NA ----> NA
Intron 1 GCATTTATTC ... TATGATCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0 | 2 | 0 | 0 |
| A2 | 33.48 | 10 | 5 | 0 |
| A3 | 38.89 | 11 | 7 | 0 |
| A4 | 24.04 | 9.5 | 3 | 1 |
| A5 | 0 | 3 | 0 | 0 |
| A6 | 37.5 | 10 | 6 | 0 |
| A7 | 20.78 | 13 | 3 | 0 |
| A8 | 26.79 | 11 | 4 | 0 |
| A9 | 35.09 | 13 | 7 | 4 |
| A10 | 28.57 | 15 | 6 | 0 |
>TRINITY_DN36713_c0_g1_i2 from sample A9 / Example spliced isoformATTACAAATATTTTTTAGGCTCATATAGAAATCAAAACATGATCTCCGTCACGATCTGGTAATCAACATTTATACCGGGAAGAAGGGAGGAATTACCCAAGATACTTAAAATGGAAGTTCTTCAGCGTCTGGAAGGGGTACAAAGAATGGTGGGATTGATGCATAACCACTCCGTTGTAGGCCCAGACGCAGCCTCAGAT
CGTTTCCTCGCCGAATTCCTTCTTTTCATGGTTCAAGCATGTTCTGATGAACATGAGATGGCAGGAAGGTGCAGGCTGTTAGCTGAGCAATTACCAAAGATGTCAGGGACCCTTCTAGAAGAAGCATTATGCTGGAAGGCTAAACAAGATGACAAAGAATTGCAATTTAGGGCTACCAAAAACGGAAACAAGGATACTAC
CAATGCATTTTTCCCATCATTAGGAGGCTATATAGTGGAGGAAATGCCTTTAGTTGGATTAGATGCAATGGAGCGAGCAAAGTCTACACTTGACGACTTTTGCAGGTCATATTTTATGTTCCATGATGTGGATGTCCATAAACCAGGATCATGGTTCAGATATCTTCCAATTCTCACATTTGTTGAAAGCTACATATATC
AGCTGGACAGGCTGAATGAAGAAGTTTTGAATCCATCTAGGGAGTGCAGTTTCAGTTCTCGGATAAATCTTAAAGATGTTCAAAATGAACAAGAGATGACTGATCCTTTTGGGCCATTGCGTAATGCATTGGAAGTCAGGGGCTTGATGACAGAACGAATCAACAAGGAATTGAGAAATGGTGTGGAGTATTGGACTCTT
GAAAGATCCCTCTGCAATGTGGCTTCAAAAGGATTAGAGATCTCAATTCAGGATGCTTTGAGAGCATTACAACTTAAGTCTTTCGACTATCGCGTTCTCAACCTTCTAATGTATGGACTGACAAAGCAGCAGGTCAATGAATGCCACTGGGACTTCCTCTCAGTTTCAGAGTTCCTGGTTGAGATTTCAGATGACTTGTA
TGATTATGAGGAAGATGTCTTAAATAACCACTTCAACATTTTGCGCATGTTTGTGAAAGTATACAAACCATTCAAGGGCCCTGCTATGATGGCAAAATGCATCATTGAAGCTGAAGAAAAGTATCAACTCCTATTAAATCAACTTGATCCTTCTCTGGTCTCTCAATACCAAAAACGTTGTGAAGAAGCAACAAAAGAAG
GGGGAAAGGTATCTACACATTCCTTCGGATCATGGAGCATACCTACTGTAATTTCAAATGAGGAATGTTATAGATCGCAATTACAAGGTTCAAATTAGAGTGTGGACAAGATCAAAGTAATGGACCTTAATGGAATCTTCGTCTTCACCATTAAGCTTACACTGTACAATTATTTATACTAAACTTATATTTAAACATTT
TAAATAGCTAGAGTATGGTTGAATTGATTTTCATAAAGTTAGACCTCTCAAATGACTTGGAAGTAAGACAGCAAAACGATAGAAAGCTTCAGAACATATATAGAAAAATCTGAAATCTGAAAAACGACTTTTAGTGGTTTGAGTTCTCTTTTTCTTTATGCTTATCGAGCTCCTAAGTTCCTTTTTGCATAAATTACAAT
TTTTTATGGGTCGCAAATGCATGTTGGGATTCAATAGATGAAGTTTGCTGATATGCACACTATTTTGAGGAATACTAAAAATTAAG
>TRINITY_DN36713_c0_g1_i3 from sample A9 / Example unspliced isoform:ATTACAAATATTTTTTAGGCTCATATAGAAATCAAAACATGATCTCCGTCACGATCTGGTAATCAACATTTATACCGGGAAGAAGGGAGGAATTACCCAAGATACTTAAAATGGAAGTTCTTCAGCGTCTGGAAGGGGTACAAAGAATGGTGGGATTGATGCATAACCACTCCGTTGTAGGCCCAGACGCAGCCTCAGAT
