NA ----> NA
Intron 1 GTAGCTGCTA ... GTGAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 22 | 4.6 | 11 |
| A2 | 37.84 | 23 | 7.7 | 14 |
| A3 | 34.38 | 21 | 5 | 11 |
| A4 | 42.86 | 12 | 1.9 | 9 |
| A5 | 12.5 | 14 | 3.4 | 2 |
| A6 | 22.81 | 132 | 23.7 | 39 |
| A7 | 26.88 | 68 | 16.3 | 25 |
| A8 | 20.65 | 73 | 11.7 | 19 |
| A9 | 14.1 | 67 | 13.4 | 11 |
| A10 | 20 | 56 | 10 | 14 |
>TRINITY_DN104988_c0_g1_i2 from sample A2 / Example spliced isoformGCAGGGTTGAAGGTTCCAACTTCATCTTATCTCTTCTTCTCACATGCTATTGTAACAGATCGTCTGTTTTGCTGAGAGTTGGAGATTGTTTTTGGGTAGTGTACAGAGGCTTTTCATTAAGGGCATCTGAGACCTGTTACTGGATTGTATATTCCTTCAACATATATAATCTGGGCAGATATAAATTCATTCAGTAAGTG
GGTATGTTAGTTTTCCATGAGAACCCAACATTTGAAACAAGTGAGAACACAGGGACCATGCTTCCCGAATCCCCACCTCGGAGCGATGAGAACACAGGAATCATGTTTCCCAAATCCCCACCTCGGAGCAATCAGGTCACTGATGGGTCCAATAGCCCTCCTAGTGTAATTTTCTCTTGGTCAAGAATGAGAAGAGCACA
AGATGGTGGTGGTGGTGATGATGAGGATGATGATTCAGGACCAGTATCTCCTCCTCTCTGGCGTCCTGGATCATCTACCTATGTGCCCAATTCATCATACTACCACCCCATGTCCTTGCGTGCACAGGAGATCGCCAGGGGAAGACAGGAGCTCATGAAATTGTATGAAGGCATGCCAGAGTCTGCCTATGAGCTGTCCC
TCAAAGATCTAGTGGACCACAAGGCTGCCATGGAGCAGGTGAACTCCGATGCCCCCCGCGCCAGAAAGGAGACTGACAACAGCTTGAAGAAAAAGAGAGCACTAAGAGAGCACATGAGGAGGAAAGGCAATGACCCAAAGAGTTTTCTGTTGAATATGTTTGTTCCTAGCAGTTTAACGGGCCGATCTCATTCTCCGAAT
ACTTCTCGAGTTGTTAGGCAGAACAGTGATCAATCCAAGAAGGATTCTCCAAAGGTAGTTGTCAGAAAAGAGCATCCTATTTTCCGTCTACTGTCTCTATTGAGGATTAGGCCATCCAAGAAGTCTGAGGTATCACCTTCCAATAGTTTCTCCAAAGTTTCTCCGAGACCTTATTTCGGGAAGGATGGTCAGACTGACAA
GCCTTTCATGGACAGCCCTAATGGACCAAAATCAAACCGTTCGAACATCTGCGCCATGTGTTCAGTATCCACTGTTTATCTCAAGATACAATGCGAGGCATGTGACAAGATCTATTGCAGCAGCTGCGTCAAGTCGGCTATTGCAAACACCCCAGAAGGACCAAGGTGCCGAGCCACCTGTGCGTTTGGATCAAATAGTG
ATAGTGACTTGGAGCCCAAGTTGAATAGTTGCTGGCCCATTTTATCCACCAAGAAAGTAAAACCTGGGAGGAAGACAAAGTATTCCTTTAGCGAAGAGTAGAAAGAAAATAACGTGTTTGATGTATTAAGTGTTTTTGAAAGGGCTGTACATCTTCCTATTGGAATTTCTCATGGCCCCTGGTTTGCAGAAACTGGTTAA
TTTAGAACTTTTCTGAAGTCCATATATATGGAAGTGTGGGCCTCGAAATTCGGAACATGGATATGGATCCTTAAACAAAAGACCAAACTGAGTCCTAGAAGGGTACACGCTATCATTAGCTTTTCAATCCAAATAGCTTCTACATTCTAATGGGCCATGAGAAGCAGCATGCGTTGTCCTGTGCTATTGAGGGATTGAAT
TTTGAATGTCTCCTTCAATAGGTAGGAACACTCCGTTTTAGCATATACAGCTCAATCACTTGTTTTCAGTATCACAAAATTCAGTGTGTATGATTTCCACCAAAAGTAAAAATGGGTTTTTATAGCATTTGTACATATTACTAAGTTGATCAAGAGGTCTAGTCATTAATTATCCAACACAGTTTACAACTGTGTCAATT
TAAGCCAAAAAAATATAAATATATATTTGTTTGGTTATTTGCAGGACATATTTCTATGACGATTTGGATAAATGTCGACCATTAGAGATAGACAGGTTTTTGTCATGTCAGCAAAAC
>TRINITY_DN104988_c0_g1_i3 from sample A2 / Example unspliced isoform:CATTTCTGATATTATTTACTAGTATTTCAGTTTCAAATGTTCAGATATATACATAGAATAGTTGCTAAGTTACATATTTATCAGTTGGTTTTGAGCAGCATAGTAATATTCATCTGATGTTGGATTCATGCAGGCATGTGACAAGATCTATTGCAGCAGCTGCGTCAAGTCGGCTATTGCAAACACCCCAGAAGGACCAA
GGTGCCGAGCCACCTGTGCGTTTGGATCAAATAGTGATAGgtagctgctacaatctctgcattttccagtctaaggaccaacatttacaatattccaactgaggcctccacttgttttatcaccattgattgaagattcttttctgtgaatgcagTGACTTGGAGCCCAAGTTGAATAGTTGCTGGCCCATTTTATCCAC
CAAGAAAGTAAAACCTGGGAGGAAGACAAAGTATTCCTTTAGCGAAGAGTAGAAAGAAAATAACGTGTTTGATGTATTAAGTGTTTTTGAAAGGGCTGTACATCTTCCTATTGGAATTTCTCATGGCCCCTGGTTTGCAGAAACTGGTTAATTTAGAACTTTTCTGAAGTCCATATATATGGAAGTGTGGGCCTCGAAAT
TCGGAACATGGATATGGATCCTTAAACAAAAGACCAAACTGAGTCCTAGAAGGGTACACGCTATCATTAGCTTTTCAATCCAAATAGCTTCTACATTCTAATGGGCCATGAGAAGCAGCATGCGTTGTCCTGTGCTATTGAGGGATTGAATTTTGAATGTCTCCTTCAATAGGTAGGAACACTCCGTTTTAGCATATACA
GCTCAATCACTTGTTTTCAGTATCACAAAATTCAGTGTGTATGATTTCCACCAAAAGTAAAAATGGGTTTTTATAGCATTTGTACATATTACTAAGTTGATCAAGAGGTCTAGTCATTAATTATCCAACACAGTTTACAACTGTGTCAATTTAAGCCAAAAAAATATAAATATATATTTGTTTGGTTATTTGCAGGACAT
ATTTCTATGACGATTTGGATAAATGTCGACCATTAGAGATAGACAGGTTTTTGTCATGTCAGCAAAAC