sp|Q9M3B4|RID3_ARATH ----> Protein ROOT INITIATION DEFECTIVE 3
Intron 1 GTAAAAAATG ... TTTATAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.79 | 8 | 11 | 16 |
| A2 | 85.71 | 1 | 6 | 6 |
| A3 | 74.19 | 4 | 10 | 13 |
| A4 | 66.67 | 5 | 9 | 11 |
| A5 | 84.62 | 1 | 6 | 5 |
| A6 | 33.33 | 4 | 0 | 4 |
| A7 | 38.46 | 4 | 2 | 3 |
| A8 | 25 | 6 | 3 | 1 |
| A9 | 33.33 | 2 | 1 | 1 |
| A10 | 33.33 | 5 | 2 | 3 |
>TRINITY_DN101743_c2_g1_i5 from sample A4 / Example spliced isoformATACGGCTGAATCTTTCTACTATTATTTGAACAACATGCACATCTCCATAAGGGTCATCCAAAACCTTGATCAGACTAGGAAAAATATAACTTTCAAGAAATGCAAAGAGCAAGAAAGCTAATCTTGAAATCGAGGAACTGCAATGGCACAAGATCTAATCTGTAAGTTGCAATGAATCTGTAAGTGTGGAGCACCTGCT
GTAACTGAAACCTGTTCATTTGCTTCCTATGATGCGTTTTCTTGATGTACCTATATTTGAACTACCTTTTCAAGAACTTGCTTAACTATCAACCCTTGAATATGAGTTAGCTCTGATCATGTGCTAACTTGCTTCATTCTGCAAATTATTACCTGTTTCAGAAACTTCTGTCTGATACCCTTCTGTACAACATAGCCCAA
ACCAGAAATGCTGCTACTCAATGACTCTCTTAGCATCAATATTGATAAAAGGGGGTGAATGAGATTCATACTGGCACTTAGTTGGATGCACTGTACTCTACGCTGTTTAACTAACCTTGTAGTGGAAATTTGGTCGCGTGACATCTTGGAGTAGGAACCAGCTATAGGCAGAAAGGATGCATCTGTAAGAGTATTATGTT
GAAAACGAATAATCTTGCAAAGGAACAATATGAGCCATTTCTCCTCATAGCAAGCAAAAGTCCTGAAGGAACCATCTGAGTTTCTAAACAAGCAAATGATTCTGCATAGGCTTTACTCAATCTTGATTCTGCTGTTTGGATCAGGCTAAATGATGGATTAAAGAATAGCACTCCAAAATGGGTGTATGATGTTACGACAT
CCGGCAACTGTTCGTTCTAGGTGAGACTCGAGAGTACTGATAGATGCCTCTTCTTTTGACAGATTTAGTGCACTAATCTTTGTCTTTTTCAAGAATTGTCTGTACACATTGATCAACACAGAATCCATTTGGATTGTCAAGCTGATTTTAGTGGCCTTCTATTTAATGTCATATTAGAATGGTGTCATCAACAGAAATTA
ATATGGCTATAAAGTTGCAGGAATAAGGTGTCCATCTGTGTCACTGGCAGTAAAGCCCATCCAGTTTGGATGGGAGTGGGCACCCTTGCTTTGACTCCTATCATCTATGGGCATATACTGTGTATGCCATCAGTGTTTACTTGTTCCGGCGGAAACCTTGCCAGTGTTCATCTCATAAGTAGTCATTACCAGTGATACTA
TGTTTTATCAAGTCTGGAGTTCCAAAACTTTAAGCCTGTCAAATAGCGAGTTGATATTCTGTCCATCATGATTGATAAAGCTAAAATGATAGAGGTTTGAATATTTATTTCTTTCTTCTAGCAAATCTTTCAATATTTTAATTCCTTTTGCTTTCTTTAGAATCATTATCTTCTGTATAACAGCTTGTTGGGGAAACTGT
GTTGGTATAGTGAAGAACAATGATTCAATTTATATTGCCCGTTGTCTGCATGGCCTCGTTGTTTCTTAGAGCATCTTGCCATGTCAAGTTGAAGAGCTTGAACAATTAACAAAGAAGAATGCTAAACATTCAACATTTTCAGTCTTTTCTGGTTTTCCATTACTGGAATCTTATGAGGGATTCTTTACCAAAATGATGAT
TTTGGATTGATGAAATTGCTATTTTTAATACAAAAGTGCATTCAGCACCGTTGAACACTCCTACTACTGGATTATGCAACGCTAACATCTGATATCTGCAATTCCATCAATCCAAAATGAATCTTGTCAGATTTAGATTATCGTGATGCACTTCGGAAGAAAATAGTATACCAAGGGGGAGTGGGGAGGTGGTTGAAGAT