CGTTTCCTCGCCGAATTCCTTCTTTTCATGGTTCAAGCATGTTCTGATGAACATGAGATGGCAGGAAGGTGCAGGCTGTTAGCTGAGCAATTACCAAAGATGTCAGGGACCCTTCTAGAAGAAGCATTATGCTGGAAGGCTAAACAAGATGACAAAGAATTGCAATTTAGGGCTACCAAAAACGGAAACAAGGATACTAC
CAATGCATTTTTCCCATCATTAGGAGGCTATATAGTGGAGGAAATGCCTTTAGTTGGATTAGATGCAATGGAGCGAGCAAAGTCTACACTTGACGACTTTTGCAGGTCATATTTTATGTTCCATGATGTGGATGTCCATAAACCAGGATCATGGTTCAGATATCTTCCAATTCTCACATTTGTTGAAAGCTACATATATC
AGCTGGACAGGCTGAATGAAGAAGTTTTGAATCCATCTAGGGAGTGCAGTTTCAGTTCTCGGATAAATCTTAAAGATGTTCAAAATGAACAAGAGATGACTGATCCTTTTGGGCCATTGCGTAATGCATTGGAAGTCAGGGGCTTGATGACAGAACGgcatttattcttcaaccattactatctgatgctcctaatatga
tctagAATCAACAAGGAATTGAGAAATGGTGTGGAGTATTGGACTCTTGAAAGATCCCTCTGCAATGTGGCTTCAAAAGGATTAGAG
Intron 2 GTTCAAGCAT ... GCTAAACAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.56 | 6 | 7 | 8 |
| A2 | 63.22 | 16 | 33 | 22 |
| A3 | 67.74 | 5 | 16 | 5 |
| A4 | 66.67 | 9 | 22 | 14 |
| A5 | 71.43 | 2 | 4 | 6 |
| A6 | 66.67 | 2 | 5 | 3 |
| A7 | 63.64 | 20 | 32 | 38 |
| A8 | 57.45 | 10 | 13 | 14 |
| A9 | 74.65 | 9 | 27 | 26 |
| A10 | 86.67 | 4 | 27 | 25 |
>TRINITY_DN42139_c0_g1_i2 from sample A7 / Example spliced isoformTATAGAAATCAAAACATGATCTCCGTCACGATCTGGTAATCAACATTTATACCGGGAAGAAGGGAGGAATTACCCAAGATACTATGGAAGTTCTTCAGCGTCTGGAAGGGGTACAAAGAATGGTGGGATTGATGCATAACCACTCCGTTGTAGGCCCAGACGCAGCCTCAGATCGTTTCCTCGCCGAATTCCTTCTTTTC
ATGATGACAAAGAATTGCAATTTAGGGCTACCAAAAACGGAAACAAGGATACTACCAATGCATTTTTCCCATCATTAGGAGGCTATGTAGTGGAGGAAATGCCTTTAGTTGGATTAGATGCAATGGAGCGAGCAAAGTCTACACTTGACGACTTTTGCAGGTCATATTTTATGTTCCATGATGTGGATGTCCATAAACCA
GGATCATGGTTCAGATATCTTCCAATTCTCACATTTGTTGAAAGCTACATATATCAGCTGGACAGGCTGAATGAAGAAGTTTTGAATCCATCTAGGGAGTGCAGTTTCAGTTCTCGGATAAATCTTAAAGATGTTCAAAATGAACAAGAGATGACTGATCCTTTTGGGCCATTGCGTAATGCATTGGAAGTCAGGGGCTT
GATGACAGAACGAATCAACAAGGAATTGAGAAATGGTGTGGAGTATTGGACTCTTGAAAGATCCCTCTGCAATGTGGCTTCAAAAGGATTAGAGATCTCAATTCAGGATGCTTTGAGAGCATTACAACTTAAGTCTTTCGACTATCGCGTTCTCAACCTTCTAATGTATGGACTGACAAAGCAGCAGGTCAATGAATGCC
ACTGGGACTTCCTCTCAGTTTCAGAGTTCCTGGTTGAGATTTCAGATGACTTGTATGATTATGAGGAAGATGTCTTAAATAACCACTTCAACATTTTGCGCATGTTTGTGAAAGTATACAAACCATTCAAGGGCCCTGCTATGATGGCAAAATGCATCATTGAAGCTGAAGAAAAGTATCAACTCCTATTAAATCAACTT
