATGGCACCTGAAGTTATGGAACAACTTCATGGTTACGATTTCAAAGCTGATATAT
GGTCCCTTGGGATAACTGCATTAGAGCTTGCTCATGGTCATGCTCCATTTTCCAAATATCCTCCAATGAAGGTCTTGCTTATGACCTTGCAAAATGCACCTCCAGGTCTTGACTATGAAAGGGACAAGAAATTTTCCAAGTCTTTCAAGGAAATGGTAGCTATGTGCCTAGTAAAGGATCCTACAAAGCGACCAACATCA
ACAAAGCTTTTGAAACATCACTTCTTCAAGCATGCCCGTTCAAATGACTATGTGGCTCGAACAGTGCTTGATGGCTTACCTCCTCTTGGTGAACGCTGTAAGATCTTGAAGCTAAGAGAAATGGACAGAGTGGCACAAAATAAAATGGCTTATGAAGAGAAAGAAGAGAGATCACAGAGTGAATACATCCGAGGTATTAG
TGCTTGGAATTTTAATCTGGAGGATTTGAAGGCTCAGGCTGCTATGATTCAAGATGATGAAATCACCTCCTCAAAGGAACAGCCAGGGAATGTGAAACCAATGAAAGGGAGTAAGGAGTTGTCAAGAATGGCATCACAGTATGAGTCTCCTATTACTCGTAGTTCTCTCAAGGTGGAGACTTCTGAGAAGGATGGAGACT
ATGTTATGCCGGTTCAGCCAGGCCCTCTGTTATCTTCGTTGTCACTTCAATCTGGAAATGGTCTCAAAGAGCAATTTGATGTTATTGAGGATGACAGCCCAATTTGGCAGGAGTGTATCAAGTCCCAACACTCTAGAATGGATGATGCGTTGCAGGCACAGCAGAAAGATGATATTGAAAGTGTCAGGGATAGAAGGCCT
GATTCAGgtaaagatcttggtgttatagaagatgcttaccgtggttctatacacagccgcaaagtttttagtgggccacttggctcagaacacgtcatcacttcttctagagggggaactggagatggagacagGGAAAGGCATGAAAGACGACCTCAGCATAGAAATTTTAGTGGCCCATTATTGCATGGGTCAAAAGA
TATTGATAGCTCTTCCGAACCATCTAAATTATTAGAAGATAAATTGAAAGTAGCATTTGTACAGCAAAAAGGGCGCTTCAAAGTTACATCCGAGGATGTAGATCTCAATGAGACCCCCTCTCAAGCCACTTCAATGTCTCGGCCATCTTCTGCACCCTGGAACAATGCTGCAACTATATCTTCTTCTGCAATCCTTCCAC
AGTTACAAAATATTCTAGAACAGAATATTATGCAAAGGGATCAAATAATTTTTTTGATGAAACATGCAAGCCAGGGAGAAATTCCTCCAGCTCGCCGCTTAACTGAGCTCAACTCCAAATCCACCACTTCAAGTGCTGCTGAAAATTTCATGTCAGAACCACTTTCTGATCGAGAACGCGGGATACTACAACAAGTCCAT
GAGATGGAACACAGGGTTGCAAGTCTTGATGATGAGTTGCAAAGAGTGAAGATGAGAAATATTCAGCTTGAACGACAACTGAATGCTGCCTTCAACAGGGAAGAGGAGGAAAGGATCAAAAGAGAGGAAGCAGCTCGTGAACAGGGATGAATATGGTGTTTTTTTTCTGCCTTCATGGAAGAGTTCAATCCAGAAGAATC
TGGAGATGTTGAATTCAGGGGAAAATTTCCAGTTGCTCATATTTTGTAAATTCAGGCTATGGTGTGGTGGTTTATGATTGATCATCTTAATATATTCTTTCATTCTGCTCGATCTTGCAGAATATGGTGTCCATGTAATTTAGTATTTATGTTGAGATTCCAAACGACAAAAGATGGTTACGTGTCTGTAAAGGAGCCAT
TTTTTTTCAAAGGGTCCTAAAAAGTTGCACCTATTTGCTCTGGATCTGAACATGTATGTAGTCAATATTTGTCCTACAGAAAACTGTGGCAAGAGATAAATGATTCAGTCTGATTGGCTAAACTGGTAAAGATTGCTTTATGTTCAGTTTGTTTGGTAGGGGAATCTTGTAAGATTTTCCAAGCTTTATGTCCAAGCTGC
TGCTCTAAAATACATTTAGTAAGATTGTCCAAGCTTTAGGGGAATCTTGTAAGATTGTCCATGCCCATGGTTTCTTTTAGATTAATCATCAATATTGTGAGTGGTATGGTGAACTATCTAGGGGCTATCTAGCCAGTTTAATACCTATAATTGTCAGGTTATGGTGTGGTGGTTTCTGATTGATCATCTTAATGTATTCT
TTCATTCTGCTCGATCTTGCAGAATATGGTGTCCATGTAATTTAGTATTTATGTTGAGATTCCAGACGACAAAAGATGGTTACGAGTCTGTAAAGGAACCATTTTTTTTCAAATGGTCTCCTGAAATTTTGCACCTATTTGCTCTGGATCTGAACATGTATGTAGTCAATATTTGTCCTACAGAAAACTGTGGCAAGAGA
TAAATGATTCAGTCTGATTGGCTAAACTGGTAAAGATTGCTTTATGTTCAGTTTGTTTGGTAGGGGAATCT