TTTTTTTATCAAGGATCTTTTTTTTCTACTGCACGGTGAATGAAACAGCCGGGCAGTCACATCATTGGCATTTAGCATGGATGGAGTTCTGTTAGTTTCTGGGTCTGAAG
>TRINITY_DN101743_c2_g1_i4 from sample A4 / Example unspliced isoform:ATACGGCTGAATCTTTCTACTATTATTTGAACAACATGCACATCTCCATAAGGGTCATCCAAAACCTTGATCAGACTAGGAAAAATATAACTTTCAAGAAATGCAAAGAGCAAGAAAGCTAATCTTGAAATCGAGGAACTGCAATGGCACAAGATCTAATCTGTAAGTTGCAATGAATCTGTAAGTGTGGAGCACCTGCT
GTAACTGAAACCTGTTCATTTGCTTCCTATGATGCGTTTTCTTGATGTACCTATATTTGAACTACCTTTTCAAGAACTTGCTTAACTATCAACCCTTGAATATGAGTTAGCTCTGATCATGTGCTAACTTGCTTCATTCTGCAAATTATTACCTGTTTCAGAAACTTCTGTCTGATACCCTTCTGTACAACATAGCCCAA
ACCAGAAATGCTGCTACTCAATGACTCTCTTAGCATCAATATTGATAAAAGGGGGTGAATGAGATTCATACTGGCACTTAGTTGGATGCACTGTACTCTACGCTGTTTAACTAACCTTGTAGTGGAAATTTGGTCGCGTGACATCTTGGAGTAGGAACCAGCTATAGGCAGAAAGGATGCATCTGTAAGAGTATTATGTT
GAAAACGAATAATCTTGCAAAGGAACAATATGAGCCATTTCTCCTCATAGCAAGCAAAAGTCCTGAAGGAACCATCTGAGTTTCTAAACAAGCAAATGATTCTGCATAGGCTTTACTCAATCTTGATTCTGCTGTTTGGATCAGGCTAAATGATGGATTAAAGAATAGCACTCCAAAATGGGTGTATGATGTTACGACAT
CCGGCAACTGTTCGTTCTAGGTGAGACTCGAGAGTACTGATAGATGCCTCTTCTTTTGACAGATTTAGTGCACTAATCTTTGTCTTTTTCAAGAATTGTCTGTACACATTGATCAACACAGAATCCATTTGGATTGTCAAGCTGATTTTAGTGGCCTTCTATTTAATGTCATATTAGAATGGTGTCATCAACAGAAATTA
ATATGGCTATAAAGTTGCAGGAATAAGGTGTCCATCTGTGTCACTGGCAGTAAAGCCCATCCAGTTTGGATGGGAGTGGGCACCCTTGCTTTGACTCCTATCATCTATGGGCATATACTGTGTATGCCATCAGTGTTTACTTGTTCCGGCGGAAACCTTGCCAGTGTTCATCTCATAAGTAGTCATTACCAGTGATACTA
TGTTTTATCAAGTCTGGAGTTCCAAAACTTTAAGCCTGTCAAATAGCGAGTTGATATTCTGTCCATCATGATTGATAAAGCTAAAATGATAGAGGTTTGAATATTTATTTCTTTCTTCTAGCAAATCTTTCAATATTTTAATTCCTTTTGCTTTCTTTAGAATCATTATCTTCTGTATAACAGCTTGTTGGGGAAACTGT
GTTGGTATAGTGAAGAACAATGATTCAATTTATATTGCCCGTTGTCTGCATGGCCTCGTTGTTTCTTAGAGCATCTTGCCATGTCAAGTTGAAGAGCTTGAACAATTAACAAAGAAGAATGCTAAACATTCAACATTTTCAGTCTTTTCTGGTTTTCCATTACTGGAATCTTATGAGGGATTCTTTACCAAAATGATGAT
TTTGGATTGATGAAATTGCTATTTTTAATACAAAAGTGCATTCAGCACCGTTGAACACTCCTACTACTGGATTATGCAACGCTAACATCTGATATCTGCAATTCCATCAATCCAAAATGAATCTTGTCAGATTTAGgtaaaaaatgtcagtttcctttcctgttattttgagtgactggaaaaggactaattcttagcac
gtttaaactttagactatggattttttatttcccaaatgctataaggagataatagttgctctttatagcagATTATCGTGATGCACTTCGGAAGAAAATAGTATACCAAGGGGGAGTGGGGAGGTGGTTGAAGATTTTTTTTATCAAGGATCTTTTTTTTCTACTGCACGGTGAATGAAACAGCCGGGCAGTCACATCA
TTGGCATTTAGCATGGATGGAGTTCTGTTAGTTTCTGGGTCTGAAG