GATCCTTCTCTGGTCTCTCAATACCAAAAACGTTGTGAAGAAGCAACAAAAGAAGGGGGAAAGGTATCTACACATTCCTTCGGATCATGGAGCATACCTACTGTAATTTCAAATGAGGAATGTTATAGATCGCAATTACAAGGTTCAAATTAGAGTGTGGACAAGATCAAAGTAATGGACCTTAATGGAATCTTCGTCTT
CACCATTAAGCTTACACTGTACAATTATTTATACTAAACTTATATTTAAACATTTTAAATAGCTAGAGTATGGTTGAATTGATTTTCATAAAGTTAGACCTCTCAAATGACTTGGAAGTAAGACAGCAAAACGATAGAAAGCTTCAGAACATATATAGAAAAATCTGAAATCTGAAAAACGACTTTTAGTGGTTTGAGTT
CTCTTTTTCTTTATGCTTATCGAGCTCCTAAGTTCCTTTTTGCATAAATTACAATTTTTTATGGGTCGCAAATGCATGTTGGGATTCAATAGATGAAGTTTGCTGATATGCACACTATTTTGAGGAATACTAAAAAAA
>TRINITY_DN42139_c0_g1_i3 from sample A7 / Example unspliced isoform:TATAGAAATCAAAACATGATCTCCGTCACGATCTGGTAATCAACATTTATACCGGGAAGAAGGGAGGAATTACCCAAGATACTATGGAAGTTCTTCAGCGTCTGGAAGGGGTACAAAGAATGGTGGGATTGATGCATAACCACTCCGTTGTAGGCCCAGACGCAGCCTCAGATCGTTTCCTCGCCGAATTCCTTCTTTTC
ATGgttcaagcatgttctgatgaacatgagatggcaggaaggtgcaggctgttagctgagcaattaccaaagatgtcagggacccttctagaagaagcattatgctggaaggctaaacaagATGACAAAGAATTGCAATTTAGGGCTACCAAAAACGGAAACAAGGATACTACCAATGCATTTTTCCCATCATTAGGAGG
CTATGTAGTGGAGGAAATGCCTTTAGTTGGATTAGATGCAATGGAGCGAGCAAAGTCTACACTTGACGACTTTTGCAGGTCATATTTTATGTTCCATGATGTGGATGTCCATAAACCAGGATCATGGTTCAGATATCTTCCAATTCTCACATTTGTTGAAAGCTACATATATCAGCTGGACAGGCTGAATGAAGAAGTTT
TGAATCCATCTAGGGAGTGCAGTTTCAGTTCTCGGATAAATCTTAAAGATGTTCAAAATGAACAAGAGATGACTGATCCTTTTGGGCCATTGCGTAATGCATTGGAAGTCAGGGGCTTGATGACAGAACGAATCAACAAGGAATTGAGAAATGGTGTGGAGTATTGGACTCTTGAAAGATCCCTCTGCAATGTGGCTTCA
AAAGGATTAGAGATCTCAATTCAGGATGCTTTGAGAGCATTACAACTTAAGTCTTTCGACTATCGCGTTCTCAACCTTCTAATGTATGGACTGACAAAGCAGCAGGTCAATGAATGCCACTGGGACTTCCTCTCAGTTTCAGAGTTCCTGGTTGAGATTTCAGATGACTTGTATGATTATGAGGAAGATGTCTTAAATAA
CCACTTCAACATTTTGCGCATGTTTGTGAAAGTATACAAACCATTCAAGGGCCCTGCTATGATGGCAAAATGCATCATTGAAGCTGAAGAAAAGTATCAACTCCTATTAAATCAACTTGATCCTTCTCTGGTCTCTCAATACCAAAAACGTTGTGAAGAAGCAACAAAAGAAGGGGGAAAGGTATCTACACATTCCTTCG
GATCATGGAGCATACCTACTGTAATTTCAAATGAGGAATGTTATAGATCGCAATTACAAGGTTCAAATTAGAGTGTGGACAAGATCAAAGTAATGGACCTTAATGGAATCTTCGTCTTCACCATTAAGCTTACACTGTACAATTATTTATACTAAACTTATATTTAAACATTTTAAATAGCTAGAGTATGGTTGAATTGA
TTTTCATAAAGTTAGACCTCTCAAATGACTTGGAAGTAAGACAGCAAAACGATAGAAAGCTTCAGAACATATATAGAAAAATCTGAAATCTGAAAAACGACTTTTAGTGGTTTGAGTTCTCTTTTTCTTTATGCTTATCGAGCTCCTAAGTTCCTTTTTGCATAAATTACAATTTTTTATGGGTCGCAAATGCATGTTGG
GATTCAATAGATGAAGTTTGCTGATATGCACACTATTTTGAGGAATACTAAAAAAA