NA ----> NA
Intron 1 GTATTCAATC ... TGGTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 5 | 10 |
| A2 | 100 | 0 | 5 | 8 |
| A3 | 58.33 | 5 | 5 | 9 |
| A4 | 60 | 1 | 0 | 3 |
| A5 | 55.56 | 2 | 1 | 4 |
| A6 | 66.67 | 1 | 1 | 3 |
| A7 | 75 | 1 | 2 | 4 |
| A8 | 77.78 | 1 | 6 | 1 |
| A9 | 71.43 | 1 | 2 | 3 |
| A10 | 63.64 | 2 | 3 | 4 |
>TRINITY_DN101212_c0_g3_i1 from sample A3 / Example spliced isoformGTTGAAGGAACCAAGATCTTCAAGTGCACCCTAGCTTGTGGAGGAAGTTTTCTAGACTAGCTTTCAAATCCTATTACTAAGGAGGGTAGGCCGACTTCATCCACTCTTCAGGAACACATATTTGTATACAGGATTGGCCACCAAATTCGCCCAGTGTGCCTTGGTGATCTCAGGAGAAGGGGGTTTCTAACCCATATTTG
TTTTTCCTTGTGTTGAAGGAACCAAGATCTTCAAGTGCACCCTAGCTTGTGGAGGAAGTTTTCTAGACTAGCTTTCAAATCCTATTACTAAGGAGGGTAGGCCGACTTCATCCACTCTTCAGGAACACATGTGTTTTTAACTTTCCATTCAACTTTCGTAAAGAAAGCATGAAAGCTCCATCTAAACCTGAATGTGCAAT
TGCTTATGAAAGTGAGGAGACATAGGCAACATTTTTGGCATCAATGCCGGGACGCAATACCGCTAATATACCACTTCTACCATGGCTAACCTGCAGGACAAATTTGTAAAGAAGCAAATAACACCAATGAAATTGGAAAAACAAATGAAACTGAAAAGATAGTGATAGTGGATTAGTATATGCTTGTTTAAGATTCCCTT
TGAGTTGGGACAGTCTATACCATAGTAGCAATATTAGGTCGTATTGGCCTTTGCTGTACAAAACTTCGGAAACATTACGGGATTCAATGAATTTCTGTACAGTACAGATACTGTATGGTCAACATATTTTTGATTGTCTTTGGTAATACACTTTATGTATATGAATCCTATCTACCCGTAAACCCAAAAAAACTAGCTCA
AGAACCTCC
>TRINITY_DN101212_c0_g3_i2 from sample A3 / Example unspliced isoform:GTTGAAGGAACCAAGATCTTCAAGTGCACCCTAGCTTGTGGAGGAAGTTTTCTAGACTAGCTTTCAAATCCTATTACTAAGGAGGGTAGGCCGACTTCATCCACTCTTCAGGAACACATATTTGTATACAGGATTGGCCACCAAATTCGCCCAGTGTGCCTTGGTGATCTCAGGAGAAGGGGGTTTCTAACCCATATTTG
TTTTTCCTTGTgtattcaatctcgaagcgccattgtctcttgcttgcatgctatctatttcattttgtaagttgagttttgttttgtggttgatttatccatgattctcaattactaacttagattttggtttgcagGTTGAAGGAACCAAGATCTTCAAGTGCACCCTAGCTTGTGGAGGAAGTTTTCTAGACTAGCTT
TCAAATCCTATTACTAAGGAGGGTAGGCCGACTTCATCCACTCTTCAGGAACACATGTGTTTTTAACTTTCCATTCAACTTTCGTAAAGAAAGCATGAAAGCTCCATCTAAACCTGAATGTGCAATTGCTTATGAAAGTGAGGAGACATAGGCAACATTTTTGGCATCAATGCCGGGACGCAATACCGCTAATATACCAC
TTCTACCATGGCTAACCTGCAGGACAAATTTGTAAAGAAGCAAATAACACCAATGAAATTGGAAAAACAAATGAAACTGAAAAGATAGTGATAGTGGATTAGTATATGCTTGTTTAAGATTCCCTTTGAGTTGGGACAGTCTATACCATAGTAGCAATATTAGGTCGTATTGGCCTTTGCTGTACAAAACTTCGGAAACA
TTACGGGATTCAATGAATTTCTGTACAGTACAGATACTGTATGGTCAACATATTTTTGATTGTCTTTGGTAATACACTTTATGTATATGAATCCTATCTACCCGTAAACCCAAAAAAACTAGCTCAAGAACCTCC